Psyllid ID: psy10573
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 206 | 2.2.26 [Sep-21-2011] | |||||||
| Q43209 | 230 | Protein-L-isoaspartate O- | N/A | N/A | 0.844 | 0.756 | 0.436 | 7e-31 | |
| Q92047 | 228 | Protein-L-isoaspartate(D- | no | N/A | 0.834 | 0.754 | 0.415 | 2e-30 | |
| P15246 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.946 | 0.859 | 0.391 | 3e-30 | |
| P80895 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.946 | 0.859 | 0.391 | 5e-30 | |
| Q5F3N1 | 228 | Protein-L-isoaspartate(D- | no | N/A | 0.898 | 0.811 | 0.390 | 2e-29 | |
| Q42539 | 230 | Protein-L-isoaspartate O- | no | N/A | 0.825 | 0.739 | 0.429 | 3e-29 | |
| P22062 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.946 | 0.859 | 0.381 | 5e-29 | |
| Q4R5H0 | 227 | Protein-L-isoaspartate(D- | N/A | N/A | 0.946 | 0.859 | 0.386 | 7e-29 | |
| P22061 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.946 | 0.859 | 0.386 | 7e-29 | |
| Q5RA89 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.946 | 0.859 | 0.386 | 7e-29 |
| >sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 102/181 (56%), Gaps = 7/181 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M +DR F PY IGY A IS+PH+HA LELLKD ++PG LD+GSG
Sbjct: 35 METIDRALFVPEGFT-PYTDSPMPIGYNATISAPHMHATCLELLKDYLQPGMHALDVGSG 93
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVAYFWLRHL 119
SGYLTAC A M GPEGR G+EH+ EL +S +N+++ + L+ G + F
Sbjct: 94 SGYLTACFAMMVGPEGRAVGIEHIPELVVASTENVERSAAAALMKDGSLSFHVSDGRLGW 153
Query: 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTI 179
P+ + V + E LL+QL PGGRMV+PVG Q+L +IDK ADG T
Sbjct: 154 PDAAPYDAIHVGAAA---PEIPRPLLEQLKPGGRMVIPVGT--YSQDLQVIDKSADGSTS 208
Query: 180 V 180
V
Sbjct: 209 V 209
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Triticum aestivum (taxid: 4565) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7 |
| >sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 6/178 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR +F +R PY + IGY A IS+PH+HA LELL D + GA+ LD+GSG
Sbjct: 32 MLATDRSHF-SRC--NPYMDSPQSIGYQATISAPHMHAYALELLHDHLYEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG L+ C + M GP G+V G++H+ EL E SI N+ K + L+ GR++ +
Sbjct: 89 SGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDPSLITSGRIKLIVGDGRMGFT 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 178
P+ + V + T + LLDQL PGGR+++PVG Q L DKL DG T
Sbjct: 149 EEAPYDAIHVGAAAPTVPQA---LLDQLKPGGRLILPVGPAGGNQMLEQYDKLEDGST 203
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 7/202 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 AEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVK 204
Query: 181 TTVVRGVRTNPLYRDRFQQKKY 202
+ GV PL Q ++
Sbjct: 205 MKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 7/202 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVK 204
Query: 181 TTVVRGVRTNPLYRDRFQQKKY 202
+ GV PL Q ++
Sbjct: 205 MKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRCHYAKY---NPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC + M GP+G+V G++H+ EL + SI N+ K + LL GRV+ +
Sbjct: 89 SGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG-SVK 204
Query: 181 TTVVRGVRTNPL 192
+ GV PL
Sbjct: 205 MKPLMGVIYVPL 216
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 101/177 (57%), Gaps = 7/177 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDR F T + Y IGY IS+PH+HA L+LL+ +KPG R+LD+GSG
Sbjct: 35 MEAVDRGVFVTDR-SSAYVDSPMSIGYNVTISAPHMHAMCLQLLEKHLKPGMRVLDVGSG 93
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID-KGNSELLDQGRVQFVAYFWLRHL 119
+GYLTAC A M G EGR GVEH+ EL SS+KNI+ S L +G + +
Sbjct: 94 TGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAASPFLKEGSLAVHVGDGRQGW 153
Query: 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + E L+DQL PGGR+V+PVG F Q+L ++DK +DG
Sbjct: 154 AEFAPYDAIHVGAAA---PEIPEALIDQLKPGGRLVIPVGNIF--QDLQVVDKNSDG 205
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 109/202 (53%), Gaps = 7/202 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ + PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---SNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRV+ V
Sbjct: 89 SGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLVVGDGRMGFA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVK 204
Query: 181 TTVVRGVRTNPLYRDRFQQKKY 202
+ GV PL Q ++
Sbjct: 205 MKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 108/202 (53%), Gaps = 7/202 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAE---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVK 204
Query: 181 TTVVRGVRTNPLYRDRFQQKKY 202
+ GV PL Q ++
Sbjct: 205 MKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 108/202 (53%), Gaps = 7/202 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG +I
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SIK 204
Query: 181 TTVVRGVRTNPLYRDRFQQKKY 202
+ GV PL Q ++
Sbjct: 205 MKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 108/202 (53%), Gaps = 7/202 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVK 204
Query: 181 TTVVRGVRTNPLYRDRFQQKKY 202
+ GV PL Q ++
Sbjct: 205 MKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 206 | ||||||
| 320168944 | 321 | L-isoaspartyl protein carboxyl methyltra | 0.868 | 0.557 | 0.430 | 1e-34 | |
| 242014348 | 287 | protein-L-isoaspartate O-methyltransfera | 0.927 | 0.665 | 0.434 | 1e-34 | |
| 225710608 | 250 | Protein-L-isoaspartateD-aspartate O-meth | 0.878 | 0.724 | 0.441 | 3e-33 | |
| 225718542 | 248 | Protein-L-isoaspartateD-aspartate O-meth | 0.878 | 0.729 | 0.436 | 2e-32 | |
| 156550279 | 229 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.830 | 0.746 | 0.446 | 5e-32 | |
| 114052539 | 249 | L-isoaspartyl protein carboxyl methyltra | 0.844 | 0.698 | 0.433 | 9e-32 | |
| 390345040 | 296 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.898 | 0.625 | 0.411 | 4e-31 | |
| 348531162 | 246 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.927 | 0.776 | 0.429 | 5e-31 | |
| 383856863 | 268 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.868 | 0.667 | 0.427 | 5e-31 | |
| 225456838 | 230 | PREDICTED: protein-L-isoaspartate O-meth | 0.946 | 0.847 | 0.433 | 6e-31 |
| >gi|320168944|gb|EFW45843.1| L-isoaspartyl protein carboxyl methyltransferase [Capsaspora owczarzaki ATCC 30864] | Back alignment and taxonomy information |
|---|
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 127/209 (60%), Gaps = 30/209 (14%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDR +F + +PY+ + IG+GA IS+PH+HA +LELLK ++PG R+LD+GSG
Sbjct: 129 MRAVDRGDF---TLTQPYQDSPQPIGHGATISAPHMHAHVLELLKGHLRPGMRVLDVGSG 185
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--------- 111
SGYL AC+A+M GP G+V G+EH+ EL S+ N+ + ++E L+ GR++ V
Sbjct: 186 SGYLCACMAHMVGPAGKVVGIEHIPELVNMSLINLKRHHNEALEAGRIEIVVGDGRLGIS 245
Query: 112 -AYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+ F H+ P + QS L+DQL PGGR+V+PVG+ F GQ+L +
Sbjct: 246 GSQFDAIHVGAAAP----TIPQS----------LVDQLKPGGRLVIPVGQSF-GQSLEQV 290
Query: 171 DKLADGYTIVTTVVRGVRTNPLYRDRFQQ 199
DKL DG +IVT + GV PL DR Q
Sbjct: 291 DKLPDG-SIVTQHLMGVIYVPLT-DREHQ 317
|
Source: Capsaspora owczarzaki ATCC 30864 Species: Capsaspora owczarzaki Genus: Capsaspora Family: Order: Class: Ichthyosporea Phylum: Superkingdom: Eukaryota |
| >gi|242014348|ref|XP_002427853.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis] gi|212512322|gb|EEB15115.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 114/198 (57%), Gaps = 7/198 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR N+ PY + IGYG IS+PH+HA LELLKD + G + LD+GSG
Sbjct: 32 MLQVDRGNYSKAA---PYMDAPQGIGYGVTISAPHMHAHALELLKDHLTEGEKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLT C+A M G EGR G++H+ EL ++S +N+ K ELLD GRV+FV R
Sbjct: 89 SGYLTVCMALMVGQEGRAVGIDHIAELIDTSTENVRKDKPELLDSGRVKFVVGDGRRGYP 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + + L+DQL PGGR+++P+G QNL IDK ADG +
Sbjct: 149 DDGPYNAIHVGAASPNLPQS---LIDQLKPGGRLIVPIGPEGGNQNLEQIDKKADG-SFT 204
Query: 181 TTVVRGVRTNPLYRDRFQ 198
T + GV PL Q
Sbjct: 205 RTPLMGVVYVPLTDKEAQ 222
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225710608|gb|ACO11150.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Caligus rogercresseyi] | Back alignment and taxonomy information |
|---|
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 7/188 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M RVDR ++ V + PY + IGYGA IS+PH+HA LE L + +K G ++LD+GSG
Sbjct: 55 MSRVDRGHY---VPSSPYMDSPQTIGYGATISAPHMHAFALEYLTNHLKEGNKVLDVGSG 111
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC A M GP G+ G++HV +L E NI K ELL GRV+ V +
Sbjct: 112 SGYLTACFALMVGPSGKAVGIDHVDDLVEKGRDNIQKDQPELLSSGRVKLVVGDGRKGYA 171
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + E + L+DQL PGGR+V+P+G Q++ IDKLADG +I
Sbjct: 172 SEGPYNAINVGAAAV---ELHQELVDQLAPGGRLVLPIGPSNGDQHMEQIDKLADG-SIK 227
Query: 181 TTVVRGVR 188
V+ GVR
Sbjct: 228 REVLMGVR 235
|
Source: Caligus rogercresseyi Species: Caligus rogercresseyi Genus: Caligus Family: Caligidae Order: Siphonostomatoida Class: Maxillopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225718542|gb|ACO15117.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Caligus clemensi] | Back alignment and taxonomy information |
|---|
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M +VDR N+ + + PY + IGYGA IS+PH+HA LE L+ +K G R+LD+GSG
Sbjct: 53 MSQVDRGNYIS---SSPYMDSPQSIGYGATISAPHMHAFALEYLEGHLKEGNRVLDVGSG 109
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLT+C A M GP GRV G++HV +L + NI K ELL GRV V R
Sbjct: 110 SGYLTSCFALMVGPSGRVTGIDHVEDLVQMGRNNIQKDQPELLSSGRVSLVLGDGRRGFA 169
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + E + L+DQL PGGR+V+P+G Q++ IDK DG +I
Sbjct: 170 SGGPYHAINVGAAAV---ELHQELVDQLAPGGRLVLPIGPSNGDQHMEKIDKKVDG-SIQ 225
Query: 181 TTVVRGVR 188
V+ GVR
Sbjct: 226 REVLMGVR 233
|
Source: Caligus clemensi Species: Caligus clemensi Genus: Caligus Family: Caligidae Order: Siphonostomatoida Class: Maxillopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156550279|ref|XP_001602931.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 108/179 (60%), Gaps = 8/179 (4%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML VDR + + ++PY+ RQIGY IS+PH+HA L L +++ GA+ LD+GSG
Sbjct: 32 MLAVDRAKYCHK--SDPYQDCPRQIGYNVTISAPHMHAYALTFLTEQLFDGAKALDVGSG 89
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC+A+M GPEG V GV+H+ EL E SIKN+ GN E L++GR+ F+ L
Sbjct: 90 SGYLTACMAHMVGPEGHVVGVDHIPELVELSIKNVQDGNPEFLEKGRITFLEG---DGRL 146
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG--EPF-KGQNLTIIDKLADG 176
HG I + L+DQL PGGR++ PV E F + Q+L +DK DG
Sbjct: 147 GVAAHGPYNAIHVGAAADTLPQELVDQLAPGGRLICPVVAIEGFNRFQHLMQVDKNLDG 205
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|114052539|ref|NP_001040252.1| L-isoaspartyl protein carboxyl methyltransferase [Bombyx mori] gi|87248521|gb|ABD36313.1| L-isoaspartyl protein carboxyl methyltransferase [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML VDRKN+ + PY+ + IG+ A IS+PH+HA LE LK+++ PG + LD+GSG
Sbjct: 54 MLAVDRKNYCP---SSPYQDSPQSIGFSATISAPHMHAHALEKLKNQLVPGEKALDVGSG 110
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC+A M G GRV G+EH+ EL + KNI N LL R++ V
Sbjct: 111 SGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVGDGRLGYP 170
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + T + L+DQL PGGR+++PVG Q+LT +DK DG T V
Sbjct: 171 SEAPYSAIHVGAAAPTLPQA---LIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTV 227
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|390345040|ref|XP_786523.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 111/192 (57%), Gaps = 7/192 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDRK++ + N PY + IGY IS+PH+HA LELLKD + G LD+GSG
Sbjct: 100 MRGVDRKHYSS---NSPYADSPQSIGYAVTISAPHMHAHALELLKDHLSEGKAALDVGSG 156
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLT+C+A M G G+V G++H+ EL + S KNI+K N +LL GR+Q + +
Sbjct: 157 SGYLTSCMAIMVGSSGKVVGIDHIKELVDKSRKNIEKDNPDLLTSGRIQLIVGDGRQGYP 216
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + T + L++QL PGGR+++PVG QNL DK +G
Sbjct: 217 AGAPYDAIHVGAAAPTLPQA---LIEQLKPGGRLIIPVGPQGAAQNLEQYDKTPEGQVTK 273
Query: 181 TTVVRGVRTNPL 192
T++ GV PL
Sbjct: 274 KTLM-GVVYVPL 284
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|348531162|ref|XP_003453079.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++R + PY + IGY A IS+PH+HA LELL DK+ GA LD+GSG
Sbjct: 53 MLATDR-GLYSR--DYPYADSPQSIGYRATISAPHMHAHALELLGDKLTEGASALDVGSG 109
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC A M GP GRV G+EH+ EL + SIKN+ + ELL GR++ V
Sbjct: 110 SGYLTACFARMTGPTGRVVGIEHIDELVQMSIKNVQADDPELLSSGRIKLVVGDGRLGYP 169
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
P+ + V + T + LL+QL PGGR+V+PVG Q L D+ +DG + +
Sbjct: 170 DGAPYDAIHVGAAAATVPKA---LLEQLKPGGRLVLPVGPDGGSQVLEQYDRQSDG-SFL 225
Query: 181 TTVVRGVRTNPLYRDRFQ 198
+ GV PL R Q
Sbjct: 226 KKALMGVVYVPLTDKRHQ 243
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|383856863|ref|XP_003703926.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 109/187 (58%), Gaps = 8/187 (4%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDR N+ + Y + IGYGA IS+PH+HA LE+L+DK++ GAR LD+GSG
Sbjct: 74 MSSVDRGNYTHP--SYAYVDSPQSIGYGATISAPHMHAYALEILEDKLRDGARALDVGSG 131
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC+A M GP G G++H+ EL +I NI + N ELL GRV+ V
Sbjct: 132 SGYLTACMAMMLGPNGLAIGIDHIPELKSFAISNIQRDNPELLKSGRVELVVGDGRLGYP 191
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTI- 179
P+ + V + +E L+DQL PGGR+V+P+G Q L +DK DG +
Sbjct: 192 EKAPYNAIHVGAAA---KEMPQALIDQLAPGGRLVLPMGPENSDQTLVQVDKTMDGKILK 248
Query: 180 --VTTVV 184
+T+VV
Sbjct: 249 KSLTSVV 255
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225456838|ref|XP_002278792.1| PREDICTED: protein-L-isoaspartate O-methyltransferase [Vitis vinifera] gi|297733662|emb|CBI14909.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 113/203 (55%), Gaps = 8/203 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDR F N PY QIGY A IS+PH+HA LELL++ ++PG LD+GSG
Sbjct: 35 METVDRA-LFVPDGNPPYVDSPMQIGYNATISAPHMHATCLELLQENLQPGMHALDVGSG 93
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVAYFWLRHL 119
+GYLTAC A M GP+G GVEH+ EL SSIKNI+K + LL +G ++ A
Sbjct: 94 TGYLTACFALMVGPQGCAVGVEHIPELVASSIKNIEKSAAAPLLKEGSLKLHAGDGRLGW 153
Query: 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTI 179
P+ + V + E L+DQL PGGRMV+PVG F Q+L ++DK DG +I
Sbjct: 154 PECAPYDAIHVGAAA---PEIPQPLIDQLKPGGRMVIPVGNIF--QDLKVVDKNLDG-SI 207
Query: 180 VTTVVRGVRTNPLYRDRFQQKKY 202
VR PL Q + Y
Sbjct: 208 SIRSETSVRYVPLTSREAQLRDY 230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 206 | ||||||
| ZFIN|ZDB-GENE-040426-1738 | 249 | pcmtl "l-isoaspartyl protein c | 0.825 | 0.682 | 0.426 | 7.9e-30 | |
| UNIPROTKB|E1BXJ0 | 228 | LOC423008 "Protein-L-isoaspart | 0.825 | 0.745 | 0.420 | 1.3e-29 | |
| UNIPROTKB|G3MZZ6 | 228 | PCMT1 "Protein-L-isoaspartate | 0.825 | 0.745 | 0.426 | 2.1e-29 | |
| UNIPROTKB|P15246 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.825 | 0.748 | 0.426 | 2.1e-29 | |
| ZFIN|ZDB-GENE-990415-134 | 266 | pcmt "l-isoaspartyl protein ca | 0.825 | 0.639 | 0.414 | 3.4e-29 | |
| UNIPROTKB|J9JIK8 | 208 | PCMT1 "Protein-L-isoaspartate | 0.825 | 0.817 | 0.426 | 4.4e-29 | |
| UNIPROTKB|P80895 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.825 | 0.748 | 0.426 | 4.4e-29 | |
| TAIR|locus:2157767 | 309 | PIMT2 "protein-l-isoaspartate | 0.825 | 0.550 | 0.440 | 1.2e-28 | |
| UNIPROTKB|F1NJV4 | 197 | PCMT1 "Protein-L-isoaspartate | 0.825 | 0.862 | 0.403 | 1.5e-28 | |
| UNIPROTKB|Q5F3N1 | 228 | PCMT1 "Protein-L-isoaspartate( | 0.825 | 0.745 | 0.403 | 1.5e-28 |
| ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++R + PY + IGY A IS+PH+HA LE+L DK+ GA LD+GSG
Sbjct: 53 MLATDR-GIYSR--DHPYADSPQSIGYKATISAPHMHAHALEVLSDKLTEGASALDVGSG 109
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC A M GP G+V G++H+ +L +SS+KN+ + ELL GR++ V
Sbjct: 110 SGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNVQADDPELLATGRIKLVVGDGRFGFP 169
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + T + LL+QL PGGR+V+PVG Q L D+ +DG
Sbjct: 170 DEAPYDAIHVGAAAPTLPKA---LLEQLKPGGRLVLPVGPEGGSQVLEQYDRQSDG 222
|
|
| UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 74/176 (42%), Positives = 102/176 (57%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
+L DR ++ PY + IGY A IS+PH+HA LELLKD++ GA+ LD+GSG
Sbjct: 32 LLATDRGHYIKYF---PYMDSPQSIGYKATISAPHMHAHALELLKDQLVEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SGYLTAC A M GP G+ GVEH+ EL SI+N+ + + LL GRV+ V +
Sbjct: 89 SGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDPTLLSSGRVKLVVGDGRQGYP 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + T + LL++L PGGR+++PVG Q L DK +DG
Sbjct: 149 EEAPYDAIHVGAAAPTVPQE---LLNELKPGGRLILPVGPEGANQVLMQYDKTSDG 201
|
|
| UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 75/176 (42%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 AEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 201
|
|
| UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 75/176 (42%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 AEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 201
|
|
| ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 73/176 (41%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR +F +R PY + IGY A IS+PH+HA LELL D + GA+ LD+GSG
Sbjct: 70 MLATDRSHF-SRC--NPYMDSPQSIGYQATISAPHMHAYALELLHDHLYEGAKALDVGSG 126
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG L+ C + M GP G+V G++H+ EL E SI N+ K + L+ GR++ +
Sbjct: 127 SGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDPSLITSGRIKLIVGDGRMGFT 186
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + T + LLDQL PGGR+++PVG Q L DKL DG
Sbjct: 187 EEAPYDAIHVGAAAPTVPQA---LLDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 239
|
|
| UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 75/176 (42%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 13 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 69
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 70 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 129
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 130 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 182
|
|
| UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 75/176 (42%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ V
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 201
|
|
| TAIR|locus:2157767 PIMT2 "protein-l-isoaspartate methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 78/177 (44%), Positives = 101/177 (57%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M +DR F V + Y IGY A IS+PH+HA L+LL+DK+ PG R LD+GSG
Sbjct: 114 MEALDR-GLFVPVGSSAYVDTPVPIGYNATISAPHMHATCLQLLEDKLHPGMRALDVGSG 172
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVAYFWLRHL 119
+GYLT C A M G EGRV GV+H+ EL + SIKNI+K + L +G + +
Sbjct: 173 TGYLTGCFALMVGAEGRVVGVDHIPELVDMSIKNIEKSVAASFLKKGSLSLHVGDGRKGW 232
Query: 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + E LLDQL PGGRMV+P+G F Q L +IDK DG
Sbjct: 233 QEFAPYDAIHVGAAA---SEIPQPLLDQLKPGGRMVIPLGTYF--QELKVIDKNEDG 284
|
|
| UNIPROTKB|F1NJV4 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 71/176 (40%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 1 MLATDRCHY---AKYNPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAKALDVGSG 57
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC + M GP+G+V G++H+ EL + SI N+ K + LL GRV+ +
Sbjct: 58 SGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYA 117
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 118 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 170
|
|
| UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 71/176 (40%), Positives = 100/176 (56%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRCHY---AKYNPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC + M GP+G+V G++H+ EL + SI N+ K + LL GRV+ +
Sbjct: 89 SGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYA 148
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 201
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9R115 | PIMT_YERPG | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| B1JJF4 | PIMT_YERPY | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| B0KSC8 | PIMT_PSEPG | 2, ., 1, ., 1, ., 7, 7 | 0.3314 | 0.7815 | 0.7594 | yes | N/A |
| A7HL14 | PIMT_FERNB | 2, ., 1, ., 1, ., 7, 7 | 0.3264 | 0.8689 | 0.8994 | yes | N/A |
| A7MTT6 | PIMT_VIBHB | 2, ., 1, ., 1, ., 7, 7 | 0.3384 | 0.8203 | 0.8125 | yes | N/A |
| A4TQ01 | PIMT_YERPP | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| Q57636 | PIMT_METJA | 2, ., 1, ., 1, ., 7, 7 | 0.3111 | 0.8106 | 0.7767 | yes | N/A |
| O27962 | PIMT2_ARCFU | 2, ., 1, ., 1, ., 7, 7 | 0.3209 | 0.7281 | 0.6849 | yes | N/A |
| A2BKH8 | PIMT_HYPBU | 2, ., 1, ., 1, ., 7, 7 | 0.3260 | 0.8058 | 0.6887 | yes | N/A |
| A3MY16 | PIMT_PYRCJ | 2, ., 1, ., 1, ., 7, 7 | 0.3496 | 0.7233 | 0.7198 | yes | N/A |
| Q8DC56 | PIMT_VIBVU | 2, ., 1, ., 1, ., 7, 7 | 0.3384 | 0.8203 | 0.8125 | yes | N/A |
| Q27873 | PIMT_CAEEL | 2, ., 1, ., 1, ., 7, 7 | 0.3930 | 0.8106 | 0.7422 | yes | N/A |
| Q0W2W0 | PIMT_UNCMA | 2, ., 1, ., 1, ., 7, 7 | 0.315 | 0.8300 | 0.9095 | yes | N/A |
| Q66EB9 | PIMT_YERPS | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| Q8TYL4 | PIMT_METKA | 2, ., 1, ., 1, ., 7, 7 | 0.3446 | 0.8058 | 0.7345 | yes | N/A |
| Q8ZBQ0 | PIMT_YERPE | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| A8AAV7 | PIMT_IGNH4 | 2, ., 1, ., 1, ., 7, 7 | 0.3260 | 0.8009 | 0.7819 | yes | N/A |
| Q1I655 | PIMT_PSEE4 | 2, ., 1, ., 1, ., 7, 7 | 0.3314 | 0.7669 | 0.7452 | yes | N/A |
| P15246 | PIMT_BOVIN | 2, ., 1, ., 1, ., 7, 7 | 0.3910 | 0.9466 | 0.8590 | yes | N/A |
| Q8TT93 | PIMT1_METAC | 2, ., 1, ., 1, ., 7, 7 | 0.3314 | 0.7766 | 0.6374 | yes | N/A |
| Q9URZ1 | PIMT_SCHPO | 2, ., 1, ., 1, ., 7, 7 | 0.3554 | 0.7524 | 0.6739 | yes | N/A |
| Q88MF0 | PIMT_PSEPK | 2, ., 1, ., 1, ., 7, 7 | 0.3314 | 0.7815 | 0.7594 | yes | N/A |
| Q123X2 | PIMT2_POLSJ | 2, ., 1, ., 1, ., 7, 7 | 0.3045 | 0.8834 | 0.8625 | yes | N/A |
| B8J9E3 | PIMT_ANAD2 | 2, ., 1, ., 1, ., 7, 7 | 0.3296 | 0.7572 | 0.7464 | yes | N/A |
| P80895 | PIMT_PIG | 2, ., 1, ., 1, ., 7, 7 | 0.3910 | 0.9466 | 0.8590 | yes | N/A |
| P23506 | PIMT_MOUSE | 2, ., 1, ., 1, ., 7, 7 | 0.3811 | 0.9466 | 0.8590 | yes | N/A |
| B2K581 | PIMT_YERPB | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| A2SF76 | PIMT_METPP | 2, ., 1, ., 1, ., 7, 7 | 0.33 | 0.8543 | 0.6542 | yes | N/A |
| Q1C474 | PIMT_YERPA | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| P22062 | PIMT_RAT | 2, ., 1, ., 1, ., 7, 7 | 0.3811 | 0.9466 | 0.8590 | yes | N/A |
| A5W820 | PIMT_PSEP1 | 2, ., 1, ., 1, ., 7, 7 | 0.3314 | 0.7815 | 0.7594 | yes | N/A |
| Q1CLR2 | PIMT_YERPN | 2, ., 1, ., 1, ., 7, 7 | 0.3128 | 0.8300 | 0.8221 | yes | N/A |
| Q12UV0 | PIMT_METBU | 2, ., 1, ., 1, ., 7, 7 | 0.3333 | 0.6601 | 0.6699 | yes | N/A |
| Q7MHQ8 | PIMT_VIBVY | 2, ., 1, ., 1, ., 7, 7 | 0.3384 | 0.8203 | 0.8125 | yes | N/A |
| A0B9U1 | PIMT_METTP | 2, ., 1, ., 1, ., 7, 7 | 0.3238 | 0.7912 | 0.7761 | yes | N/A |
| Q27869 | PIMT_DROME | 2, ., 1, ., 1, ., 7, 7 | 0.3654 | 0.8980 | 0.8185 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
| 4th Layer | 2.1.1.77 | 0.824 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 206 | |||
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 4e-42 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 4e-30 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 7e-26 | |
| PRK00312 | 212 | PRK00312, pcm, protein-L-isoaspartate O-methyltran | 5e-20 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 1e-18 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 7e-16 | |
| TIGR04364 | 394 | TIGR04364, methyltran_FxLD, methyltransferase, FxL | 1e-11 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 4e-10 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 4e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 6e-07 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 7e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-06 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-06 | |
| pfam08704 | 309 | pfam08704, GCD14, tRNA methyltransferase complex G | 8e-06 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-05 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 2e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 7e-05 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 1e-04 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-04 | |
| COG4798 | 238 | COG4798, COG4798, Predicted methyltransferase [Gen | 2e-04 | |
| TIGR04188 | 363 | TIGR04188, methyltr_grsp, methyltransferase, ATP-g | 3e-04 | |
| pfam01269 | 229 | pfam01269, Fibrillarin, Fibrillarin | 3e-04 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 3e-04 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 5e-04 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 6e-04 | |
| PRK13943 | 322 | PRK13943, PRK13943, protein-L-isoaspartate O-methy | 0.001 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.002 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.002 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.003 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 0.003 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 0.003 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 0.004 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.004 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 0.004 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 4e-42
