Psyllid ID: psy1054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
Protein Sequence
SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISK
Secondary Structure (PSIPRED)
cccccEEEEEEccccccccEEEEEccEEEEEccccEEEEEEcccccccccEEEEEEEEEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccHHHHHHHHHcHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccccEEEEcccEEEEEEEEEccEEcccccEcccccEEEEEEEEEEEEcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHcccEEEEEEccHHHHHHHHHHHHHcHHHHHHHccccccc
Coil and Loop (DISEMBL)
slnpccllvvsggccghtkkltVVGGWAWAWWMVTDVQRisledvetlqgvpvtvTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREvaapdvgrmGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASfdaeistaflnpccllvvsggccghtkkltVVGGWAWAWWMVTDVQRisledvetlqgvpvtvTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLlggndhvtnDITRLVAqlppavqaltgvdISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLlggndhvtnDITRLVAqlppavqaltgvdisk
Flexible Loop (DISEMBL)
SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEdvetlqgvpvtVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVrevaapdvgrmGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEdvetlqgvpvtVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREkeltatvklpaeaECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAqlppavqaltgvdisk
Low Complexity Region (SEG)
SLNPccllvvsggccgHTKKLTvvggwawawwMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPccllvvsggccgHTKKLTvvggwawawwMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGdaavmalvldalPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISK
Disordered region (IsUnstruct)
***PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQS****FLG***EEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQS****FLG***EEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGL***************RMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALT******
Disordered Region (DISOPRED)
SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDS*I**********************************************GWAWAWWMV********************VTGTAQVKIMKAEEL**SASE*FLGK***EI******************************************************V*ISK************KLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVD***
Disordered Region (DISEMBL)
SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISK
Disordered Region (DISPRO)
**NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDIS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	467	2.2.26 [Sep-21-2011]
O61492	438	Flotillin-2 OS=Drosophila	yes	N/A	0.383	0.408	0.592	3e-71
Q98TZ8	428	Flotillin-2a OS=Danio rer	yes	N/A	0.655	0.714	0.369	7e-60
A6QLR4	428	Flotillin-2 OS=Bos taurus	yes	N/A	0.385	0.420	0.513	1e-57
Q14254	428	Flotillin-2 OS=Homo sapie	yes	N/A	0.385	0.420	0.508	2e-57
Q9Z2S9	428	Flotillin-2 OS=Rattus nor	yes	N/A	0.385	0.420	0.508	2e-57
Q60634	428	Flotillin-2 OS=Mus muscul	yes	N/A	0.385	0.420	0.508	2e-57
O42305	428	Flotillin-2 OS=Carassius	N/A	N/A	0.379	0.413	0.5	5e-57
O61491	426	Flotillin-1 OS=Drosophila	no	N/A	0.376	0.413	0.404	9e-32
Q767L6	427	Flotillin-1 OS=Sus scrofa	no	N/A	0.376	0.412	0.337	4e-25
O75955	427	Flotillin-1 OS=Homo sapie	no	N/A	0.376	0.412	0.337	4e-25

>sp|O61492|FLOT2_DROME Flotillin-2 OS=Drosophila melanogaster GN=Flo-2 PE=2 SV=3

 Score =  269 bits (688), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKQTDYHNDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

May play a role in axon growth and regeneration. May be involved in epidermal cell adhesion and epidermal structure and function.
Drosophila melanogaster (taxid: 7227)

>sp|Q98TZ8|FLOT2_DANRE Flotillin-2a OS=Danio rerio GN=flot2a PE=2 SV=2

 Score =  231 bits (590), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 160/433 (36%), Positives = 213/433 (49%), Gaps = 127/433 (29%)

Query: 1   SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGV 51
           ++ P   LVVSGGCCG   K   VGGWAWAWW++TD+Q+I+LE         DVET +GV
Sbjct: 6   TVGPNEALVVSGGCCGSDGKTYTVGGWAWAWWLITDIQKITLEIMTLQPKCEDVETAEGV 65

Query: 52  PVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK 111
            +TVTG AQVK+M   EL+  A EQFLGK+  EI+  IL TLEGHLR+ILGTLTVE+I +
Sbjct: 66  AITVTGVAQVKVMTDNELLGYACEQFLGKTVTEIKSVILQTLEGHLRSILGTLTVEQIYQ 125

Query: 112 DRDQFASLVREVAAPDVGRMGIEILSFTIGE----------------------------- 142
           DRDQFA LVREVAAPDVGRMGIEILSFTI +                             
Sbjct: 126 DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKSQTAAVQRDADIGVAE 185

Query: 143 --------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSG 194
                   EAEC+K  MDIK+  D+         K+  +  + E+  A  N         
Sbjct: 186 AERDAGIREAECKKEMMDIKFQADT---------KMADSKRELEMQKAAFNQEV------ 230

Query: 195 GCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVE-------------------TLQGVPV 235
               +TKK       A+      + Q+I LE++E                   T + +  
Sbjct: 231 ----NTKKAE--AQLAYELQAAKEQQKIRLEEIEIEVVQRKKQISIEEKEILRTDKELIA 284

Query: 236 TVTGTAQVKIMKAEELIQS------------------------ASEQFLGKSKEEIQKT- 270
           TV   A+ +  K E+L ++                         S + +GK++ E  +  
Sbjct: 285 TVRRPAEAEAFKMEQLAEAKKIKKVLTAQAEAEKIKRIGEAEAGSIEAVGKAEAEKMRLK 344

Query: 271 ---------------ILHTLEGHLRAILAPLAKTEEIVLLGGND-HVTNDITRLVAQLPP 314
                          +L  L      + APL +T EIV+L G+   VT ++ RL+A+LP 
Sbjct: 345 AEAYQQYGEAAKTALVLEALPKIAGKVAAPLGRTNEIVILSGDGGRVTGEVNRLLAELPV 404

Query: 315 AVQALTGVDISKI 327
           +V ALTGVD+SKI
Sbjct: 405 SVNALTGVDLSKI 417

May play a role in axon growth and regeneration. May be involved in epidermal cell adhesion and epidermal structure and function.

Danio rerio (taxid: 7955)

>sp|A6QLR4|FLOT2_BOVIN Flotillin-2 OS=Bos taurus GN=FLOT2 PE=2 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 144/226 (63%), Gaps = 46/226 (20%)

Query: 1   SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGV 51
           ++ P   LVVSGGCCG   K  V GGWAWAWW ++D QRISLE         DVET +GV
Sbjct: 6   TVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEGV 65

Query: 52  PVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK 111
            +TVTG AQVKIM  +EL+  A EQFLGKS ++I+  +L TLEGHLR+ILGTLTVE+I +
Sbjct: 66  ALTVTGVAQVKIMTEKELLAVACEQFLGKSVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ 125

Query: 112 DRDQFASLVREVAAPDVGRMGIEILSFTIGE----------------------------- 142
           DRDQFA LVREVAAPDVGRMGIEILSFTI +                             
Sbjct: 126 DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAE 185

Query: 143 --------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIS 180
                   EAEC+K  +D+K+  D+KI ++ R F+LQK++F  E++
Sbjct: 186 AERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVN 231

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. May be involved in epidermal cell adhesion and epidermal structure and function.

Bos taurus (taxid: 9913)

>sp|Q14254|FLOT2_HUMAN Flotillin-2 OS=Homo sapiens GN=FLOT2 PE=1 SV=2

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 144/226 (63%), Gaps = 46/226 (20%)

Query: 1   SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGV 51
           ++ P   LVVSGGCCG   K  V GGWAWAWW ++D QRISLE         DVET +GV
Sbjct: 6   TVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEGV 65

Query: 52  PVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK 111
            +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+  +L TLEGHLR+ILGTLTVE+I +
Sbjct: 66  ALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ 125

Query: 112 DRDQFASLVREVAAPDVGRMGIEILSFTIGE----------------------------- 142
           DRDQFA LVREVAAPDVGRMGIEILSFTI +                             
Sbjct: 126 DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAE 185

Query: 143 --------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIS 180
                   EAEC+K  +D+K+  D+KI ++ R F+LQK++F  E++
Sbjct: 186 AERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVN 231

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. May be involved in epidermal cell adhesion and epidermal structure and function.

Homo sapiens (taxid: 9606)

>sp|Q9Z2S9|FLOT2_RAT Flotillin-2 OS=Rattus norvegicus GN=Flot2 PE=1 SV=1

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 144/226 (63%), Gaps = 46/226 (20%)

Query: 1   SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGV 51
           ++ P   LVVSGGCCG   K  V GGWAWAWW ++D QRISLE         DVET +GV
Sbjct: 6   TVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEGV 65

Query: 52  PVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK 111
            +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+  +L TLEGHLR+ILGTLTVE+I +
Sbjct: 66  ALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ 125

Query: 112 DRDQFASLVREVAAPDVGRMGIEILSFTIGE----------------------------- 142
           DRDQFA LVREVAAPDVGRMGIEILSFTI +                             
Sbjct: 126 DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAE 185

Query: 143 --------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIS 180
                   EAEC+K  +D+K+  D+KI ++ R F+LQK++F  E++
Sbjct: 186 AERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVN 231

May play a role in axon growth and regeneration. May be involved in epidermal cell adhesion and epidermal structure and function.

Rattus norvegicus (taxid: 10116)

>sp|Q60634|FLOT2_MOUSE Flotillin-2 OS=Mus musculus GN=Flot2 PE=1 SV=2

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 144/226 (63%), Gaps = 46/226 (20%)

Query: 1   SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGV 51
           ++ P   LVVSGGCCG   K  V GGWAWAWW ++D QRISLE         DVET +GV
Sbjct: 6   TVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEGV 65

Query: 52  PVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK 111
            +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+  +L TLEGHLR+ILGTLTVE+I +
Sbjct: 66  ALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ 125

Query: 112 DRDQFASLVREVAAPDVGRMGIEILSFTIGE----------------------------- 142
           DRDQFA LVREVAAPDVGRMGIEILSFTI +                             
Sbjct: 126 DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAE 185

Query: 143 --------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIS 180
                   EAEC+K  +D+K+  D+KI ++ R F+LQK++F  E++
Sbjct: 186 AERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVN 231

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. May be involved in epidermal cell adhesion and epidermal structure and function.

Mus musculus (taxid: 10090)

>sp|O42305|FLOT2_CARAU Flotillin-2 OS=Carassius auratus GN=flot2 PE=1 SV=1

 Score =  222 bits (565), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/230 (50%), Positives = 145/230 (63%), Gaps = 53/230 (23%)

Query: 5   CCL-------LVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETL 48
           CCL       LVVSG CCG   K  VVGGWAWAWW+++D QRI+LE         DVET 
Sbjct: 3   CCLTVGPNEALVVSGACCGSDAKTYVVGGWAWAWWLISDTQRITLEIMTLQPKCEDVETA 62

Query: 49  QGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEE 108
           +GV +TVTG AQVK+M  ++L+  A EQFLGKS  EI+  +L TLEGHLR+ILGTLTVE+
Sbjct: 63  EGVAITVTGVAQVKVMTDQDLLAVACEQFLGKSVMEIKAVVLQTLEGHLRSILGTLTVEQ 122

Query: 109 IVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE-------------------------- 142
           I +DRD+FA LVREVAAPDVGRMGIEILSFTI +                          
Sbjct: 123 IYQDRDEFARLVREVAAPDVGRMGIEILSFTIKDVYDKLDYLSSLGKTQTAAVQRDADIG 182

Query: 143 -----------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIST 181
                      EAEC+K  MD+K+  D+++ ++ R  +LQKA+F+ E++T
Sbjct: 183 VAEAERDAGIREAECKKEMMDVKFLADTRMADSKRELELQKAAFNQEVNT 232

May play a role in axon growth and regeneration. May be involved in epidermal cell adhesion and epidermal structure and function.

Carassius auratus (taxid: 7957)

>sp|O61491|FLOT1_DROME Flotillin-1 OS=Drosophila melanogaster GN=Flo PE=2 SV=1

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 122/225 (54%), Gaps = 49/225 (21%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLED---------VETLQGVPVT 54
           P   LVVSG CC + K L V GG A+ W +   VQRISL           V T QGVP++
Sbjct: 10  PNEALVVSG-CC-YMKPLLVPGGRAFVWPVGQQVQRISLNTMTLQVESPCVYTSQGVPIS 67

Query: 55  VTGTAQVKIM-KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDR 113
           VTG AQVK+  + E+++ +A EQFLGKS+ EI    L TLEGH RAI+G++TVEEI KDR
Sbjct: 68  VTGIAQVKVQGQNEDMLLTACEQFLGKSEAEINHIALVTLEGHQRAIMGSMTVEEIYKDR 127

Query: 114 DQFASLVREVAAPDVGRMGIEILSFT---------------------------IGE---- 142
            +F+  V EVA+ D+  MGI ++S+T                           IGE    
Sbjct: 128 KKFSKQVFEVASSDLANMGITVVSYTIKDLRDEEGYLRSLGMARTAEVKRDARIGEAEAR 187

Query: 143 ------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIST 181
                 EA  E+  M  ++  D+ I    R F+L+KA++D E+ T
Sbjct: 188 AEAHIKEAIAEEQRMAARFLNDTDIAKAQRDFELKKAAYDVEVQT 232

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Drosophila melanogaster (taxid: 7227)

>sp|Q767L6|FLOT1_PIG Flotillin-1 OS=Sus scrofa GN=FLOT1 PE=3 SV=1

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 49/225 (21%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   +VVSG C   +  + V GG  +    +  +QRISL         E V T  GVP++
Sbjct: 7   PNEAMVVSGFC--RSPPVMVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPIS 64

Query: 55  VTGTAQVKIM-KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDR 113
           VTG AQVKI  + +E++ +A + FLGK++ EI    L TLEGH RAI+  +TVEEI KDR
Sbjct: 65  VTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDR 124

Query: 114 DQFASLVREVAAPDVGRMGIEILSFT---------------------------IGE---- 142
            +F+  V +VA+ D+  MGI ++S+T                           IGE    
Sbjct: 125 QKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAK 184

Query: 143 ------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIST 181
                 EA+ ++  +  +Y ++ ++    R ++L+KA++D E++T
Sbjct: 185 RDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNT 229

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Sus scrofa (taxid: 9823)

>sp|O75955|FLOT1_HUMAN Flotillin-1 OS=Homo sapiens GN=FLOT1 PE=1 SV=3

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 49/225 (21%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   +VVSG C   +  + V GG  +    +  +QRISL         E V T  GVP++
Sbjct: 7   PNEAMVVSGFC--RSPPVMVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPIS 64

Query: 55  VTGTAQVKIM-KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDR 113
           VTG AQVKI  + +E++ +A + FLGK++ EI    L TLEGH RAI+  +TVEEI KDR
Sbjct: 65  VTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDR 124

Query: 114 DQFASLVREVAAPDVGRMGIEILSFT---------------------------IGE---- 142
            +F+  V +VA+ D+  MGI ++S+T                           IGE    
Sbjct: 125 QKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAK 184

Query: 143 ------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEIST 181
                 EA+ ++  +  +Y ++ ++    R ++L+KA++D E++T
Sbjct: 185 RDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNT 229

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
442616363	440	Flotillin-2, isoform L [Drosophila melan	0.383	0.406	0.626	4e-72
24642031	425	Flotillin-2, isoform B [Drosophila melan	0.383	0.421	0.626	4e-72
194767904	438	GF19486 [Drosophila ananassae] gi|190622	0.383	0.408	0.592	9e-70
195432685	438	GK20117 [Drosophila willistoni] gi|19416	0.383	0.408	0.592	9e-70
442616358	435	Flotillin-2, isoform I [Drosophila melan	0.383	0.411	0.6	1e-69
198471140	438	GA23027 [Drosophila pseudoobscura pseudo	0.383	0.408	0.592	1e-69
194894889	438	GG17854 [Drosophila erecta] gi|190649787	0.383	0.408	0.592	2e-69
328716074	424	PREDICTED: flotillin-2-like [Acyrthosiph	0.389	0.429	0.587	2e-69
24642027	438	Flotillin-2, isoform A [Drosophila melan	0.383	0.408	0.592	2e-69
195478656	438	GE17157 [Drosophila yakuba] gi|194188122	0.383	0.408	0.592	2e-69

>gi|442616363|ref|NP_001259554.1| Flotillin-2, isoform L [Drosophila melanogaster] gi|440216776|gb|AGB95396.1| Flotillin-2, isoform L [Drosophila melanogaster]

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 141/225 (62%), Positives = 164/225 (72%), Gaps = 46/225 (20%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRD 114
           VTG AQ KIMKA+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAILGTLTVEE+ KDRD
Sbjct: 69  VTGVAQCKIMKADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVYKDRD 128

Query: 115 QFASLVREVAAPDVGRMGIEILSFTIGE-------------------------------- 142
           QFA+LVREVAAPDVGRMGIEILSFTI +                                
Sbjct: 129 QFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANR 188

Query: 143 -----EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 DAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 233

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642031|ref|NP_511157.2| Flotillin-2, isoform B [Drosophila melanogaster] gi|24642033|ref|NP_727799.1| Flotillin-2, isoform F [Drosophila melanogaster] gi|22832245|gb|AAN09343.1| Flotillin-2, isoform B [Drosophila melanogaster] gi|22832246|gb|AAN09344.1| Flotillin-2, isoform F [Drosophila melanogaster] gi|33589328|gb|AAQ22431.1| RE74011p [Drosophila melanogaster] gi|220951168|gb|ACL88127.1| Flo-2-PB [synthetic construct]

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 141/225 (62%), Positives = 164/225 (72%), Gaps = 46/225 (20%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRD 114
           VTG AQ KIMKA+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAILGTLTVEE+ KDRD
Sbjct: 69  VTGVAQCKIMKADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVYKDRD 128

Query: 115 QFASLVREVAAPDVGRMGIEILSFTIGE-------------------------------- 142
           QFA+LVREVAAPDVGRMGIEILSFTI +                                
Sbjct: 129 QFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANR 188

Query: 143 -----EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 DAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 233

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194767904|ref|XP_001966054.1| GF19486 [Drosophila ananassae] gi|190622939|gb|EDV38463.1| GF19486 [Drosophila ananassae]

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETAQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKNNDYQNDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432685|ref|XP_002064347.1| GK20117 [Drosophila willistoni] gi|194160432|gb|EDW75333.1| GK20117 [Drosophila willistoni]

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETAQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKNKDYNNDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616358|ref|NP_001259552.1| Flotillin-2, isoform I [Drosophila melanogaster] gi|440216774|gb|AGB95394.1| Flotillin-2, isoform I [Drosophila melanogaster]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 141/235 (60%), Positives = 164/235 (69%), Gaps = 56/235 (23%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMK----------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTL 104
           VTG AQ KIMK          A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAILGTL
Sbjct: 69  VTGVAQCKIMKMMNVYYFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTL 128

Query: 105 TVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE---------------------- 142
           TVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                      
Sbjct: 129 TVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVVKRD 188

Query: 143 ---------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                          EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 ADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 243

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471140|ref|XP_002133671.1| GA23027 [Drosophila pseudoobscura pseudoobscura] gi|198145784|gb|EDY72298.1| GA23027 [Drosophila pseudoobscura pseudoobscura]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETAQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKNNDYNNDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894889|ref|XP_001978138.1| GG17854 [Drosophila erecta] gi|190649787|gb|EDV47065.1| GG17854 [Drosophila erecta]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKQNDYHNDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716074|ref|XP_001952277.2| PREDICTED: flotillin-2-like [Acyrthosiphon pisum]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/228 (58%), Positives = 162/228 (71%), Gaps = 46/228 (20%)

Query: 1   SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGV 51
           ++ P   L+VSGG CG TK+ TVVGGWAWAWW++TDVQ +SLE          VET+ GV
Sbjct: 6   TVGPNKALIVSGGFCGSTKRTTVVGGWAWAWWLITDVQYLSLEVMTLNPMCDTVETVHGV 65

Query: 52  PVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK 111
           P+TVTG AQ KIMKA+EL+Q+ASEQFLG++  EI++T+L TLEGHLRAILGTLTVEE+ K
Sbjct: 66  PLTVTGVAQCKIMKADELLQTASEQFLGRTTNEIKQTVLQTLEGHLRAILGTLTVEEVYK 125