Identities = 79/203 (38%), Positives = 98/203 (48%), Gaps = 33/203 (16%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
ML VDR+ F Y IGYG IS+PH+HA MLELL+ +KPG R+L+IGS
Sbjct: 25 MLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGS 82
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119
GSGYLTAC A M G G V +EH+ EL E + +N++K L V V
Sbjct: 83 GSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK-----LGLENVIVV-------- 129
Query: 120 LLTNPHGSTR----------VIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTI 169
G R I E L+DQL GGR+V+PVG Q L
Sbjct: 130 -----VGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGN-QVLQQ 183
Query: 170 IDKLADGYTIVTTVVRGVRTNPL 192
DK DG ++ + GVR PL
Sbjct: 184 FDKRNDGSVVIKDLE-GVRFVPL 205
|
Length = 210 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-30
Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L V R+ F E Y +IGYG IS+PH+ A M ELL+ +KPG ++L+IG+
Sbjct: 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESS---IKNIDKGN-SELLDQGRVQFVAYFW 115
GSGY A LA + G +G V +E + ELAE + ++ + N ++ G +
Sbjct: 87 GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL-- 144
Query: 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
P+ R+ + + + L+DQL GG +VMPVGE Q L +K
Sbjct: 145 -------APY--DRIYVTAAGPKIPEA-LIDQLKEGGILVMPVGE--YLQVLKRAEKRGG 192
Query: 176 GYTIVTTVVRGVRTNPL 192
I+ V V PL
Sbjct: 193 --EIIIKDVEPVAFVPL 207
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 7e-26
Identities = 64/180 (35%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
IG G IS+PH+ A+ML+LL+ +KPG R+L+IG+GSGY A LA + GRV +E +
Sbjct: 49 IGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERI 103
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFV----AYFWLRH-----LLLTNPHGSTRVIQSCW 135
ELAE + +N+ E L V + W +++T + V ++
Sbjct: 104 EELAEQARRNL-----ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA--AAPEVPEA-- 154
Query: 136 TKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195
LLDQL PGGR+V+PVG Q L I K DG + VR PL
Sbjct: 155 --------LLDQLKPGGRLVIPVGSGPA-QRLLRITKDGDG-NFERRDLFNVRFVPLVGG 204
|
Length = 209 |
| >gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 5e-20
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 37/203 (18%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
+ R+ F V E ++ K+ + IG G IS P++ A+M ELL+ +KPG R+L
Sbjct: 30 IEATPRELF----VPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRVQFV 111
+IG+GSGY A LA++ RV+ VE + L + + + + G +
Sbjct: 84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140
Query: 112 AY--FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTI 169
AY F R++ + E + LL+QL GG +V PVG + Q LT
Sbjct: 141 AYAPF-------------DRILVTAAAPEIPRA-LLEQLKEGGILVAPVGGEEQ-QLLTR 185
Query: 170 IDKLADGYTIVTTVVRGVRTNPL 192
+ K V+ VR PL
Sbjct: 186 VRKRGGR--FEREVLEEVRFVPL 206
|
Length = 212 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-18
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 23/198 (11%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R F + Y +IGYG IS+ H+ A M ELL +K G ++L+IG+
Sbjct: 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGT 85
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRVQFVAYFW 115
GSGY A +A + G G+V +E + ELAE + K + K + ++ G + +
Sbjct: 86 GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN-- 143
Query: 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
P+ R+ + + L++QL GG MV+PVG Q L ++K D
Sbjct: 144 -------APY--DRIYVTAAGPDIPKP-LIEQLKDGGIMVIPVGSYS--QELIRVEK--D 189
Query: 176 GYTIVTTVVRGVRTNPLY 193
I+ + V PL
Sbjct: 190 NGKIIKKKLGEVAFVPLI 207
|
Length = 212 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 7e-16
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 29/186 (15%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
ML V R+ F V+ E YR+ + + + GA IS+PH+ A M EL++ + PG +IL
Sbjct: 24 MLSVPREEF---VMPE-YRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPR--PGMKIL 77
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLD----QGRVQF 110
++G+GSGY A A G+VY VE V ELA + +NI++ G +++ G+
Sbjct: 78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137
Query: 111 VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+ +++T + I S L+ QL GG +V+PV E GQ L +
Sbjct: 138 EKHAPFDAIIVT---AAASTIPSA---------LVRQLKDGGVLVIPVEEGV-GQVLYKV 184
Query: 171 DKLADG 176
K +
Sbjct: 185 VKRGEK 190
|
Length = 205 |
| >gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 41/143 (28%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVME- 86
+S+PHI A MLE ++PG R+L+IGSG GY A LA + GP G V V E V +
Sbjct: 65 VSAPHIQAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDR 121
Query: 87 ----LAESSIKNI-------DKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCW 135
LA + + + G EL R+ W I W
Sbjct: 122 ARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAW--------------DIPPAW 167
Query: 136 TKEEYNSWLLDQLVPGGRMVMPV 158
LDQL PGGR+V+P+
Sbjct: 168 ---------LDQLAPGGRLVVPL 181
|
Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI Y D +I A + I PG+R+L+ G+GSG LTA LA GPEG V E
Sbjct: 76 QIIYPKDAG--YIVA------RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI 127
Query: 84 VMELAESSIKNIDK 97
+ A+++ +N+ +
Sbjct: 128 REDFAKTARENLSE 141
|
Length = 256 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-07
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-Q 109
G R+LD G+GSG A AGP+ RV GVE E A + + + + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAA-RAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 110 FVAYFWLR----HLLLTNP-----HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
L L+L NP G + + + + + L L PGG +V+
Sbjct: 60 ARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYD--RFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-07
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+K G ++LD+G G+GYLT LA GP V G++ E E + +N K
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK 50
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-07
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 23/136 (16%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMEL 87
++ + A L L+ ++PG + DIG+G+G +T A + P GRVY +E ++L
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDL 58
Query: 88 AESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH-----GSTRVIQSCWTKEEYNS 142
E +++ N +++ LL +P GS ++Q E
Sbjct: 59 IERNLRRFGVSNIVIVEGD------APEAPEDLLPDPDAVFVGGSGGLLQ------EILE 106
Query: 143 WLLDQLVPGGRMVMPV 158
+ +L PGGR+V+
Sbjct: 107 AVERRLRPGGRIVLNA 122
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD--QGR 107
PGAR+LDIG G+G L P RV GV+ E+ E + +N + QG
Sbjct: 1 PGARVLDIGCGTGSLAI-ELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 108 VQFVAYFWLRH---LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
+ ++ + + L PGGR+V+
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLELLDALASL----------LKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++PG R+LD+G G G LA GPEGRV G++
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGID 51
|
Length = 241 |
| >gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 14 VNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG 73
+ P+R QI Y DIS MLEL KPG+ + + G+GSG L+ +A
Sbjct: 77 LALPHRT---QILYTPDISLII---MMLEL-----KPGSVVCESGTGSGSLSHAIARTVA 125
Query: 74 PEGRVYGVE 82
P G +Y E
Sbjct: 126 PTGHLYTFE 134
|
GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Length = 309 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSI 92
+ L LL RILD+G+GSG + LA GP+ V V + LA +
Sbjct: 99 LVEAALALLLQL---DKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENA 154
Query: 93 K-----NIDKGNSELLDQGRVQFVAYFWLRHLLLTNP 124
+ + S+L + R +F L+++NP
Sbjct: 155 ERNGLVRVLVVQSDLFEPLRGKF-------DLIVSNP 184
|
Length = 280 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L L K +++ G ILDIG G+G +T + + G G+VY V+ + + +N +K
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87
|
Length = 198 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-05
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 42 ELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
LL + K G R+L++G+GSG + A +V GV+ + +E A+ + K
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAK 66
|
Length = 188 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 29/136 (21%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ I A L L+ +PG R+ DIG+G+G +T A AGP GRV +E E E
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALEL 73
Query: 91 SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH-------GS---TRVIQSCWTKEEY 140
+N + ++ V L P G ++++ W +
Sbjct: 74 IERNAAR-----FGVDNLEVVEG-DAPEALPDLPSPDAIFIGGGGNIEEILEAAWER--- 124
Query: 141 NSWLLDQLVPGGRMVM 156
L PGGR+V
Sbjct: 125 -------LKPGGRLVA 133
|
Length = 187 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 47 KIKPGARILDIGSGSGYLTACL--AYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
++KPG +LD+GSG G+ C A GP G+V GV+ E+ + N K
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125
|
Length = 272 |
| >gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 29 ADISSPHIHAQMLELLKDK------------IKPGARILDIGSGSGYLTACLAYMAGPEG 76
A ++ P A ++ +DK +KPGA ++D+ G GY T + GP+G
Sbjct: 17 AALADPSRPAA--DMARDKARHPGEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKG 74
Query: 77 RVYGV 81
+VY
Sbjct: 75 KVYAY 79
|
Length = 238 |
| >gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 11 TRVVNEPYRIKSRQIGYGADISS---PHIHAQMLELLKDKIKPGARILDIGSGSGYLTAC 67
T++ + + G SS P + A+MLE L ++ G R+L+IG+G+GY A
Sbjct: 67 TQLDGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAAL 124
Query: 68 LAYMAGPEGRVYGVE---HVMELAESSI 92
L + G + V VE + A S++
Sbjct: 125 LCHRLG-DDNVTSVEVDPGLAARAASAL 151
|
Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363 |
| >gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEF 106
|
Length = 229 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 30 DISSPHIHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-- 81
D+ S IH L KD K G + LD+ G+G T L+ AG G+V G+
Sbjct: 25 DVISFGIH----RLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDI 80
Query: 82 -EHVMELAESSIKNIDKGNSELL 103
E++++ E K K N E L
Sbjct: 81 NENMLKEGEKKAKEEGKYNIEFL 103
|
Length = 233 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 27 YGADISSPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ + P I + LL+ ++ RIL+IG+ GY +A +GR+ +E
Sbjct: 34 FARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD 93
Query: 85 MELAESSIKNIDKGNSE 101
E AE + +N+ + +
Sbjct: 94 EERAEIARENLAEAGVD 110
|
Length = 219 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
|
Length = 293 |
| >gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.001
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 2 LRVDRKNFFTR-----VVNEPYRIKSRQIGYGADISS-PHIHAQMLELLKDKIKPGARIL 55
L V R+ F T+ V E + S G SS P + A +E + + G R+L
Sbjct: 28 LEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 85
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---A 112
+IG G+GY A ++ + G +G V VE+ ++ E I K N L V FV
Sbjct: 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE-----IAKRNVRRLGIENVIFVCGDG 140
Query: 113 YFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 172
Y+ + P+ + + E +W QL GGR+++P+ NL + +
Sbjct: 141 YYGVPEF---APYDV--IFVTVGVDEVPETW-FTQLKEGGRVIVPI-------NLKLSRR 187
|
Length = 322 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.002
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LE LK R+LD+G+GSG + LA P+ RV V +++ ++ + + N+
Sbjct: 81 LERLKKG---PLRVLDLGTGSGAIALALAKER-PDARVTAV----DISPEALA-VARKNA 131
Query: 101 ELLDQGRVQFVAYFWLR-------HLLLTNP 124
L V+F+ W L+++NP
Sbjct: 132 ARLGLDNVEFLQSDWFEPLPGGKFDLIVSNP 162
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 35 HIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLA 69
+ ++L LLK+K A +LDIG G+GYLT L
Sbjct: 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALL 53
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
G +LD+G+G+G L A A + G RV V+ E E I + N+E L G V+F
Sbjct: 46 GKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALE-----IARANAEELL-GDVEF 97
Query: 111 VA----YFWLR-HLLLTNP 124
V F + ++ NP
Sbjct: 98 VVADVSDFRGKFDTVIMNP 116
|
Length = 198 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELL 103
++ G LD+ G+ + LA GPEG V G+ E+++ + +K+ N EL+
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGN 99
LE L+ +K G +LD+G GSG L A + G + +V GV+ + A E++ +N
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKL-GAK-KVVGVD-IDPQAVEAARENARLNG 209
Query: 100 SELLDQ 105
ELL Q
Sbjct: 210 VELLVQ 215
|
Length = 300 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.004
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKN 94
+ ++L+ L G R+LD G G+G L+ LA G V V +++E ++
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAV----DISEQMVQM 92
Query: 95 IDKGNSELLDQGRVQFV 111
G V+F
Sbjct: 93 ARNRAQGRDVAGNVEFE 109
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.004
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A++L L ++KPG R+LDIG G+G L L G V GV+ A I ++
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE-RGF--DVTGVD--PSPAAVLIFSLFD 64
Query: 98 GNSELLDQGRVQFVAYFWLRHLL--LTNPHGSTRVIQSCWTKEEYNSWLL 145
+ G+ + +L L +P ++Q + LL
Sbjct: 65 APDPAVLAGKYDLI---TAFEVLEHLPDPP---ALLQQLRELLKPGGVLL 108
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.004
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+PG ++LD+ G+G L LA G G V G+
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82
|
Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 206 | |||
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.97 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.97 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.95 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.95 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.95 | |
| KOG1661|consensus | 237 | 99.93 | ||
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.92 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.88 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.72 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.7 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.69 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.69 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.68 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.67 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.63 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.63 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.62 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.61 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.61 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.59 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.59 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.59 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.58 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.58 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.58 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.58 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.58 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.57 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.57 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.57 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.56 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.56 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.56 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.56 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.55 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.55 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.53 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.53 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.52 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.52 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.52 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.51 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.51 | |
| KOG1540|consensus | 296 | 99.51 | ||
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.5 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.5 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.5 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.5 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.49 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.49 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.49 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.48 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.48 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.47 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.47 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.47 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.47 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.46 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.46 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.45 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.45 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.45 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.44 | |
| PLN02476 | 278 | O-methyltransferase | 99.44 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.44 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.44 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.43 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.43 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.43 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.43 | |
| KOG1271|consensus | 227 | 99.43 | ||
| PRK05785 | 226 | hypothetical protein; Provisional | 99.43 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.42 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.42 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.42 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.42 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.42 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.41 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.41 | |
| KOG1270|consensus | 282 | 99.41 | ||
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.4 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.4 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.4 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.39 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.39 | |
| KOG1541|consensus | 270 | 99.38 | ||
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.38 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.38 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.38 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.38 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.36 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.36 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.35 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.35 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.34 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.33 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.33 | |
| KOG4300|consensus | 252 | 99.33 | ||
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.33 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.32 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.32 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.31 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.31 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.3 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.29 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.29 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.28 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.28 | |
| PLN02366 | 308 | spermidine synthase | 99.28 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.28 | |
| KOG2904|consensus | 328 | 99.28 | ||
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.27 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.25 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.25 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.25 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.24 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.24 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.23 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.21 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.21 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.21 | |
| KOG2915|consensus | 314 | 99.2 | ||
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.18 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.18 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.18 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.15 | |
| KOG1975|consensus | 389 | 99.14 | ||
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.14 | |
| KOG2899|consensus | 288 | 99.14 | ||
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.12 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.12 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.11 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.1 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.1 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.1 | |
| PLN02823 | 336 | spermine synthase | 99.09 | |
| KOG3010|consensus | 261 | 99.09 | ||
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.08 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.08 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.07 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.06 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.06 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.05 | |
| KOG3191|consensus | 209 | 99.04 | ||
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.04 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.03 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.03 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.02 | |
| KOG2361|consensus | 264 | 99.01 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.01 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.0 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.0 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.99 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.98 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.98 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.97 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.96 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.96 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.96 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.95 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.95 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.94 | |
| KOG1663|consensus | 237 | 98.93 | ||
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.92 | |
| KOG1499|consensus | 346 | 98.88 | ||
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.88 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.87 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.86 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.82 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.81 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.8 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.77 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.77 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.77 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.76 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.75 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.75 | |
| KOG3420|consensus | 185 | 98.75 | ||
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.73 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.72 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.71 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.69 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.68 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.67 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.66 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.65 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.65 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.64 | |
| KOG2940|consensus | 325 | 98.55 | ||
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.55 | |
| KOG0820|consensus | 315 | 98.54 | ||
| KOG1500|consensus | 517 | 98.53 | ||
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.51 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.5 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.47 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.45 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.44 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.44 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.43 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.43 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.43 | |
| KOG1596|consensus | 317 | 98.42 | ||
| KOG3115|consensus | 249 | 98.41 | ||
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.41 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.4 | |
| KOG2187|consensus | 534 | 98.38 | ||
| KOG1122|consensus | 460 | 98.35 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.31 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.29 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.27 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.25 | |
| KOG3045|consensus | 325 | 98.24 | ||
| KOG4589|consensus | 232 | 98.22 | ||
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.22 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.13 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.1 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.09 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.06 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.0 | |
| KOG1709|consensus | 271 | 97.94 | ||
| KOG2730|consensus | 263 | 97.94 | ||
| KOG2352|consensus | 482 | 97.9 | ||
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.9 | |
| KOG3178|consensus | 342 | 97.87 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.84 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.84 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.83 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.8 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.77 | |
| KOG1331|consensus | 293 | 97.77 | ||
| KOG2198|consensus | 375 | 97.71 | ||
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.65 | |
| KOG3987|consensus | 288 | 97.63 | ||
| KOG2671|consensus | 421 | 97.6 | ||
| KOG1269|consensus | 364 | 97.59 | ||
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.58 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.58 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.54 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.51 | |
| KOG4058|consensus | 199 | 97.5 | ||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.48 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.44 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.38 | |
| KOG0024|consensus | 354 | 97.31 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.31 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.31 | |
| KOG1562|consensus | 337 | 97.27 | ||
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.23 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.22 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.21 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.17 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.11 | |
| KOG3201|consensus | 201 | 97.11 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.81 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.76 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.71 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.71 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 96.67 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 96.65 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.55 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.55 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.42 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.35 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.33 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.32 | |
| KOG2793|consensus | 248 | 96.24 | ||
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.18 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.08 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 96.02 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.92 | |
| KOG1099|consensus | 294 | 95.86 | ||
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.85 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.84 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.83 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.82 | |
| KOG0822|consensus | 649 | 95.82 | ||
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.79 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.74 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.71 | |
| PHA01634 | 156 | hypothetical protein | 95.66 | |
| KOG1501|consensus | 636 | 95.62 | ||
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.61 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 95.58 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.56 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.55 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 95.44 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.44 | |
| KOG1098|consensus | 780 | 95.19 | ||
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.16 | |
| KOG2798|consensus | 369 | 95.11 | ||
| KOG2352|consensus | 482 | 95.09 | ||
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.76 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.69 | |
| KOG1253|consensus | 525 | 94.54 | ||
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.41 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 94.38 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 94.18 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.16 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.15 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.13 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 94.05 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.03 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 93.9 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.8 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 93.74 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.72 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.66 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.56 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 93.52 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 93.51 | |
| KOG3924|consensus | 419 | 93.48 | ||
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 93.46 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.31 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.28 | |
| KOG1227|consensus | 351 | 93.24 | ||
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 93.2 | |
| KOG2651|consensus | 476 | 93.17 | ||
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 93.12 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 93.11 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 93.08 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.98 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.9 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 92.82 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.82 | |
| KOG2078|consensus | 495 | 92.81 | ||
| KOG2360|consensus | 413 | 92.63 | ||
| PLN02494 | 477 | adenosylhomocysteinase | 92.63 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 92.47 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 92.45 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.39 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 92.39 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 92.32 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 92.24 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 92.03 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 92.01 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 92.0 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.88 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 91.8 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 91.67 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 91.56 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 91.53 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 91.48 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 91.4 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 91.26 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 91.19 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 90.78 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 90.77 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 90.68 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.68 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 90.59 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.56 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 90.47 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 90.44 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 90.3 | |
| KOG2912|consensus | 419 | 90.15 | ||
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 90.04 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 90.03 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.96 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 89.66 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 89.48 | |
| KOG0023|consensus | 360 | 89.42 | ||
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 89.32 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 89.21 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 88.98 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 88.81 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 88.77 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 88.63 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 88.55 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.44 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 88.13 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 88.1 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 87.79 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 87.39 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 86.98 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.91 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 86.87 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 86.62 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 86.46 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 86.34 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 86.18 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 86.18 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 86.05 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 85.88 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 85.58 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 85.42 | |
| KOG2782|consensus | 303 | 85.41 | ||
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 85.26 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 85.2 | |
| KOG0022|consensus | 375 | 85.14 | ||
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 85.04 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 84.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 84.99 | |
| KOG2920|consensus | 282 | 84.86 | ||
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 84.86 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 84.77 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 84.73 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 84.72 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 84.25 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.24 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 84.16 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 83.59 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 83.26 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 83.23 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 82.73 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 82.53 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 82.38 | |
| KOG1198|consensus | 347 | 81.3 | ||
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 80.97 | |
| KOG1197|consensus | 336 | 80.9 | ||
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 80.29 |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=190.90 Aligned_cols=176 Identities=39% Similarity=0.551 Sum_probs=161.5
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.+ ..+|.|.+.+++.++.++.|.+.+.|++.|. +.++.+|||||||+|+.+..+++..+ +|+
T Consensus 24 ~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~ 98 (209)
T COG2518 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVV 98 (209)
T ss_pred HHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEE
Confidence 57899999999999 9999999999999999999999999999998 99999999999999999999999875 999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc----cccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEE
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF----WLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~ 155 (206)
++|+.+...+.|++++.. .+..|+.++++| +++..|| |.|++....+.+++.+.+.|++||+++
T Consensus 99 siEr~~~L~~~A~~~L~~-----lg~~nV~v~~gDG~~G~~~~aPy-------D~I~Vtaaa~~vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 99 SIERIEELAEQARRNLET-----LGYENVTVRHGDGSKGWPEEAPY-------DRIIVTAAAPEVPEALLDQLKPGGRLV 166 (209)
T ss_pred EEEEcHHHHHHHHHHHHH-----cCCCceEEEECCcccCCCCCCCc-------CEEEEeeccCCCCHHHHHhcccCCEEE
Confidence 999999999999999998 556689999999 4444555 999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 156 MPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
+..... ..+.+.++.+...+.|.. +.++.+.|.|+.+.
T Consensus 167 ~PvG~~-~~q~l~~~~k~~~~~~~~-~~l~~v~~vPl~~~ 204 (209)
T COG2518 167 IPVGSG-PAQRLLRITKDGDGNFER-RDLFNVRFVPLVGG 204 (209)
T ss_pred EEEccC-CcEEEEEEEEcCCCcEEE-eeeccceeeecCCc
Confidence 999844 358899999988888999 99999999999883
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=191.99 Aligned_cols=184 Identities=36% Similarity=0.481 Sum_probs=151.1
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.. ..+|.|.+.+++.++.++.|.+++.+++.+. ++++.+|||||||+|+.+..++...++.++|+
T Consensus 24 ~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv 101 (209)
T PF01135_consen 24 FRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV 101 (209)
T ss_dssp HHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE
T ss_pred HHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEE
Confidence 68999999999998 9999999999999999999999999999998 99999999999999999999999988888999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+.+...+.|++++.. .+..++.++.+|.....+ ..+.||.|++....+.++..+.+.|++||++++...
T Consensus 102 ~vE~~~~l~~~A~~~l~~-----~~~~nv~~~~gdg~~g~~---~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 102 SVERDPELAERARRNLAR-----LGIDNVEVVVGDGSEGWP---EEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEESBHHHHHHHHHHHHH-----HTTHSEEEEES-GGGTTG---GG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred EECccHHHHHHHHHHHHH-----hccCceeEEEcchhhccc---cCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence 999999999999999987 344689999999322111 234569999999999999999999999999999988
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
. ...+.+.++.|..++.|.. +....+.|.|+.+.+
T Consensus 174 ~-~~~~~l~~~~k~~~g~~~~-~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 174 Q-GGSQRLVRITKKGDGEFSR-EELFPVRFVPLVGGE 208 (209)
T ss_dssp S-SSSEEEEEEEEETTTEEEE-EEEEEE---B-BSCC
T ss_pred c-CCceEEEEEEEeCCCcEEE-EEEeeEEEEeccCCC
Confidence 7 5669999999999899999 999999999998754
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=177.91 Aligned_cols=181 Identities=32% Similarity=0.422 Sum_probs=156.2
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|... ..+|.|.+.+++.++.++.|.+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 28 ~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEE
Confidence 68999999999998 9999999999999999999999999999997 88999999999999999999998876667999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++++++.+++++... +..+++++.+|... ... +.+.||+|++....+.+++.+.+.|+|||++++...
T Consensus 106 ~vE~~~~~~~~a~~~l~~~-----g~~~v~~~~gd~~~-~~~--~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 106 TIERIPELAEKAKKTLKKL-----GYDNVEVIVGDGTL-GYE--ENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred EEeCCHHHHHHHHHHHHHc-----CCCCeEEEECCccc-CCC--cCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEc
Confidence 9999999999999999873 34579999999322 122 456789999998888889999999999999999876
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
.. .+.+.++.+.. +.+.. ..++.+.|.|+.+.
T Consensus 178 ~~--~~~~~~~~~~~-~~~~~-~~~~~~~f~~~~~~ 209 (212)
T PRK13942 178 SY--SQELIRVEKDN-GKIIK-KKLGEVAFVPLIGK 209 (212)
T ss_pred CC--CcEEEEEEEEC-CEEEE-EEeccEEEEecccC
Confidence 54 47777777754 66888 89999999998764
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=173.42 Aligned_cols=181 Identities=34% Similarity=0.376 Sum_probs=152.0
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.. ..+|.|.+.+++.++.++.|...+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 24 ~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~ 101 (205)
T PRK13944 24 MLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVY 101 (205)
T ss_pred HHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEE
Confidence 68999999999988 8999999999999999999999999999886 77889999999999999999988775567999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++...+. ..+++++.+|..+.. . ..+.||+|+++...+++++++.+.|+|||++++...
T Consensus 102 ~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~~~~~-~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 102 TVEIVKELAIYAAQNIERLGY----WGVVEVYHGDGKRGL-E--KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCcccCC-c--cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEc
Confidence 999999999999999876321 135889999843221 1 345789999999999999999999999999998876
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeecc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLY 193 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (206)
... .+.+..+.+. ++.|.. +.+..+.|.|+.
T Consensus 175 ~~~-~~~~~~~~~~-~~~~~~-~~~~~~~f~pl~ 205 (205)
T PRK13944 175 EGV-GQVLYKVVKR-GEKVEK-RAITYVLFVPLR 205 (205)
T ss_pred CCC-ceEEEEEEEe-CCEEEE-EEeceEEEEecC
Confidence 554 3666777775 456888 889999999873
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=173.50 Aligned_cols=184 Identities=35% Similarity=0.453 Sum_probs=156.6
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+++.. ..+|.+.+.+++.++.++.|...+.+++.+. +.++.+|||+|||+|+.+..+++..++.++|+
T Consensus 29 ~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~ 106 (215)
T TIGR00080 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106 (215)
T ss_pred HHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 67899999999988 8999999999999999999999999999987 78999999999999999999998876667899
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++... +..+++++.+|.... .. ..+.||+|+++.....+++.+.+.|+|||++++...
T Consensus 107 ~vD~~~~~~~~A~~~~~~~-----g~~~v~~~~~d~~~~-~~--~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 107 SIERIPELAEKAERRLRKL-----GLDNVIVIVGDGTQG-WE--PLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred EEeCCHHHHHHHHHHHHHC-----CCCCeEEEECCcccC-Cc--ccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEc
Confidence 9999999999999999873 345789999984321 11 235679999999888899999999999999999876
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQ 198 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (206)
. ..+.+..+.+. .+.|.. ..+..+.|.|+.+...+
T Consensus 179 ~--~~~~~~~~~~~-~~~~~~-~~~~~~~~~pl~~~~~~ 213 (215)
T TIGR00080 179 E--YLQVLKRAEKR-GGEIII-KDVEPVAFVPLVGGEGF 213 (215)
T ss_pred C--CceEEEEEEEe-CCEEEE-EEeeeEEEEeCCCCccC
Confidence 6 34667777664 466888 99999999999876654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=162.31 Aligned_cols=194 Identities=41% Similarity=0.624 Sum_probs=170.8
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCc-eE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RV 78 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~-~v 78 (206)
|++++|..|.|..+ ..+|.|.++.+|++..++.|.+++.+.+.|..++.||.+.||+|+|+|+++..++...+..+ ..
T Consensus 32 ~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 32 MRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred HHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 68999999999998 99999999999999999999999999999999999999999999999999999987776444 45
Q ss_pred EEEeCCHHHHHHHHHhhhccC-----ccccCCCceEEEEcc----cccccccCCCCCCeeEEEecCChHHHHHHHHhccc
Q psy10573 79 YGVEHVMELAESSIKNIDKGN-----SELLDQGRVQFVAYF----WLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLV 149 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~i~~~~~d----~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~ 149 (206)
.|||.-++.++.+++++...- .+.....++.++.+| +.+..+| |.|.+.+....+++++...|+
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y-------DaIhvGAaa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY-------DAIHVGAAASELPQELLDQLK 184 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc-------ceEEEccCccccHHHHHHhhc
Confidence 999999999999999998633 233456778899999 3344445 999999999999999999999
Q ss_pred CCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccccccccc
Q psy10573 150 PGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKY 202 (206)
Q Consensus 150 ~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (206)
+||.+++........++++...+...+.... +..++..++|+.++..++..+
T Consensus 185 ~gGrllip~~~~~~~q~~~~~dk~~~gki~~-~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 185 PGGRLLIPVGQDGGTQYLRQIDKNEDGKIKL-RTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred cCCeEEEeecccCceeEEEeecccccCceee-eEeeceEEEeccccccccCCC
Confidence 9999999998766679999999999999999 999999999999998877543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=157.07 Aligned_cols=180 Identities=31% Similarity=0.403 Sum_probs=150.3
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|+++||+.|+|+.. ..+|.|...+.+.++.++.|.....+++.+. +.++.+|||+|||+|..+..+++..+ +++
T Consensus 30 ~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~ 104 (212)
T PRK00312 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVF 104 (212)
T ss_pred HHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEE
Confidence 57899999999887 8999999999999999999999999999886 78889999999999999988777643 899
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++... +..+++++.+|..+. + .+.+.||+|+++...+.+++.+.+.|+|||++++...
T Consensus 105 ~vd~~~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~--~-~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 105 SVERIKTLQWEAKRRLKQL-----GLHNVSVRHGDGWKG--W-PAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEeCCHHHHHHHHHHHHHC-----CCCceEEEECCcccC--C-CcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence 9999999999999998873 334688998884221 1 0236789999999999999999999999999999987
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
....+....+.+ .++.+.. ..++.+.|.|+.+..
T Consensus 177 -~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 177 -GEEQQLLTRVRK-RGGRFER-EVLEEVRFVPLVKGE 210 (212)
T ss_pred -CCCceEEEEEEE-cCCeEEE-EEEccEEEEecCCCC
Confidence 444466667766 4556888 889999999987643
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=151.98 Aligned_cols=182 Identities=24% Similarity=0.297 Sum_probs=140.2
Q ss_pred Cccccccccccccc--cCccccccccc-cCc---cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC
Q psy10573 1 MLRVDRKNFFTRVV--NEPYRIKSRQI-GYG---ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (206)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~ 74 (206)
|++|||+.|+|+.. ..+|.|...+. +.+ +.++.|.+...+++.+. +.++.+|||+|||+|.++..+++..+.
T Consensus 27 ~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~ 104 (322)
T PRK13943 27 FLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 104 (322)
T ss_pred HHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence 68999999999976 77899998875 444 46678999999988886 788899999999999999999987754
Q ss_pred CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEE
Q psy10573 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRM 154 (206)
Q Consensus 75 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l 154 (206)
.+.|+++|+++.+++.|++++... +..++.++.+|.... .. ..+.||+|+++...+..++.+.+.|+|||++
T Consensus 105 ~g~VvgVDis~~~l~~Ar~~l~~~-----g~~nV~~i~gD~~~~-~~--~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~L 176 (322)
T PRK13943 105 KGLVVSVEYSRKICEIAKRNVRRL-----GIENVIFVCGDGYYG-VP--EFAPYDVIFVTVGVDEVPETWFTQLKEGGRV 176 (322)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEeCChhhc-cc--ccCCccEEEECCchHHhHHHHHHhcCCCCEE
Confidence 568999999999999999988763 335788998883322 11 2356799999999888888999999999999
Q ss_pred EEEecCC-CCCeeEEEEEecCCCceEEEEEEeeEEeeeccc
Q psy10573 155 VMPVGEP-FKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++..... ...+......+. .+.+.. ...+.+.+.+..+
T Consensus 177 vv~~~~~l~~~~~~~~~~r~-~~~~~~-~~~~~~~~l~~~G 215 (322)
T PRK13943 177 IVPINLKLSRRQPAFLFKKK-DPYLVG-NYKLETRFIKAGG 215 (322)
T ss_pred EEEeCCccCCCCceEEEEec-CCCceE-EEEEEeeEEcccc
Confidence 8876543 222334444443 445666 6667777777643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=132.10 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=93.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+|.+|||+|||||-.+..+++..+ .++++++|+|+.|++.+++++.+.+ ..+++|+.+| .+.+|| ++++
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~d-Ae~LPf--~D~s 119 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGD-AENLPF--PDNS 119 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEec-hhhCCC--CCCc
Confidence 45899999999999999999999886 7899999999999999999998732 2349999999 777889 9999
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||++++..++++ .+++++|+|||||++++.-.+.+
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 999999888754 77999999999999988776654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=131.39 Aligned_cols=114 Identities=27% Similarity=0.441 Sum_probs=82.7
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+. ..++.+|||+|||+|..+..+++..++.++|+++|+|+.+++.+++++... ...+++++.+| .+.