Query: 112 DRDQFASLVREVAAPDVGRMGIEILSFTIGE----------------------------- 142
           DRDQFASLVREVAAPDVGRMGIEILSFTI +                             
Sbjct: 126 DRDQFASLVREVAAPDVGRMGIEILSFTIKDVFDDVQYLTSLGKSQTAAVKRDADIGVAL 185

Query: 143 --------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                   EAECEK AMD+KY TD+KIE+N+R+FKLQKA++D E++TA
Sbjct: 186 ANRDAGIREAECEKLAMDVKYGTDTKIEDNSRMFKLQKANYDMEVNTA 233

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642027|ref|NP_727797.1| Flotillin-2, isoform A [Drosophila melanogaster] gi|24642029|ref|NP_727798.1| Flotillin-2, isoform E [Drosophila melanogaster] gi|442616365|ref|NP_001259555.1| Flotillin-2, isoform K [Drosophila melanogaster] gi|195354583|ref|XP_002043776.1| GM12049 [Drosophila sechellia] gi|195566770|ref|XP_002106949.1| anon-381MEL [Drosophila simulans] gi|27923970|sp|O61492.3|FLOT2_DROME RecName: Full=Flotillin-2 gi|22832243|gb|AAF48407.2| Flotillin-2, isoform A [Drosophila melanogaster] gi|22832244|gb|AAF48393.3| Flotillin-2, isoform E [Drosophila melanogaster] gi|194129002|gb|EDW51045.1| GM12049 [Drosophila sechellia] gi|194204345|gb|EDX17921.1| anon-381MEL [Drosophila simulans] gi|325995196|gb|ADZ49071.1| LD15975p [Drosophila melanogaster] gi|440216777|gb|AGB95397.1| Flotillin-2, isoform K [Drosophila melanogaster]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKQTDYHNDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478656|ref|XP_002100598.1| GE17157 [Drosophila yakuba] gi|194188122|gb|EDX01706.1| GE17157 [Drosophila yakuba]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 164/238 (68%), Gaps = 59/238 (24%)

Query: 4   PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVT 54
           P   L+VSGGCCG TKK T+VGGWAWAWW+VTDVQR+SL         E+VET QGVP+T
Sbjct: 9   PNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVMTLNPMCENVETSQGVPLT 68

Query: 55  VTGTAQVKIMK-------------AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL 101
           VTG AQ KIMK             A+EL+ +ASEQFLGKS +EI++TIL TLEGHLRAIL
Sbjct: 69  VTGVAQCKIMKSSSYKQTDYHSDEADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAIL 128

Query: 102 GTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------------------- 142
           GTLTVEE+ KDRDQFA+LVREVAAPDVGRMGIEILSFTI +                   
Sbjct: 129 GTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAVV 188

Query: 143 ------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTA 182
                             EAECEKSAMD+KY+TD+KIE+N R++KLQKA+FD EI+TA
Sbjct: 189 KRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKANFDQEINTA 246

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
FB|FBgn0264078	438	Flo-2 "Flotillin-2" [Drosophil	0.312	0.333	0.616	1.1e-80
ZFIN|ZDB-GENE-020430-3	428	flot2a "flotillin 2a" [Danio r	0.231	0.252	0.666	2.3e-70
UNIPROTKB|A6QLR4	428	FLOT2 "Flotillin-2" [Bos tauru	0.229	0.25	0.681	7.7e-70
UNIPROTKB|F1PPL5	428	FLOT2 "Uncharacterized protein	0.229	0.25	0.672	9.8e-70
UNIPROTKB|Q14254	428	FLOT2 "Flotillin-2" [Homo sapi	0.229	0.25	0.672	9.8e-70
ZFIN|ZDB-GENE-040426-1368	428	flot2b "flotillin 2b" [Danio r	0.312	0.341	0.510	1.2e-69
MGI|MGI:103309	428	Flot2 "flotillin 2" [Mus muscu	0.229	0.25	0.672	2e-69
RGD|70993	428	Flot2 "flotillin 2" [Rattus no	0.229	0.25	0.672	2e-69
UNIPROTKB|Q9Z2S9	428	Flot2 "Flotillin-2" [Rattus no	0.229	0.25	0.672	2e-69
UNIPROTKB|G3X6T9	385	FLOT2 "Flotillin-2" [Bos tauru	0.209	0.254	0.744	4.2e-69

FB|FBgn0264078 Flo-2 "Flotillin-2" [Drosophila melanogaster (taxid:7227)]

 Score = 463 (168.0 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 90/146 (61%), Positives = 119/146 (81%)

Query:   322 VDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATA 381
             ++  ++QR+++ELT TVKLPAEAE +RL+TLA+AK+ Q+IE A+AEA +I+  G A+A A
Sbjct:   283 IESQEVQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGSAEAHA 342

Query:   382 SEALGRAEADRMRLKAQVFKQYGXXXXXXXXXXXXPKIAAEVAAPLAKTEEIVLLGGNDH 441
              E +G+AEA+RMR+KA V+KQYG            PKIAAEVAAPLAKT+EIVL+GGND+
Sbjct:   343 IELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAPLAKTDEIVLIGGNDN 402

Query:   442 VTNDITRLVAQLPPAVQALTGVDISK 467
             +TND+TRLVAQLPP++ ALTGVD+SK
Sbjct:   403 ITNDVTRLVAQLPPSINALTGVDLSK 428

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0016600 "flotillin complex" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

ZFIN|ZDB-GENE-020430-3 flot2a "flotillin 2a" [Danio rerio (taxid:7955)]

 Score = 366 (133.9 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 78/117 (66%), Positives = 92/117 (78%)

Query:    33 MVTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKE 83
             ++TD+Q+I+LE         DVET +GV +TVTG AQVK+M   EL+  A EQFLGK+  
Sbjct:    38 LITDIQKITLEIMTLQPKCEDVETAEGVAITVTGVAQVKVMTDNELLGYACEQFLGKTVT 97

Query:    84 EIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             EI+  IL TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    98 EIKSVILQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0003674 "molecular_function" evidence=ND

GO:0030139 "endocytic vesicle" evidence=ISS

GO:0005768 "endosome" evidence=IEA;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A6QLR4 FLOT2 "Flotillin-2" [Bos taurus (taxid:9913)]

 Score = 367 (134.2 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
 Identities = 79/116 (68%), Positives = 92/116 (79%)

Query:    34 VTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEE 84
             ++D QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGKS ++
Sbjct:    39 ISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKSVQD 98

Query:    85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             I+  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    99 IKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0030139 "endocytic vesicle" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0016600 "flotillin complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|F1PPL5 FLOT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 78/116 (67%), Positives = 92/116 (79%)

Query:    34 VTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEE 84
             ++D QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++
Sbjct:    39 ISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 98

Query:    85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             I+  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    99 IKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

UNIPROTKB|Q14254 FLOT2 "Flotillin-2" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 78/116 (67%), Positives = 92/116 (79%)

Query:    34 VTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEE 84
             ++D QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++
Sbjct:    39 ISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 98

Query:    85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             I+  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    99 IKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0007155 "cell adhesion" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=NAS

GO:0008544 "epidermis development" evidence=TAS

ZFIN|ZDB-GENE-040426-1368 flot2b "flotillin 2b" [Danio rerio (taxid:7955)]

 Score = 364 (133.2 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 75/147 (51%), Positives = 105/147 (71%)

Query:   322 VDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATA 381
             ++  +I+R EKEL ATVK PAEAE Y++E LAE  K+Q +  A+AEA KI+  G A+A +
Sbjct:   270 IEEREIERTEKELIATVKRPAEAEAYKMEQLAEGYKMQKVLTAQAEAEKIRKIGEAEAIS 329

Query:   382 SEALGRAEADRMRLKAQVFKQYGXXXXXXXXXXXXPKIAAEVAAPLAKTEEIVLLGGN-D 440
               ++G+AEA+RMRLKA+ ++QYG            PKIA +V+APLA+T EIV+L G+  
Sbjct:   330 ISSVGKAEAERMRLKAEAYQQYGEAAKTALVLDALPKIAGKVSAPLARTNEIVILSGDGS 389

Query:   441 HVTNDITRLVAQLPPAVQALTGVDISK 467
              VT ++ RL+A+LP +V ALTGVD+SK
Sbjct:   390 RVTGEVNRLLAELPVSVNALTGVDLSK 416

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:103309 Flot2 "flotillin 2" [Mus musculus (taxid:10090)]

 Score = 364 (133.2 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 78/116 (67%), Positives = 92/116 (79%)

Query:    34 VTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEE 84
             ++D QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++
Sbjct:    39 ISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 98

Query:    85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             I+  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    99 IKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0002080 "acrosomal membrane" evidence=IDA

GO:0005768 "endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005901 "caveola" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016600 "flotillin complex" evidence=ISO;IDA

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0035255 "ionotropic glutamate receptor binding" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

RGD|70993 Flot2 "flotillin 2" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 78/116 (67%), Positives = 92/116 (79%)

Query:    34 VTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEE 84
             ++D QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++
Sbjct:    39 ISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 98

Query:    85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             I+  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    99 IKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0002080 "acrosomal membrane" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IEA;ISO;ISS

GO:0005901 "caveola" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO

GO:0016600 "flotillin complex" evidence=IEA;ISO;IDA

GO:0030139 "endocytic vesicle" evidence=IEA;ISO;ISS

GO:0035255 "ionotropic glutamate receptor binding" evidence=IPI

GO:0045121 "membrane raft" evidence=ISO

UNIPROTKB|Q9Z2S9 Flot2 "Flotillin-2" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 78/116 (67%), Positives = 92/116 (79%)

Query:    34 VTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEE 84
             ++D QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++
Sbjct:    39 ISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 98

Query:    85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             I+  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    99 IKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 154

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

UNIPROTKB|G3X6T9 FLOT2 "Flotillin-2" [Bos taurus (taxid:9913)]

 Score = 360 (131.8 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 73/98 (74%), Positives = 84/98 (85%)

Query:    43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILG 102
             EDVET +GV +TVTG AQVKIM  +EL+  A EQFLGKS ++I+  +L TLEGHLR+ILG
Sbjct:    14 EDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKSVQDIKNVVLQTLEGHLRSILG 73

Query:   103 TLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
             TLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct:    74 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 111

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q60634	FLOT2_MOUSE	No assigned EC number	0.5088	0.3854	0.4205	yes	N/A
Q98TZ8	FLOT2_DANRE	No assigned EC number	0.3695	0.6552	0.7149	yes	N/A
Q9Z2S9	FLOT2_RAT	No assigned EC number	0.5088	0.3854	0.4205	yes	N/A
A6QLR4	FLOT2_BOVIN	No assigned EC number	0.5132	0.3854	0.4205	yes	N/A
Q14254	FLOT2_HUMAN	No assigned EC number	0.5088	0.3854	0.4205	yes	N/A
O61492	FLOT2_DROME	No assigned EC number	0.5924	0.3832	0.4086	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	467
cd03399	128	cd03399, Band_7_flotillin, Band_7_flotillin: a sub	5e-41
cd03399	128	cd03399, Band_7_flotillin, Band_7_flotillin: a sub	2e-19
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	1e-16
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	6e-14
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	1e-10
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	3e-07
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	4e-05

>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  142 bits (361), Expect = 5e-41
 Identities = 58/106 (54%), Positives = 78/106 (73%)

Query: 35  TDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLE 94
           + V R+  E V T  GV V VT   QVK+   EE I +A+E+FLGKS+EEI++ +   LE
Sbjct: 6   SMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLE 65

Query: 95  GHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
           GHLRA++GT+TVEEI +DRD+FA  V+EV APD+ +MG+E+ SFTI
Sbjct: 66  GHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTI 111

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128

>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 217 TDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLE 276
           + V R+  E V T  GV V VT   QVK+   EE I +A+E+FLGKS+EEI++ +   LE
Sbjct: 6   SMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLE 65

Query: 277 GHLRAILAPLAKTEEI 292
           GHLRA++  +   EEI
Sbjct: 66  GHLRAVVGTM-TVEEI 80

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 10/129 (7%)

Query: 22  TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 72
            V GG A    +   ++R+SL         ++V T  G+P+ V   A VKI    + I +
Sbjct: 63  VVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIAT 122

Query: 73  ASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRM 131
           A+E+F GK S+E++++    TLEG LRA+L  +TVEE+ +DR  FA +V+EV   D+ +M
Sbjct: 123 AAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKM 182

Query: 132 GIEILSFTI 140
           G+ + S  I
Sbjct: 183 GLVLDSLAI 191

Length = 548

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 33  MVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHT 92
           +      +  ++V T   VPV V    Q +++   +               E ++ +   
Sbjct: 4   LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKA-------LYNVRDPEDEEALRQL 56

Query: 93  LEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
            +  LR+++G +T++E+++DRD+ A+ VRE    D+ + GIE++   I
Sbjct: 57  AQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRI 104

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 35  TDVQRISLEDVETLQ---GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILH 91
           T +Q + +    T+    GVPV V  T Q ++    +L+ + + +      E++Q+ +  
Sbjct: 40  TRLQTLEVTVDITVLTKDGVPVNVDVTVQYRVEDPAKLVANYTGE------EDLQELLRP 93

Query: 92  TLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE 142
            +   LR ++   T++E++ +R++ A  V+E    ++ + G+EI    I +
Sbjct: 94  LVRSALREVIARYTLDELLSNREEIAQEVKEALQEELEKYGLEIEDVQITD 144

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 204 TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 254
            V GG A    +   ++R+SL         ++V T  G+P+ V   A VKI    + I +
Sbjct: 63  VVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIAT 122

Query: 255 ASEQFLGK-SKEEIQKTILHTLEGHLRAILAPLAKTEEIV-LLGGNDHVTNDITRLVAQ- 311
           A+E+F GK S+E++++    TLEG LRA+LA +   E     LG    V   +   +++ 
Sbjct: 123 AAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKM 182

Query: 312 -LPPAVQALTGVDISKIQ-------------RREKELTATVKLPAEAECYRLETLAEAKK 357
            L     A+  ++ +  +             RR  ++    ++ AE E  +   +A A+ 
Sbjct: 183 GLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEI-AENEAEKETEIAIAEA 241

Query: 358 IQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRL--KAQVFKQYGDAAVMALVLDA 415
            +  +L + E  +  +   A+ T    +  AE +      KA+  ++   A ++A     
Sbjct: 242 NRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQ 301

Query: 416 LPKIAAEVAAPLAKTEE 432
             K  AE     AK  E
Sbjct: 302 EEKAQAEQEVQHAKALE 318

Length = 548

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 303 NDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSI- 361
           N    + AQ   AV+       +  +  E E      L A AE        E  +I    
Sbjct: 360 NIAEAIGAQAEAAVE-------TARETEEAERAEQAALVAAAE----AAEQEQVEIAVRA 408

Query: 362 ELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMAL---VLDALPK 418
           E AKAEA    ++  A+A A    G+AEA+  R  A+  +  GDAA   L   ++ ALP+
Sbjct: 409 EAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPE 468

Query: 419 IAAEVAAPLAKTEEI-VLLGGN 439
           +A E A P+   +   V + G 
Sbjct: 469 VAEEAAQPMKNIDSEKVRVIGG 490

Length = 548

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	467
KOG2668|consensus	428		100.0
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	99.97
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	99.97
PRK11029	334	FtsH protease regulator HflC; Provisional	99.97
KOG2620|consensus	301		99.97
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	99.97
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	99.96
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	99.96
PRK10930	419	FtsH protease regulator HflK; Provisional	99.95
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	99.92
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	99.91
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	99.9
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	99.88
KOG2621|consensus	288		99.85
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	99.85
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.83
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.81
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.77
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	99.71
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	99.66
KOG2668|consensus	428		99.66
KOG2620|consensus	301		99.65
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.65
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	99.64
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.63
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	99.62
PRK10930	419	FtsH protease regulator HflK; Provisional	99.6
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	99.59
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	99.58
PRK11029	334	FtsH protease regulator HflC; Provisional	99.58
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	99.46
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	99.43
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.43
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	99.42
KOG2621|consensus	288		99.3
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	99.17
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.14
KOG3090|consensus	290		98.98
smart00244	160	PHB prohibitin homologues. prohibitin homologues	98.8
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	98.79
KOG3083|consensus	271		98.74
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	98.57
KOG2962|consensus	322		98.09
PF13421	211	Band_7_1: SPFH domain-Band 7 family	98.05
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	97.72
PTZ00491	850	major vault protein; Provisional	97.43
KOG3083|consensus	271		97.07
KOG3090|consensus	290		96.85
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	95.95
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	95.77
KOG2962|consensus	322		95.61
PTZ00491	850	major vault protein; Provisional	95.36
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	91.01
PRK01558	198	V-type ATP synthase subunit E; Provisional	89.88
PRK01558	198	V-type ATP synthase subunit E; Provisional	89.87
PRK06568	154	F0F1 ATP synthase subunit B; Validated	83.79
PRK01005	207	V-type ATP synthase subunit E; Provisional	83.61
PRK03963	198	V-type ATP synthase subunit E; Provisional	83.13
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	82.67
PRK01005	207	V-type ATP synthase subunit E; Provisional	82.14
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	80.84

>KOG2668|consensus

Probab=100.00  E-value=6.4e-58  Score=447.73  Aligned_cols=359  Identities=45%  Similarity=0.565  Sum_probs=315.7

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEc--CcHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM--KAEEL   69 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~--d~~~~   69 (467)
                      +|+||++|+||| || ...++.+.+||.|.|   |++++||+         ++++|++|+|++|.++++++|.  |+.+.
T Consensus         4 ~~~~~~~l~itg-~g-~~~~~lv~~~wvf~w---q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~el   78 (428)
T KOG2668|consen    4 VAGASQYLAITG-GG-IEDIKLVKKSWVFPW---QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADEL   78 (428)
T ss_pred             cCCccceEEeec-cc-ccCceecccceeeee---eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHH
Confidence            689999999996 55 566777778876666   89999987         7799999999999999999996  34588


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecC-------
Q psy1054          70 IQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE-------  142 (467)
Q Consensus        70 i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~-------  142 (467)
                      +..||+.|||++..++..++..+|+||+|.++|+||++|||.||++|...|++.+..++..|||.|.|++|+|       
T Consensus        79 L~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~  158 (428)
T KOG2668|consen   79 LLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH  158 (428)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             --------------------------------cHHHHHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCcccee
Q psy1054         143 --------------------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLL  190 (467)
Q Consensus       143 --------------------------------~a~~~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~  190 (467)
                                                      ++.+..+.+.+++.+++.|+.++|+++++++.++.|+++++++     
T Consensus       159 ~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aE-----  233 (428)
T KOG2668|consen  159 EYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAE-----  233 (428)
T ss_pred             HHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHH-----
Confidence                                            2334556667777888889999999999999999999888888     


Q ss_pred             EeeccccCCCcceEEecCceeeeeeeeeeeecccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHH
Q psy1054         191 VVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKT  270 (467)
Q Consensus       191 vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~  270 (467)
                                                                        +++    +|+ ++.+..+.- ...++++..
T Consensus       234 --------------------------------------------------A~l----Aye-lqaak~kq~-i~~e~~qV~  257 (428)
T KOG2668|consen  234 --------------------------------------------------ADL----AYE-LQAAKTKQA-IREEEIQVA  257 (428)
T ss_pred             --------------------------------------------------HHH----HHH-HHHHHHHHH-HHhhhhhHH
Confidence                                                              444    555 444443332 222233222


Q ss_pred             HHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHHhhCChhhhhhccccHHHHHHHHHHhhhcccccchhhhHHHH
Q psy1054         271 ILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLE  350 (467)
Q Consensus       271 ~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~  350 (467)
                      +.+                                 | .++        +.++++|..++.++|.|.+++||||++++..
T Consensus       258 vVE---------------------------------r-~kq--------vAv~eqEiqr~~~el~A~vR~paeAe~~r~~  295 (428)
T KOG2668|consen  258 VVE---------------------------------R-TKQ--------VAVREQEIQRRVEELNATVRTPAEAEVERET  295 (428)
T ss_pred             HHH---------------------------------H-HHH--------HHHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Confidence            222                                 2 233        8888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCC
Q psy1054         351 TLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKT  430 (467)
Q Consensus       351 ~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~  430 (467)
                      ..|||++...+.+|+|||+.+|.+|+|||.+|.+.|.|+|+.|+++++++..|.+++...+++++||.|+..++.||++.
T Consensus       296 klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp~Ia~~ia~plakt  375 (428)
T KOG2668|consen  296 KLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALPMIAAEIAAPLAKT  375 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCC------chhHHHHHHHhhchhhhhhhcCCcCCC
Q psy1054         431 EEIVLLGGND------HVTNDITRLVAQLPPAVQALTGVDISK  467 (467)
Q Consensus       431 ~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~tG~d~~~  467 (467)
                      |||+||++|+      +++++|++++..||++|..+||+|+++
T Consensus       376 nkI~v~s~g~~~~g~~k~t~dV~~l~~~LP~~v~~ltgv~~sq  418 (428)
T KOG2668|consen  376 NKISVWSHGGGQMGNAKVTGDVAGLYKMLPPSVDTLTGVDGSQ  418 (428)
T ss_pred             CeEEEEecCCccccchhhHHHHHHHHHhCcHHHhhhccccccc
Confidence            9999998873      899999999999999999999999975

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=302.84  Aligned_cols=418  Identities=27%  Similarity=0.300  Sum_probs=253.8

Q ss_pred             CCCCCeEEEEEcccCC-----CCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCc
Q psy1054           1 SLNPCCLLVVSGGCCG-----HTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKA   66 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~-----~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~   66 (467)
                      +||||++||++|++.|     ....+++.||+||++|+||.+.++||         ..++|+||+|++++++++++|.|+
T Consensus        37 ~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~  116 (548)
T COG2268          37 IARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDT  116 (548)
T ss_pred             ecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEecCC
Confidence            5899999999986532     24689999999999999999999987         678999999999999999999999


Q ss_pred             HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcHH
Q psy1054          67 EELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAE  145 (467)
Q Consensus        67 ~~~i~~aa~~flg~-~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a~  145 (467)
                      ...+.+++++|+++ +..++...+.++++++||.++++||+.++++||..|.+.|.+.+..+|.++|+.|+++.|+++.+
T Consensus       117 ~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d  196 (548)
T COG2268         117 FQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDIND  196 (548)
T ss_pred             HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeeccccc
Confidence            99999999999999 77899999999999999999999999999999999999999999999999999999999999432


Q ss_pred             H---------------HHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCce
Q psy1054         146 C---------------EKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWA  210 (467)
Q Consensus       146 ~---------------~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~  210 (467)
                      .               .++-.+-...+.+...|++++.++..++++++...+..+      |.-.+-|            
T Consensus       197 ~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~------v~~q~~~------------  258 (548)
T COG2268         197 TSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELE------VEQQPAG------------  258 (548)
T ss_pred             ccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhh------hhccccc------------
Confidence            2               222222223344555556666666666555555554443      1110000            


Q ss_pred             eeeeeeeeeeecccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         211 WAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       211 f~iP~i~~v~~isl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                       ..|+=.+-..+.+  +.+.          ..+       ....+ +.+.-.....+.....-    .++.+.-+..+..
T Consensus       259 -~~a~~~~~~ki~~--a~~e----------~e~-------~~~~a-e~~~~a~~a~~~Aeq~~----~~~~~~~e~ev~~  313 (548)
T COG2268         259 -KTAEQTREVKIIL--AETE----------AEV-------AAWKA-ETRREAEQAEILAEQAI----QEEKAQAEQEVQH  313 (548)
T ss_pred             -chhhhhhhhhhhc--cHHH----------HHH-------HHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Confidence             0000000000000  0000          000       00000 00000001111100000    0001111111110


Q ss_pred             hHhhhcCC-cc-cc-hhhhHH-HhhCChhhhhhccccHHH---HHHHHHHhh---------------hcccccc-hhhhH
Q psy1054         291 EIVLLGGN-DH-VT-NDITRL-VAQLPPAVQALTGVDISK---IQRREKELT---------------ATVKLPA-EAECY  347 (467)
Q Consensus       291 ~i~~~~~~-~~-~~-~~i~r~-~~~~~~~~~~~~~v~~~~---~~~~~~~l~---------------A~~~k~A-ea~~~  347 (467)
                          .... .+ .. ..+.|. +..|.|..-. ..+...+   ...+.+..+               +.....+ .++++
T Consensus       314 ----~~~~e~~~~rv~~i~r~~e~el~~~~~~-~~~~~~q~~~~~~~~a~an~~~~~~~~~~~~~~~a~e~~~~~~aeq~  388 (548)
T COG2268         314 ----AKALEAREMRVGLIERQKETELEPQERS-YFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQA  388 (548)
T ss_pred             ----hhhhhhhHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhHHHHHHHhhhHhhhcchhhhhhhHHHHHHHHHHHHHH
Confidence                0000 00 00 001110 1112221100 1111000   011111111               0000001 12333


Q ss_pred             HHHHHHHH---HHHHHH---HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHH---HHHHHHHHHHHH
Q psy1054         348 RLETLAEA---KKIQSI---ELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDA---AVMALVLDALPK  418 (467)
Q Consensus       348 ~~~~~Aea---~k~~~i---~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~---a~~~~~ie~l~~  418 (467)
                      ..+..+++   ++-+.-   ..++++++.....+.++|++++.+|+|||++++.++||++.++.+   .+..+.+++||.
T Consensus       389 ~~~~~aea~eqe~v~i~~~~e~~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~  468 (548)
T COG2268         389 ALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPE  468 (548)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33333333   111100   123346777888899999999999999999999999999998887   455678999999


Q ss_pred             HHHHHhCcccCCCcEEEEcCCC----chhHHHH-----HHHhhchhhhhhhcCCcCC
Q psy1054         419 IAAEVAAPLAKTEEIVLLGGND----HVTNDIT-----RLVAQLPPAVQALTGVDIS  466 (467)
Q Consensus       419 ia~~~a~pl~~~~~i~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~tG~d~~  466 (467)
                      ++++.++|+.+||+++|++.+|    ...|++.     ..+..+-+.++.+||+|..
T Consensus       469 ~~~~~~~~~~~i~~~kV~~i~~~~~~st~g~v~a~~~~~~l~~l~~~~~~t~gvd~~  525 (548)
T COG2268         469 VAEEAAQPMKNIDSEKVRVIGGANGGSTAGKVNAGGLGLLLMALLEALKKTTGVDVA  525 (548)
T ss_pred             HHHHhhcccccccceeEEecCCccccccccchhccchHHHHHHHHHHhhccCCCChH
Confidence            9999999999999999997665    1233332     4677777888889999974

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.97  E-value=5.7e-30  Score=253.12  Aligned_cols=234  Identities=21%  Similarity=0.228  Sum_probs=186.4

Q ss_pred             CCeEEEEEcccCCCCcceEEeCCEEEEecccceeE-EEec--------cccccCCCeEEEEEEEEEEEEcCcH--HHHHH
Q psy1054           4 PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQ-RISL--------EDVETLQGVPVTVTGTAQVKIMKAE--ELIQS   72 (467)
Q Consensus         4 p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~-~idl--------~~v~T~D~v~v~Vdav~~~rV~d~~--~~i~~   72 (467)
                      +.+..||+ +||  ++++++.||+||+|||++++. .+|+        .+++|+|+++|.||++++|||.|+.  .++  
T Consensus         1 q~~~~Vv~-rfG--k~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~--   75 (262)
T cd03407           1 QSQVAIIE-RFG--KFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAF--   75 (262)
T ss_pred             CcEEEEEe-ecC--cccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHH--
Confidence            46888999 798  678999999999999999975 5665        5689999999999999999999876  433  


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcHHHHHHHHH
Q psy1054          73 ASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMD  152 (467)
Q Consensus        73 aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a~~~~~a~~  152 (467)
                        .+|.+     ....+.+.++++||+++|+|++++++++|+.|+..|.+.+.+.+.+|||+|++|+|+++.        
T Consensus        76 --~~~~~-----~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~--------  140 (262)
T cd03407          76 --YKLGN-----PEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDID--------  140 (262)
T ss_pred             --HHcCC-----HHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecC--------
Confidence              34422     235788999999999999999999999999999999999999999999999999999865        


Q ss_pred             HHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccccccccCC
Q psy1054         153 IKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQG  232 (467)
Q Consensus       153 a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~Tkdn  232 (467)
                                                      +                                               
T Consensus       141 --------------------------------~-----------------------------------------------  141 (262)
T cd03407         141 --------------------------------P-----------------------------------------------  141 (262)
T ss_pred             --------------------------------C-----------------------------------------------
Confidence                                            2                                               


Q ss_pred             eeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHHhhC
Q psy1054         233 VPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQL  312 (467)
Q Consensus       233 v~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~~~~  312 (467)
                                     +.. +..                                                          
T Consensus       142 ---------------p~~-v~~----------------------------------------------------------  147 (262)
T cd03407         142 ---------------DAE-VKR----------------------------------------------------------  147 (262)
T ss_pred             ---------------CHH-HHH----------------------------------------------------------
Confidence                           111 211                                                          


Q ss_pred             ChhhhhhccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy1054         313 PPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADR  392 (467)
Q Consensus       313 ~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~  392 (467)
                                      +|+..+.|++      ++.+.+.+|||++.+.+..|+|++++.+.+|+|+|++++..++++++.
T Consensus       148 ----------------A~~~~~~A~~------~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~  205 (262)
T cd03407         148 ----------------AMNEINAAQR------QRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRES  205 (262)
T ss_pred             ----------------HHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                            2333333333      233456777788888888888888888888999999999999999999


Q ss_pred             HHHHHHHHcccc-----HHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCC
Q psy1054         393 MRLKAQVFKQYG-----DAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGN  439 (467)
Q Consensus       393 ~~~~aeA~~~~~-----~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~  439 (467)
                      +..+.+++...+     +..+..+|+|+|.+|+++      .. |+.+++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~------~~-kviv~p~~  250 (262)
T cd03407         206 ILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRS------SS-TVVFRPHG  250 (262)
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhC------CC-CEEEecCC
Confidence            999998873322     234568999999999876      44 88888765

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=99.97  E-value=6e-29  Score=242.43  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=118.7

Q ss_pred             CCCCCeEEEEEcccCCCCcce-EEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKL-TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELI   70 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~r-vv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i   70 (467)
                      +|+|++..|++ +||  +..+ ++.||+||+|||++++..+|+         ..++|+|+++|.|+++++|||.||..++
T Consensus         3 iV~~ge~~Vv~-~~G--k~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~   79 (242)
T cd03405           3 IVDEGEQAVVL-RFG--EVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFY   79 (242)
T ss_pred             EeCCCeEEEEE-EcC--ccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHH
Confidence            58999999999 688  3445 578999999999999998886         6789999999999999999999887654


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh-HHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054          71 QSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD-RDQFASLVREVAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus        71 ~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d-R~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                      ..    + +...+.....+.+.+.+.+|+++|+|++++++++ |+.|.+.+++.+.+.+.+|||+|++|+|+++.
T Consensus        80 ~~----~-~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~  149 (242)
T cd03405          80 QA----V-GGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRID  149 (242)
T ss_pred             HH----h-cChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEecc
Confidence            32    2 3333444688999999999999999999999987 99999999999999999999999999998865

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=99.97  E-value=2.2e-28  Score=248.19  Aligned_cols=243  Identities=15%  Similarity=0.148  Sum_probs=189.2

Q ss_pred             CCCCCeEEEEEcccCCCCcce-------EEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEc
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKL-------TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM   64 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~r-------vv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~   64 (467)
                      +++|++..||+ +||  ++.+       ++.|||||+|||+++|.++|+         +.++|+|+++|+||++++|||.
T Consensus        22 iV~ege~gVV~-rFG--k~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~   98 (334)
T PRK11029         22 VVKEGERGIVL-RFG--KVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRIS   98 (334)
T ss_pred             EECCCeEEEEE-ECC--ceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEEC
Confidence            47999999999 898  3444       478999999999999999886         6789999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhh----------------
Q psy1054          65 KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPD----------------  127 (467)
Q Consensus        65 d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~----------------  127 (467)
                      ||..+++.    +-+.+.......+.+.+++.||+++|++|++++++ +|..++..+++.++..                
T Consensus        99 Dp~~~~~~----~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~  174 (334)
T PRK11029         99 DFSRYYLA----TGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDA  174 (334)
T ss_pred             CHHHHHHH----hcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence            98776532    22334556778899999999999999999999997 6999999999998854                


Q ss_pred             -----------------------hhcCCeEEEEEEecCcHHHHHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhcc
Q psy1054         128 -----------------------VGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFL  184 (467)
Q Consensus       128 -----------------------l~~~GleI~~v~Ik~~a~~~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a  184 (467)
                                             +.+|||+|.+|+|++..                                        
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~----------------------------------------  214 (334)
T PRK11029        175 IASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQIN----------------------------------------  214 (334)
T ss_pred             cccchhhcccccccccccccccccccCCcEEEEEEEEecC----------------------------------------
Confidence                                   35566666666666543                                        


Q ss_pred             CccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCH
Q psy1054         185 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSK  264 (467)
Q Consensus       185 ~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~  264 (467)
                      .                                                              +.+ +            
T Consensus       215 ~--------------------------------------------------------------P~~-v------------  219 (334)
T PRK11029        215 L--------------------------------------------------------------PTE-V------------  219 (334)
T ss_pred             C--------------------------------------------------------------CHH-H------------
Confidence            1                                                              111 1            


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHHhhCChhhhhhccccHHHHHHHHHHhhhcccccchh
Q psy1054         265 EEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEA  344 (467)
Q Consensus       265 ~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea  344 (467)
                                                                                    ..++++++.|+++     
T Consensus       220 --------------------------------------------------------------~~ai~~~~~Aere-----  232 (334)
T PRK11029        220 --------------------------------------------------------------SDAIYNRMRAERE-----  232 (334)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHH-----
Confidence                                                                          1244455555542     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHh
Q psy1054         345 ECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVA  424 (467)
Q Consensus       345 ~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a  424 (467)
                       +.+....|||++++..+.++|+.+..+..|+|++++....|+++|++++.+++||.+..+-+...++++++.++...  
T Consensus       233 -~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~~~--  309 (334)
T PRK11029        233 -AVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFSG--  309 (334)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--
Confidence             33456677888888888888888888888888888888999999999999999999888888888999999877543  


Q ss_pred             CcccCCCcEEEEcCCC
Q psy1054         425 APLAKTEEIVLLGGND  440 (467)
Q Consensus       425 ~pl~~~~~i~~~~~~~  440 (467)
                           .+++.|++.++
T Consensus       310 -----~~~~~vl~~~~  320 (334)
T PRK11029        310 -----NQDVMVLSPDS  320 (334)
T ss_pred             -----CCcEEEECCCh
Confidence                 34666777764

>KOG2620|consensus

Probab=99.97  E-value=5.2e-31  Score=250.81  Aligned_cols=259  Identities=19%  Similarity=0.161  Sum_probs=210.1

Q ss_pred             CCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec----------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054           2 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL----------EDVETLQGVPVTVTGTAQVKIMKAEELIQ   71 (467)
Q Consensus         2 ~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl----------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~   71 (467)
                      +|+.+++||. +||  ++++++.||+||..||++++.++-+          ++.+|+|||.+.+|++.||||.||...  
T Consensus        12 VpQ~~a~VvE-R~G--kF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~--   86 (301)
T KOG2620|consen   12 VPQQEAAVVE-RFG--KFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYAD--   86 (301)
T ss_pred             echhHhHHHH-Hhh--hhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccccc--
Confidence            7899999999 898  7999999999999999999887532          889999999999999999999998652  


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH--HHHHH
Q psy1054          72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEA--ECEKS  149 (467)
Q Consensus        72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a--~~~~~  149 (467)
                      .|   |+|  .+.-...+.+..++++|+.+|+|||+.+|..|+.++..|.+.++..+..||+++..+.|+|+.  ...++
T Consensus        87 dA---sYg--venp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~  161 (301)
T KOG2620|consen   87 DA---SYG--VENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKR  161 (301)
T ss_pred             cc---ccc--cCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHH
Confidence            12   223  234566778888999999999999999999999999999999999999999999999998864  11222


Q ss_pred             HHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccccccc
Q psy1054         150 AMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVET  229 (467)
Q Consensus       150 a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~T  229 (467)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (301)
T KOG2620|consen  162 --------------------------------------------------------------------------------  161 (301)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHH
Q psy1054         230 LQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLV  309 (467)
Q Consensus       230 kdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~  309 (467)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (301)
T KOG2620|consen  162 --------------------------------------------------------------------------------  161 (301)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhCChhhhhhccccHHHHHHHHHHhhhccc-----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy1054         310 AQLPPAVQALTGVDISKIQRREKELTATVK-----LPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEA  384 (467)
Q Consensus       310 ~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~-----k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~  384 (467)
                                         +|+.|-.|+|.     .++||+|+.+|+.|||+|++.++.-+|.+......+.++|++|.+
T Consensus       162 -------------------AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~  222 (301)
T KOG2620|consen  162 -------------------AMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILA  222 (301)
T ss_pred             -------------------HHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHH
Confidence                               22222223322     247899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccc-H----HHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCCchhHHHHHHHhhchhhhhh
Q psy1054         385 LGRAEADRMRLKAQVFKQYG-D----AAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQA  459 (467)
Q Consensus       385 ~~~AeA~~~~~~aeA~~~~~-~----~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (467)
                      .+++-+.++.+++..|.+.+ .    .....++|-++.+||+.        ++.++++.|   .|++.++.+|...++..
T Consensus       223 ~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~--------sntv~lP~~---pg~v~~mvaQa~~~~~~  291 (301)
T KOG2620|consen  223 FADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKK--------SNTVFLPHG---PGDVRDMVAQALNGYKQ  291 (301)
T ss_pred             HhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhccc--------CceEEecCC---CCcHHHHHHHHHHHHHh
Confidence            99999999999999998432 2    23558888888887765        456777765   56666677776666554


Q ss_pred             h
Q psy1054         460 L  460 (467)
Q Consensus       460 ~  460 (467)
                      +
T Consensus       292 ~  292 (301)
T KOG2620|consen  292 L  292 (301)
T ss_pred             h
Confidence            3

>TIGR01933 hflK HflK protein

Probab=99.97  E-value=3.1e-28  Score=240.37  Aligned_cols=132  Identities=18%  Similarity=0.204  Sum_probs=117.0

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ   71 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~   71 (467)
                      +|+|++..||+ +||  +.++++.||+||+|||++++..+|+         ..++|+|+++|.||++++|||.||..+++
T Consensus         3 iV~~ge~~Vv~-~fG--k~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~   79 (261)
T TIGR01933         3 TIGEAERGVVL-RFG--KYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLF   79 (261)
T ss_pred             EeCCCeEEEEE-EcC--ccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHH
Confidence            58999999999 687  5778999999999999999998886         35889999999999999999998876543


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecCcH
Q psy1054          72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGEEA  144 (467)
Q Consensus        72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~~a  144 (467)
                      .         .......+.+.+++.+|+++|+++++++++ +|+.|+..|.+.++..+..|  ||+|++|+|+++.
T Consensus        80 ~---------~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~  146 (261)
T TIGR01933        80 S---------VENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSAR  146 (261)
T ss_pred             h---------CCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecC
Confidence            1         123557799999999999999999999998 89999999999999999966  9999999999865

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>TIGR01932 hflC HflC protein

Probab=99.96  E-value=1.6e-27  Score=241.68  Aligned_cols=137  Identities=15%  Similarity=0.206  Sum_probs=115.2

Q ss_pred             CCCCCeEEEEEcccCCCCcce-------EEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEc
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKL-------TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM   64 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~r-------vv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~   64 (467)
                      +|+|+++.||+ +||+  +.+       ++.||+||+|||++++.++|+         .+++|+|+++|+||++++|||.
T Consensus        22 iV~~ge~gVv~-~fGk--~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~   98 (317)
T TIGR01932        22 IIKEGERGIIT-RFGK--ILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIE   98 (317)
T ss_pred             EECCCeEEEEE-ecCc--eeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEEC
Confidence            58999999999 5883  333       457999999999999999987         5789999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh-HHHH---------------------------
Q psy1054          65 KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD-RDQF---------------------------  116 (467)
Q Consensus        65 d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d-R~~~---------------------------  116 (467)
                      |+.+++.    ++-+.+.+.....+.+.++++||+++|++|++|++++ |+.+                           
T Consensus        99 d~~~~~~----~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~  174 (317)
T TIGR01932        99 DFKKYYL----STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGRE  174 (317)
T ss_pred             CHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhh
Confidence            8877543    2212245567788999999999999999999999974 5544                           