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~-----~~~~i~~v~~d-a~~ 109 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE-----GLQNIEFVQGD-AED 109 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-----T--SEEEEE-B-TTB
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-----CCCCeeEEEcC-HHH
Confidence 4445444 678899999999999999999988777889999999999999999998872 23489999999 666
Q ss_pred cccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++ ++++||+|++...++. .+++++++|||||++++...+.+
T Consensus 110 lp~--~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 110 LPF--PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp --S---TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred hcC--CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 888 9999999999877643 67999999999999998877655
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=109.20 Aligned_cols=101 Identities=28% Similarity=0.348 Sum_probs=81.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
|+.+|||+|||+|.++..+++.. +.++++++|+|+.+++.+++++.... ...+++++.+|+ ....- ..+.||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~-~~~~~--~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDA-EFDPD--FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCC-HGGTT--TSSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECcc-ccCcc--cCCCCC
Confidence 67899999999999999999865 67799999999999999999994421 247899999996 22222 245589
Q ss_pred EEEecC-ChH---------HHHHHHHhcccCCcEEEEEe
Q psy10573 130 VIQSCW-TKE---------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 130 ~i~~~~-~~~---------~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|++.. ..+ .+++.+.+.|+|||++++..
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 322 25789999999999999874
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=121.74 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..++.++++|+|+|+++++.|+++...... ....+++++.+| ....++ ++++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d-~~~lp~--~~~s 145 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGD-ATDLPF--DDCY 145 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcc-cccCCC--CCCC
Confidence 57789999999999999999888766667999999999999999877542100 112478999999 455667 8899
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...++ .+++++.++|||||++++..+..+
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 99999977654 367999999999999999877654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-16 Score=112.09 Aligned_cols=103 Identities=25% Similarity=0.332 Sum_probs=85.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc--cCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL--LTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~ 126 (206)
..+.+|||+|||+|.++..+++..++.++++|+|+++.+++.+++++.. ....+++++.+|..+ .+ + + +
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-----~~~~ni~~~~~d~~~-l~~~~--~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-----LGLDNIEFIQGDIED-LPQEL--E-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-----TTSTTEEEEESBTTC-GCGCS--S-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-----ccccccceEEeehhc-ccccc--C-C
Confidence 4578999999999999999996665778999999999999999998887 334589999999544 33 3 4 7
Q ss_pred CeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.||+|++..+++ .+++.+.+.|+++|++++..+.
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 899999987754 3678999999999999887665
|
... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=110.79 Aligned_cols=124 Identities=31% Similarity=0.367 Sum_probs=104.4
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
+..++.+.+..-.+..|. +.++..++|+|||+|..+..++ ..+|.+++|++|.++++++..+.|++. .+.+|
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~-----fg~~n 85 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAAR-----FGVDN 85 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHH-----hCCCc
Confidence 344778888888888887 8999999999999999999999 556999999999999999999999998 45679
Q ss_pred eEEEEcccccccccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 108 VQFVAYFWLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++++.++.++..+ +++ ++|.|++... .+.+++.+...|+|||++++......
T Consensus 86 ~~vv~g~Ap~~L~-~~~--~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 86 LEVVEGDAPEALP-DLP--SPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred EEEEeccchHhhc-CCC--CCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 9999999554333 112 6799999766 46689999999999999999877644
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=105.20 Aligned_cols=116 Identities=26% Similarity=0.305 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
..+...+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++... ...+++++.+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~ 76 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRF-----GVSNIVIVEG 76 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHh-----CCCceEEEec
Confidence 445566666664 6677899999999999999999876 5579999999999999999988763 2346888888
Q ss_pred ccccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|....... ..++||+|++.... ..+++.+.+.|+|||.+++...
T Consensus 77 ~~~~~~~~--~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 77 DAPEALED--SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cccccChh--hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 73322222 23578999987644 4588999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=116.97 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=91.3
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++... ...+++++.+|. .
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~-~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVELVHGNA-M 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEech-h
Confidence 44555554 678899999999999999999988767779999999999999999988752 235789999984 3
Q ss_pred ccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..++ ++++||+|+++..++ .+++++.++|+|||.+++...+.+
T Consensus 107 ~~~~--~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 107 ELPF--DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cCCC--CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 3445 778999999876543 467889999999999988765543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=100.10 Aligned_cols=89 Identities=30% Similarity=0.373 Sum_probs=72.5
Q ss_pred EEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEec
Q psy10573 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSC 134 (206)
Q Consensus 55 LDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~ 134 (206)
||+|||+|..+..+++. +..+++++|+++.+++.++++... .++.++.+| ....++ ++++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d-~~~l~~--~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGD-AEDLPF--PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESB-TTSSSS---TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeeh-HHhCcc--ccccccccccc
Confidence 79999999999999987 345999999999999999998765 456688888 455577 89999999998
Q ss_pred CChHH------HHHHHHhcccCCcEEEE
Q psy10573 135 WTKEE------YNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 135 ~~~~~------~~~~~~~~L~~gG~l~~ 156 (206)
..+++ +++++.++|||||++++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 88754 67899999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=119.69 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. +++++|+|+++.+++.++++....+. ..+++++.+|. ...++ ++++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~-~~~~~--~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADA-LNQPF--EDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCc-ccCCC--CCCCc
Confidence 567899999999999999998865 35999999999999999988765321 24799999993 44566 88999
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|++...+++ +++++.++|+|||++++..+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999776643 6789999999999999987643
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=109.25 Aligned_cols=123 Identities=23% Similarity=0.251 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
++...+....+..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++...+. ..++.+
T Consensus 23 ~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~ 96 (198)
T PRK00377 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVL 96 (198)
T ss_pred CCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEE
Confidence 555666666666665 78899999999999999999988765667999999999999999999876321 257888
Q ss_pred EEcccccccccCCCCCCeeEEEecCC---hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+|..+..+. ..+.||.|+++.. ...+++.+.+.|+|||++++.....
T Consensus 97 ~~~d~~~~l~~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 97 IKGEAPEILFT--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred EEechhhhHhh--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 88884332222 2457899999543 5668899999999999998765443
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=116.69 Aligned_cols=126 Identities=25% Similarity=0.156 Sum_probs=99.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.||.+|||||||+|.+++.+++..+ .+|+|+++|++..+.+++++...+++ .+++++..|+.+. .+.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~------~e~ 137 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF------EEP 137 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc------ccc
Confidence 79999999999999999999998863 59999999999999999998874432 4899998885432 233
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 192 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (206)
||.|++..++++ +++.+.+.|+|||.+++.+......... ....|.. +.+|+....|.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~------~~~~~i~-~yiFPgG~lPs 203 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR------RFPDFID-KYIFPGGELPS 203 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc------cchHHHH-HhCCCCCcCCC
Confidence 699999988865 6789999999999999988876632222 3345666 66777766663
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=114.29 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++...+. ..+++++.+|..+..++ ++++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~--~~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQH--LETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhh--cCCCC
Confidence 556899999999999999998753 4999999999999999998876321 25789999985443334 57789
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|++...+++ +++++.++|+|||++++..++..
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99999887654 56899999999999998766643
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=114.90 Aligned_cols=133 Identities=25% Similarity=0.248 Sum_probs=101.8
Q ss_pred ccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
.......++..|.....++..+. +.||.+|||.|+|+|.++..+++..+|.++|+.+|+.++..+.|++++...+.
T Consensus 15 ~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-- 90 (247)
T PF08704_consen 15 LSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-- 90 (247)
T ss_dssp HTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--
T ss_pred HhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--
Confidence 34556778889999999999998 99999999999999999999999999999999999999999999999998543
Q ss_pred cCCCceEEEEcccccccccC-CCCCCeeEEEecCChHH-HHHHHHhcc-cCCcEEEEEecCCC
Q psy10573 103 LDQGRVQFVAYFWLRHLLLT-NPHGSTRVIQSCWTKEE-YNSWLLDQL-VPGGRMVMPVGEPF 162 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~~~~~-~~~~~~D~i~~~~~~~~-~~~~~~~~L-~~gG~l~~~~~~~~ 162 (206)
..++++...|..+ ..|. --++.+|.|+.+.+-++ .+..+.++| ++||++++.+++.+
T Consensus 91 --~~~v~~~~~Dv~~-~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 91 --DDNVTVHHRDVCE-EGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp --CTTEEEEES-GGC-G--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred --CCCceeEecceec-ccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 2589999999432 2220 01367899999988765 778899999 89999999999876
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=107.12 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
++++.+|||+|||+|..+..++... +.++++++|+++.+++.++++.+..+ ..+++++.+|..+ .. ..++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~-~~---~~~~ 112 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEE-FG---QEEK 112 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhh-CC---CCCC
Confidence 4568999999999999999998765 67799999999999999999988733 3469999998433 21 1557
Q ss_pred eeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++.. .+.+++.+.+.|+|||++++......
T Consensus 113 fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 149 (187)
T PRK00107 113 FDVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRDP 149 (187)
T ss_pred ccEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCCh
Confidence 899999654 45788999999999999998876543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=106.13 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=88.2
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+.. .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++..++. .+++++..|+
T Consensus 19 ~t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~ 90 (170)
T PF05175_consen 19 GTRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESST
T ss_pred HHHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc-----cccccccccc
Confidence 34456666663 278899999999999999999876 666799999999999999999998443 3489999884
Q ss_pred ccccccCCCCCCeeEEEecCCh-----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ .. ++++||+|++|+++ ..+++.+.+.|+|||.+++......
T Consensus 91 ~~--~~--~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 91 FE--AL--PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp TT--TC--CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cc--cc--cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 32 22 56888999999875 3466888999999999987665543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-14 Score=105.69 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=92.3
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
+..++...+...+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++... +..+
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~-----~~~~ 91 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRF-----GVKN 91 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----CCCC
Confidence 334555666666777775 6788999999999999999998654 5679999999999999999998763 2347
Q ss_pred eEEEEcccccccccCCCCCCeeEEEecC--ChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 108 VQFVAYFWLRHLLLTNPHGSTRVIQSCW--TKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~~~D~i~~~~--~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++++.+|..+.... ....+|.++... .+..+++.+.+.|+|||.+++.....
T Consensus 92 v~~~~~d~~~~~~~--~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 92 VEVIEGSAPECLAQ--LAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred eEEEECchHHHHhh--CCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 89998884332111 112236665543 34678899999999999999987764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=112.35 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=81.9
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.+++. +++++.+|...
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~ 83 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRD 83 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhh
Confidence 33444443 4678999999999999999998876 667999999999999999652 46788888432
Q ss_pred ccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. . ++++||+|+++..+++ +++++.++|+|||.+++..+.
T Consensus 84 -~-~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 84 -W-K--PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -C-C--CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2 2 4578899999888755 567899999999999987654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=112.62 Aligned_cols=104 Identities=31% Similarity=0.391 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.++++... .+..+++++.+|. ...++ ++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-----~g~~~v~~~~~d~-~~l~~--~~~~ 146 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-----AGYTNVEFRLGEI-EALPV--ADNS 146 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-----cCCCCEEEEEcch-hhCCC--CCCc
Confidence 57889999999999999888887776777899999999999999998776 2335788998883 44455 7789
Q ss_pred eeEEEecCCh------HHHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
||+|+++..+ ..+++++.++|+|||++++...
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999988653 4578999999999999998643
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=108.77 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=85.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++... ...++.++.+|.....+..+++++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~-----~~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEE-----GLTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHc-----CCCCEEEEecCHHHHHHHHcCcccc
Confidence 367899999999999999998776 6679999999999999999988763 2357999999952333301277889
Q ss_pred eEEEecCC--------------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWT--------------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~--------------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++.+ ...+++++.++|+|||++++.+....
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 99998643 24578999999999999999876654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=106.05 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=81.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|..+..++... +.++++++|.++.+++.++++.... +..+++++.+|..+ .. ..++||
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~-----~~~~i~~i~~d~~~-~~---~~~~fD 111 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAEL-----GLNNVEIVNGRAED-FQ---HEEQFD 111 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHh-----CCCCeEEEecchhh-cc---ccCCcc
Confidence 47899999999999999987654 6679999999999999999888763 23479999999433 11 356789
Q ss_pred EEEecC--ChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCW--TKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~--~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|+++. ....+++.+.+.|+|||.+++......
T Consensus 112 ~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 112 VITSRALASLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred EEEehhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 999985 234566888999999999998765443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-14 Score=114.53 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=82.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|.++..+++. +++|+|+|+++.+++.|+.+..... ...++.++.+| .+..++ ++++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~d-ae~l~~--~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTT-AEKLAD--EGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecC-HHHhhh--ccCCCC
Confidence 5679999999999999988763 4599999999999999998765411 12478899988 344445 677899
Q ss_pred EEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|++...+++ +++++.++|+|||.+++.+.+..
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999887765 67899999999999999986643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-14 Score=110.50 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=88.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+. +.++.+|||+|||+|..+..+++.. .++++++|+++.+++.+++++.. ..++.++.+|.
T Consensus 40 ~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~ 108 (263)
T PTZ00098 40 ATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDI 108 (263)
T ss_pred HHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCc
Confidence 3555556654 7889999999999999998887653 35999999999999999987643 24788999884
Q ss_pred ccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++++||+|++...+ ..+++++.++|+|||.++++.+..
T Consensus 109 -~~~~~--~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 109 -LKKDF--PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred -ccCCC--CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 34456 78899999986543 346789999999999999886643
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=103.81 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=91.7
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
++.+.+.+.+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++...+ ..++++
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~ 85 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNIDI 85 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEE
Confidence 455666666777775 6788999999999999999998875 66799999999999999999887632 246888
Q ss_pred EEcccccccccCCCCCCeeEEEecCC---hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.+|.. ..+ .++||+|+++.. +..+++.+.+.|+|||.+++....
T Consensus 86 ~~~d~~--~~~---~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 86 IPGEAP--IEL---PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EecCch--hhc---CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 888832 122 356799998764 455778899999999999887543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=108.18 Aligned_cols=128 Identities=26% Similarity=0.273 Sum_probs=106.5
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
+..+.++..|.....++..+. +.|+.+|+|.|+|+|.++.+++...++.++++++|+.++.++.|++|+......
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--- 145 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--- 145 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---
Confidence 445667777888888888887 999999999999999999999998889999999999999999999999884322
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChHH-HHHHHHhcccCCcEEEEEecCCC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE-YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++++..+|..+. .+ ...||.|+.+.+-++ +++.+.++|+|||.+++.+++.+
T Consensus 146 -d~v~~~~~Dv~~~-~~---~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 146 -DRVTLKLGDVREG-ID---EEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred -cceEEEecccccc-cc---ccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 3488888884332 11 226799999877654 88999999999999999988866
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-14 Score=109.47 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=86.1
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+...+...+...+.++.+|||+|||+|..+..+++.. .+.++++++|+|+.+++.|++++...+. ..+++++.+|
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d 117 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGD 117 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCC
Confidence 3444444444446788999999999999998887753 3677999999999999999999876321 2478999988
Q ss_pred cccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. ..++ +.+|+|+++..++ .+++++++.|+|||.+++..
T Consensus 118 ~~-~~~~----~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 118 IR-DIAI----ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hh-hCCC----CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43 2222 3469999876653 36789999999999999875
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=110.18 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-++.+|||+|||-|.++..+++.. .+|+|+|+++..+++|+.+..+.+. .+++.+.. .+.... ..++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~-~edl~~--~~~~F 125 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV------NIDYRQAT-VEDLAS--AGGQF 125 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc------cccchhhh-HHHHHh--cCCCc
Confidence 478999999999999999999854 4999999999999999999887332 24455544 222222 34788
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+|..+++| ++..|.+++||||++++++.+.+
T Consensus 126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 99999888876 55789999999999999998865
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-14 Score=110.92 Aligned_cols=102 Identities=31% Similarity=0.357 Sum_probs=76.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+++|.+|||||||+|.++..+++..+ ++|+|+++|++..+.+++.+...++ ..++++...|+.+ + +++
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~~---~---~~~ 127 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYRD---L---PGK 127 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GGG---------S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeeccc---c---CCC
Confidence 68999999999999999999998863 6999999999999999999987443 2578888888532 1 226
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||.|++...+++ +++++.+.|+|||++++.....
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 799999877654 5799999999999998775543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-14 Score=109.88 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=83.5
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+|+.+++.+++++ +++.++.+|...
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~ 87 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS 87 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc
Confidence 34444443 4678899999999999999998876 6679999999999999998764 357788888422
Q ss_pred ccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. . +.++||+|+++..+++ +++++.++|+|||.+++.++.
T Consensus 88 ~--~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 88 W--Q--PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred c--C--CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 1 2 4457899999988754 678999999999999987654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-14 Score=109.52 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=78.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+... ..+++++|+|+.+++.++++.. ...++.+| .+..++ ++++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d-~~~~~~--~~~~f 104 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA----------ADHYLAGD-IESLPL--ATATF 104 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcC-cccCcC--CCCcE
Confidence 35679999999999999888763 3599999999999999987642 24577788 344556 78899
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++..++ .++.++.++|+|||.++++++...
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 9999987764 367899999999999999987654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=110.31 Aligned_cols=136 Identities=22% Similarity=0.221 Sum_probs=97.3
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..|.......+.+..++.|.....+...+...+ .++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|++
T Consensus 85 ~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 334444445555556666655444444443222 345799999999999999999876 66799999999999999999
Q ss_pred hhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHH
Q psy10573 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNS 142 (206)
Q Consensus 94 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~ 142 (206)
++..++. ..++.++.+|+.+ .+ ++++||+|++|++. ..+++
T Consensus 164 n~~~~~~----~~~i~~~~~D~~~--~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~ 235 (284)
T TIGR03533 164 NIERHGL----EDRVTLIQSDLFA--AL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA 235 (284)
T ss_pred HHHHcCC----CCcEEEEECchhh--cc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH
Confidence 9987332 1468999999432 23 45678999998652 12457
Q ss_pred HHHhcccCCcEEEEEecC
Q psy10573 143 WLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 143 ~~~~~L~~gG~l~~~~~~ 160 (206)
.+.+.|+|||++++.+..
T Consensus 236 ~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 236 EAADHLNENGVLVVEVGN 253 (284)
T ss_pred HHHHhcCCCCEEEEEECc
Confidence 778899999999988764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=97.05 Aligned_cols=101 Identities=26% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D 129 (206)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++..... ..+++++.+|..... .+ ++++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~--~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPL--PDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTC--TTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhc--cCceeE
Confidence 4689999999999999998875 45999999999999999999987432 257999999944333 34 788999
Q ss_pred EEEecCChH--------------HHHHHHHhcccCCcEEEEEec
Q psy10573 130 VIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 130 ~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|++++++. .+++++.+.|+|||.+++.++
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998863 356899999999999998765
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=104.64 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ ..+++++..|.. ..++ +++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~-~~~~---~~~ 95 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLN-NLTF---DGE 95 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChh-hCCc---CCC
Confidence 446689999999999999999875 3499999999999999998877632 245788888843 2223 356
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~ 157 (206)
||+|++...++ .+++++.++|+|||.+++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 89999887653 4678999999999996543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=109.55 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=85.7
Q ss_pred HHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGP--EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
+...+.+.+.+.+ .+..+|||+|||+|.++..+++.... ...++|+|+|+.+++.|+++. +++.+..
T Consensus 70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~ 139 (272)
T PRK11088 70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCV 139 (272)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEE
Confidence 4444444454333 34578999999999999999876532 237899999999999997653 4678888
Q ss_pred cccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+| ....++ ++++||+|++... +...+++.++|+|||++++.+++..
T Consensus 140 ~d-~~~lp~--~~~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 140 AS-SHRLPF--ADQSLDAIIRIYA-PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ee-cccCCC--cCCceeEEEEecC-CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 88 344566 7889999998665 3456889999999999999887654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-14 Score=104.87 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.....+||||||+|.++..++... |..+++|+|+++.+++.+++++... +..+++++.+|........++++++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~-----~l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKL-----GLKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHh-----CCCCEEEEccCHHHHHHhhCCCCce
Confidence 355799999999999999999876 7779999999999999999888763 3358999999943322111256789
Q ss_pred eEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|.|+++.+. +.+++.+.++|+|||.+++.+....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 999987643 2477899999999999999877654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=106.11 Aligned_cols=114 Identities=28% Similarity=0.337 Sum_probs=87.9
Q ss_pred HHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
....+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++. +++.++.+|
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d 88 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGD 88 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecc
Confidence 3444555554322 345789999999999999998876 66789999999999999987653 267888888
Q ss_pred cccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
....++ ++++||+|+++..++ .+++++.++|+|||.+++..+...
T Consensus 89 -~~~~~~--~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 89 -AEKLPL--EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred -hhhCCC--CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 334455 778899999987764 467899999999999999876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=111.95 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=86.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. ...+.+|||+|||+|..+..+++.. |..+++++|.|+.+++.++++++.+..+ ...+++++..|..