Q ss_pred             --HHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054         117 --ASLVREVAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus       117 --~~~v~~~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                        +..+++.+...+.+||++|.+|.|+++.
T Consensus       175 ~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~  204 (317)
T TIGR01932       175 ILAREISQIANSQLKDIGIEVVDVRIKKIN  204 (317)
T ss_pred             hHHHHHHHHHHHHHhcCCcEEEEEEEEecC
Confidence              6788888999999999999999999865

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=99.96  E-value=3.6e-27  Score=233.38  Aligned_cols=132  Identities=20%  Similarity=0.247  Sum_probs=113.4

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEe-------------c---------cccccCCCeEEEEEEE
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRIS-------------L---------EDVETLQGVPVTVTGT   58 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~id-------------l---------~~v~T~D~v~v~Vdav   58 (467)
                      ++||++..||+ +||  +.++++.||+||+|||++++.+++             .         ..++|+|+++|.||++
T Consensus        17 ~V~~ge~gVV~-~fG--k~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~   93 (266)
T cd03404          17 IVQPGERGVVL-RFG--KYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFA   93 (266)
T ss_pred             EECCCceEEeE-EcC--ccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEE
Confidence            47999999999 687  355889999999999999876442             1         4688999999999999


Q ss_pred             EEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh-HHHHHHHHHHHHhhhhhcC--CeEE
Q psy1054          59 AQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD-RDQFASLVREVAAPDVGRM--GIEI  135 (467)
Q Consensus        59 ~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d-R~~~~~~v~~~~~~~l~~~--GleI  135 (467)
                      ++|||.||..+++.      .   ......+.+.+++++|+++|++|+++++++ |+.|++.|++.+...+..|  |++|
T Consensus        94 v~yrI~d~~~~~~~------~---~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v  164 (266)
T cd03404          94 VQYRISDPYDYLFN------V---RDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEI  164 (266)
T ss_pred             EEEEECCHHHHHhh------C---CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEE
Confidence            99999988765431      1   124568999999999999999999999997 9999999999999999976  9999


Q ss_pred             EEEEecCcH
Q psy1054         136 LSFTIGEEA  144 (467)
Q Consensus       136 ~~v~Ik~~a  144 (467)
                      .+|+|+++.
T Consensus       165 ~~v~i~~i~  173 (266)
T cd03404         165 VGVNLQDAD  173 (266)
T ss_pred             EEEEEEeCC
Confidence            999999865

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=99.95  E-value=1.7e-25  Score=233.09  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=117.8

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ   71 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~   71 (467)
                      +|+|+|..||+ +||  ++++++.|||||++||+++|.++|+         +.++|+|++.|.||++++|||.||..+++
T Consensus        99 iV~e~E~gVV~-rFG--k~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf  175 (419)
T PRK10930         99 TIKEAERGVVT-RFG--KFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLF  175 (419)
T ss_pred             EECCCeEEEEE-ECC--cCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHH
Confidence            47899999999 898  5778999999999999999999875         56789999999999999999999877653


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecCcH
Q psy1054          72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGEEA  144 (467)
Q Consensus        72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~~a  144 (467)
                      ..         ......+.++++++||+++|+++++++++ +|+.++..+++.+.+.+..|  ||+|++|+|++..
T Consensus       176 ~v---------~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~  242 (419)
T PRK10930        176 SV---------TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAAR  242 (419)
T ss_pred             hc---------cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecC
Confidence            21         23567899999999999999999999998 59999999999999999987  9999999999865

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-23  Score=209.63  Aligned_cols=132  Identities=19%  Similarity=0.304  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEe-CCEEEEeccc---cee-EEEec----------cccccCCCeEEEEEEEEEEEEcC
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVV-GGWAWAWWMV---TDV-QRISL----------EDVETLQGVPVTVTGTAQVKIMK   65 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~-~Gl~f~iP~i---q~v-~~idl----------~~v~T~D~v~v~Vdav~~~rV~d   65 (467)
                      +++|++..++. +||  ++.+++. ||+||+|||+   +.+ .++++          +.++|+|+++|+||++++|||.|
T Consensus        23 ~v~~~~~~vv~-r~G--~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d   99 (291)
T COG0330          23 VVKEGERGVVL-RFG--RYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTD   99 (291)
T ss_pred             EEcCCceEEEE-Eec--ceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcC
Confidence            36899999999 787  5788999 9999999993   333 33333          66889999999999999999999


Q ss_pred             cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHH-HHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054          66 AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRD-QFASLVREVAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus        66 ~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~-~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                      +..+++.    +     +.....+.+.++++||+++|+|++++++++|+ .|+..+.+.++..+.+||++|.+|+|++..
T Consensus       100 ~~~~~~~----v-----~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~  170 (291)
T COG0330         100 PQKAVYN----V-----ENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDID  170 (291)
T ss_pred             HHHHHHh----c-----CCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecC
Confidence            8865432    1     22678899999999999999999999999888 999999999999999999999999999865

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=99.91  E-value=4.7e-23  Score=197.39  Aligned_cols=167  Identities=14%  Similarity=0.194  Sum_probs=138.9

Q ss_pred             CCCCeEEEEEcccCCCCcceEEeCCEEEEeccccee-EEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054           2 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDV-QRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ   71 (467)
Q Consensus         2 ~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v-~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~   71 (467)
                      |+|++..|++ +||  +..+++.||+||+|||++++ ..+|+         +.++|+|++++.++++++|||.||..+++
T Consensus         1 V~~ge~~Vv~-~~G--~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~   77 (215)
T cd03403           1 VPQYERGVVE-RLG--KYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVY   77 (215)
T ss_pred             CCcceEEEEE-EcC--cCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHh
Confidence            6899999999 787  45667889999999999999 88886         56899999999999999999998876542


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc------HH
Q psy1054          72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE------AE  145 (467)
Q Consensus        72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~------a~  145 (467)
                          .+     +.....+.+.+++.+|+++|++++++++++|+.|++.|++.+...+.+|||+|++|.|+++      ..
T Consensus        78 ----~~-----~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~  148 (215)
T cd03403          78 ----GV-----EDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQE  148 (215)
T ss_pred             ----cC-----CCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHH
Confidence                11     2245678889999999999999999999999999999999999999999999999999993      22


Q ss_pred             HHHHHHHHHH--hhhHHHHHHHhHHHHHHhhhHHHHh
Q psy1054         146 CEKSAMDIKY--ATDSKIENNARLFKLQKASFDAEIS  180 (467)
Q Consensus       146 ~~~~a~~a~~--~a~~~iAea~r~~~i~~Aea~~e~~  180 (467)
                      +..+.+.++.  .+....|++++++.+..+++.++..
T Consensus       149 ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~  185 (215)
T cd03403         149 AMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAA  185 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence            3333444443  4567778888888888888887654

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=99.90  E-value=9.6e-23  Score=192.51  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=118.9

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec--------cccccCCCeEEEEEEEEEEEEcCcHHHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------EDVETLQGVPVTVTGTAQVKIMKAEELIQS   72 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl--------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~   72 (467)
                      ++||++..|+. ++|+....+++.||+||++||++++..+|+        ..+.|+|+++|+++.+++|+|.++...  .
T Consensus         4 ~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~--~   80 (196)
T cd03401           4 NVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP--R   80 (196)
T ss_pred             EECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH--H
Confidence            47999999998 677422224889999999999999999887        456799999999999999999643211  1


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHH
Q psy1054          73 ASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSA  150 (467)
Q Consensus        73 aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a  150 (467)
                      . .+++|.+  .....+.+.+.+.+|+++|+||++|++++|+.|+..|++.+.+.+.+|||.|.+++|+++  ....+++
T Consensus        81 ~-~~~~~~~--~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~a  157 (196)
T cd03401          81 I-YQNLGED--YDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKA  157 (196)
T ss_pred             H-HHHhCcc--hHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHH
Confidence            2 2223532  345678899999999999999999999999999999999999999999999999999994  2334444


Q ss_pred             HHHHH
Q psy1054         151 MDIKY  155 (467)
Q Consensus       151 ~~a~~  155 (467)
                      ++.+.
T Consensus       158 i~~k~  162 (196)
T cd03401         158 VEAKQ  162 (196)
T ss_pred             HHHHH
Confidence            44443

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.88  E-value=1.4e-21  Score=188.28  Aligned_cols=139  Identities=16%  Similarity=0.214  Sum_probs=117.7

Q ss_pred             CCCCCeEEEEEcccCCCCcceEE-eCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTV-VGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELI   70 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv-~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i   70 (467)
                      +++|+++.|++ +||  ++.+++ .|||||++||++. .++|+         +.+.|+|+.++.|+++++|||.||.+++
T Consensus         4 iV~~ge~~Vv~-rfG--k~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~   79 (219)
T cd03402           4 VVEPNQARVLV-LFG--RYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAV   79 (219)
T ss_pred             EECCCeeEEEE-EcC--cCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHH
Confidence            47999999999 898  466666 7999999999965 66776         6789999999999999999999998765


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-------hHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054          71 QSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-------DRDQFASLVREVAAPDVGRMGIEILSFTIGEE  143 (467)
Q Consensus        71 ~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-------dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~  143 (467)
                      +..         +.....+...++++||+++|+++++++++       +|++++..+++.+.+.+..|||+|.+++|++.
T Consensus        80 ~~v---------~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l  150 (219)
T cd03402          80 FNV---------DDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHL  150 (219)
T ss_pred             HHc---------CCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEee
Confidence            421         22467899999999999999999999986       57999999999999999999999999999994


Q ss_pred             --HHHHHHHHH
Q psy1054         144 --AECEKSAMD  152 (467)
Q Consensus       144 --a~~~~~a~~  152 (467)
                        +.....+|.
T Consensus       151 ~~p~ei~~am~  161 (219)
T cd03402         151 AYAPEIAQAML  161 (219)
T ss_pred             cCCHHHHHHHH
Confidence              333344443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2621|consensus

Probab=99.85  E-value=2.7e-21  Score=186.74  Aligned_cols=178  Identities=14%  Similarity=0.107  Sum_probs=148.6

Q ss_pred             CCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHH
Q psy1054           3 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSA   73 (467)
Q Consensus         3 ~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~a   73 (467)
                      +.-|-+||. |+|.-.....-.||+.|++||+|+..++||         ++.+|+|.+.+.||+++||||.||..++.+ 
T Consensus        59 ~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~-  136 (288)
T KOG2621|consen   59 QEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNN-  136 (288)
T ss_pred             HHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHHHh-
Confidence            445667777 776211112335899999999999999998         899999999999999999999998765431 


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH--HHHHHHH
Q psy1054          74 SEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEA--ECEKSAM  151 (467)
Q Consensus        74 a~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a--~~~~~a~  151 (467)
                              .++.....+-+.+++||+++|+.+|.|++++|+.|..+++..+++.+..||++|.+|+|+|+.  ...+++|
T Consensus       137 --------V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqram  208 (288)
T KOG2621|consen  137 --------VGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAM  208 (288)
T ss_pred             --------ccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhh
Confidence                    345666777778899999999999999999999999999999999999999999999999954  3466677


Q ss_pred             HHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeecccc
Q psy1054         152 DIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCC  197 (467)
Q Consensus       152 ~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~  197 (467)
                      .++       ||+.|++..+...++.|.+..++-..++.++++++.
T Consensus       209 aae-------AeA~reA~Akviaaege~~as~al~~aa~v~~~sp~  247 (288)
T KOG2621|consen  209 AAE-------AEATREARAKVIAAEGEKKASEALKEAADVISESPI  247 (288)
T ss_pred             hch-------hhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCch
Confidence            655       889999999988888888888888889999998654

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.85  E-value=5.7e-20  Score=182.70  Aligned_cols=178  Identities=14%  Similarity=0.135  Sum_probs=143.2

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ   71 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~   71 (467)
                      +++|++..||. +||+ -...++.|||||+|||+++|..++.         ..+.|+||+.|++|.+..|.+.|+.. ++
T Consensus         7 iV~ege~gVV~-RfGk-v~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~-~~   83 (280)
T cd03406           7 KIEEGHVGVYY-RGGA-LLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDS-VY   83 (280)
T ss_pred             EECCCeEEEEE-ECCc-ccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHH-HH
Confidence            47999999999 8872 2245678999999999999987775         45679999999999877777777665 44


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecCc-----
Q psy1054          72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGEE-----  143 (467)
Q Consensus        72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~~-----  143 (467)
                      .+..+| +  .+.....+.+.+...+|.++|+++++++++ +|+.++..+++.+...+..|  ||+|++|+|++.     
T Consensus        84 ~~~~~y-~--~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~  160 (280)
T cd03406          84 DIVKNY-T--ADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA  160 (280)
T ss_pred             HHHHHH-h--HhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence            554444 2  345788999999999999999999999998 79999999999999999988  999999999992     


Q ss_pred             -HHHHHHHHHHHH--h--------hhHHHHHHHhHHHHHHhhhHHHHhhhccC
Q psy1054         144 -AECEKSAMDIKY--A--------TDSKIENNARLFKLQKASFDAEISTAFLN  185 (467)
Q Consensus       144 -a~~~~~a~~a~~--~--------a~~~iAea~r~~~i~~Aea~~e~~~a~a~  185 (467)
                       ..+. +.|.+++  .        +....||++|...+..|++++++..-.-.
T Consensus       161 V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~  212 (280)
T cd03406         161 IRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFG  212 (280)
T ss_pred             HHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHH
Confidence             2333 4555554  2        45677999999999999888887665433

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>smart00244 PHB prohibitin homologues

Probab=99.83  E-value=1.7e-19  Score=163.70  Aligned_cols=133  Identities=17%  Similarity=0.265  Sum_probs=115.6

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ   71 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~   71 (467)
                      +++|+++.|++ ++|+  ..+++.||+||+|||++++..+|+         ..+.|+|++++.+++++.|||.|+..++ 
T Consensus         5 ~V~~g~~~v~~-~~G~--~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~-   80 (160)
T smart00244        5 VVGEGEAGVVE-RLGR--VLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAV-   80 (160)
T ss_pred             EEcccEEEEEE-ecCc--cccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHh-
Confidence            47999999999 5873  455888999999999999999887         5778999999999999999999887643 


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054          72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus        72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                         .++.|.  +  ...+.+.+++++|+++|+++++++++ +|+.|.+.+++.+.+.+.+||++|.+++|+++.
T Consensus        81 ---~~~~~~--~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~  147 (160)
T smart00244       81 ---YRVLDA--D--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIR  147 (160)
T ss_pred             ---hhcCCH--H--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecC
Confidence               233332  2  15888999999999999999999999 699999999999999999999999999999953

prohibitin homologues

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.81  E-value=8.1e-20  Score=168.59  Aligned_cols=135  Identities=24%  Similarity=0.336  Sum_probs=86.3

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec--------c---ccccCCCeEEEEEEEEEEEEcCcHHH
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------E---DVETLQGVPVTVTGTAQVKIMKAEEL   69 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl--------~---~v~T~D~v~v~Vdav~~~rV~d~~~~   69 (467)
                      +|||+++.|++ ++|  +...++.||+||+|||++++..+|+        .   .+.|+|++++.++++++|+|.++..+
T Consensus         2 ~V~~g~~~V~~-~~G--~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~   78 (179)
T PF01145_consen    2 TVPPGEVGVVV-RFG--KVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKF   78 (179)
T ss_dssp             ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCC
T ss_pred             EeCCCEEEEEE-ECC--eEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHH
Confidence            58999999998 476  3455888999999999999998776        5   78999999999999999999777664


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054          70 IQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE  143 (467)
Q Consensus        70 i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~  143 (467)
                      +    .+| +.+.+.....+.+.+.+++|+++++|++.+++++|..|.+.+.+.+.+.+.+||++|.+|+|.+.
T Consensus        79 ~----~~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~  147 (179)
T PF01145_consen   79 V----QNY-EGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDI  147 (179)
T ss_dssp             C----CCC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred             H----Hhh-hcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeec
Confidence            3    233 33456789999999999999999999999999999999999999999999999999999999994

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.77  E-value=7.1e-18  Score=149.09  Aligned_cols=102  Identities=55%  Similarity=0.785  Sum_probs=96.4

Q ss_pred             cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054          43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE  122 (467)
Q Consensus        43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~  122 (467)
                      ++++|+|++++.||++++|||.|+.+++..++++|++.+.+.+...+.++++++||+++|+||+++++++|+.|++.|.+
T Consensus        14 q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~~~R~~i~~~i~~   93 (128)
T cd03399          14 EAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQE   93 (128)
T ss_pred             cceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence            88999999999999999999999999888888888776667899999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCeEEEEEEecCcH
Q psy1054         123 VAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus       123 ~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                      .+..++.+||++|.+++|+++.
T Consensus        94 ~v~~~~~~~Gi~i~~v~I~~i~  115 (128)
T cd03399          94 VVAPDLNKMGLELDSFTIKDIT  115 (128)
T ss_pred             HHHHHHHHCCCEEEEEeeEEec
Confidence            9999999999999999999953

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.71  E-value=1.6e-16  Score=157.22  Aligned_cols=183  Identities=20%  Similarity=0.186  Sum_probs=126.7

Q ss_pred             eeEeeccccCCCcceEEecCceeeeeeeeeee-eccc--------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHh
Q psy1054         189 LLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQ-RISL--------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQF  259 (467)
Q Consensus       189 ~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~-~isl--------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~  259 (467)
                      ..||+.  +| ++.+++.||+||++||++++. .+++        .+++|+||++|+++++++|+|.++..  ..+..++
T Consensus         4 ~~Vv~r--fG-k~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~--~~~~~~~   78 (262)
T cd03407           4 VAIIER--FG-KFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENA--TDAFYKL   78 (262)
T ss_pred             EEEEee--cC-cccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHH--HHHHHHc
Confidence            344554  44 567899999999999999985 4555        26899999999999999999998762  1122233


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHH------HhhC-Chhhhh-hccccHHHHHHHH
Q psy1054         260 LGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRL------VAQL-PPAVQA-LTGVDISKIQRRE  331 (467)
Q Consensus       260 l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~------~~~~-~~~~~~-~~~v~~~~~~~~~  331 (467)
                      .     +....+...+.+.||+++|+|++++   ++++++.++.+|...      .+++ ..+++. .+.+..    ...
T Consensus        79 ~-----~~~~~l~~~~~s~lR~vig~~~l~e---il~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~----~v~  146 (262)
T cd03407          79 G-----NPEEQIQSYVFDVLRARIPKLTLDE---LFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDA----EVK  146 (262)
T ss_pred             C-----CHHHHHHHHHHHHHHHHhcCccHHH---HHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCH----HHH
Confidence            3     1234777788899999999999999   444444555443221      0111 011110 011111    111


Q ss_pred             HHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHc
Q psy1054         332 KELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFK  401 (467)
Q Consensus       332 ~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~  401 (467)
                      +             .......|+-++.+.+.+|||++......|+|+|++....|+|+|++....++++.
T Consensus       147 ~-------------A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~  203 (262)
T cd03407         147 R-------------AMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLR  203 (262)
T ss_pred             H-------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1             12234678888999999999999888999999999999999999999988888754

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>TIGR01933 hflK HflK protein

Probab=99.66  E-value=1.7e-15  Score=149.64  Aligned_cols=230  Identities=16%  Similarity=0.143  Sum_probs=171.5

Q ss_pred             ccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccc---------cccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054         183 FLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQ  253 (467)
Q Consensus       183 ~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~---------~v~Tkdnv~v~v~~~a~~~V~~~~~~i~  253 (467)
                      .++|++..||..  +| ++.+++.||+||++||++++..+++.         .++|+||++|+++++++|+|.|+...+ 
T Consensus         3 iV~~ge~~Vv~~--fG-k~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~-   78 (261)
T TIGR01933         3 TIGEAERGVVLR--FG-KYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL-   78 (261)
T ss_pred             EeCCCeEEEEEE--cC-ccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH-
Confidence            356788888886  56 46688999999999999999877762         589999999999999999999876532 


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccchhhhHH-----H-h--hC-Chhhhh-hccc
Q psy1054         254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVTNDITRL-----V-A--QL-PPAVQA-LTGV  322 (467)
Q Consensus       254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~~~i~r~-----~-~--~~-~~~~~~-~~~v  322 (467)
                              +..++....+...+.+.+|+++|.+++++   +++ +++.++.+|...     . +  +| ..+++. .+.+
T Consensus        79 --------~~~~~~~~~l~~~~~s~lR~vig~~~l~e---il~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~  147 (261)
T TIGR01933        79 --------FSVENPEDSLRQATDSALRGVIGDSTMDD---ILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARP  147 (261)
T ss_pred             --------HhCCCHHHHHHHHHHHHHHHHHhhCcHHH---HHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCC
Confidence                    22234556788888999999999999998   343 334444333211     0 0  11 111111 1333


Q ss_pred             cHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHcc
Q psy1054         323 DISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQ  402 (467)
Q Consensus       323 ~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~  402 (467)
                      ...-..++++.+.|+.      ++.+.+.+||+++...+.+|++++++.+..|+|++++..+.|+|+|+++..+++||.+
T Consensus       148 p~~v~~a~~~~~~a~q------~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~  221 (261)
T TIGR01933       148 PEEVKEAFDDVIIARE------DEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK  221 (261)
T ss_pred             CHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            3444557777777754      3356778888999999999999999999999999999999999999999999999998


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054         403 YGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND  440 (467)
Q Consensus       403 ~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~  440 (467)
                      .++.....++++++.++.       ++.+++.+++.++
T Consensus       222 ~p~~~~~~~~le~~~~~~-------~~~~~~~~~~~~~  252 (261)
T TIGR01933       222 APDVTRERLYLETMEKVL-------SNTRKVLLDDKKG  252 (261)
T ss_pred             ChHHHHHHHHHHHHHHHH-------ccCCeEEEECCCC
Confidence            777777888999998775       3556777776553

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>KOG2668|consensus

Probab=99.66  E-value=3.3e-15  Score=147.88  Aligned_cols=104  Identities=43%  Similarity=0.642  Sum_probs=91.9

Q ss_pred             hccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecC--cHH
Q psy1054         182 AFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMK--AEE  250 (467)
Q Consensus       182 a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~--~~~  250 (467)
                      ..+.|++.++++|  ||-.+++.+.|||.|.|   ++++++|+         ++|+|.+|+|++|.++++++|..  +.+
T Consensus         3 ~~~~~~~~l~itg--~g~~~~~lv~~~wvf~w---q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    3 KVAGASQYLAITG--GGIEDIKLVKKSWVFPW---QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             ccCCccceEEeec--ccccCceecccceeeee---eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            3567888888888  45578899999999988   77777666         36999999999999999999874  457


Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         251 LIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       251 ~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      .+-+|+++|+|+...++...+..+|+||+|.|+|+||++|
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEE  117 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEE  117 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHH
Confidence            8999999999999999999999999999999999999997

>KOG2620|consensus

Probab=99.65  E-value=4.1e-16  Score=149.37  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=142.0

Q ss_pred             CcceEEecCceeeeeeeeeeee-ccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHH
Q psy1054         200 TKKLTVVGGWAWAWWMVTDVQR-ISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQK  269 (467)
Q Consensus       200 ~~~~~~~gG~~f~iP~i~~v~~-isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~  269 (467)
                      +..+++.||+||.+||++++.+ .|+         ++++|+|||.++++++.+++|.++|..  .|.     |.-++-+.
T Consensus        25 kF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~--dAs-----Ygvenp~~   97 (301)
T KOG2620|consen   25 KFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYAD--DAS-----YGVENPEY   97 (301)
T ss_pred             hhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccccc--ccc-----cccCCHHH
Confidence            5679999999999999999997 444         489999999999999999999998861  111     44455556


Q ss_pred             HHHHHHHHHHHHhhccccchhh------H--hh---hc-CCcccchhhhHHHh-hC-ChhhhhhccccHHHHHHHHHHhh
Q psy1054         270 TILHTLEGHLRAILAPLAKTEE------I--VL---LG-GNDHVTNDITRLVA-QL-PPAVQALTGVDISKIQRREKELT  335 (467)
Q Consensus       270 ~~~~~l~~~lR~iiG~m~l~e~------i--~~---~~-~~~~~~~~i~r~~~-~~-~~~~~~~~~v~~~~~~~~~~~l~  335 (467)
                      .+.....+++|+-+|+|+||..      +  .+   ++ ..+.|+-++.|++. .+ ||             ..-...|+
T Consensus        98 aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp-------------~~V~~AM~  164 (301)
T KOG2620|consen   98 AIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPP-------------PSVKRAMN  164 (301)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-------------HHHHHHHH
Confidence            6777778899999999999961      1  11   22 23667777777653 22 22             14444444


Q ss_pred             hcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHcc
Q psy1054         336 ATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQ  402 (467)
Q Consensus       336 A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~  402 (467)
                      -.  -.||-.|.+++.++||+|+++|..|||++++..+.++|.+.-....+.++|+++-..+++-.+
T Consensus       165 ~q--~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~  229 (301)
T KOG2620|consen  165 MQ--NEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAG  229 (301)
T ss_pred             HH--HHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccc
Confidence            43  357888899999999999999999999999999999999999999999999999888887544

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.65  E-value=4.5e-15  Score=156.93  Aligned_cols=111  Identities=34%  Similarity=0.435  Sum_probs=103.4

Q ss_pred             hhhccCccceeEeeccccCC-----CcceEEecCceeeeeeeeeeeecccc---------cccccCCeeEEEeeeeeeee
Q psy1054         180 STAFLNPCCLLVVSGGCCGH-----TKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGVPVTVTGTAQVKI  245 (467)
Q Consensus       180 ~~a~a~~~~~~vv~g~~~~~-----~~~~~~~gG~~f~iP~i~~v~~isl~---------~v~Tkdnv~v~v~~~a~~~V  245 (467)
                      -+..++|+.++|++|+.+|+     ...++|+||+||++|+|+...++||.         .++|+||+|++++++++++|
T Consensus        34 ~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i  113 (548)
T COG2268          34 FYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKI  113 (548)
T ss_pred             eEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEe
Confidence            46788999999999988863     46899999999999999999998883         68999999999999999999


Q ss_pred             cCcHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         246 MKAEELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       246 ~~~~~~i~~a~er~l~~-~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      .++...+.++++||+++ .+.++...+.++++++||+++++||+.+
T Consensus       114 ~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~e  159 (548)
T COG2268         114 GDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEE  159 (548)
T ss_pred             cCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999999999999 8889999999999999999999999986

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=99.64  E-value=4.8e-15  Score=144.56  Aligned_cols=219  Identities=16%  Similarity=0.131  Sum_probs=162.1

Q ss_pred             cCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHH
Q psy1054         184 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS  254 (467)
Q Consensus       184 a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~  254 (467)
                      ++|++..|+..  +|+-...++.||+||++||++++..+|+         +++.|+||++|++++++.|+|.++...+.+
T Consensus         4 V~~ge~~Vv~~--~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~   81 (242)
T cd03405           4 VDEGEQAVVLR--FGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQA   81 (242)
T ss_pred             eCCCeEEEEEE--cCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHH
Confidence            46778888885  5532234689999999999999887776         368999999999999999999987652221


Q ss_pred             HHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcC-CcccchhhhHH------HhhC-Chhhhh-hccccHH
Q psy1054         255 ASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGG-NDHVTNDITRL------VAQL-PPAVQA-LTGVDIS  325 (467)
Q Consensus       255 a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~-~~~~~~~i~r~------~~~~-~~~~~~-~~~v~~~  325 (467)
                          +. ...+.++..+...+.+.+|+++|+|++++   ++++ ++.+...+...      ..++ ..+++. ++.+...
T Consensus        82 ----~~-~~~~~~~~~i~~~~~~~lr~vi~~~~~~e---l~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~  153 (242)
T cd03405          82 ----VG-GEERAAETRLDQIVNSALRAEFGKRTLIE---LVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEE  153 (242)
T ss_pred             ----hc-ChHHHHHHHHHHHHHHHHHHHHccCCHHH---HHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHH
Confidence                21 22333456788888999999999999998   3333 34444333211      0111 111111 2444455


Q ss_pred             HHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccH
Q psy1054         326 KIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGD  405 (467)
Q Consensus       326 ~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~  405 (467)
                      -..++++.++|++++      .+.+..|+|++++.+..|+|++++.+..|+|+|+++..+|+++|++++.+++|++++++
T Consensus       154 i~~ai~~~~~ae~~~------~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~  227 (242)
T cd03405         154 VSESVYRRMRAERER------IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPE  227 (242)
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHH
Confidence            666888888888744      34567788888888999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHH
Q psy1054         406 AAVMALVLDALPK  418 (467)
Q Consensus       406 ~a~~~~~ie~l~~  418 (467)
                      -+..++.+++|..
T Consensus       228 ~~~~~~~l~~~~~  240 (242)
T cd03405         228 FYAFYRSLEAYRN  240 (242)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777888988864

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.63  E-value=4.3e-15  Score=141.27  Aligned_cols=148  Identities=16%  Similarity=0.142  Sum_probs=114.5

Q ss_pred             CCCCCeEEEEEcccCCCCcceEEeCCEEEEe----cccce---------------eEEEec---------------cccc
Q psy1054           1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAW----WMVTD---------------VQRISL---------------EDVE   46 (467)
Q Consensus         1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~i----P~iq~---------------v~~idl---------------~~v~   46 (467)
                      +|+|++..|+. ++|  +..+++.||+|+.+    |+++.               |..++.               ....
T Consensus        18 iV~e~~~av~~-~~G--k~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   94 (207)
T cd03408          18 IVREGQAAVFV-NEG--KVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDS   94 (207)
T ss_pred             EEcCCcEEEEE-ECC--EEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCC
Confidence            47899999999 777  56788888666444    55533               333332               3345


Q ss_pred             cCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh--HHHHHHHHHHHH
Q psy1054          47 TLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD--RDQFASLVREVA  124 (467)
Q Consensus        47 T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d--R~~~~~~v~~~~  124 (467)
                      |.|+++|.++++++|||.||..++.+.+........+.+...+.+.+++++|+++|++++++++.+  |++|++.+++.+
T Consensus        95 ~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l  174 (207)
T cd03408          95 EFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREAL  174 (207)
T ss_pred             ccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHH
Confidence            788999999999999999998876544321111223578899999999999999999999999987  999999999999


Q ss_pred             hhhhhcCCeEEEEEEecCcH--HHHHHHH
Q psy1054         125 APDVGRMGIEILSFTIGEEA--ECEKSAM  151 (467)
Q Consensus       125 ~~~l~~~GleI~~v~Ik~~a--~~~~~a~  151 (467)
                      .+.+..|||+|++|+|+++.  +..++++
T Consensus       175 ~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai  203 (207)
T cd03408         175 APWFASFGLELVSVYIESISYPDEVQKLI  203 (207)
T ss_pred             HHHHHhcCcEEEEEEEEeecCCHHHHHHH
Confidence            99999999999999999953  3344444

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=99.62  E-value=8.1e-15  Score=145.19  Aligned_cols=218  Identities=18%  Similarity=0.136  Sum_probs=162.1

Q ss_pred             hhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecc-------------c---------ccccccCCeeEEEe
Q psy1054         181 TAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRIS-------------L---------EDVETLQGVPVTVT  238 (467)
Q Consensus       181 ~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~is-------------l---------~~v~Tkdnv~v~v~  238 (467)
                      ...++|.+..||+.  +|+- .+++.||+||++||++++..+.             .         ..++|+||++|+++
T Consensus        15 ~~~V~~ge~gVV~~--fGk~-~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd   91 (266)
T cd03404          15 FYIVQPGERGVVLR--FGKY-SRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVE   91 (266)
T ss_pred             EEEECCCceEEeEE--cCcc-ccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEE
Confidence            34678888888885  5533 3789999999999999875321             0         26899999999999


Q ss_pred             eeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcC-CcccchhhhHH-----H-h-
Q psy1054         239 GTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGG-NDHVTNDITRL-----V-A-  310 (467)
Q Consensus       239 ~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~-~~~~~~~i~r~-----~-~-  310 (467)
                      ++++|+|.++...+..         ..+....+...+.+++|+++|++++++   ++++ ++.++..|...     . . 
T Consensus        92 ~~v~yrI~d~~~~~~~---------~~~~~~~l~~~~~~~lr~~i~~~~~~e---il~~~R~~i~~~i~~~l~~~~~~~~  159 (266)
T cd03404          92 FAVQYRISDPYDYLFN---------VRDPEGTLRQAAESAMREVVGRSTLDD---VLTEGREEIAQDVRELLQAILDAYK  159 (266)
T ss_pred             EEEEEEECCHHHHHhh---------CCCHHHHHHHHHHHHHHHHHhhCcHHH---HHHhCHHHHHHHHHHHHHHHhhccC
Confidence            9999999987753321         123345778888999999999999998   3333 34444433211     0 0 


Q ss_pred             -hC-Chhhhh-hccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy1054         311 -QL-PPAVQA-LTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGR  387 (467)
Q Consensus       311 -~~-~~~~~~-~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~  387 (467)
                       ++ ..++.. .+.+...-..++++.+.|+.      ++.+.+.+|++++++.+.+|+|+|++++..|+|+++++.+.|+
T Consensus       160 ~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q------~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae  233 (266)
T cd03404         160 AGIEIVGVNLQDADPPEEVQDAFDDVNKARQ------DRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ  233 (266)
T ss_pred             CCeEEEEEEEEeCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence             11 111111 24444455557777776665      3455677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q psy1054         388 AEADRMRLKAQVFKQYGDAAVMALVLDALPKI  419 (467)
Q Consensus       388 AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~i  419 (467)
                      |+|++++.+++||+++++.....+|++.|+++
T Consensus       234 ~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  265 (266)
T cd03404         234 GEAARFESLLAEYKKAPDVTRERLYLETMEEV  265 (266)
T ss_pred             HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHh
Confidence            99999999999999987777789999999875

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=99.60  E-value=3.8e-14  Score=148.28  Aligned_cols=223  Identities=15%  Similarity=0.132  Sum_probs=161.9

Q ss_pred             hhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHH
Q psy1054         180 STAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEE  250 (467)
Q Consensus       180 ~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~  250 (467)
                      ..-.+.+.+..||..  +| ++.+++.||+||++|||++|..++.         +.++|+|+..|+|+.+++|+|.|+..
T Consensus        96 g~yiV~e~E~gVV~r--FG-k~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~  172 (419)
T PRK10930         96 GFYTIKEAERGVVTR--FG-KFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEK  172 (419)
T ss_pred             eEEEECCCeEEEEEE--CC-cCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHH
Confidence            456778888888885  55 4568999999999999999987755         26799999999999999999999877


Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccc-----------------hhhhHHHhhC
Q psy1054         251 LIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVT-----------------NDITRLVAQL  312 (467)
Q Consensus       251 ~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~-----------------~~i~r~~~~~  312 (467)
                      ++.+         ....+..+...++.+||+++|++++|+   ++. +++.+.                 .+|.+|.-  
T Consensus       173 ~lf~---------v~~~~~~L~~~~~SAlR~vIG~~tlde---vLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I--  238 (419)
T PRK10930        173 YLFS---------VTSPDDSLRQATDSALRGVIGKYTMDR---ILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNF--  238 (419)
T ss_pred             HHHh---------ccCHHHHHHHHHHHHHHHHHccCCHHH---HhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE--
Confidence            4322         234456778888899999999999998   222 122222                 33232210  


Q ss_pred             ChhhhhhccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy1054         313 PPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADR  392 (467)
Q Consensus       313 ~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~  392 (467)
                          + .+.+...-+.+++..+.|..      ++.+.+.+||+++.+.+.+|+++|+.+...|+|.+++..+.|+++|++
T Consensus       239 ----~-di~pP~eV~~Af~~v~~Are------~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r  307 (419)
T PRK10930        239 ----Q-AARPPEEVKAAFDDAIAARE------NEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR  307 (419)
T ss_pred             ----e-ecCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence                0 12222333446777666654      344567788888888888888888888888888888888888888877


Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcC
Q psy1054         393 MRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGG  438 (467)
Q Consensus       393 ~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~  438 (467)
                      ...+-++|++..+-.-..+|+|+|.++..       +.+|| |+++
T Consensus       308 F~~i~~~Y~kaP~vtr~RlYletme~vl~-------~~~kv-ivd~  345 (419)
T PRK10930        308 FAKLLPEYKAAPEITRERLYIETMEKVLG-------HTRKV-LVND  345 (419)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHc-------cCCEE-EEeC
Confidence            66666699876666556899999998854       66775 4444

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=99.59  E-value=1e-14  Score=139.64  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             CccceeEeeccccCCCcceEEecCceeeeeeeeee-eeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHH
Q psy1054         185 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDV-QRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS  254 (467)
Q Consensus       185 ~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v-~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~  254 (467)
                      +|++..|+..  +| +..+++.||+||++||++++ ..+|+         +++.|+|++++++++++.|+|.|+..... 
T Consensus         2 ~~ge~~Vv~~--~G-~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~-   77 (215)
T cd03403           2 PQYERGVVER--LG-KYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVY-   77 (215)
T ss_pred             CcceEEEEEE--cC-cCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHh-
Confidence            4566667664  34 34456899999999999999 77776         26899999999999999999998876321 


Q ss_pred             HHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         255 ASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       255 a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                              ..+++...+...+.+.+|+++|.+++++
T Consensus        78 --------~~~~~~~~l~~~~~~~lr~~i~~~~~~e  105 (215)
T cd03403          78 --------GVEDYRYAISQLAQTTLRSVIGKMELDE  105 (215)
T ss_pred             --------cCCCHHHHHHHHHHHHHHHHHccccHHH
Confidence                    1123445677778899999999999998

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>TIGR01932 hflC HflC protein

Probab=99.58  E-value=5.6e-14  Score=142.82  Aligned_cols=238  Identities=13%  Similarity=0.099  Sum_probs=172.1

Q ss_pred             hhccCccceeEeeccccCCC------cceEEecCceeeeeeeeeeeecccc---------cccccCCeeEEEeeeeeeee
Q psy1054         181 TAFLNPCCLLVVSGGCCGHT------KKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGVPVTVTGTAQVKI  245 (467)
Q Consensus       181 ~a~a~~~~~~vv~g~~~~~~------~~~~~~gG~~f~iP~i~~v~~isl~---------~v~Tkdnv~v~v~~~a~~~V  245 (467)
                      ...++|++..|+++  +|+-      +++++.||+||++||++++..+|++         +++|+||++|+++++++|+|
T Consensus        20 ~~iV~~ge~gVv~~--fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV   97 (317)
T TIGR01932        20 FFIIKEGERGIITR--FGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRI   97 (317)
T ss_pred             EEEECCCeEEEEEe--cCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEE
Confidence            45678899999986  4421      2356789999999999999988872         78999999999999999999


Q ss_pred             cCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcC-Cccc-----------------------
Q psy1054         246 MKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGG-NDHV-----------------------  301 (467)
Q Consensus       246 ~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~-~~~~-----------------------  301 (467)
                      .++.....    +.-+.+.+.....+...+.++||+++|.+++++   ++++ ++.+                       
T Consensus        98 ~d~~~~~~----~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~e---il~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~  170 (317)
T TIGR01932        98 EDFKKYYL----STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKE---IVRSSNDQLDTLVSKLALNRGGKINKIAMTIT  170 (317)
T ss_pred             CCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHH---HHhcchHHhhhhhchhhccccccccccccccc
Confidence            98765221    111112344566778888999999999999998   3332 2222                       


Q ss_pred             ------chhhhHH------HhhC-Chhhhh-hccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1054         302 ------TNDITRL------VAQL-PPAVQA-LTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAE  367 (467)
Q Consensus       302 ------~~~i~r~------~~~~-~~~~~~-~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeae  367 (467)
                            ..+|...      ..++ ..+++. .+.....-..+++..+.|++++      .+...++||++++....|+|+
T Consensus       171 ~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~------~a~~~r~ege~~a~~i~a~A~  244 (317)
T TIGR01932       171 KGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQ------IARMHRSQGEEKAEEILGKAE  244 (317)
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                  1122110      0122 112222 3555567777888888888743      334555778888888888888


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054         368 AWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND  440 (467)
Q Consensus       368 ae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~  440 (467)
                      +++.+..++|+|++...+|+++|++++.+++||+++.+-.-..++++++.++...       .+++.|++.++
T Consensus       245 ~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~~~-------~~~~~vl~~~~  310 (317)
T TIGR01932       245 YEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSFKD-------NQDEKVLSTDS  310 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCC-------CCCEEEECCCc
Confidence            8888888889999999999999999999999999887776779999999988654       45567777664