T Consensus 217 trllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEcccc
Confidence 334555554 2334699999999999999998876 7789999999999999999998764321 1236788888732
Q ss_pred cccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .+ ++++||+|++|++++ .+++.+.+.|+|||.+++...
T Consensus 292 ~--~~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 292 S--GV--EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred c--cC--CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 2 12 456789999998864 356788999999999998853
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=103.58 Aligned_cols=112 Identities=31% Similarity=0.434 Sum_probs=88.1
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. +.++.+|||+|||+|.++..++...++.++++++|+++..++.++++... ...+++++..|. .
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~-~ 79 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDA-D 79 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccc-c
Confidence 34444444 67889999999999999999988776677999999999999999887332 125788888883 3
Q ss_pred ccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..++ ++++||+|++...++ .+++++.++|+|||.+++..+.
T Consensus 80 ~~~~--~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 80 GLPF--PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cCCC--CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 3345 678899999976654 4778999999999999987654
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=104.13 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=83.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+..+|.|+|||+|..+..++++. |...++|+|.|++|++.|+.++ ++.+|..+|...-. +...
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~----p~~~ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWK----PEQP 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcC----CCCc
Confidence 4667899999999999999999998 8889999999999999998765 57889999932211 3334
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|++++|..++. ++..+...|.|||.+.+.++...
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 499999999865 56788999999999999988754
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=110.51 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=95.5
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
...|.........+..++.|. .+.+++.+...+.++.+|||+|||+|..+..++... +.++++++|+|+.+++.++++
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpe-TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPE-TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCcc-HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 444555555555455555554 334444443345567799999999999999988765 667999999999999999999
Q ss_pred hhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHHH
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNSW 143 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~~ 143 (206)
+...+ .+++++.+|+.+.... ..++||+|++|++. ..+++.
T Consensus 295 a~~~g------~rV~fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~ 366 (423)
T PRK14966 295 AADLG------ARVEFAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQG 366 (423)
T ss_pred HHHcC------CcEEEEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHH
Confidence 87632 3689999995332111 23578999998863 123455
Q ss_pred HHhcccCCcEEEEEecCC
Q psy10573 144 LLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 144 ~~~~L~~gG~l~~~~~~~ 161 (206)
+.+.|+|||.+++.....
T Consensus 367 a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 367 APDRLAEGGFLLLEHGFD 384 (423)
T ss_pred HHHhcCCCcEEEEEECcc
Confidence 667899999998876553
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=115.54 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=88.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. +.++.+|||+|||+|..+..+++.. +++++|+|+|+.+++.|+++... ...+++++.+|+
T Consensus 255 te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~------~~~~v~~~~~d~- 323 (475)
T PLN02336 255 TKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG------RKCSVEFEVADC- 323 (475)
T ss_pred HHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc------CCCceEEEEcCc-
Confidence 444555554 5678899999999999999888765 45999999999999999887643 124689999993
Q ss_pred cccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++++||+|++...++ .+++++.++|+|||.+++..+..
T Consensus 324 ~~~~~--~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 324 TKKTY--PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccCCC--CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 33445 778899999987764 47789999999999999886643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=105.08 Aligned_cols=102 Identities=29% Similarity=0.389 Sum_probs=81.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+ ..++.++.+|+.+ .+ ++++|
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~--~~--~~~~f 155 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFE--PL--PGGKF 155 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhc--cC--cCCce
Confidence 345699999999999999999876 56799999999999999999987632 3468999998433 23 56789
Q ss_pred eEEEecCChH--------------------------------HHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTKE--------------------------------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~~--------------------------------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++++++. .+++.+.+.|+|||.+++....
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 9999976531 3457788899999999987543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=108.75 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=96.4
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccCC--CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..|.........+..++.|.....+...+...+. +..+|||+|||+|.++..++... +..+++++|+|+.+++.|++
T Consensus 97 ~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~ 175 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEI 175 (307)
T ss_pred ceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Confidence 3344444444445555666554444444432222 23689999999999999998876 66799999999999999999
Q ss_pred hhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHH
Q psy10573 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNS 142 (206)
Q Consensus 94 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~ 142 (206)
++...+. ..+++++.+|+.+ .+ ++++||+|+++++. ..+++
T Consensus 176 n~~~~~l----~~~i~~~~~D~~~--~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~ 247 (307)
T PRK11805 176 NIERHGL----EDRVTLIESDLFA--AL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA 247 (307)
T ss_pred HHHHhCC----CCcEEEEECchhh--hC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH
Confidence 9987332 1468999999432 22 45678999998642 13457
Q ss_pred HHHhcccCCcEEEEEecCC
Q psy10573 143 WLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 143 ~~~~~L~~gG~l~~~~~~~ 161 (206)
.+.+.|+|||.+++.+...
T Consensus 248 ~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 248 EAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHHhcCCCCEEEEEECcC
Confidence 7888999999999876653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=103.88 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+|||+|||+|..+..+++.. .+.++++++|+|+.+++.|++++..... ..+++++.+|+. ..++ .
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~-~~~~----~ 121 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIR-HVEI----K 121 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChh-hCCC----C
Confidence 4678899999999999999998765 2577999999999999999998865221 246899999843 2222 2
Q ss_pred CeeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+|++...+++ +++++.++|+|||.+++...
T Consensus 122 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 122 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4688888766543 56899999999999998854
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=102.49 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=77.8
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ . ++.+...|.
T Consensus 19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~- 86 (195)
T TIGR00477 19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDI- 86 (195)
T ss_pred hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccc-
Confidence 344555554 445679999999999999999874 3499999999999999988776532 1 256666663
Q ss_pred cccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
...++ +++||+|++...++ .+++++.++|+|||.+++..
T Consensus 87 ~~~~~---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 87 NAAAL---NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred hhccc---cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 22222 35689998876543 46789999999999866553
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-13 Score=105.89 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=84.1
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
.....++.+.....++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++..++.. .++.+...+.
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~~ 218 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIYL 218 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeccc
Confidence 344444455444567899999999999999887754 2 348999999999999999998874321 2455555441
Q ss_pred ccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
... .+++||+|+++...+ .++..+.+.|+|||.++++....
T Consensus 219 ---~~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 219 ---EQP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ---ccc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 122 456789999987655 46688899999999999876543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=101.65 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPE-----GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 122 (206)
..++.++||++||||-.+..+.+..+.. .+|++.|+++.++.+++++..+..+ -..+++.|+.+| .+.+||
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~d-AE~LpF- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGD-AEDLPF- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCC-cccCCC-
Confidence 3456899999999999999998877432 7999999999999999999865332 122458999999 777888
Q ss_pred CCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 123 NPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++++||..++.... +..+++++++|||||++.+-.++.
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99999999887665 457799999999999998666554
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=107.40 Aligned_cols=117 Identities=28% Similarity=0.357 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+......++++.++..++.+|||+|||||.+++.+++.. . .+++|+|++|.+++.+++++..|+... .++....
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A-~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~ 219 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG-A-KKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGF 219 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC-C-ceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccc
Confidence 345666677777667899999999999999999988754 3 389999999999999999999855421 1111111
Q ss_pred ccccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+ . ... ...+.||+|++|-.. ..+...+.+.|+|||+++++-.-
T Consensus 220 ~-~--~~~-~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 220 L-L--LEV-PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred c-c--hhh-cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 1 1 111 123577999997643 34668889999999999998644
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-13 Score=102.79 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
+.++.+|||+|||+|.++..+++..+ .+.|+++|+++.+++.+.+++.. ..++.++.+|...... ..+ .+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhc-cc
Confidence 67899999999999999999998874 66999999999999987766543 2478888888432111 111 24
Q ss_pred CeeEEEecCChH----HHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+||+|+++...+ .+++++.+.|||||.++++++
T Consensus 141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 589999866532 246899999999999999644
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=107.97 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+...+.+++.+.+...++.+|||+|||||.+++..++.. . .+|+++|+++.+++.|++|+..++.+ .++.+...
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A-~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~~~ 218 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-A-KKVVAIDIDPLAVEAARENAELNGVE----DRIEVSLS 218 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-B-SEEEEEESSCHHHHHHHHHHHHTT-T----TCEEESCT
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEEEe
Confidence 456777777777777889999999999999999888753 3 38999999999999999999986543 34444211
Q ss_pred ccccccccCCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
... ..+.||+|++|-..+- +...+.+.|+|||.++++-.-..
T Consensus 219 -----~~~--~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 219 -----EDL--VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE 263 (295)
T ss_dssp -----SCT--CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred -----ccc--ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence 112 4477799999876553 55677889999999999855433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=103.11 Aligned_cols=108 Identities=26% Similarity=0.271 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.....+|||+|||+|..+..++++.. ..++++||+++++.+.|+++...+.. ..+++++++|..+.... ....+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~-~~~~~ 115 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKA-LVFAS 115 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhc-ccccc
Confidence 44578999999999999999998863 37999999999999999999987443 36899999994433221 24457
Q ss_pred eeEEEecCCh------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+||++. +.+++.+.++||+||.+.++.+..
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 8999999884 335678889999999999887653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=93.39 Aligned_cols=90 Identities=32% Similarity=0.441 Sum_probs=68.5
Q ss_pred EEEEcccCchHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 54 ILDIGSGSGYLTACLAYMA--GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
|||+|||+|..+..+.+.+ ++..+++++|+|+.+++.++++....+ .+++++.+|+ ...++ .+++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~-~~l~~--~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADA-RDLPF--SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCT-TCHHH--HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCH-hHCcc--cCCCeeEE
Confidence 7999999999999999876 334699999999999999999987522 3789999994 33445 67789999
Q ss_pred EecCC-h--------HHHHHHHHhcccCCc
Q psy10573 132 QSCWT-K--------EEYNSWLLDQLVPGG 152 (206)
Q Consensus 132 ~~~~~-~--------~~~~~~~~~~L~~gG 152 (206)
++... + ..+++++.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99443 4 347789999999998
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=111.79 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=88.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++.+.+ ..++.++.+|......+ .+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~~--~~~~ 307 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTEY--VQDT 307 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhhh--hhcc
Confidence 6788999999999999999999887667799999999999999999998733 34688998884322212 3567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++ ..++..+.+.|+|||+++.++++..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 8999998775 1246788999999999999999865
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-13 Score=107.47 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=81.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++... .+++++.+| ....++ ++++|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD-~e~lp~--~~~sF 179 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGD-AEDLPF--PTDYA 179 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEecc-HHhCCC--CCCce
Confidence 467899999999999999888776 446999999999999999987543 467888888 444556 78889
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|+++..++ ..++++.++|+|||.+++...
T Consensus 180 DvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred eEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999987654 467899999999999987643
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=102.25 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=89.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....++..+.+ ..++.+|||+|||+|+.+..++...++.++++++|+++++++.|++++...+.+ .+++++.+|.
T Consensus 55 ~~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda 129 (234)
T PLN02781 55 DEGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccH
Confidence 34445544442 567889999999999999999887766789999999999999999999885432 5799999994
Q ss_pred ccccc-c--CCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEE
Q psy10573 116 LRHLL-L--TNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~~~~-~--~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+..+ + +.+.++||+|+++..- ..+++.+.+.|+|||++++.
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33211 0 0124678999998653 45778889999999998864
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=104.77 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=82.3
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+.+.++.-+... +.++.+|||+|||+|.++..+++..++.+.||++|+++.+.+...+.... ..|+.++..|
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~D 189 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIED 189 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECC
Confidence 344443333322 68899999999999999999999987778999999998766554443322 1478888888
Q ss_pred cccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEE
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~ 157 (206)
......+....+++|+|+++...+. +..++.+.|||||.+++.
T Consensus 190 a~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 190 ARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 4332222223457899999776432 446788999999999985
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=108.16 Aligned_cols=99 Identities=26% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. +++|+++|+|+++++.+++++.. .++++...|... . +++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~---l---~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRD---L---NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhh---c---CCC
Confidence 5788999999999999999998764 35999999999999999988743 246777777321 1 356
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++...++ .+++++.++|+|||.+++......
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 79999876654 367889999999999999876544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=102.25 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||||||+|.++..+++.. |..+++++|+++.+++.|++++.... ..++++++.+|..+...- ..++
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~--~~~~ 136 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAV--HRHS 136 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHh--CCCC
Confidence 3556899999999999999998876 77899999999999999999876421 136899999994333221 2356
Q ss_pred eeEEEecCC----------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWT----------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~----------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++.. ...+++.+.+.|+|||++++..++..
T Consensus 137 yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 137 TDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 799998631 14577999999999999999766543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=102.23 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=86.8
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
...|...+...++...... -...+.+.+. .+.++.+|||+|||+|.++..+++..++.+.|+++|+++. .
T Consensus 19 ~d~~~~~~~~~~~~~r~~~--kl~~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~- 88 (209)
T PRK11188 19 SDKYVQQAQKKGLRSRAWF--KLDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D- 88 (209)
T ss_pred cCHHHHHHhhcCCchhHHH--hhHHHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c-
Confidence 4555555555554433111 1222222222 2577899999999999999999988766779999999881 0
Q ss_pred hhccCccccCCCceEEEEccccccc-------ccCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccC
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHL-------LLTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVP 150 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~ 150 (206)
..+++.++++|+.... ++ ..++||+|+++... ..+++.+.++|+|
T Consensus 89 ---------~~~~v~~i~~D~~~~~~~~~i~~~~--~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp 157 (209)
T PRK11188 89 ---------PIVGVDFLQGDFRDELVLKALLERV--GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP 157 (209)
T ss_pred ---------CCCCcEEEecCCCChHHHHHHHHHh--CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1246889999943321 24 67789999997632 2366889999999
Q ss_pred CcEEEEEecCCC
Q psy10573 151 GGRMVMPVGEPF 162 (206)
Q Consensus 151 gG~l~~~~~~~~ 162 (206)
||.+++.++...
T Consensus 158 GG~~vi~~~~~~ 169 (209)
T PRK11188 158 GGSFVVKVFQGE 169 (209)
T ss_pred CCEEEEEEecCc
Confidence 999999877655
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=98.94 Aligned_cols=100 Identities=25% Similarity=0.251 Sum_probs=79.1
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~ 125 (206)
.++|+.+|||+|||.|.+...+.+. .++..+|+|++++.+..|.++ .+.++++|...... | ++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f--~d 73 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADF--PD 73 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhC--CC
Confidence 3789999999999999999998875 556999999999998888753 57799999555544 6 99
Q ss_pred CCeeEEEecCChHHHH---HHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTKEEYN---SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~---~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++||.|+.+..++++. .-+.++|+-|...+++.++-.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 9999999998887532 233455667888888877643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=105.38 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|.+...++.... +.++..|||+|||+|.++..++.. ..+++|+|+++.++..+++++...+ ..+++++
T Consensus 166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~ 235 (329)
T TIGR01177 166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVK 235 (329)
T ss_pred CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEE
Confidence 45666777776664 788999999999999998887653 3499999999999999999987633 2347888
Q ss_pred EcccccccccCCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+|.. ..++ ++++||+|++++++ ..+++.+.+.|+|||++++..++..
T Consensus 236 ~~D~~-~l~~--~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 236 RGDAT-KLPL--SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred ecchh-cCCc--ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 88843 3444 56789999998652 3467888999999999999887654
|
This family is found exclusively in the Archaea. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=103.77 Aligned_cols=102 Identities=26% Similarity=0.341 Sum_probs=80.3
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
.+|||+|||+|.++..++... +..+++++|+|+.+++.+++++...+. ..+++++.+|+.+ ++ +.++||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~--~~--~~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFE--PL--AGQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhc--cC--cCCCccEE
Confidence 699999999999999998876 667999999999999999999876332 1358999999543 22 34478999
Q ss_pred EecCCh-------------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 132 QSCWTK-------------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 132 ~~~~~~-------------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++++. ..+++.+.+.|+|||.+++.+....
T Consensus 187 vsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 187 VSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ 248 (284)
T ss_pred EECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 998542 1245777889999999999887643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=106.09 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=88.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~ 127 (206)
..+..+||||||+|.++..++... |...++|+|+++.++..+.+++... +..|+.++.+|+... ..+ ++++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~-----gL~NV~~i~~DA~~ll~~~--~~~s 192 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELL-----NLKNLLIINYDARLLLELL--PSNS 192 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEECCHHHhhhhC--CCCc
Confidence 456799999999999999999887 7789999999999999999988773 346899999994332 234 8899
Q ss_pred eeEEEecCChH------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|.|+++.+.+ .+++.+.++|+|||.+.+.+-...
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99999987653 578999999999999999877644
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=102.47 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..++...++.+.|+++|+++.+++.+++++... +..++.++..|... ... ..+.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-----g~~~v~~~~~D~~~-~~~--~~~~ 140 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-----GVLNVAVTNFDGRV-FGA--AVPK 140 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-----CCCcEEEecCCHHH-hhh--hccC
Confidence 678899999999999999999888766679999999999999999999873 33578888888322 121 2345
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++ ..+++.+.+.|+|||+++.++.+..
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8999987653 1266788899999999999988765
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=102.42 Aligned_cols=112 Identities=23% Similarity=0.244 Sum_probs=85.7
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
+.+++.+. ...+.+|||+|||.|.++..+++.. |..+++.+|++..+++.+++++..++. .+..++..|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~-----~~~~v~~s~~~- 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV-----ENTEVWASNLY- 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC-----CccEEEEeccc-
Confidence 34445554 3445599999999999999999887 678999999999999999999998443 34345555521
Q ss_pred ccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+. .+ +||.|++|+++| .+++...+.|++||.+.+......
T Consensus 219 -~~v--~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 219 -EPV--EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred -ccc--cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 111 23 779999999985 366788999999999999887543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=111.32 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc--cCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL--LTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~ 125 (206)
..++.+|||+|||+|..+..+++.. ++++++|+|+|+.+++.++++....+ .++.++.+|..+ .+ + ++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~d-Lp~~f--ed 485 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAIN-LSSSF--EK 485 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHh-Ccccc--CC
Confidence 3467899999999999998888776 77899999999999999998765411 357888888432 33 4 78
Q ss_pred CCeeEEEecCChH-------------------HHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKE-------------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~-------------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++||+|+++..++ .+++++.++|||||++++...
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999999876554 345788999999999999754
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=100.83 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=79.5
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
++|||+|||+|..+..+++.. +.++++++|+|+.+++.+++++...+. ..+++++..|... .++ .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~-~~~---~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAK-DPF---PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEeccccc-CCC---CCCCCEe
Confidence 379999999999999998876 567999999999999999998876332 2478898888432 233 3578999
Q ss_pred EecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 132 QSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 132 ~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++...++ .+++++.++|+|||.+++....
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9876554 4778999999999999987653
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=95.77 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..++ .+++++.+|+.+ . ..++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~---~--~~~~ 82 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFK---G--VRGK 82 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccc---c--cCCc
Confidence 3456789999999999999998754 3 89999999999999999987632 257888888432 1 2457
Q ss_pred eeEEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++++++ +.+++++.++|+|||.+++......
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 8999998664 2357888999999999998876654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=101.19 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=89.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...++..+.. ..++++|||+|+++|+.+..++...++.++++++|.+++..+.|+++++..+.+ .+++++.+|..
T Consensus 106 ~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~ 180 (278)
T PLN02476 106 QAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHH
Confidence 3343444332 567899999999999999999988766789999999999999999999985532 58999999944
Q ss_pred cccc-c--CCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 117 RHLL-L--TNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 117 ~~~~-~--~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
+..+ + .-..++||+|+++..-.. +++.+.+.|+|||++++-
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 3322 1 001357899999988654 567889999999998875
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=108.98 Aligned_cols=107 Identities=16% Similarity=0.023 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 126 (206)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+ ..++.++.+|..+.. .+ + +
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~--~-~ 319 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEKF--A-E 319 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccchh--c-c
Confidence 6788999999999999999999877566799999999999999999998733 346899999943322 12 2 6
Q ss_pred CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|++++++ ..+++.+.+.|+|||.++.++.+..
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 78999998763 1356888999999999998877653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=108.43 Aligned_cols=110 Identities=21% Similarity=0.175 Sum_probs=87.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++... +..++.++.+|...... .....+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-----g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-----GLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-----CCCeEEEEeCChhhcccccccccc
Confidence 678899999999999999999988766679999999999999999999873 34578999988432211 001356
Q ss_pred CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||.|++++++ ..+++.+.+.|+|||+++.++++..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 88999998653 2356888999999999998887754
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=96.67 Aligned_cols=118 Identities=27% Similarity=0.307 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA- 112 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~- 112 (206)
|.....+.-++. ..++++|||||++.|+.+..++.....+++++++|++++..+.|++++++.+.+ .++.++.
T Consensus 45 ~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~ 118 (219)
T COG4122 45 PETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLG 118 (219)
T ss_pred hhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEec
Confidence 444444444444 678899999999999999999998855889999999999999999999985543 4588888
Q ss_pred cccccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEe
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|+.+...- ...++||+|+++..-. .+++.+.++|+|||.+++--
T Consensus 119 gdal~~l~~-~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 119 GDALDVLSR-LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred CcHHHHHHh-ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 574332220 2578899999998864 47788999999999998763
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=102.95 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ . ++++...|... .. .+++||
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~-~~---~~~~fD 186 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINS-AS---IQEEYD 186 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhc-cc---ccCCcc
Confidence 3459999999999999999874 3599999999999999998887632 2 57777777322 22 256789
Q ss_pred EEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 130 VIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 130 ~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|++...++ .+++++.++|+|||++++..
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887653 36789999999999977654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=98.10 Aligned_cols=102 Identities=25% Similarity=0.293 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++...+ .++.++.+|+.. .+ ++++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~--~~--~~~~ 101 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWAR--AV--EFRP 101 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhh--hc--cCCC
Confidence 567889999999999999988864 2 2489999999999999999887522 247788888432 23 5678
Q ss_pred eeEEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+++++. +.+++++.+.|++||++++.....
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 8999998542 235677889999999999865554
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=104.09 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=83.1
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
+.+++.+. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++. ..+++..|...
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFS 256 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccc
Confidence 44555554 2334689999999999999998875 667999999999999999999887432 24566666321
Q ss_pred ccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. ..+.||+|+++++++ .+++.+.+.|+|||.+++....
T Consensus 257 ---~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 257 ---D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ---c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 1 246789999998874 3567889999999999887654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=94.05 Aligned_cols=100 Identities=31% Similarity=0.405 Sum_probs=74.2
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
+.+.....++.+|||+|||+|.++..+.+.. . +++++|+++.+++. . ++.....+ ......
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~------~---------~~~~~~~~-~~~~~~ 74 (161)
T PF13489_consen 14 ERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK------R---------NVVFDNFD-AQDPPF 74 (161)
T ss_dssp HHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH------T---------TSEEEEEE-CHTHHC
T ss_pred HHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh------h---------hhhhhhhh-hhhhhc
Confidence 3333335778999999999999999996643 3 99999999999888 1 12222222 112223
Q ss_pred CCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++++||+|++...+++ +++.+.++|+|||.+++..+...
T Consensus 75 --~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 --PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp --HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred --cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 5778899999988765 67899999999999999988753
|
... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=109.02 Aligned_cols=146 Identities=19% Similarity=0.142 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.|++++..++ ..+++++
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~ 350 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFY 350 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEE
Confidence 33344444433322 4577899999999999999998765 399999999999999999987633 3579999
Q ss_pred Eccccccc---ccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEe
Q psy10573 112 AYFWLRHL---LLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 185 (206)
Q Consensus 112 ~~d~~~~~---~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (206)
.+|+.+.. ++ .+++||+|+++++.. ..++.+.+ ++|++++++++...+ ..+.+......+|.. ..+.
T Consensus 351 ~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t---laRDl~~L~~~gY~l-~~i~ 423 (443)
T PRK13168 351 HANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT---LARDAGVLVEAGYRL-KRAG 423 (443)
T ss_pred EeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHH---hhccHHHHhhCCcEE-EEEE
Confidence 99954321 23 456789999998853 44444444 589999998886654 233333333455888 8888
Q ss_pred eEEeeeccc
Q psy10573 186 GVRTNPLYR 194 (206)
Q Consensus 186 ~~~~~~~~~ 194 (206)
...+.|.+.
T Consensus 424 ~~DmFP~T~ 432 (443)
T PRK13168 424 MLDMFPHTG 432 (443)
T ss_pred EeccCCCCC
Confidence 887777664
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-14 Score=95.28 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=59.0
Q ss_pred EEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEec
Q psy10573 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSC 134 (206)
Q Consensus 55 LDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~ 134 (206)
||+|||+|.++..+.... +..+++++|+|+.+++.+++++.... ..+...+..+..+.... ...++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDY-DPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C-CC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhc-ccccccceehhh
Confidence 799999999999999887 67799999999999998888887622 22334444331221111 123588999998
Q ss_pred CChHH------HHHHHHhcccCCcEE
Q psy10573 135 WTKEE------YNSWLLDQLVPGGRM 154 (206)
Q Consensus 135 ~~~~~------~~~~~~~~L~~gG~l 154 (206)
..+++ +++++.+.|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 88765 568999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=99.90 Aligned_cols=110 Identities=26% Similarity=0.299 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+++.+.....++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++..++.. .++.+..++
T Consensus 104 ~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~ 177 (250)
T PRK00517 104 PTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGD 177 (250)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCC
Confidence 3455556666555678899999999999998877654 33 36999999999999999998763321 223332222
Q ss_pred cccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+||+|+++...+ .+++++.+.|+|||+++++....
T Consensus 178 -----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 178 -----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred -----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 1459999876544 46688999999999999985543
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=94.27 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccC-----CCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 36 IHAQMLELLKDKI-----KPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 36 ~~~~~~~~l~~~~-----~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
...+++++|.+.+ ...+ +|||+|||+|.+...|++... .+..+|+|.|+.+++.|++.++..+.+ ..|+
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~ 121 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFS----NEIR 121 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCC----ccee
Confidence 4556666665443 3333 999999999999999987653 347999999999999999988874321 2399
Q ss_pred EEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
|.+.|.... .+ ..+.||+|.--..+ .-++..+.+.|+|||+++++.++.+.
T Consensus 122 f~q~DI~~~-~~--~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 122 FQQLDITDP-DF--LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred EEEeeccCC-cc--cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 999994332 23 44555666443322 12668889999999999999998773
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=98.38 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+.....++.+|||+|||+|..+..+++.. ..+++|+|+|+++++.++++. .++.+| ...
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d-~~~ 103 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-------------DKVVGS-FEA 103 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-------------ceEEec-hhh
Confidence 3444444334567899999999999999998764 349999999999999997531 245667 444
Q ss_pred cccCCCCCCeeEEEecCChHH------HHHHHHhcccCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPG 151 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~g 151 (206)
.++ ++++||+|++...+++ .++++.++|+|.
T Consensus 104 lp~--~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 104 LPF--RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCC--CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 667 8999999999887753 678999999994
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-12 Score=97.12 Aligned_cols=115 Identities=23% Similarity=0.366 Sum_probs=87.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+...+. ..++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+ ...++.++.+|..
T Consensus 40 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~ 113 (239)
T PRK00216 40 RRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAE 113 (239)
T ss_pred HHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEecccc
Confidence 344455554 4577899999999999999998877435799999999999999999876421 1246888888843
Q ss_pred cccccCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..++ +.++||+|++...+ ..+++.+.+.|+|||.+++....
T Consensus 114 -~~~~--~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 114 -ALPF--PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred -cCCC--CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 2334 56789999886554 34778999999999999876543
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=96.41 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. .+.++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.|++++. ++.++.+|..
T Consensus 31 ~~~~~~~l~-~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~ 98 (204)
T TIGR03587 31 LAMFARALN-RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLF 98 (204)
T ss_pred HHHHHHHHH-hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeecc
Confidence 333444443 35678899999999999999998765 55699999999999999987642 4667777743
Q ss_pred cccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
+ ++ ++++||+|+++..+++ .++++.+++ ++.+++...
T Consensus 99 ~--~~--~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 99 D--PF--KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred C--CC--CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3 56 7889999999888754 335555554 445555543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-12 Score=100.13 Aligned_cols=103 Identities=28% Similarity=0.386 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. ....++.++.+|+.. ++ ++++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~-----~~~~~i~~~~~d~~~--~~--~~~~ 175 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH-----GLGARVEFLQGDWFE--PL--PGGR 175 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-----CCCCcEEEEEccccC--cC--CCCc
Confidence 4567899999999999999999876 667999999999999999999872 123578999988422 22 3567
Q ss_pred eeEEEecCCh--------------------------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTK--------------------------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~--------------------------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+++++. ..+++.+.+.|+|||.+++....
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 8999997653 12445667999999999987643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-12 Score=98.79 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=89.6
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccC---CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI---KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a 91 (206)
...|....+..+.+..+..+. ...+++.+...+ .+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.+
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~-Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRR-TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCA 126 (251)
T ss_pred cCeEcCeEEEECCCCcCCCcc-HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 344444444444444443332 233333322212 234589999999999999998765 556899999999999999
Q ss_pred HHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------------------------------H
Q psy10573 92 IKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------------------------------E 139 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------------------------------~ 139 (206)
++++..+ +.+++.+|+.+..+-. ..++||+|++|+++. .
T Consensus 127 ~~N~~~~--------~~~~~~~D~~~~l~~~-~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 127 RRNLADA--------GGTVHEGDLYDALPTA-LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred HHHHHHc--------CCEEEEeechhhcchh-cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 9998762 2467888843322100 135689999998641 2
Q ss_pred HHHHHHhcccCCcEEEEEecCC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++.+.+.|+|||++++.....
T Consensus 198 i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 198 VAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred HHHHHHHhcCCCCEEEEEECcc
Confidence 4456678999999999887644
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=101.48 Aligned_cols=110 Identities=22% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+||++|||+|..+..+++.. ...+|+++|+++.+++.+++.+...+......++++++.+|....... .+++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcc
Confidence 456899999999999999998753 345899999999999999998865221111357899999994433332 46678
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++... ..+++.+.+.|+|||++++...+.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 999997531 335688999999999999875543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=97.00 Aligned_cols=119 Identities=25% Similarity=0.307 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
......++..+.. .....+||||||++|+.+..+++.++++++++++|++++..+.|++++...+.. .+++++.+
T Consensus 30 ~~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~g 104 (205)
T PF01596_consen 30 SPETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES
T ss_pred CHHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEe
Confidence 3344455555543 456789999999999999999998866789999999999999999999874432 58999999
Q ss_pred ccccccc-c--CCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 114 FWLRHLL-L--TNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 114 d~~~~~~-~--~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
|..+..+ + .-+.+.||+|+++..-.. +++.+.+.|++||.+++-
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 9433222 1 012467899999988654 557788999999999876
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-12 Score=93.26 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. .-++.++||+|||.|+.+.+|++.. ..|+++|.|+..++.+++.....+ -.++....|.
T Consensus 19 hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl- 86 (192)
T PF03848_consen 19 HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADL- 86 (192)
T ss_dssp -HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BG-
T ss_pred cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecc-
Confidence 344555554 4457799999999999999999854 499999999999999888776533 2478888883
Q ss_pred cccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+...+ ++.||+|++...+ +.+++.+...++|||++++.+.
T Consensus 87 ~~~~~---~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 87 NDFDF---PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CCBS----TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhccc---cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 32333 3678999875443 3467888999999999888654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=100.39 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=76.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC-CCceEEEEcccccccccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD-QGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
|.+|||+|||.|-++..|++.. .+|+|||+++.+++.|+++.......... .-++.+...+... -.+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~------~~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG------LTGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh------cccccc
Confidence 4789999999999999999865 39999999999999999994432211000 0124454444221 123369
Q ss_pred EEEecCChHHH------HHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKEEY------NSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~~~------~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|+|...++|+ ++.+.+.|+|+|++++++.+..
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999888774 5778899999999999988765
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-12 Score=101.83 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=74.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|.++..++... +. .|+|+|+|+.++..++....... ...++.++.+|. ...++ +++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~-~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~-e~lp~---~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AK-LVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGI-EQLPA---LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CC-EEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCH-HHCCC---cCCc
Confidence 457899999999999999998764 33 69999999988765433221100 124788988883 33332 5678
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|++...+++ +++++.+.|+|||.+++.+.
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99999877643 67899999999999998754
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=107.25 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=96.1
Q ss_pred cCccccccccccCccccCcHHHHHHH---HHHhhcc----------------------CCCCCeEEEEcccCchHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQM---LELLKDK----------------------IKPGARILDIGSGSGYLTACLA 69 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~----------------------~~~~~~vLDlG~G~G~~~~~l~ 69 (206)
...|.........+-.|++|+.-..+ ++.+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 55566666666666777777643333 2222100 1134689999999999999998
Q ss_pred HHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh------------
Q psy10573 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK------------ 137 (206)
Q Consensus 70 ~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~------------ 137 (206)
... +..+++++|+|+.+++.|++++...+. ..++.++.+|+.+ .+ +.++||+|++|++.
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~--~~--~~~~fDlIvsNPPYi~~~~~~~l~~~ 228 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFE--NI--EKQKFDFIVSNPPYISHSEKSEMAIE 228 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhh--hC--cCCCccEEEECCCCCCchhhhhcCch
Confidence 776 667999999999999999999876332 2468899988432 12 45678999998652
Q ss_pred --------------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 138 --------------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 138 --------------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+++.+.+.|+|||.+++.+..
T Consensus 229 v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 229 TINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred hhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 11346677899999999987543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=100.59 Aligned_cols=103 Identities=18% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..++... +. .++|+|+|+.++..++..-... ....++.+...+. ...+. .++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g-~~-~v~GiDpS~~ml~q~~~~~~~~----~~~~~v~~~~~~i-e~lp~---~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG-AK-SLVGIDPTVLFLCQFEAVRKLL----DNDKRAILEPLGI-EQLHE---LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC-CC-EEEEEcCCHHHHHHHHHHHHHh----ccCCCeEEEECCH-HHCCC---CCC
Confidence 3567899999999999998887653 32 7999999999887643221110 0124677777773 22222 247
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...+++ .++++.++|+|||.+++.+..
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 899999887754 678999999999999987643
|
Known examples to date are restricted to the proteobacteria. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=93.84 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
-.++||+|||.|.++..|+.... +++++|+++.+++.|++++.. .++++|+..|.+.. . |+++||+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~--~--P~~~FDL 109 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEF--W--PEGRFDL 109 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT-------SS-EEE
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCC--C--CCCCeeE
Confidence 37899999999999999998774 999999999999999999875 46899999995432 3 7889999
Q ss_pred EEecCCh---------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 131 IQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 131 i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|++...+ ..++..+...|+|||.+++....
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9987654 33667888999999999997664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-12 Score=104.81 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+ . +++++.+|....... .+.++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~~~~~-~~~~~ 313 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARDPAQW-WDGQP 313 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCcccchhh-cccCC
Confidence 6788999999999999999999876 44699999999999999999998733 2 367888884322111 14567
Q ss_pred eeEEEecCChH----------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE----------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++. .+++.+.+.|+|||+++.++++..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 89999877631 366788999999999998887543
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=95.97 Aligned_cols=139 Identities=21% Similarity=0.215 Sum_probs=99.0
Q ss_pred cccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCC--CCeEEEEcccCchHHHHHHHHhCCCceEEEEe
Q psy10573 5 DRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82 (206)
Q Consensus 5 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD 82 (206)
|.+-|+.+.....|..++.... .+..+.+..++.+. +++ ..-|||||||+|-.+..+.... -..+|+|
T Consensus 10 PpelfYnd~eA~kYt~nsri~~-----IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvD 79 (270)
T KOG1541|consen 10 PPELFYNDTEAPKYTQNSRIVL-----IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVD 79 (270)
T ss_pred Ccceeechhhhhhccccceeee-----ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeec
Confidence 3444444444555555554432 34556677777776 555 5679999999999988886532 2778999
Q ss_pred CCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-----------------HHHHHHH
Q psy10573 83 HVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-----------------EYNSWLL 145 (206)
Q Consensus 83 ~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-----------------~~~~~~~ 145 (206)
+|+.|++.|.+..- .-+++.+|..+..+| ++|+||-+|+..++. .++..++
T Consensus 80 iSpsML~~a~~~e~----------egdlil~DMG~Glpf--rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy 147 (270)
T KOG1541|consen 80 ISPSMLEQAVEREL----------EGDLILCDMGEGLPF--RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLY 147 (270)
T ss_pred CCHHHHHHHHHhhh----------hcCeeeeecCCCCCC--CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhh
Confidence 99999999987321 236788887778888 999999988765532 1456789
Q ss_pred hcccCCcEEEEEecCCCCCe
Q psy10573 146 DQLVPGGRMVMPVGEPFKGQ 165 (206)
Q Consensus 146 ~~L~~gG~l~~~~~~~~~~~ 165 (206)
.+|+.|++.++..+..+..+
T Consensus 148 ~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 148 SCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred hhhccCceeEEEecccchHH
Confidence 99999999999988766433
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=92.19 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=83.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. ..++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++...... ..++.++..|..+
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~ 84 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR---NNGVEVIRSDLFE 84 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEeccccc
Confidence 33444444 367789999999999999999876 359999999999999999988763321 1127888888433
Q ss_pred ccccCCCCCCeeEEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+ ++++||+|++++++ ..+++++.++|+|||.+++...+.
T Consensus 85 --~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 85 --PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred --cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 23 44578999987653 235688899999999998876654
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=104.94 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++...+ ..+++++.+|.... . ++++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~--~--~~~~ 318 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSF--S--PEEQ 318 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCccccc--c--cCCC
Confidence 5788999999999999999998877556799999999999999999998733 34788998884321 1 3567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++++++ ..++..+.+.|+|||+++.++++..
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 8999987553 1267888999999999999998865
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=94.21 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=85.4
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.. ..+++++.+|..
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~- 98 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAE- 98 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchh-
Confidence 33444443 45789999999999999999988774336899999999999999887641 246888888843
Q ss_pred ccccCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..++ +.++||+|++...+ ..+++.+.+.|+|||++++.....
T Consensus 99 ~~~~--~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 99 ALPF--EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred cCCC--CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 3344 66789999886544 447789999999999999876543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=99.92 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+.+.+.+ .++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++..++ ..+++++
T Consensus 155 ~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~ 226 (315)
T PRK03522 155 PAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQFQ 226 (315)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEE
Confidence 444455544433222 356899999999999999998743 499999999999999999998733 3579999
Q ss_pred EcccccccccCCCCCCeeEEEecCChHHH---HHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEE
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKEEY---NSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVR 188 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~~~---~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (206)
.+|..+.... ..+.||+|+++++...+ .......++|++++++++...+-...+..+ .+|.. ..+....
T Consensus 227 ~~D~~~~~~~--~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~-~~~~~~D 298 (315)
T PRK03522 227 ALDSTQFATA--QGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRI-ERVQLFD 298 (315)
T ss_pred EcCHHHHHHh--cCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEE-EEEEEec
Confidence 9994332221 23468999999875432 223344467888888887776543333333 35777 7777777
Q ss_pred eeeccc
Q psy10573 189 TNPLYR 194 (206)
Q Consensus 189 ~~~~~~ 194 (206)
+.|.+.
T Consensus 299 mFP~T~ 304 (315)
T PRK03522 299 MFPHTA 304 (315)
T ss_pred cCCCCC
Confidence 777654
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=97.34 Aligned_cols=135 Identities=23% Similarity=0.257 Sum_probs=93.3
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccCCCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
..|.........+..+++|.....+-..+. ...... +|||+|||||..+..++... +...|+++|+|+.+++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 344444444555556666654444333221 122222 79999999999999999877 677999999999999999999
Q ss_pred hhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHHH
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNSW 143 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~~ 143 (206)
+..++. .++.++..|+.+. . .++||+|++|++. ..++..
T Consensus 154 a~~~~l-----~~~~~~~~dlf~~--~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~ 223 (280)
T COG2890 154 AERNGL-----VRVLVVQSDLFEP--L---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE 223 (280)
T ss_pred HHHcCC-----ccEEEEeeecccc--c---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh
Confidence 998442 4566666674321 1 2367999999873 124467
Q ss_pred HHhcccCCcEEEEEecCCC
Q psy10573 144 LLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 144 ~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+.|+|||.+++......
T Consensus 224 a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 224 APDILKPGGVLILEIGLTQ 242 (280)
T ss_pred hHHHcCCCcEEEEEECCCc
Confidence 7889999999988877544
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-11 Score=89.23 Aligned_cols=120 Identities=20% Similarity=0.115 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..-.+.+.+.+.+.. ..++.+|||+|||+|.++..++... . .+++++|.++.+++.+++++...+ ..++.++
T Consensus 36 ~~d~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~ 107 (199)
T PRK10909 36 TTDRVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLK-----AGNARVV 107 (199)
T ss_pred CCHHHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 334455556666542 2457899999999999998755443 2 499999999999999999988733 3478999
Q ss_pred EcccccccccCCCCCCeeEEEecCChH-----HHHHHHHh--cccCCcEEEEEecCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLLD--QLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~--~L~~gG~l~~~~~~~ 161 (206)
.+|+.+.... ..+.||+|++++++. .+++.+.. .|+|++++++.....
T Consensus 108 ~~D~~~~l~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 108 NTNALSFLAQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EchHHHHHhh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 9995432221 234689999999942 23344433 368899999887664
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=104.91 Aligned_cols=108 Identities=23% Similarity=0.336 Sum_probs=82.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++... ..++++++.+|...