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=99.58  E-value=3e-14  Score=145.19  Aligned_cols=209  Identities=14%  Similarity=0.138  Sum_probs=125.7

Q ss_pred             hccCccceeEeeccccCCC------cceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeec
Q psy1054         182 AFLNPCCLLVVSGGCCGHT------KKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM  246 (467)
Q Consensus       182 a~a~~~~~~vv~g~~~~~~------~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~  246 (467)
                      -.++|.+..||..  +|+-      ++.++.|||||++|||++|..+++         ++++|+||.+|+|+++++|+|.
T Consensus        21 ~iV~ege~gVV~r--FGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~   98 (334)
T PRK11029         21 FVVKEGERGIVLR--FGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRIS   98 (334)
T ss_pred             EEECCCeEEEEEE--CCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEEC
Confidence            4556777777774  4421      123689999999999999987776         3689999999999999999999


Q ss_pred             CcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccchhhhHHHh-hCC---h--hhhh-
Q psy1054         247 KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVTNDITRLVA-QLP---P--AVQA-  318 (467)
Q Consensus       247 ~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~~~i~r~~~-~~~---~--~~~~-  318 (467)
                      |+.....+    +-+.+.......+...+.+.||+++|++++++   ++. +++.++.++...-. .+.   +  ...+ 
T Consensus        99 Dp~~~~~~----~~~~n~~~a~~~l~~~v~salR~viG~~tlde---i~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~  171 (334)
T PRK11029         99 DFSRYYLA----TGGGDISQAEVLLKRKFSDRLRSEIGRLDVKD---IVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA  171 (334)
T ss_pred             CHHHHHHH----hcCCcHHHHHHHHHHHHHHHHHHHHcccCHHH---HHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence            97663321    11122334445667778899999999999999   343 33444433321000 000   0  0000 


Q ss_pred             --hccccHHHHHHHHH----Hhhh--------cc----cc----cch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1054         319 --LTGVDISKIQRREK----ELTA--------TV----KL----PAE-AECYRLETLAEAKKIQSIELAKAEAWKIKSQG  375 (467)
Q Consensus       319 --~~~v~~~~~~~~~~----~l~A--------~~----~k----~Ae-a~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a  375 (467)
                        .+..+..+.+...+    .|+.        ++    .+    |.+ .+.......||-++.+....|||++++.+.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a  251 (334)
T PRK11029        172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRA  251 (334)
T ss_pred             ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000000000000    0000        00    00    111 11222345567777777889999999888888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHH
Q psy1054         376 LADATASEALGRAEADRMRLKAQV  399 (467)
Q Consensus       376 ~AeA~ai~~~~~AeA~~~~~~aeA  399 (467)
                      +|+.++.+..++|++++....+++
T Consensus       252 ~A~~e~~~~~AeA~~~a~i~~aeg  275 (334)
T PRK11029        252 TADYEVTRTLAEAERQGRIMRGEG  275 (334)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhhh
Confidence            888888888888888777666665

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.46  E-value=1.6e-12  Score=129.66  Aligned_cols=224  Identities=13%  Similarity=0.061  Sum_probs=126.7

Q ss_pred             ccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054         183 FLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ  253 (467)
Q Consensus       183 ~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~  253 (467)
                      .+++....|+..  +|+-...++.|||||++||+++|..++.         ..+.|+||+.|+++....+.+.++.. +.
T Consensus         7 iV~ege~gVV~R--fGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~-~~   83 (280)
T cd03406           7 KIEEGHVGVYYR--GGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDS-VY   83 (280)
T ss_pred             EECCCeEEEEEE--CCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHH-HH
Confidence            345666777774  4533356789999999999999964433         25789999999999866666666655 44


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccchhhhHH------Hh--hC-Chhhhh-hccc
Q psy1054         254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVTNDITRL------VA--QL-PPAVQA-LTGV  322 (467)
Q Consensus       254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~~~i~r~------~~--~~-~~~~~~-~~~v  322 (467)
                      ....+|.   .+.....+...+...+|.++|..++++   +++ +++.+...+...      .+  ++ ..++.. .+.+
T Consensus        84 ~~~~~y~---~~~~~~~I~~~Vrsavr~vig~~tlde---Vis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~  157 (280)
T cd03406          84 DIVKNYT---ADYDKTLIFNKIHHELNQFCSVHTLQE---VYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKI  157 (280)
T ss_pred             HHHHHHh---HhhHHHHHHHHHHHHHHHHhhhCCHHH---HHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCC
Confidence            4443332   234566777888889999999999998   222 223333222110      00  11 000000 1222


Q ss_pred             cHHHHHHHHHHhhhccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhcc--cchHHHHHH
Q psy1054         323 DISKIQRREKELTATVKLP--AEAECYRLETLAEAKKIQSIELAKAEAWKI--------------KSQG--LADATASEA  384 (467)
Q Consensus       323 ~~~~~~~~~~~l~A~~~k~--Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i--------------~~~a--~AeA~ai~~  384 (467)
                      ...-..++ ..|.|+|.+.  |.-...+++..|||+|.+.+.+||++|+-.              +...  +-++.--+.
T Consensus       158 P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (280)
T cd03406         158 PEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLARE  236 (280)
T ss_pred             CHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhh
Confidence            33333456 4777777654  333333566677777777777777655421              1111  111111222


Q ss_pred             H--HHHHHHHHHHHHHHHc-cccHHHHHHHHHHHH
Q psy1054         385 L--GRAEADRMRLKAQVFK-QYGDAAVMALVLDAL  416 (467)
Q Consensus       385 ~--~~AeA~~~~~~aeA~~-~~~~~a~~~~~ie~l  416 (467)
                      +  ++|+=+...+.|||-+ ..++..+..+.++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (280)
T cd03406         237 KAKADAEYYTAQKEAEANKLKLTPEYLELMKYEAI  271 (280)
T ss_pred             hhccCHHHHHHHHHHhhchhcCCHHHHHHHHHHHH
Confidence            3  3333334456666643 246777777777664

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.7e-12  Score=128.75  Aligned_cols=224  Identities=21%  Similarity=0.205  Sum_probs=160.9

Q ss_pred             cCccceeEeeccccCCCcceEEe-cCceeeeee---eeee-eeccc----------ccccccCCeeEEEeeeeeeeecCc
Q psy1054         184 LNPCCLLVVSGGCCGHTKKLTVV-GGWAWAWWM---VTDV-QRISL----------EDVETLQGVPVTVTGTAQVKIMKA  248 (467)
Q Consensus       184 a~~~~~~vv~g~~~~~~~~~~~~-gG~~f~iP~---i~~v-~~isl----------~~v~Tkdnv~v~v~~~a~~~V~~~  248 (467)
                      ..|.+..++..  +| .+.+++. ||+||++||   ++.+ .++++          +.++|+||..|+++.+++|+|.++
T Consensus        24 v~~~~~~vv~r--~G-~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~  100 (291)
T COG0330          24 VKEGERGVVLR--FG-RYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDP  100 (291)
T ss_pred             EcCCceEEEEE--ec-ceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCH
Confidence            34444444443  22 4668888 999999999   3433 22332          579999999999999999999998


Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhh-------H-----hhhc-CCcccchhhhHHH-hhCCh
Q psy1054         249 EELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEE-------I-----VLLG-GNDHVTNDITRLV-AQLPP  314 (467)
Q Consensus       249 ~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~-------i-----~~~~-~~~~~~~~i~r~~-~~~~~  314 (467)
                      ...+++         .+.....+.+....+||+++|.|++++-       |     -.++ ..+.|+.+|.+++ +.   
T Consensus       101 ~~~~~~---------v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~---  168 (291)
T COG0330         101 QKAVYN---------VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKD---  168 (291)
T ss_pred             HHHHHh---------cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEee---
Confidence            753321         2236778888889999999999999981       1     0022 3355666655543 12   


Q ss_pred             hhhhhccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q psy1054         315 AVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMR  394 (467)
Q Consensus       315 ~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~  394 (467)
                           +++......+|.+++.|++.+.      +.+..|++++++.++.|+|++++.+..++|++++ +..++|++++++
T Consensus       169 -----i~~p~ev~~a~~~~~~Aer~~r------a~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~  236 (291)
T COG0330         169 -----IDPPEEVQAAMEKQMAAERDKR------AEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAK  236 (291)
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHH------HHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHH
Confidence                 3333445559999999998554      3778889988888888888888888888888877 677778888888


Q ss_pred             HHHHHHcccc--HHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054         395 LKAQVFKQYG--DAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND  440 (467)
Q Consensus       395 ~~aeA~~~~~--~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~  440 (467)
                      ..+.++..+.  +.+..+++++.+.+++..      +.+++.+++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~~~~~v~~p~~~  278 (291)
T COG0330         237 IIAAALREAPAAPQALAQRYLEELLEIALA------GNSKVVVVPNSA  278 (291)
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHhhC------CCCeEEEecCCc
Confidence            8888877765  566778888888877765      577788887663

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.43  E-value=1.2e-12  Score=114.97  Aligned_cols=106  Identities=16%  Similarity=0.244  Sum_probs=87.1

Q ss_pred             cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHH
Q psy1054          43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVR  121 (467)
Q Consensus        43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~  121 (467)
                      .+++|+||+++.||.+++|||.++....  ...+| |.+  .....+.+.+.+++|+++|+++++++++ +|+.|++.++
T Consensus        14 ~~v~T~D~~~v~vd~~v~y~V~~~~~~~--~~~~~-~~~--~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~i~~~i~   88 (124)
T cd03400          14 IDVLSKEGLSINADVSVQYRINPNKAAA--VHSKL-GTD--YARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIK   88 (124)
T ss_pred             eEEECCCCCEEEEEEEEEEEEChhhHHH--HHHHh-Ccc--hhheeechhHHHHHHHHhcCCCHHHHhhhhHHHHHHHHH
Confidence            6789999999999999999997544322  22233 432  5567899999999999999999999997 7999999999


Q ss_pred             HHHhhhhhcCCeEEEEEEecCc--HHHHHHHHHH
Q psy1054         122 EVAAPDVGRMGIEILSFTIGEE--AECEKSAMDI  153 (467)
Q Consensus       122 ~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~~a  153 (467)
                      +.+.+.+.+||++|++|+|+++  .+..+++.++
T Consensus        89 ~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~  122 (124)
T cd03400          89 KELIEEFVGDGLILEEVLLRNIKLPDQIADAIEA  122 (124)
T ss_pred             HHHHHHhccCCeEEEEEEEecccCCHHHHHHHHh
Confidence            9999999999999999999994  3445555543

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=99.42  E-value=1.1e-12  Score=123.85  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=76.2

Q ss_pred             ccCccceeEeeccccCCC-cceEEecCceeeeeeeeeeeecccc--------cccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054         183 FLNPCCLLVVSGGCCGHT-KKLTVVGGWAWAWWMVTDVQRISLE--------DVETLQGVPVTVTGTAQVKIMKAEELIQ  253 (467)
Q Consensus       183 ~a~~~~~~vv~g~~~~~~-~~~~~~gG~~f~iP~i~~v~~isl~--------~v~Tkdnv~v~v~~~a~~~V~~~~~~i~  253 (467)
                      ..+|....|+...  |+. ...++.||+||++||++++..+|++        .+.|+||++|+++.+..|++.....  .
T Consensus         4 ~V~~g~~gVv~~~--g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~--~   79 (196)
T cd03401           4 NVDGGHRAVLFNR--GGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL--P   79 (196)
T ss_pred             EECCCcEEEEEEe--cCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH--H
Confidence            3456666777542  222 2258999999999999999987773        5789999999999999999864322  1


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchh
Q psy1054         254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTND  304 (467)
Q Consensus       254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~  304 (467)
                      . .-+.+|.  +.....+...+...+|+++|.+++++   +++.++.+..+
T Consensus        80 ~-~~~~~~~--~~~~~~i~~~v~~~lR~vi~~~~~~e---i~~~R~~i~~~  124 (196)
T cd03401          80 R-IYQNLGE--DYDERVLPSIINEVLKAVVAQFTAEE---LITQREEVSAL  124 (196)
T ss_pred             H-HHHHhCc--chHhhhhcHHHHHHHHHHHccCCHHH---HHhhHHHHHHH
Confidence            1 1222222  22244566677889999999999998   33444444433

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>KOG2621|consensus

Probab=99.30  E-value=6.6e-12  Score=121.99  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=76.6

Q ss_pred             ecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHH
Q psy1054         206 VGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLE  276 (467)
Q Consensus       206 ~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~  276 (467)
                      .||+.|++|+||..++++|         +++.|||.++|+|+++++|+|.|+..++         .+.++....+.-+..
T Consensus        79 GPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv---------~~V~Da~~sTr~lAq  149 (288)
T KOG2621|consen   79 GPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAV---------NNVGDADNATRLLAQ  149 (288)
T ss_pred             CCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHH---------HhccCHHHHHHHHHH
Confidence            6999999999999999888         4899999999999999999999987644         223344445555566


Q ss_pred             HHHHHhhccccchh----h--H------hhhcCCcccchhhhHHH
Q psy1054         277 GHLRAILAPLAKTE----E--I------VLLGGNDHVTNDITRLV  309 (467)
Q Consensus       277 ~~lR~iiG~m~l~e----~--i------~~~~~~~~~~~~i~r~~  309 (467)
                      ++||.++|+-+|.|    +  |      .+.+.++.|+.+|.|||
T Consensus       150 ttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVE  194 (288)
T KOG2621|consen  150 TTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVE  194 (288)
T ss_pred             HHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEE
Confidence            89999999999987    1  2      23457799999999954

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.17  E-value=1.2e-10  Score=112.48  Aligned_cols=94  Identities=16%  Similarity=0.260  Sum_probs=74.2

Q ss_pred             cCccceeEeeccccCCCcceEE-ecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054         184 LNPCCLLVVSGGCCGHTKKLTV-VGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ  253 (467)
Q Consensus       184 a~~~~~~vv~g~~~~~~~~~~~-~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~  253 (467)
                      .+|++..|++.  +| ++.+++ .|||||++||++. .++|+         +++.|+||.+++++++++|+|.|++..++
T Consensus         5 V~~ge~~Vv~r--fG-k~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~   80 (219)
T cd03402           5 VEPNQARVLVL--FG-RYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVF   80 (219)
T ss_pred             ECCCeeEEEEE--cC-cCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHH
Confidence            46778888874  44 344555 8999999999975 55666         36999999999999999999999887443


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      . .        +++...+....++.||+++|++++++
T Consensus        81 ~-v--------~~~~~~l~~~~~salR~vig~~~~d~  108 (219)
T cd03402          81 N-V--------DDYEEFVHIQSESALRHVASQYPYDD  108 (219)
T ss_pred             H-c--------CCHHHHHHHHHHHHHHHHHccCcHHH
Confidence            2 2        33456778888899999999999998

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.14  E-value=1.2e-09  Score=93.37  Aligned_cols=94  Identities=26%  Similarity=0.492  Sum_probs=82.7

Q ss_pred             cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054          43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE  122 (467)
Q Consensus        43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~  122 (467)
                      ..+.|+|++++.+++++.|+|.++..++    ..+.+.+  . ...+...+.+.+|+++++++++++.++|..|.+.+++
T Consensus        14 ~~~~t~d~~~i~~~~~~~~~v~~~~~~~----~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~   86 (121)
T cd02106          14 QEVLTKDNVPVRVDAVVQYRVVDPVKAL----YNVRDPE--D-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVRE   86 (121)
T ss_pred             ceEEecCCCEEEEEEEEEEEEeCHHHHH----HhcCCcc--H-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHH
Confidence            6789999999999999999999877333    2333322  2 6889999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCeEEEEEEecCc
Q psy1054         123 VAAPDVGRMGIEILSFTIGEE  143 (467)
Q Consensus       123 ~~~~~l~~~GleI~~v~Ik~~  143 (467)
                      .+..++.+||++|.++.|.++
T Consensus        87 ~l~~~~~~~Gi~i~~v~i~~i  107 (121)
T cd02106          87 ALQEDLDKYGIEVVDVRIKDI  107 (121)
T ss_pred             HHHHHHHhcCCEEEEEEEEec
Confidence            999999999999999999984

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>KOG3090|consensus

Probab=98.98  E-value=1.5e-08  Score=95.76  Aligned_cols=169  Identities=12%  Similarity=0.135  Sum_probs=120.0

Q ss_pred             EEEEEcccCCCCcceEEeCCEEEEecccceeEEEec--------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhh
Q psy1054           7 LLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFL   78 (467)
Q Consensus         7 alVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl--------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~fl   78 (467)
                      |.+.+ ++|| -..++...|+||.+|||++-..+|+        ...=|+|-.-|++.--+--|.+.  ..+- ..++.|
T Consensus        47 AI~fn-Ri~G-ik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~--~~Lp-~iyrtL  121 (290)
T KOG3090|consen   47 AIVFN-RIGG-IKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA--DQLP-EIYRTL  121 (290)
T ss_pred             EEEEe-cccc-chhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEeeeEEecCCCh--hhhH-HHHHHh
Confidence            44444 6664 4456666799999999999888887        22235888888877555544432  2121 234457


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHHHHHHH-
Q psy1054          79 GKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSAMDIKY-  155 (467)
Q Consensus        79 g~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~~a~~-  155 (467)
                      |.+.  -+..+-.++...|.++++++...++++.|+..+..|++.+.+...++.|-+++|.|+..  +...-.+.+++. 
T Consensus       122 G~~y--~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQv  199 (290)
T KOG3090|consen  122 GQNY--DERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQV  199 (290)
T ss_pred             ccCc--chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHH
Confidence            7643  34456666778899999999999999999999999999999999999999999999992  221222222222 


Q ss_pred             ---hh-----hHHHHHHHhHHHHHHhhhHHHHhhh
Q psy1054         156 ---AT-----DSKIENNARLFKLQKASFDAEISTA  182 (467)
Q Consensus       156 ---~a-----~~~iAea~r~~~i~~Aea~~e~~~a  182 (467)
                         ++     -.+.|+.+++..+.+|+.+++.+.-
T Consensus       200 A~QeAqRA~F~VekA~qek~~~ivrAqGEaksAql  234 (290)
T KOG3090|consen  200 AAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQL  234 (290)
T ss_pred             HHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHH
Confidence               11     2467889999999999888877543

>smart00244 PHB prohibitin homologues

Probab=98.80  E-value=1.4e-08  Score=91.79  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=75.8

Q ss_pred             ccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054         183 FLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ  253 (467)
Q Consensus       183 ~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~  253 (467)
                      .++|+++.|+.+  .| +..+++.||+||++||++++..+++         .++.|+|++++++++++.|+|.++..   
T Consensus         5 ~V~~g~~~v~~~--~G-~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~---   78 (160)
T smart00244        5 VVGEGEAGVVER--LG-RVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLK---   78 (160)
T ss_pred             EEcccEEEEEEe--cC-ccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHH---
Confidence            456788888886  34 2234899999999999999988777         26899999999999999999988765   


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                       ...+..+..  .  ..+...+.+++|+++|.+++++
T Consensus        79 -~~~~~~~~~--~--~~l~~~i~~~ir~~i~~~~~~~  110 (160)
T smart00244       79 -AVYRVLDAD--Y--AVIEQLAQTTLRSVIGKMTLDE  110 (160)
T ss_pred             -HhhhcCCHH--H--HHHHHHHHHHHHHHHccccHHH
Confidence             233333221  1  4677778889999999999998

prohibitin homologues

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=98.79  E-value=1.2e-08  Score=93.92  Aligned_cols=99  Identities=21%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             cCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc--------c---cccccCCeeEEEeeeeeeeecCcHHHH
Q psy1054         184 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------E---DVETLQGVPVTVTGTAQVKIMKAEELI  252 (467)
Q Consensus       184 a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl--------~---~v~Tkdnv~v~v~~~a~~~V~~~~~~i  252 (467)
                      ++|+++.|+..  .| +...++.||+||++||++++..+++        .   .+.|+||.++++++.+.|+|.++...+
T Consensus         3 V~~g~~~V~~~--~G-~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~   79 (179)
T PF01145_consen    3 VPPGEVGVVVR--FG-KVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFV   79 (179)
T ss_dssp             --------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCC
T ss_pred             eCCCEEEEEEE--CC-eEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHH
Confidence            46777777755  33 2334899999999999999996665        3   789999999999999999997655422


Q ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         253 QSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       253 ~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                          .++ +...+.....+...+.+++|++++.|++++
T Consensus        80 ----~~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~  112 (179)
T PF01145_consen   80 ----QNY-EGGEEDPENLLRQIVESALREVISSYSLEE  112 (179)
T ss_dssp             ----CCC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHH
T ss_pred             ----Hhh-hcchhhhhhhhhhhhhhhhheEeeeeehHH
Confidence                222 134567888899999999999999999998

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>KOG3083|consensus

Probab=98.74  E-value=3.4e-08  Score=93.36  Aligned_cols=176  Identities=11%  Similarity=0.079  Sum_probs=123.8

Q ss_pred             CCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec------cccc--cCCCeEEEEEEEEEEEEcC-cHHHHHHH
Q psy1054           3 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL------EDVE--TLQGVPVTVTGTAQVKIMK-AEELIQSA   73 (467)
Q Consensus         3 ~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl------~~v~--T~D~v~v~Vdav~~~rV~d-~~~~i~~a   73 (467)
                      +-.+-.|+..+|.| ....++..|.||.|||+++-..||.      ..++  |+|-..|++.-.+.||-.. -.-.++..
T Consensus        31 dgg~ravifdrf~g-v~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sqLP~If~~  109 (271)
T KOG3083|consen   31 DGGHRAVIFDRFRG-VQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQLPCIFTS  109 (271)
T ss_pred             CCCceeEEeecccc-hhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEecccccccchHHHh
Confidence            34455566656663 4566777899999999999888887      2233  4777777777766666532 22333321


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecC------cHHHH
Q psy1054          74 SEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------EAECE  147 (467)
Q Consensus        74 a~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~------~a~~~  147 (467)
                          +|.  ++-+..+-.+-..-|++++.+++..|+++.|+-++..+.+.+.+....+|+.++++.|+-      .+++.
T Consensus       110 ----~G~--dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~Av  183 (271)
T KOG3083|consen  110 ----IGE--DYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAV  183 (271)
T ss_pred             ----hcc--cccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHH
Confidence                343  223344444445669999999999999999999999999999999999999999999977      34443


Q ss_pred             HHHHHHHHhhh-----HHHHHHHhHHHHHHhhhHHHHhhhccC
Q psy1054         148 KSAMDIKYATD-----SKIENNARLFKLQKASFDAEISTAFLN  185 (467)
Q Consensus       148 ~~a~~a~~~a~-----~~iAea~r~~~i~~Aea~~e~~~a~a~  185 (467)
                      ....-++.+++     .+.|+.+|.+.+..||.+.+.+.-.+.
T Consensus       184 E~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~  226 (271)
T KOG3083|consen  184 EAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIAN  226 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHH
Confidence            33333333333     466899999999999998887655444

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=98.57  E-value=1.6e-07  Score=82.83  Aligned_cols=80  Identities=41%  Similarity=0.593  Sum_probs=67.3

Q ss_pred             ccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccc
Q psy1054         223 SLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVT  302 (467)
Q Consensus       223 sl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~  302 (467)
                      .-++++|+||++++++++++|+|.++...+.++.++|.+...+.+...+...+.++||+++|+|++++   +++.++.++
T Consensus        12 ~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e---l~~~R~~i~   88 (128)
T cd03399          12 GSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE---IYEDRDKFA   88 (128)
T ss_pred             cccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHhHHHHH
Confidence            34689999999999999999999999987888889998655677999999999999999999999999   444444444


Q ss_pred             hhh
Q psy1054         303 NDI  305 (467)
Q Consensus       303 ~~i  305 (467)
                      .+|
T Consensus        89 ~~i   91 (128)
T cd03399          89 EQV   91 (128)
T ss_pred             HHH
Confidence            443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>KOG2962|consensus

Probab=98.09  E-value=0.00033  Score=67.04  Aligned_cols=132  Identities=15%  Similarity=0.209  Sum_probs=91.7

Q ss_pred             eEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy1054          21 LTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILH   91 (467)
Q Consensus        21 rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~   91 (467)
                      .+-.||.|+.+||+.++..+-.         ..+=|+.||-+..|-.-.+.-- .+.+++.-..+| +  .+.-...+-+
T Consensus        43 ~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L-~~d~Vydiv~NY-t--vdYD~~lIfn  118 (322)
T KOG2962|consen   43 SITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFL-RPDAVYDIVKNY-T--VDYDKTLIFN  118 (322)
T ss_pred             ccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhh-chhHHHHHHHHc-c--cCCcchhhhh
Confidence            3445899999999988877643         4455899988877732111111 234455555554 2  2334556666


Q ss_pred             HHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecC--cHHH---HHHHHHHHHh
Q psy1054          92 TLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGE--EAEC---EKSAMDIKYA  156 (467)
Q Consensus        92 il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~--~a~~---~~~a~~a~~~  156 (467)
                      -+.-.+...++.+||.+++- --+.+.+.+++.+..|+..|  |++|-.|+++.  +.++   .-+.|+++..
T Consensus       119 KiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E~ME~EkT  191 (322)
T KOG2962|consen  119 KIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFELMEAEKT  191 (322)
T ss_pred             HHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHHHHHHHhh
Confidence            77778889999999999985 47889999999999999887  89999999998  3332   3455666543

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=98.05  E-value=0.00021  Score=68.83  Aligned_cols=95  Identities=20%  Similarity=0.314  Sum_probs=76.9

Q ss_pred             CeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHhhHHHHHHHHHHHHhhh
Q psy1054          50 GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGT--LTVEEIVKDRDQFASLVREVAAPD  127 (467)
Q Consensus        50 ~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~--~tleei~~dR~~~~~~v~~~~~~~  127 (467)
                      .+++..-+...|||.||..++...+-.--..+.+++...++..+...+-+.++.  +++.+|-.+-.+|++.+++.+.+.
T Consensus        98 ~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~  177 (211)
T PF13421_consen   98 PVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPE  177 (211)
T ss_pred             cEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888999999998776433221111245678888888888888888875  789999999999999999999999


Q ss_pred             hhcCCeEEEEEEecCcH
Q psy1054         128 VGRMGIEILSFTIGEEA  144 (467)
Q Consensus       128 l~~~GleI~~v~Ik~~a  144 (467)
                      +..+||+|+++.|.+++
T Consensus       178 ~~~~Gi~l~~f~I~~i~  194 (211)
T PF13421_consen  178 FERYGIELVDFGIESIS  194 (211)
T ss_pred             HHhcCcEEEEEEEEeec
Confidence            99999999999999964

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=97.72  E-value=0.00011  Score=69.80  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             cccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         226 DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       226 ~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      ...|+|+++|.+++++.|+|.|+...+.+.......+..+.++..+...+.+++|+++|.+++++
T Consensus        92 ~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~  156 (207)
T cd03408          92 RDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAV  156 (207)
T ss_pred             eCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence            45788999999999999999998875544432221244467888999999999999999999987

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PTZ00491 major vault protein; Provisional

Probab=97.43  E-value=0.27  Score=55.73  Aligned_cols=172  Identities=12%  Similarity=0.056  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEcccCCCCcceEEe-CCEEEEecccceeEEEec--------------------------cccccCCCeEEE
Q psy1054           2 LNPCCLLVVSGGCCGHTKKLTVV-GGWAWAWWMVTDVQRISL--------------------------EDVETLQGVPVT   54 (467)
Q Consensus         2 ~~p~ealVvsG~~g~~~~~rvv~-~Gl~f~iP~iq~v~~idl--------------------------~~v~T~D~v~v~   54 (467)
                      +|.|.+.=|+- .. .+..||+. |-+.+.=|- +....++|                          ..+.|+|...+.
T Consensus       467 vphn~avqvyd-yk-~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~  543 (850)
T PTZ00491        467 VPHNAAVQLYD-YK-TKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA  543 (850)
T ss_pred             cCCCcEEEEEE-cc-cCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence            56666666653 22 34466666 477777774 45555554                          456799999999


Q ss_pred             EEEEEEEEEc---CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHH-HHHHHHHHHHhh----
Q psy1054          55 VTGTAQVKIM---KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRD-QFASLVREVAAP----  126 (467)
Q Consensus        55 Vdav~~~rV~---d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~-~~~~~v~~~~~~----  126 (467)
                      +.-..+|...   .++.   .+..-|...  +-+ ..+-..+.+.+|..+++.++++.+.+=. -+-+.|....++    
T Consensus       544 l~LsYnW~F~v~~~d~~---~~~k~Fsv~--DFv-Gd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~  617 (850)
T PTZ00491        544 LQLSYNWYFDVTDGNPE---DAQKCFSVP--DFV-GDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEV  617 (850)
T ss_pred             EEEEEEEEEecCCCChh---hHhheeccC--chH-HHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCcc
Confidence            9999999886   1222   122223111  112 2233445678999999999999987433 233344432222    


Q ss_pred             ----hhhcCCeEEEEEEecCc-------HHHHHHHH--HHHHhhhHHHHHHHhHHHHHHhhhHHHHhhh
Q psy1054         127 ----DVGRMGIEILSFTIGEE-------AECEKSAM--DIKYATDSKIENNARLFKLQKASFDAEISTA  182 (467)
Q Consensus       127 ----~l~~~GleI~~v~Ik~~-------a~~~~~a~--~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a  182 (467)
                          .+...|+-|.+|.|++.       .++.+.+-  ..+.....+.|.|..+++....+++...+..
T Consensus       618 r~~l~F~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerq  686 (850)
T PTZ00491        618 RDSLRFPANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQ  686 (850)
T ss_pred             ccceEEccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHH
Confidence                23566899999999983       12222221  2233344455666666666655555444333

>KOG3083|consensus

Probab=97.07  E-value=0.001  Score=63.51  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCCc
Q psy1054         392 RMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDH  441 (467)
Q Consensus       392 ~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~~  441 (467)
                      +-++++.++.+-++..+....+|+-.+++..    |++-.+++.+++|+.
T Consensus       220 aA~li~~sla~aG~gLielrrlEAa~dia~~----Ls~s~nv~YLp~g~s  265 (271)
T KOG3083|consen  220 AAELIANSLATAGDGLIELRRLEAAEDIAYQ----LSRSRNVTYLPAGQS  265 (271)
T ss_pred             HHHHHHHHHhhcCCceeeehhhhhHHHHHHH----HhcCCCceeccCCcc
Confidence            3446777777778888888888887766665    666678898887753

>KOG3090|consensus

Probab=96.85  E-value=0.014  Score=55.92  Aligned_cols=46  Identities=24%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054         390 ADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND  440 (467)
Q Consensus       390 A~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~  440 (467)
                      |++-+++.+|+++ +++.+..+-|++-.+||..+|..   .+| +++++++
T Consensus       229 aksAqliGeAi~n-n~~fi~Lrki~aAr~IA~tia~S---~Nk-vyL~~~~  274 (290)
T KOG3090|consen  229 AKSAQLIGEAIKN-NPAFITLRKIEAAREIAQTIASS---ANK-VYLSSDD  274 (290)
T ss_pred             hHHHHHHHHHHhC-CccceeehhHHHHHHHHHHHhcC---CCe-EEecccc
Confidence            3344568888865 67778888899988888887653   333 4555554

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=95.95  E-value=0.053  Score=53.78  Aligned_cols=112  Identities=14%  Similarity=0.240  Sum_probs=84.1

Q ss_pred             EEecccceeEEEeccccc-----c-----------CCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcC----CHHHHHHH
Q psy1054          29 WAWWMVTDVQRISLEDVE-----T-----------LQGVPVTVTGTAQVKIMKAEELIQSASEQFLGK----SKEEIQKT   88 (467)
Q Consensus        29 f~iP~iq~v~~idl~~v~-----T-----------~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~----~~~~i~~~   88 (467)
                      |.-|+=+.|.++++++..     |           ...+++...++..|||.||..++ ..   ..|.    ..+++++.
T Consensus        88 f~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kvtDpi~fi-~~---I~g~~dvy~v~di~~q  163 (345)
T COG4260          88 FESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKVTDPILFI-QQ---IPGNRDVYTVDDINQQ  163 (345)
T ss_pred             CCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEecCHHHHH-Hh---ccCCCceEEHHHHHHH
Confidence            445666677777761111     1           23467888899999999987744 22   2221    46789999


Q ss_pred             HHHHHHHHHHHHhhhcc--HHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054          89 ILHTLEGHLRAILGTLT--VEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus        89 i~~il~g~lR~iig~~t--leei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                      +...+.+.|-..|+++-  +-.+-++--.++..+.+.+++++..+|+.|++|+|-.++
T Consensus       164 ~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSis  221 (345)
T COG4260         164 YLSEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASIS  221 (345)
T ss_pred             HHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEec
Confidence            99999999999998774  333445778999999999999999999999999999965

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=95.77  E-value=0.012  Score=51.30  Aligned_cols=61  Identities=15%  Similarity=0.266  Sum_probs=45.5

Q ss_pred             ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      .++.|+||.+++++.++.|+|.++..  .....++ |.  +..+..+...+.+++|+++|++++++
T Consensus        14 ~~v~T~D~~~v~vd~~v~y~V~~~~~--~~~~~~~-~~--~~~~~~i~~~~~~~lR~~~~~~~~~e   74 (124)
T cd03400          14 IDVLSKEGLSINADVSVQYRINPNKA--AAVHSKL-GT--DYARKIVRPTFRSLVREVTGRYTAEQ   74 (124)
T ss_pred             eEEECCCCCEEEEEEEEEEEEChhhH--HHHHHHh-Cc--chhheeechhHHHHHHHHhcCCCHHH
Confidence            37899999999999999999975442  1112222 22  23455677888999999999999998

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2962|consensus

Probab=95.61  E-value=1.3  Score=43.04  Aligned_cols=36  Identities=17%  Similarity=0.191  Sum_probs=27.3

Q ss_pred             EEecCceeeeeeeeeeee--cccc-------cccccCCeeEEEee
Q psy1054         204 TVVGGWAWAWWMVTDVQR--ISLE-------DVETLQGVPVTVTG  239 (467)
Q Consensus       204 ~~~gG~~f~iP~i~~v~~--isl~-------~v~Tkdnv~v~v~~  239 (467)
                      +-.||+|+.+|||..+..  ++||       .|=|..||-+..+-
T Consensus        44 ~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdr   88 (322)
T KOG2962|consen   44 ITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDR   88 (322)
T ss_pred             cCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEeh
Confidence            345999999999998885  4443       57888898876553

>PTZ00491 major vault protein; Provisional

Probab=95.36  E-value=0.61  Score=52.99  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=36.8

Q ss_pred             cccccCCeeEEEeeeeeeeec--C-cHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         226 DVETLQGVPVTVTGTAQVKIM--K-AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       226 ~v~Tkdnv~v~v~~~a~~~V~--~-~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      .|.|+|+..+.+...-+|+-.  + .+.    ++...+ ... +.-..+-..+.+..|+.+..++.|+
T Consensus       533 ~vET~DhArL~l~LsYnW~F~v~~~d~~----~~~k~F-sv~-DFvGd~Ck~iaSrIR~aVA~~~Fd~  594 (850)
T PTZ00491        533 HVETSDHARLALQLSYNWYFDVTDGNPE----DAQKCF-SVP-DFVGDACKTIASRVRAAVASEPFDE  594 (850)
T ss_pred             EEEEcccceEEEEEEEEEEEecCCCChh----hHhhee-ccC-chHHHHHHHHHHHHHHHHhcCCHHH
Confidence            589999999999998888765  1 121    222322 111 1222233455667788888888886

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=91.01  E-value=0.66  Score=38.90  Aligned_cols=59  Identities=17%  Similarity=0.320  Sum_probs=45.8

Q ss_pred             ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      ..+.|+||+++.+++++.|+|.++...+    -++.+...   ...+...+.+.+|++++.+++++
T Consensus        14 ~~~~t~d~~~i~~~~~~~~~v~~~~~~~----~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~   72 (121)
T cd02106          14 QEVLTKDNVPVRVDAVVQYRVVDPVKAL----YNVRDPED---EEALRQLAQSALRSVIGKMTLDE   72 (121)
T ss_pred             ceEEecCCCEEEEEEEEEEEEeCHHHHH----HhcCCccH---HHHHHHHHHHHHHHHHccccHHH
Confidence            4689999999999999999999876312    22222221   56777888899999999999987

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=89.88  E-value=6.8  Score=37.32  Aligned_cols=43  Identities=21%  Similarity=0.118  Sum_probs=24.8

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy1054         340 LPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATAS  382 (467)
Q Consensus       340 k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai  382 (467)
                      .+|+.+..+.+..|+.+....+.+|+.+++.+...|+.+|+..
T Consensus        18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~   60 (198)
T PRK01558         18 EEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDY   60 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555556666666666666666666655555555533

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=89.87  E-value=3.3  Score=39.50  Aligned_cols=43  Identities=28%  Similarity=0.129  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy1054         350 ETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADR  392 (467)
Q Consensus       350 ~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~  392 (467)
                      ...|+.+....+.+|+.+|+.|...|+++|+.|...++.+|+.
T Consensus        17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~   59 (198)
T PRK01558         17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAND   59 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555666666666666666666666665555555543

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=83.79  E-value=13  Score=34.13  Aligned_cols=55  Identities=16%  Similarity=-0.023  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHccc
Q psy1054         349 LETLAEAKKIQSIELAKAEAWKIKSQ--GLADATASEALGRAEADRMRLKAQVFKQY  403 (467)
Q Consensus       349 ~~~~Aea~k~~~i~~Aeaeae~i~~~--a~AeA~ai~~~~~AeA~~~~~~aeA~~~~  403 (467)
                      ....|+.+.+..+.+|+.+++.++..  .+|+.++-+.+..|+.+--..+..|++..
T Consensus        64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~el  120 (154)
T PRK06568         64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKEL  120 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555544433  23333444455555555555566666553

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=83.61  E-value=15  Score=35.37  Aligned_cols=44  Identities=27%  Similarity=0.166  Sum_probs=23.3

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy1054         341 PAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEA  384 (467)
Q Consensus       341 ~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~  384 (467)
                      +|+.++...+..|..++...+.+|+.+++.+...++.+++..+.
T Consensus        24 eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~   67 (207)
T PRK01005         24 PAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLK   67 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555556666665555555555544433

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=83.13  E-value=22  Score=33.40  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054         411 LVLDALPKIAAEVAAPLAKTEEIVLLGGND  440 (467)
Q Consensus       411 ~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~  440 (467)
                      .|-+-|..+......+|.. ++++|+.+..
T Consensus       101 ~Y~~~l~~li~~a~~~l~~-~~i~i~~~~~  129 (198)
T PRK03963        101 EYFETLKALTKEAVEELGE-DKVVVRSNER  129 (198)
T ss_pred             hHHHHHHHHHHHHHHHhCC-CcEEEEEccc
Confidence            4555566666666666664 5588876554

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=82.67  E-value=9.9  Score=32.77  Aligned_cols=24  Identities=21%  Similarity=0.105  Sum_probs=13.7

Q ss_pred             hcccchHHHHHHHHHHHHHHHHHH
Q psy1054         373 SQGLADATASEALGRAEADRMRLK  396 (467)
Q Consensus       373 ~~a~AeA~ai~~~~~AeA~~~~~~  396 (467)
                      -+++.+|+.|...|++++..|...
T Consensus        65 ee~e~ea~eI~~~ae~~~~~~~~k   88 (108)
T COG2811          65 EEAEEEAEEILAEAEKEASAILSK   88 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666665443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=82.14  E-value=14  Score=35.50  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=31.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHH-HHHHHHcc
Q psy1054         342 AEAECYRLETLAEAKKIQSIELAKAEAWKIKSQG--LADATASEALGRAEADRMR-LKAQVFKQ  402 (467)
Q Consensus       342 Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a--~AeA~ai~~~~~AeA~~~~-~~aeA~~~  402 (467)
                      |..++...+.+|+.+....+.+|+.+++..+.++  .++=.+.++...+..+-+. ...++++.
T Consensus        36 Ak~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~vf~~a~~~   99 (207)
T PRK01005         36 AKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFRESLGE   99 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344556666666666666665555444333  3333455566666666555 34555543