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEecccc
Confidence 34444443 3466799999999999999998864 389999999999988765321 12578899988432
Q ss_pred -ccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 118 -HLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 118 -~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..++ ++++||+|+++..++ .+++++.+.|+|||++++.-.
T Consensus 95 ~~~~~--~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 95 PDLNI--SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred cccCC--CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2345 788999999988765 366889999999999988643
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=99.38 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.....+.+...+.++.+|||+|||+|..+..+++.+....+++++|+|+++++.+++++.... ...++.++.+|
T Consensus 48 ~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD 123 (301)
T TIGR03438 48 AILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICAD 123 (301)
T ss_pred HHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEc
Confidence 34444444444446677899999999999999999876324589999999999999999876521 11246778888
Q ss_pred cccccccCCCCC----CeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 115 WLRHLLLTNPHG----STRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 115 ~~~~~~~~~~~~----~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+..++ +.. ...+++++..+ ..+++++.+.|+|||.+++.+.
T Consensus 124 ~~~~~~~--~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 124 FTQPLAL--PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccchhhh--hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4432222 221 22344433332 2367899999999999987654
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=97.77 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCCeEEEEcccCch----HHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhcc----Cc----------------
Q psy10573 49 KPGARILDIGSGSGY----LTACLAYMAG----PEGRVYGVEHVMELAESSIKNIDKG----NS---------------- 100 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~----~~~~l~~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~----~~---------------- 100 (206)
.++.+|+|+|||+|. ++..+++... ...+|+|+|+|+.+++.|++..-.. ..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 4555555442 2468999999999999999864210 00
Q ss_pred --cccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 101 --ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 101 --~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
......+++|...|..+ .++ +.++||+|+|...+. .+++++.+.|+|||.+++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~-~~~--~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLA-ESP--PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCC-CCC--ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00001367888888432 333 577899999977653 36788999999999998753
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=98.84 Aligned_cols=111 Identities=17% Similarity=0.080 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.....+||++|||.|..++.+++.. +..+|+++|+++++++.|++.. ...+......++++++.+|......- .+
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--PS 224 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--cC
Confidence 3556799999999999998888754 4569999999999999999732 21111112357899999994443333 45
Q ss_pred CCeeEEEecCCh-----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 126 GSTRVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 126 ~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++||+|+++..- ..+++.+.+.|+|||++++...++
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 678999998542 226688999999999998875544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=92.04 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-------c
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-------L 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~ 120 (206)
+.++.+|||+|||+|.++..+++...+.++++++|+++.+ . ..++.++.+|..+.. .
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 6789999999999999999998876556689999999854 1 135777877733211 1
Q ss_pred cCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 121 LTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+ +.++||+|+++... ..+++.+.+.|+|||++++..+..
T Consensus 94 ~--~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 94 V--GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred h--CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 3 56678999986421 346788899999999999976554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=96.90 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...+. ..+++++.+|..+ .++ +.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~-~~~--~~-- 215 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYK-ESY--PE-- 215 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccC-CCC--CC--
Confidence 5677899999999999999999887 7779999997 7899999988876432 2579999999432 223 33
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|+|++...++ .+++++.+.|+|||++++.-.
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 49887665443 367899999999999998854
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=91.79 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=77.6
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE-EEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~~~D~ 130 (206)
..|||+|||+|..-.+.- .. |.++|+.+|.++.+-+.+.+.+.++. ..++. |+.++ .+..+ .++++++|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~-~~-p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~-ge~l~-~l~d~s~Dt 148 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP-WK-PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVAD-GENLP-QLADGSYDT 148 (252)
T ss_pred cceEEecccCCCCccccc-CC-CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeec-hhcCc-ccccCCeee
Confidence 568999999998865543 22 67899999999999999999998843 35666 88888 34333 238999999
Q ss_pred EEecCCh------HHHHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWTK------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|++...+ ...++++.++|+|||++++.--
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9886553 4578999999999999988643
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=102.07 Aligned_cols=116 Identities=13% Similarity=-0.004 Sum_probs=85.5
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+...+. ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++...+.. ..+.+..+|....
T Consensus 229 ~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~ 301 (426)
T TIGR00563 229 WVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGP 301 (426)
T ss_pred HHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeccccccc
Confidence 3444454 67889999999999999999998774 679999999999999999999874321 1334455552211
Q ss_pred cccCCCCCCeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..+ .+.++||.|++++++ ..+++.+.+.|+|||.++.++++..
T Consensus 302 ~~~-~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 302 SQW-AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccc-ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 145678999987542 2366788999999999999988764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=93.52 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.....+...+. ..+..+|||||+++|+.+..++...+++++++++|.+++..+.|++++...+. ..+|+++.+
T Consensus 65 ~~~g~lL~~l~~--~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G 138 (247)
T PLN02589 65 ADEGQFLNMLLK--LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHH--HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEec
Confidence 444444433333 56678999999999999999998877788999999999999999999987443 368999999
Q ss_pred ccccccccCC----CCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 114 FWLRHLLLTN----PHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 114 d~~~~~~~~~----~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
+..+..+--. ..++||+|+++..-.. +++.+.+.|++||.|++-
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9433222100 1367899999988654 557888999999998864
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=91.83 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc-------cccCCCceEEEEccccccccc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~i~~~~~d~~~~~~~ 121 (206)
.++.+|||+|||.|..+..++.+ +..|+|+|+|+.+++.+.+....... ......+++++.+|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 56789999999999999999974 34999999999999986432211000 000124688999994332211
Q ss_pred CCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+.||.|+....+ ..+++.+.++|+|||.+++.+..
T Consensus 110 --~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 110 --DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred --cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 13457888775544 23678999999999987776554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=93.11 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=78.6
Q ss_pred CCCCeEEEEcccCchHH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc-cCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~-~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.++.+|+|+|||.|.++ ..++....++++++++|+++++++.|++.+.. .+ ...+++|+.+|..+. .. ..+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~-~~--~l~ 194 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDV-TE--SLK 194 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhc-cc--ccC
Confidence 37799999999987554 44444445888999999999999999999853 22 135799999994432 11 235
Q ss_pred CeeEEEecCC-------hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWT-------KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~-------~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.||+|++... -..+++.+.+.|+|||.+++-...
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 6899999832 234789999999999999988753
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-11 Score=88.08 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=78.3
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. ..+++++.+|+.+
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~ 70 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALK 70 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhc
Confidence 44555554 5778899999999999999998763 4999999999999999988753 2478999999432
Q ss_pred ccccCCCCCCeeEEEecCChH---HHHHHHHhc--ccCCcEEEEEec
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQ--LVPGGRMVMPVG 159 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~--L~~gG~l~~~~~ 159 (206)
.++ ++.++|.|+++.+.+ .++.++.+. +.++|.+++...
T Consensus 71 -~~~--~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 71 -FDL--PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -CCc--cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 233 455689999998875 344444433 236677766543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=94.28 Aligned_cols=109 Identities=20% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+..... ....++++++.+|....... ..++|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~--~~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLAD--TENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHh--CCCCc
Confidence 345699999999999998887754 345899999999999999998754221 12346788888884332222 24577
Q ss_pred eEEEecCC----------hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWT----------KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~----------~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++.. ...+++.+.+.|+|||++++...+.
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 99999765 2346688999999999999875543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-11 Score=92.08 Aligned_cols=99 Identities=18% Similarity=0.044 Sum_probs=70.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.++.+|||+|||+|.++..+++.. ++..+++|+|+++.+++.++++... .++.+...+ ....+. ++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~-~~~l~~--~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAV-SDELVA--EG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEe-cccccc--cC
Confidence 567899999999999998887643 3456999999999999999887543 345555554 222333 56
Q ss_pred CCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++||+|+++..+++ +++++.++++ |.+++....
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 78999999887654 4567777776 445444433
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-11 Score=91.15 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. ++++++|+++..++.+++++.... .+++++..+....... ..+.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~ 114 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAE--HPGQ 114 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhh--cCCC
Confidence 4568899999999999998887642 489999999999999998876522 2467777763322212 4567
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++.+.+.|+|||.+++..+.
T Consensus 115 fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 89999866543 4678999999999999988654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=101.29 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=103.7
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~ 101 (206)
+..+.++ ..+...+.+.+.+...+ .++.+|||+|||+|.++..++... .+++++|+++.+++.+++++..++
T Consensus 205 ~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~-- 279 (374)
T TIGR02085 205 IRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG-- 279 (374)
T ss_pred ECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC--
Confidence 3333444 33455555555444322 356899999999999999998643 489999999999999999998743
Q ss_pred ccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCc
Q psy10573 102 LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGY 177 (206)
Q Consensus 102 ~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (206)
..+++++.+|..+...- ..++||+|+++++... +++.+. .++|++++++++...+-...+..+ .+
T Consensus 280 ---~~~~~~~~~d~~~~~~~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-----~g 348 (374)
T TIGR02085 280 ---LDNLSFAALDSAKFATA--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-----SG 348 (374)
T ss_pred ---CCcEEEEECCHHHHHHh--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-----cC
Confidence 34799999994332211 1234799999988543 334443 468999999888765533333333 35
Q ss_pred eEEEEEEeeEEeeeccc
Q psy10573 178 TIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (206)
|.. +.+....+.|.+.
T Consensus 349 y~l-~~~~~~DmFPqT~ 364 (374)
T TIGR02085 349 YQI-ERVQLFDMFPHTS 364 (374)
T ss_pred ceE-EEEEEeccCCCCC
Confidence 777 7777777777654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=97.23 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
..++.....+.+... |++|||+.|-||.++..++.... .++++||.|..+++.|+++++.++. ...++.|+.+|
T Consensus 203 lDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~D 276 (393)
T COG1092 203 LDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGD 276 (393)
T ss_pred HHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCC---Cccceeeehhh
Confidence 345555555655456 99999999999999999986432 3999999999999999999998663 24568999999
Q ss_pred ccccccc-CCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLL-TNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~-~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+.... .-...+||+|+++++- ..+...+.++|+|||++++++.+..
T Consensus 277 vf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 277 VFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 4332221 1134588999999883 2366889999999999999988765
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=94.11 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+||++|||.|..+..+++.. +..+++.+|+++.+++.+++.+..... ....++++++.+|...... ..++++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~-~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLK-NAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHh-hccCCCC
Confidence 567899999999999999998753 345899999999999999998865221 1335789999999432221 1135678
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++... ..+++.+.+.|+|||+++....+
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 999997543 23668899999999999875544
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-11 Score=97.91 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 126 (206)
..++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..++.+ ..+++++.+|+.+.. .+....+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHHHHhcCC
Confidence 346889999999999998876542 2348999999999999999999874421 137899999943321 1111245
Q ss_pred CeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|+++++. ..+...+.++|+|||+++.++.+..
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 78999999774 1234567899999999998776543
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=90.13 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=100.5
Q ss_pred cCccccccccccCccccCcHHH---HHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHI---HAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~ 90 (206)
...|.+-......+-.|+.|+. +.++++.+.+. ...+..++|+|||+|..+..++..+ +.+.++++|.|+.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHH
Confidence 4455555555555777777765 44444544421 1345589999999999999999988 57899999999999999
Q ss_pred HHHhhhccCccccCCCceEEEEc----ccccccccCCCCCCeeEEEecCCh-----------------------------
Q psy10573 91 SIKNIDKGNSELLDQGRVQFVAY----FWLRHLLLTNPHGSTRVIQSCWTK----------------------------- 137 (206)
Q Consensus 91 a~~~~~~~~~~~~~~~~i~~~~~----d~~~~~~~~~~~~~~D~i~~~~~~----------------------------- 137 (206)
|.+|+.+..+. .++.++.. |+....+. ..+.+|++++|++.
T Consensus 188 a~eN~qr~~l~----g~i~v~~~~me~d~~~~~~l--~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~ 261 (328)
T KOG2904|consen 188 AKENAQRLKLS----GRIEVIHNIMESDASDEHPL--LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGY 261 (328)
T ss_pred HHHHHHHHhhc----CceEEEeccccccccccccc--ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchh
Confidence 99999885432 45666644 33333333 67889999999883
Q ss_pred ---HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 138 ---EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 138 ---~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++..-..++|+|||.+.+.....
T Consensus 262 ~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 262 DNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred HHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 224456688999999999887743
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=102.92 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+.+.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.|++++..++ ..+++++
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~ 345 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNG-----IANVEFL 345 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhC-----CCceEEE
Confidence 44444444444332 45678999999999999999987642 89999999999999999998733 4589999
Q ss_pred Ecccccccc-cCCCCCCeeEEEecCCh----HHHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEee
Q psy10573 112 AYFWLRHLL-LTNPHGSTRVIQSCWTK----EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRG 186 (206)
Q Consensus 112 ~~d~~~~~~-~~~~~~~~D~i~~~~~~----~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (206)
.+|+.+..+ +...+++||+|+++++- ..+++.+. .++|++++++++...+ ..+.+......+|.. ..+..
T Consensus 346 ~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~t---lard~~~l~~~gy~~-~~~~~ 420 (431)
T TIGR00479 346 AGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPAT---LARDLEFLCKEGYGI-TWVQP 420 (431)
T ss_pred eCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHH---HHHHHHHHHHCCeeE-EEEEE
Confidence 999433211 10134578999998874 34555444 4789888877755432 111222222345776 67777
Q ss_pred EEeeecc
Q psy10573 187 VRTNPLY 193 (206)
Q Consensus 187 ~~~~~~~ 193 (206)
..+.|.+
T Consensus 421 ~DmFP~T 427 (431)
T TIGR00479 421 VDMFPHT 427 (431)
T ss_pred eccCCCC
Confidence 6666654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=87.70 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 36 IHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 36 ~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
....+.+.+... ...+.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++...
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 100 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCT 100 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeC
Confidence 344455554421 1347899999999999999887643 379999999999999999887522 225788877
Q ss_pred ccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|..+.... ..++||+|++...++ .+++.+.+.|++||.+++....
T Consensus 101 d~~~~~~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 101 SVEDLAEK--GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CHHHhhcC--CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 73322111 236789999876654 3678899999999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=89.20 Aligned_cols=106 Identities=24% Similarity=0.269 Sum_probs=82.1
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
...+||||||.|.++..++... |...++|+|+....+..+.+++.. .+..|+.++++|+.......++++++|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~-----~~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK-----RGLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH-----HTTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh-----hcccceEEEEccHHHHHhhcccCCchhe
Confidence 3489999999999999999887 788999999999999999888887 3457999999994443332247799999
Q ss_pred EEecCChH--------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 131 IQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 131 i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+++.+-+ .+++.+.+.|+|||.|.+.+-...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 99987753 377899999999999998887654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=88.47 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=79.9
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.|++++.+.+...+... ...+.+|||+|||+|.++..+++... +..+++++|+++.+++.|+++.
T Consensus 30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------- 96 (241)
T PHA03412 30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------- 96 (241)
T ss_pred CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------
Confidence 57777777776665422 12367999999999999999887531 3458999999999999999764
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH------------------HHHHHHHhcccCCcEEEEE
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE------------------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~------------------~~~~~~~~~L~~gG~l~~~ 157 (206)
.++.++.+|+.. ..+ +++||+|++|+++. .+++.+.+++++|+ +|++
T Consensus 97 -~~~~~~~~D~~~-~~~---~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP 161 (241)
T PHA03412 97 -PEATWINADALT-TEF---DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIP 161 (241)
T ss_pred -cCCEEEEcchhc-ccc---cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeC
Confidence 247888888432 112 45789999998852 14566677666666 4444
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=76.34 Aligned_cols=96 Identities=28% Similarity=0.240 Sum_probs=73.7
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+|||+|..+..++. . ...+++++|+++..+..+++.... ....++.++..|..+.... ..+++|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAA-----LLADNVEVLKGDAEELPPE--ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhc-----ccccceEEEEcChhhhccc--cCCceEEEE
Confidence 489999999999998887 2 456999999999999998853332 2235788888884433322 456789999
Q ss_pred ecCCh-------HHHHHHHHhcccCCcEEEEE
Q psy10573 133 SCWTK-------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 133 ~~~~~-------~~~~~~~~~~L~~gG~l~~~ 157 (206)
++.++ ..+++.+.+.++++|.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98876 34668889999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=103.63 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=82.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..++.+ ..+++++.+|+.+...- ..++|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~--~~~~f 609 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKE--AREQF 609 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHH--cCCCc
Confidence 457899999999999999998742 237999999999999999999875421 14799999994332211 14568
Q ss_pred eEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++++. ..++..+.++|+|||.+++++....
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999998873 2356778899999999988776543
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=87.62 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=73.6
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+.....++.+|||+|||+|.++..+++. ..+++|+|+++.++..+++++..... ..++.+..+|+..
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~- 115 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLS- 115 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhh-
Confidence 344444321346789999999999999999864 34899999999999999998875221 1368888888432
Q ss_pred cccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEE
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~ 156 (206)
. + ++||+|++...+.+ ++.++.+.+++++++.+
T Consensus 116 --~--~-~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 116 --L--C-GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --C--C-CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 2 66799988665532 45667777776554443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=100.47 Aligned_cols=110 Identities=22% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--hhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN--IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+++.+|||+|||+|..+..+++.. +..+++++|+++++++.++++ +...+....+.++++++.+|..+.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--CCC
Confidence 567899999999999999988642 335999999999999999984 322111112347899999994433222 346
Q ss_pred CeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+||+|+++...+ .+.+.+.+.|+|||++++...++
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 789999986532 25678899999999999876543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-10 Score=102.11 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=100.4
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCC---CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK---PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a 91 (206)
...|....+...-+-.+++|+....+-. +..... ++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|
T Consensus 81 ~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 81 FRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred eEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 4455566666666677777765444333 442211 24689999999999999999876 556999999999999999
Q ss_pred HHhhhccCccc-----------cCCCceEEEEcccccccccCCCCCCeeEEEecCCh-----------------------
Q psy10573 92 IKNIDKGNSEL-----------LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK----------------------- 137 (206)
Q Consensus 92 ~~~~~~~~~~~-----------~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~----------------------- 137 (206)
++|+..+..+. ....+++++.+|+.+...- ....||+|++|++.
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 99998743210 1124799999995432211 12368999998772
Q ss_pred ---------------------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 138 ---------------------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 138 ---------------------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
..++..+.+.|+|||.+++.+....+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~ 283 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG 283 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 01335567799999999998887653
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=86.15 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-c------cccCCCceEEEEcccccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-S------ELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~------~~~~~~~i~~~~~d~~~~~~ 120 (206)
..++.+|||+|||.|..+..|+.+ +.+|+|+|+|+.+++.+.+...... . ......++++..+|+.+..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 456789999999999999999874 4599999999999998643211100 0 00113578889998433222
Q ss_pred cCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEE
Q psy10573 121 LTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~ 157 (206)
. ..+.||.|+....+. .+++.+.++|+|||++++.
T Consensus 112 ~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 112 A--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred c--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1 224779998655443 3578899999999865543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=87.06 Aligned_cols=97 Identities=25% Similarity=0.278 Sum_probs=68.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 126 (206)
+.++.+|||+|||+|.++..+++.. ...++++|+++.+++.+++ .+++++.+|..+.. ++ +++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~~~--~~~ 74 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLEAF--PDK 74 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhccccc--CCC
Confidence 5678899999999999998887643 3478999999999988864 24677777743322 34 678
Q ss_pred CeeEEEecCChHHHH---HHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYN---SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~---~~~~~~L~~gG~l~~~~~~ 160 (206)
+||+|+++..++++. ..+.+++++++.++++.++
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 899999998876531 2233344556666655443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=87.73 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=104.3
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+..-+|..+...++++..|. +.||..|+|-|+|+|.++-.+++..+|.++++.+|+.+...+.|.+.+++.+.
T Consensus 82 LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---- 155 (314)
T KOG2915|consen 82 LPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---- 155 (314)
T ss_pred ccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----
Confidence 344566777778889999998 99999999999999999999999999999999999999999999999998442
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChHH-HHHHHHhcccCCc-EEEEEecCCC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE-YNSWLLDQLVPGG-RMVMPVGEPF 162 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG-~l~~~~~~~~ 162 (206)
..+++++.-| .....|......+|.|+.+.+.++ .+-.+.++||.+| +++...++.+
T Consensus 156 ~~~vt~~hrD-Vc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 156 GDNVTVTHRD-VCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred CcceEEEEee-cccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 3689999999 333445345678899999877655 3344556787655 7776677655
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=91.45 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc-----CCCceEEEEcccc-cccccCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-----DQGRVQFVAYFWL-RHLLLTN 123 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-----~~~~i~~~~~d~~-~~~~~~~ 123 (206)
++.+|||+|||-|+.+.-+... .-..++|+|++...++.|++++........ ..-...++.+|.. ....-.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999988877653 334999999999999999999943110000 0123567777721 1111012
Q ss_pred CC--CCeeEEEecCChHH----------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 124 PH--GSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 124 ~~--~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++ ..||+|.+...+|. ++..+...|+|||+++.+++...