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=80.84  E-value=7.4  Score=38.89  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             ccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054          44 DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE  122 (467)
Q Consensus        44 ~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~-~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~  122 (467)
                      ....+||+.+.+.+-+++|-+=         +++.|+ .+   +..+..+-+|-+-++=++-+-.+++.+-+.+...|.+
T Consensus       133 ~aVAkdGIql~~kArVTVRaNi---------~rLVGGAgE---eTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~  200 (316)
T PF12127_consen  133 AAVAKDGIQLKVKARVTVRANI---------DRLVGGAGE---ETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLE  200 (316)
T ss_pred             hhhhcCCeEEEEEEEEEEEecH---------HHhccCCCc---HHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHh
Confidence            4457999999999999988752         233343 33   3445555566666666677889999999999999886


Q ss_pred             HHhhhhhcCCeEEEEEEecCc
Q psy1054         123 VAAPDVGRMGIEILSFTIGEE  143 (467)
Q Consensus       123 ~~~~~l~~~GleI~~v~Ik~~  143 (467)
                      .  .--..--++|.|+.|-|+
T Consensus       201 k--gLDagTAFeIlSIDIaDi  219 (316)
T PF12127_consen  201 K--GLDAGTAFEILSIDIADI  219 (316)
T ss_pred             h--CCCcCceeEEEEeeeecc
Confidence            4  111233488999999884

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	467
1win_A	143	Solution Structure Of The Band 7 Domain Of The Mous		2e-36
1win_A	143	Solution Structure Of The Band 7 Domain Of The Mous		3e-15

>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse Flotillin 2 Protein Length = 143

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 89/112 (79%), Gaps = 9/112 (8%)
Query: 38  QRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKT 88
           QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+  
Sbjct: 8   QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNV 67
Query: 89  ILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
           +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct: 68  VLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse Flotillin 2 Protein Length = 143

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 9/76 (11%)
Query: 220 QRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKT 270
           QRISLE         DVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+  
Sbjct: 8   QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNV 67
Query: 271 ILHTLEGHLRAILAPL 286
           +L TLEGHLR+IL  L
Sbjct: 68  VLQTLEGHLRSILGTL 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	467
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	5e-28
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score =  107 bits (269), Expect = 5e-28
 Identities = 77/115 (66%), Positives = 90/115 (78%), Gaps = 9/115 (7%)

Query: 35  TDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEI 85
           +  QRISL         EDVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++I
Sbjct: 5   SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDI 64

Query: 86  QKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
           +  +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct: 65  KNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 68.7 bits (168), Expect = 3e-14
 Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 9/77 (11%)

Query: 217 TDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEI 267
           +  QRISL         EDVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++I
Sbjct: 5   SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDI 64

Query: 268 QKTILHTLEGHLRAILA 284
           +  +L TLEGHLR+IL 
Sbjct: 65  KNVVLQTLEGHLRSILG 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 66/401 (16%), Positives = 130/401 (32%), Gaps = 120/401 (29%)

Query: 93  LEGHLRAILGTLTVEEIVKDRDQFASLVR-------------EVAAPDVGRMGIEILSFT 139
           ++   ++IL    ++ I+  +D  +  +R             +    +V R+  + L   
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 140 IGEEAECEKSAMDIKYATD-SKIENNARLF------------KLQKASFDAEISTAFLNP 186
           I  E   + S M   Y     ++ N+ ++F            KL++A  +       L P
Sbjct: 98  IKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149

Query: 187 CCLLVVSG--GCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVP-----VTV-- 237
              +++ G  G  G  K            W+  DV        +    +      + +  
Sbjct: 150 AKNVLIDGVLG-SG--K-----------TWVALDV----CLSYKVQCKMDFKIFWLNLKN 191

Query: 238 TGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTI---LHTLEGHLRAILA-PLAKTEEIV 293
             + +  +   ++L+      +   S+ +    I   +H+++  LR +L     +   +V
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 294 LLGGNDHVTN-------DI-------TRLVAQLPPAVQALTGVDISKIQRRE-------K 332
           L     +V N       ++       TR   Q+   + A T   IS             K
Sbjct: 250 L----LNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 333 ELTATV------KLPAEAEC----YRLETLAEAKKIQSIELAKAEAWK-IKSQGLADATA 381
            L           LP E        RL  +AE+ +     LA  + WK +    L     
Sbjct: 305 SLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTIIE 360

Query: 382 S--EALGRAEADRMRLKAQVFKQYG----DAAVMALVLDAL 416
           S    L   E    R   ++F +       A +  ++L  +
Sbjct: 361 SSLNVL---EPAEYR---KMFDRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	467
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.88
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.82
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.76
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.6
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.31
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.3
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	98.96
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	97.87
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	97.81
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	95.79

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.88  E-value=2.5e-23  Score=186.50  Aligned_cols=124  Identities=63%  Similarity=0.850  Sum_probs=110.1

Q ss_pred             ccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhh
Q psy1054          33 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGT  103 (467)
Q Consensus        33 ~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~  103 (467)
                      |+|++.++|+         ++++|+||+++.||++++|||.|+++.++.++++|++.+...+..++.++++++||+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5788888776         8899999999999999999999656666678899999888899999999999999999999


Q ss_pred             ccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHHHHHHHh
Q psy1054         104 LTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSAMDIKYA  156 (467)
Q Consensus       104 ~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~~a~~~  156 (467)
                      |||+|++++|+.|+..|++.++.++.+|||+|.+|+|+++  ....+++|..+..
T Consensus        83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~  137 (143)
T 1win_A           83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQT  137 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999995  3456667654433

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.82  E-value=2.3e-20  Score=165.22  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=87.2

Q ss_pred             EEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy1054          29 WAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRA   99 (467)
Q Consensus        29 f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~   99 (467)
                      ++.||+|++.++|+         ++++|+|+++|.||++++|||.||.++++.         .+.....+..+++++||+
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~---------v~~~~~~l~~~~~~~lR~   73 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVAN---------ITNADSATRLLAQTTLRN   73 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHS---------SSCHHHHHHHHHHHHHHH
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhh---------hhhHHHHHHHHHHHHHHH
Confidence            78999999999987         789999999999999999999998876532         123567788889999999


Q ss_pred             HhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHHH
Q psy1054         100 ILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSAM  151 (467)
Q Consensus       100 iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~  151 (467)
                      ++|++++++++++|++++..+++.+++.+.+||++|.+|+|++.  ....+++|
T Consensus        74 vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am  127 (133)
T 4fvg_A           74 ALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAM  127 (133)
T ss_dssp             HHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----
T ss_pred             HhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999993  23344455

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.76  E-value=4.2e-18  Score=158.93  Aligned_cols=102  Identities=16%  Similarity=0.327  Sum_probs=87.9

Q ss_pred             ccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhh
Q psy1054          33 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGT  103 (467)
Q Consensus        33 ~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~  103 (467)
                      |+|++.++|+         ++++|+|+++|.||++++|||.||..+++ ..     .+   ....+.+++++.||+++|+
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~-~v-----~~---~~~~i~~~~~~~lR~vig~   72 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVT-QV-----KN---YIMATSQISQTTLRSVIGQ   72 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHH-SS-----SC---HHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHH-Hh-----cC---HHHHHHHHHHHHHHHHHcc
Confidence            5666666665         68899999999999999999999876543 11     12   3455778899999999999


Q ss_pred             ccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054         104 LTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE  143 (467)
Q Consensus       104 ~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~  143 (467)
                      |++++++++|+.|+..|++.+++.+.+|||+|++|+|+++
T Consensus        73 ~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i  112 (188)
T 3bk6_A           73 AHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDV  112 (188)
T ss_dssp             SCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEE
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEec
Confidence            9999999999999999999999999999999999999993

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.60  E-value=7.8e-16  Score=131.65  Aligned_cols=99  Identities=21%  Similarity=0.316  Sum_probs=86.8

Q ss_pred             eeEEEec--cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhH
Q psy1054          36 DVQRISL--EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDR  113 (467)
Q Consensus        36 ~v~~idl--~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR  113 (467)
                      +...+++  ++++|+|+++|.|+++++|||.||.++++    +     .......+.++++++||+++|++++++++++|
T Consensus         8 r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~----~-----v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R   78 (113)
T 2rpb_A            8 REHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVY----N-----VSDFLMAIVKLAQTNLRAIIGEMELDETLSGR   78 (113)
T ss_dssp             CCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTT----T-----TTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCH
T ss_pred             eEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHH----h-----cCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCH
Confidence            3444555  78999999999999999999999876432    1     12456779999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054         114 DQFASLVREVAAPDVGRMGIEILSFTIGEE  143 (467)
Q Consensus       114 ~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~  143 (467)
                      +.|+..+++.+++.+.+|||+|.+|+|+++
T Consensus        79 ~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i  108 (113)
T 2rpb_A           79 DIINARLREELDKITDRWGVKITRVEIQRI  108 (113)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHhcCeEEEEEEEEEe
Confidence            999999999999999999999999999985

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.31  E-value=3e-13  Score=120.83  Aligned_cols=118  Identities=39%  Similarity=0.502  Sum_probs=90.2

Q ss_pred             eeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhcc
Q psy1054         215 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAP  285 (467)
Q Consensus       215 ~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~  285 (467)
                      |||++.++|+         ++++|+||++++|+++++|+|.+++..+.+++++|++....+++..+.+++.++||+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6788888877         4899999999999999999998644447788999998888899999999999999999999


Q ss_pred             ccchhh------H-----hhhc-CCcccchhhhHHH-hhCChhhhhhccccHHHHHHHHHHhhhcccc
Q psy1054         286 LAKTEE------I-----VLLG-GNDHVTNDITRLV-AQLPPAVQALTGVDISKIQRREKELTATVKL  340 (467)
Q Consensus       286 m~l~e~------i-----~~~~-~~~~~~~~i~r~~-~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k  340 (467)
                      |++++-      |     -.++ ..+.|+.+|.+++ +.        +......+.+|+++..|++.|
T Consensus        83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~Ikd--------I~~p~~~~~am~~~~~Ae~~~  142 (143)
T 1win_A           83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKD--------VYDKVDYLSSLGKTQTSGPSS  142 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCC--------EECTTCHHHHHCCCCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe--------ecChHHHHHHHHHHHhhcccc
Confidence            999981      1     0122 3356666665543 22        333344566898888888754

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.30  E-value=3.7e-12  Score=118.51  Aligned_cols=67  Identities=13%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             eeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhcc
Q psy1054         215 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAP  285 (467)
Q Consensus       215 ~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~  285 (467)
                      |||++.++|+         ++++|+||++|+++++++|+|.++...+ ..+        .++...+...+.++||+++|.
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~-~~v--------~~~~~~i~~~~~~~lR~vig~   72 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAV-TQV--------KNYIMATSQISQTTLRSVIGQ   72 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHH-HSS--------SCHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHH-HHh--------cCHHHHHHHHHHHHHHHHHcc
Confidence            5677776666         4789999999999999999999977633 222        123345567778999999999


Q ss_pred             ccchh
Q psy1054         286 LAKTE  290 (467)
Q Consensus       286 m~l~e  290 (467)
                      |++++
T Consensus        73 ~~l~e   77 (188)
T 3bk6_A           73 AHLDE   77 (188)
T ss_dssp             SCHHH
T ss_pred             CCHHH
Confidence            99998

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=98.96  E-value=1.8e-10  Score=101.45  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             eeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Q psy1054         211 WAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRA  281 (467)
Q Consensus       211 f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~  281 (467)
                      |+.||||+|.++|+         ++++|+||++|.|+++++|+|.|+..++         ++..+.+..+.....++||+
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~---------~~v~~~~~~l~~~~~~~lR~   73 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAV---------ANITNADSATRLLAQTTLRN   73 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHH---------HSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhH---------hhhhhHHHHHHHHHHHHHHH
Confidence            77899999998888         4799999999999999999999987743         22334566777788899999


Q ss_pred             hhccccchh
Q psy1054         282 ILAPLAKTE  290 (467)
Q Consensus       282 iiG~m~l~e  290 (467)
                      ++|.+++++
T Consensus        74 vig~~~lde   82 (133)
T 4fvg_A           74 ALGTKNLSQ   82 (133)
T ss_dssp             HHHTSCHHH
T ss_pred             HhccccHHH
Confidence            999999998

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=97.87  E-value=7.4e-06  Score=69.25  Aligned_cols=57  Identities=19%  Similarity=0.275  Sum_probs=48.2

Q ss_pred             ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      ++++|+||++|+++++++|+|.++..+        + ....++...+...+.++||+++|.|++++
T Consensus        17 ~~v~T~D~~~v~v~~~v~~rI~dp~~~--------~-~~v~~~~~~l~~~~~~~lR~vig~~~l~e   73 (113)
T 2rpb_A           17 QEVICKDNVVVTVDAVVYYQVIDPVKA--------V-YNVSDFLMAIVKLAQTNLRAIIGEMELDE   73 (113)
T ss_dssp             EEEECTTSCEEEECEEEEEEESCTTTC--------T-TTTTHHHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred             ceeEeCCCCEEEEEEEEEEEECCHHHH--------H-HhcCCHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            689999999999999999999997552        2 22235666788889999999999999998

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=97.81  E-value=0.011  Score=65.15  Aligned_cols=169  Identities=11%  Similarity=0.083  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcccCCCCcceEEeC-CEEEEecccceeEEEec--------------------------cccccCCCeEEE
Q psy1054           2 LNPCCLLVVSGGCCGHTKKLTVVG-GWAWAWWMVTDVQRISL--------------------------EDVETLQGVPVT   54 (467)
Q Consensus         2 ~~p~ealVvsG~~g~~~~~rvv~~-Gl~f~iP~iq~v~~idl--------------------------~~v~T~D~v~v~   54 (467)
                      ||.|.+.-|+. .. .+..|++.| -+.|.=| =+....+||                          ..+.|+|+..+.
T Consensus       462 vphnaaVqvyD-y~-~~~~RvvfGP~lv~L~P-dE~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~  538 (861)
T 2zuo_A          462 VPHNAAVQVYD-YR-AKRARVVFGPELVTLDP-EEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQ  538 (861)
T ss_dssp             CCTTEEEEEEC-SS-SCCEEEECSSCEEECCS-SCEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEE
T ss_pred             cCCCeEEEEEe-cC-CCceEEEECCcEEEECC-CccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEE
Confidence            68888888884 43 345777774 6655555 355554554                          567799999999


Q ss_pred             EEEEEEEEEcC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHH---h-----
Q psy1054          55 VTGTAQVKIMK-AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVA---A-----  125 (467)
Q Consensus        55 Vdav~~~rV~d-~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~---~-----  125 (467)
                      +....+|...- ++..-..+..-|...+  -+.. +-..+.+.+|..+++.|+++.+.+=..+   |+..+   +     
T Consensus       539 L~LsYnW~F~~~d~~~~~~~~k~Fsv~D--FvGd-~Ck~iaSriR~aVA~~~Fd~FHknsa~i---ir~aVFg~~~~~~~  612 (861)
T 2zuo_A          539 LQLAYNWHFELKNRNDPAEAAKLFSVPD--FVGD-ACKAIASRVRGAVASVTFDDFHKNSARI---IRMAVFGFEMSEDT  612 (861)
T ss_dssp             EEEEEEEEECCTTTTCHHHHHGGGSSSS--HHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHH---HHHHSSCCC-----
T ss_pred             EEEEEEEEEeccCCCChhhhhhhccCCc--hHHH-HHHHHHHHHHHHhhcCcHHHHhhhHHHH---HHHhhcCCCccccc
Confidence            99999998842 2211112333342221  1222 2234467899999999999998753333   22221   1     


Q ss_pred             -------------hhhhcCCeEEEEEEecCc-------HHHHHHHH--HHHHhhhHHHHHHHhHHHHHHhhhHHHH
Q psy1054         126 -------------PDVGRMGIEILSFTIGEE-------AECEKSAM--DIKYATDSKIENNARLFKLQKASFDAEI  179 (467)
Q Consensus       126 -------------~~l~~~GleI~~v~Ik~~-------a~~~~~a~--~a~~~a~~~iAea~r~~~i~~Aea~~e~  179 (467)
                                   -.+...|+-|.+|.|++.       .++.+.+-  ..+..-..+.|.|..+++...-+++.+.
T Consensus       613 ~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~LqkSVqlAiEItT~sqEa~Ar~~A~~~eQea~g~L  688 (861)
T 2zuo_A          613 GPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRL  688 (861)
T ss_dssp             --------CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhhhhH
Confidence                         125567899999999982       12222221  2222333445555555555544444443

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=95.79  E-value=0.28  Score=54.17  Aligned_cols=101  Identities=9%  Similarity=0.058  Sum_probs=58.0

Q ss_pred             cCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccc--------------------------cccccCCeeEEE
Q psy1054         184 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE--------------------------DVETLQGVPVTV  237 (467)
Q Consensus       184 a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~--------------------------~v~Tkdnv~v~v  237 (467)
                      ++-|++.-|.--.  .+..|++-|=-.+.++--+....+||.                          .|.|+|+..+.+
T Consensus       462 vphnaaVqvyDy~--~~~~RvvfGP~lv~L~PdE~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~L  539 (861)
T 2zuo_A          462 VPHNAAVQVYDYR--AKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQL  539 (861)
T ss_dssp             CCTTEEEEEECSS--SCCEEEECSSCEEECCSSCEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEEE
T ss_pred             cCCCeEEEEEecC--CCceEEEECCcEEEECCCccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEEE
Confidence            4556555554321  234555554444555555555555551                          699999999999


Q ss_pred             eeeeeeeec--CcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         238 TGTAQVKIM--KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       238 ~~~a~~~V~--~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      ...-+|+..  ++.+ . ..+.+.+ ...+-+ ..+-..+.+..|+.+...+.|+
T Consensus       540 ~LsYnW~F~~~d~~~-~-~~~~k~F-sv~DFv-Gd~Ck~iaSriR~aVA~~~Fd~  590 (861)
T 2zuo_A          540 QLAYNWHFELKNRND-P-AEAAKLF-SVPDFV-GDACKAIASRVRGAVASVTFDD  590 (861)
T ss_dssp             EEEEEEEECCTTTTC-H-HHHHGGG-SSSSHH-HHHHHHHHHHHHHHHTTSCHHH
T ss_pred             EEEEEEEEeccCCCC-h-hhhhhhc-cCCchH-HHHHHHHHHHHHHHhhcCcHHH
Confidence            999999764  3211 1 1234433 222211 1223345567899999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	467
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	3e-14

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (164), Expect = 3e-14
 Identities = 77/113 (68%), Positives = 89/113 (78%), Gaps = 9/113 (7%)

Query: 37  VQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQK 87
            QRISL         EDVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+ 
Sbjct: 7   GQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKN 66

Query: 88  TILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
            +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct: 67  VVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	467
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.87

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2e-19  Score=158.85  Aligned_cols=102  Identities=71%  Similarity=1.012  Sum_probs=98.7

Q ss_pred             cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054          43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE  122 (467)
Q Consensus        43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~  122 (467)
                      ++++|+||+||.|+++++|||.||++++..++++|++.+.+.+...+.++++++||+++|+||+++++++|+.|++.+.+
T Consensus        22 q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~el~~~R~~i~~~v~~  101 (143)
T d1wina_          22 EDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVRE  101 (143)
T ss_dssp             EEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHH
T ss_pred             ceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHhCHHHHHHHHHH
Confidence            78999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCeEEEEEEecCcH
Q psy1054         123 VAAPDVGRMGIEILSFTIGEEA  144 (467)
Q Consensus       123 ~~~~~l~~~GleI~~v~Ik~~a  144 (467)
                      .+.+++.+|||+|.+++|+|+.
T Consensus       102 ~i~~~l~~~Gi~v~~v~I~dI~  123 (143)
T d1wina_         102 VAAPDVGRMGIEILSFTIKDVY  123 (143)
T ss_dssp             HHHHHHTTTTEEEEEEECCCEE
T ss_pred             HHHHHHHHhCeEEEEEEEEecC
Confidence            9999999999999999999953

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=4.2e-10  Score=98.06  Aligned_cols=66  Identities=58%  Similarity=0.855  Sum_probs=63.5

Q ss_pred             ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054         225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE  290 (467)
Q Consensus       225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e  290 (467)
                      ++|+|+||++|+|+++++|+|.++.+++.++.++|+++..++++..+.+.+.++||+++|.|++++
T Consensus        22 q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~e   87 (143)
T d1wina_          22 EDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQ   87 (143)
T ss_dssp             EEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             ceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            489999999999999999999999888999999999999999999999999999999999999998