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 33 58999999998864 67899999999999999999865
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-10 Score=94.32 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=87.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.=+..++..++..+.+++.|+++..++.+++++.+ .+..++.+...|....... ..+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-----~G~~nv~v~~~D~~~~~~~--~~~~ 183 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-----CGVSNVALTHFDGRVFGAA--LPET 183 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeEEEEeCchhhhhhh--chhh
Confidence 57899999999999999999999887677999999999999999999988 4456788888883322112 2456
Q ss_pred eeEEEecCChH----------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE----------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|+++.++. .+++.+.+.|+|||+|+-++++-.
T Consensus 184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 89999988851 256788899999999999988744
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=80.76 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=102.3
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
+.|.+.+..+|. .--+++.+.+.|...+. ...+..|||+|.|+|.++..++++.-+...++++|.|++.+....+.+
T Consensus 17 k~wi~~PrtVGa-I~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 17 KGWIDNPRTVGA-ILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred HHHhcCCceeee-ecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC
Confidence 345566677662 23367888999998887 788999999999999999999877656669999999999999998876
Q ss_pred hccCccccCCCceEEEEcccccc----cccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 96 DKGNSELLDQGRVQFVAYFWLRH----LLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. .+.++.+|.... ..+ ++..||.|++..++- .+++.+...|.+||.++..++++-
T Consensus 94 p----------~~~ii~gda~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 94 P----------GVNIINGDAFDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred C----------CccccccchhhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 4 355788882211 123 566789999987752 367888999999999999999854
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=86.27 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=87.7
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
..+||||||.|.+...+++.. |...++|||+....+..+.+.+.+. +..|+.+++.|+.....+-.++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~-----~l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKEL-----GLKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHc-----CCCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999999999887 8889999999999999999888873 3349999999955544433467799999
Q ss_pred EecCChH--------------HHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 132 QSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 132 ~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
+++.+.+ .+++.+.+.|+|||.|.+.+-....
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 9987742 3778999999999999998876553
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=89.86 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc-cCccccCCCceEEEEcccc-----ccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVAYFWL-----RHLLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~-----~~~~~ 121 (206)
.+++..++++|||-|+.++.+-+.. -+.++++||++..++.|++++.+ .+....-...+.|+.+|.. +..++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 4788999999999999988776432 24899999999999999999986 2111011124688999822 12223
Q ss_pred CCCCCCeeEEEecCChHH----------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++.+||+|.|...+|. ++.++.+.|+|||.++.++|...
T Consensus 193 --~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 193 --KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred --CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 5556899999888753 56788999999999999999864
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=84.19 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=71.8
Q ss_pred HHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 38 AQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 38 ~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
..+.+.+... ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+. ..++++..+|..
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~ 122 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCch
Confidence 3444454421 3567899999999999999998753 3799999999999999998865221 146888888832
Q ss_pred cccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEE
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMV 155 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~ 155 (206)
. .+++||+|++...+++ +++.+.+.++ +|.++
T Consensus 123 ----~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i 162 (230)
T PRK07580 123 ----S--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIF 162 (230)
T ss_pred ----h--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEE
Confidence 2 3567899998776633 3455555544 44343
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=85.33 Aligned_cols=125 Identities=24% Similarity=0.223 Sum_probs=82.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-cccc------------
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-SELL------------ 103 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~------------ 103 (206)
....+..|.+....+..+|||||.+|.++..+++.+++. .+.|+||++..+..|+++++-.. .+..
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 333445555555677899999999999999999999765 79999999999999999987311 0000
Q ss_pred ----------------C-CCceEEEEccc-cccccc-CCCCCCeeEEEecCC------------hHHHHHHHHhcccCCc
Q psy10573 104 ----------------D-QGRVQFVAYFW-LRHLLL-TNPHGSTRVIQSCWT------------KEEYNSWLLDQLVPGG 152 (206)
Q Consensus 104 ----------------~-~~~i~~~~~d~-~~~~~~-~~~~~~~D~i~~~~~------------~~~~~~~~~~~L~~gG 152 (206)
+ ..++.+...+. .+...| ......||+|.|-.. +..++.+++++|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 0 00222222220 000000 124567899977322 3457799999999999
Q ss_pred EEEEEecCCC
Q psy10573 153 RMVMPVGEPF 162 (206)
Q Consensus 153 ~l~~~~~~~~ 162 (206)
++++.-..+.
T Consensus 204 iLvvEPQpWk 213 (288)
T KOG2899|consen 204 ILVVEPQPWK 213 (288)
T ss_pred EEEEcCCchH
Confidence 9998765544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=84.11 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=79.9
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 106 (206)
.|++++.+.+...++ +. .....+|||+|||+|.++..++... +..+++++|+++.+++.+++++ +
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------~ 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------P 109 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------c
Confidence 577776666654442 22 3446799999999999998887764 3459999999999999998764 3
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCChHH--------------------------HHHHHHhcccCCcEEEEE
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE--------------------------YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~--------------------------~~~~~~~~L~~gG~l~~~ 157 (206)
+++++.+|..+. . .+.+||+|++++++.. .+......|+|+|.+++.
T Consensus 110 ~v~~v~~D~~e~--~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 110 EAEWITSDVFEF--E--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CCEEEECchhhh--c--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 578888884321 1 2457899999988632 223445678888876665
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-10 Score=94.25 Aligned_cols=149 Identities=16% Similarity=0.082 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHhhccCCC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 33 SPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
.+...+.+.+.+.+.+.+ +.++||++||+|.++..+++... +|+++|+++.+++.+++++..++ ..+++++
T Consensus 188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~ 259 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANG-----IDNVQII 259 (362)
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 345566666666544432 35799999999999998887653 89999999999999999988743 3489999
Q ss_pred Ecccccccc-cC-C-----------CCCCeeEEEecCChHHHHHHHHhc-ccCCcEEEEEecCCCCCeeEEEEEecCCCc
Q psy10573 112 AYFWLRHLL-LT-N-----------PHGSTRVIQSCWTKEEYNSWLLDQ-LVPGGRMVMPVGEPFKGQNLTIIDKLADGY 177 (206)
Q Consensus 112 ~~d~~~~~~-~~-~-----------~~~~~D~i~~~~~~~~~~~~~~~~-L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (206)
.+|+.+... +. . ....||+|+.+++-..+.+++.+. .++++++++++...+-...+..+. . +
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-g 335 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-T 335 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-C
Confidence 999432211 10 0 012579999999864433333332 347888888877644222233332 2 4
Q ss_pred eEEEEEEeeEEeeeccc
Q psy10573 178 TIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (206)
|.. ..+....+.|.+.
T Consensus 336 Y~l-~~v~~~DmFPqT~ 351 (362)
T PRK05031 336 HKV-ERFALFDQFPYTH 351 (362)
T ss_pred cEE-EEEEEcccCCCCC
Confidence 777 7777777777654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-10 Score=87.73 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=77.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~ 127 (206)
..+++|||+.|-+|.++..++... ..+|+.||.|..+++.+++++..++. ...+++++..|+.+... . -..+.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~-~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRL-KKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHH-HHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHH-hcCCC
Confidence 458999999999999999887533 23899999999999999999998653 24578999999432211 1 02457
Q ss_pred eeEEEecCCh------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+||++++. ..++..+.++|+|||.+++++.+..
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 8999999883 3477888999999999998888765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-09 Score=84.04 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=80.0
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
..+||.+ ..+.+...+++.+. ..++.+|||+|||+|.++..+++... .++++|+++.+++.+++++..
T Consensus 5 k~~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~------ 73 (253)
T TIGR00755 5 KSLGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL------ 73 (253)
T ss_pred CCCCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc------
Confidence 3456655 66888888988886 67889999999999999999998763 799999999999999987643
Q ss_pred CCCceEEEEcccccccccCCCCCCee---EEEecCChHHHHHHHHhcc
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTR---VIQSCWTKEEYNSWLLDQL 148 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D---~i~~~~~~~~~~~~~~~~L 148 (206)
..+++++.+|... .++ + ++| +|+++.+.+-....+.+++
T Consensus 74 -~~~v~v~~~D~~~-~~~--~--~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 74 -YERLEVIEGDALK-VDL--P--DFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred -CCcEEEEECchhc-CCh--h--HcCCcceEEEcCChhhHHHHHHHHh
Confidence 2578999999322 222 1 345 8898888765444444444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=87.61 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
....+++.+... ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...........++.+...|
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 344555555421 125789999999999999999874 3499999999999999999876521100112357787777
Q ss_pred cccccccCCCCCCeeEEEecCChHH
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
... .+++||+|++...+++
T Consensus 206 l~~------l~~~fD~Vv~~~vL~H 224 (315)
T PLN02585 206 LES------LSGKYDTVTCLDVLIH 224 (315)
T ss_pred hhh------cCCCcCEEEEcCEEEe
Confidence 321 2466799998766543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=86.70 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=74.5
Q ss_pred cCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+|+.+ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~------- 86 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE------- 86 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc-------
Confidence 345544 66778888888776 6788999999999999999999875 3 899999999999999887642
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
.+++++.+|+.+ .++ ++-..|.|++|.+..
T Consensus 87 -~~v~~i~~D~~~-~~~--~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 87 -DNLTIIEGDALK-VDL--SELQPLKVVANLPYN 116 (272)
T ss_pred -CceEEEEChhhc-CCH--HHcCcceEEEeCCcc
Confidence 579999999432 222 221148899988864
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=87.22 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
....+||.+|+|.|..++.+++.. +..+++.+|+++.+++.+++.+...... ...++++++.+|....... .+++|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~--~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEK--RDEKF 177 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhh--CCCCc
Confidence 456799999999999999888754 3458999999999999999998652211 2357899999994443333 45678
Q ss_pred eEEEecCCh------------HHHHH-HHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK------------EEYNS-WLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~------------~~~~~-~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++..- ..+.+ .+.+.|+|||++++...+
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 999997321 12456 788999999999876544
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-10 Score=84.89 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=70.7
Q ss_pred CCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.++. .++|+|||+|..++.++.... +|+++|+|+.+++.+++.....-+ .....+...+ ..++-=.+++
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~---~v~L~g~e~S 100 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDE---MVDLLGGEES 100 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccc----cCCccccccc---cccccCCCcc
Confidence 4444 899999999988888888764 999999999999999887543110 0011111111 1112002789
Q ss_pred eeEEEecCChHH-----HHHHHHhcccCCc-EEEEEecC
Q psy10573 128 TRVIQSCWTKEE-----YNSWLLDQLVPGG-RMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~-----~~~~~~~~L~~gG-~l~~~~~~ 160 (206)
+|+|++...+|. +.+.++++|++.| .+.+..+.
T Consensus 101 VDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999999888765 5688899998655 88887776
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=84.49 Aligned_cols=96 Identities=25% Similarity=0.268 Sum_probs=76.2
Q ss_pred cCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
-+||++ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~------- 73 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA------- 73 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------
Confidence 356666 67888889988876 6788999999999999999999863 3899999999999999988753
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
..+++++.+|..+ .++ ..+|.|++|.+..
T Consensus 74 ~~~v~ii~~D~~~-~~~----~~~d~Vv~NlPy~ 102 (258)
T PRK14896 74 AGNVEIIEGDALK-VDL----PEFNKVVSNLPYQ 102 (258)
T ss_pred CCCEEEEEecccc-CCc----hhceEEEEcCCcc
Confidence 2579999999432 222 2369999987764
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=77.29 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=81.1
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHhhhccCc
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR---------VYGVEHVMELAESSIKNIDKGNS 100 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~---------v~~iD~s~~~~~~a~~~~~~~~~ 100 (206)
....|.+...|+.... ..++..+||-.||+|++....+... .... ++|+|+++.++..+++++...+.
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3356777777877766 7888999999999999999887665 3334 89999999999999999987443
Q ss_pred cccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEe
Q psy10573 101 ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 101 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+ ..+.+...|. ...++ .++++|+|++|+++ ..+.+++.+++++ ..+++++
T Consensus 87 ~----~~i~~~~~D~-~~l~~--~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 87 E----DYIDFIQWDA-RELPL--PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp C----GGEEEEE--G-GGGGG--TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred C----CceEEEecch-hhccc--ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 2 4588988883 33334 67889999999885 2355788888888 3343333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-09 Score=83.48 Aligned_cols=103 Identities=21% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHH--HhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI--KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~--~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
-.|.+|||||||+|+++..++... +. .|+|+|.++...-..+ +++.. ....+.++... .+..+. .+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~G-A~-~ViGiDP~~lf~~QF~~i~~~lg------~~~~~~~lplg-vE~Lp~---~~ 181 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRG-AK-SVIGIDPSPLFYLQFEAIKHFLG------QDPPVFELPLG-VEDLPN---LG 181 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcC-CC-EEEEECCChHHHHHHHHHHHHhC------CCccEEEcCcc-hhhccc---cC
Confidence 468899999999999999888764 32 8999999987654422 22211 01223333222 222221 45
Q ss_pred CeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCCC
Q psy10573 127 STRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 127 ~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
.||+|++-.++.| .+.++...|++||.+++.+.-..+
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 6899999988865 568899999999999988775443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-09 Score=83.67 Aligned_cols=122 Identities=24% Similarity=0.162 Sum_probs=89.2
Q ss_pred HHHHHHHHhhccCCC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+..++..+.....+ ..+||-||.|.|..++.+++.. +..+++.+|+++.+++.+++.+........ .+++.++.+|
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~D 138 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDD 138 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEecc
Confidence 444444444322222 2699999999999999999876 455999999999999999999987332212 5899999999
Q ss_pred cccccccCCCCCCeeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..+...- ...+||+|+++..- ..+.+.|.+.|+++|+++..+.++
T Consensus 139 g~~~v~~--~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 139 GVEFLRD--CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred HHHHHHh--CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 3333221 22367999997553 346799999999999999885553
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-10 Score=91.85 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhhccCC-CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 34 PHIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
+.....+++.+.+.+. .+.+|||+|||+|.++..+++... +++++|+++.+++.+++++..++ ..+++++.
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~ 251 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIR 251 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEE
Confidence 4445555555444333 234799999999999998887653 89999999999999999998743 34799999
Q ss_pred cccccccc--cC---C---C-----CCCeeEEEecCChHHHHHHH-HhcccCCcEEEEEecCCCCCeeEEEEEecCCCce
Q psy10573 113 YFWLRHLL--LT---N---P-----HGSTRVIQSCWTKEEYNSWL-LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 178 (206)
Q Consensus 113 ~d~~~~~~--~~---~---~-----~~~~D~i~~~~~~~~~~~~~-~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 178 (206)
+|..+... .. + . ...||+|+.+++-..+...+ ..+.+|++++++++...+-...+..+. .+ |
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y 327 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-H 327 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-c
Confidence 99432111 00 0 0 12379999999843332223 223357888888877755323333332 22 7
Q ss_pred EEEEEEeeEEeeeccc
Q psy10573 179 IVTTVVRGVRTNPLYR 194 (206)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (206)
.. ..+....+.|.+.
T Consensus 328 ~l-~~v~~~DmFP~T~ 342 (353)
T TIGR02143 328 RV-ERFALFDQFPYTH 342 (353)
T ss_pred EE-EEEEEcccCCCCC
Confidence 76 7777776666653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-08 Score=77.03 Aligned_cols=118 Identities=18% Similarity=0.050 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.+.+...+.. .-.+.++||++||+|.++..++.+.. .+++++|.++.+++.+++++..++.+ .+++++.+|
T Consensus 35 ~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D 107 (189)
T TIGR00095 35 VVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNS 107 (189)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehh
Confidence 344455555532 23578999999999999999988652 38999999999999999999874321 368899999
Q ss_pred cccccc-cCCCCC-CeeEEEecCChH-----HHHHHHH--hcccCCcEEEEEecC
Q psy10573 115 WLRHLL-LTNPHG-STRVIQSCWTKE-----EYNSWLL--DQLVPGGRMVMPVGE 160 (206)
Q Consensus 115 ~~~~~~-~~~~~~-~~D~i~~~~~~~-----~~~~~~~--~~L~~gG~l~~~~~~ 160 (206)
...... + ...+ .+|+|+.++++. .+++.+. .+|+++|++++....
T Consensus 108 ~~~~l~~~-~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 108 ALRALKFL-AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHHHh-hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 433221 1 0122 379999988863 2333332 368899988877654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-09 Score=75.51 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
....++|||||+|..+..+++..++.....++|+++.+.+..++.+..+. ..++.++.|... .+..++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~----~l~~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLS----GLRNESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHh----hhccCCcc
Confidence 46789999999999999999988887778899999999999998887643 357888888432 23458889
Q ss_pred EEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++.|++. ..++..+-..|.|.|.+++.....+
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 99998773 2244566778899999998876554
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-09 Score=77.29 Aligned_cols=96 Identities=22% Similarity=0.176 Sum_probs=70.2
Q ss_pred ccccCcHHHHHHHHHHhh-ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC
Q psy10573 28 GADISSPHIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 106 (206)
-|..+.+.+.+.++.... .-.-.+..|+|+|||||.+++.++... +. .|+++|+++++++.++++..+. ..
T Consensus 22 EQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~-~V~~vdiD~~a~ei~r~N~~~l------~g 93 (198)
T COG2263 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-AS-RVLAVDIDPEALEIARANAEEL------LG 93 (198)
T ss_pred eecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-Cc-EEEEEecCHHHHHHHHHHHHhh------CC
Confidence 344455556555555443 112456789999999999999887543 43 9999999999999999999862 25
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
++.|+.+|... -.+.+|.++.|+++
T Consensus 94 ~v~f~~~dv~~------~~~~~dtvimNPPF 118 (198)
T COG2263 94 DVEFVVADVSD------FRGKFDTVIMNPPF 118 (198)
T ss_pred ceEEEEcchhh------cCCccceEEECCCC
Confidence 79999999433 23445999999886
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-09 Score=80.93 Aligned_cols=122 Identities=24% Similarity=0.273 Sum_probs=81.3
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc--cC-----c
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK--GN-----S 100 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~-----~ 100 (206)
...-..|.+.+.+-. +. ..++.+||..|||.|..+..|+... .+|+|+|+|+.+++.+.+.... .. .
T Consensus 18 ~~~~~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 18 DQGEPNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp --TTSTHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence 333356666666555 44 6778899999999999999999753 4999999999999998332211 10 0
Q ss_pred cccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEE
Q psy10573 101 ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 101 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~ 157 (206)
......+|+++++|+.+..+- ..++||+|+-...+ ..+.+.+.++|+|||.+++.
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~--~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPE--DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGS--CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred eeecCCceEEEEcccccCChh--hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 001234689999994332221 23578999887665 34778999999999994433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-09 Score=83.47 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|.+.+.+.+... +++|..|||--||||++...+.-. +++++|+|++..++.-++.|+...+ .....+.
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 45777777777765 899999999999999999988653 3599999999999999999998732 2355555
Q ss_pred Ec-ccccccccCCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEec
Q psy10573 112 AY-FWLRHLLLTNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 112 ~~-d~~~~~~~~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. | ....++ ++.++|.|+++++. ...++.+.++|++||++++..+
T Consensus 251 ~~~D-a~~lpl--~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLD-ATNLPL--RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred Eecc-cccCCC--CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55 7 444556 78889999998873 3466889999999999999988
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-09 Score=84.61 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=78.6
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
...||++ ..+.+...+++.+. +.++..|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~---- 82 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP---- 82 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----
Confidence 4457777 67888999998876 7888999999999999999998754 389999999999999999886521
Q ss_pred CCCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
...+++++.+|+.+. .-..+|+|++|.+..
T Consensus 83 ~~~~v~ii~~Dal~~-----~~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 83 LASKLEVIEGDALKT-----EFPYFDVCVANVPYQ 112 (294)
T ss_pred CCCcEEEEECCHhhh-----cccccCEEEecCCcc
Confidence 135799999994331 123469999987763
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=82.63 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=96.4
Q ss_pred cCccccccccccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSI 92 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~ 92 (206)
...|+|.-+..-.+.++ ...++....-+.+.---.+..+||++|||.|.....+++... ++-.+++.|.|+.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 45566666665555554 335666666665541112233799999999999999987652 2368899999999999999
Q ss_pred HhhhccCccccCCCceEEEEcccc-cccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 93 KNIDKGNSELLDQGRVQFVAYFWL-RHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
++-.- +..++.....|.. +....-...+++|+|++...+ ...++.+.++|||||.+++.-++..+
T Consensus 115 ~~~~~------~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 115 KSSGY------DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred hcccc------chhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 87653 1233433333421 111222378899999776554 34678999999999999999888764
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-09 Score=83.76 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCceEEEE-ccccc-ccccCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVA-YFWLR-HLLLTNPHG 126 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~i~~~~-~d~~~-~~~~~~~~~ 126 (206)
.+.++||||||+|.....++... ++.+++++|+++.+++.|++++..+ +. ..++.++. .|... ......+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCC
Confidence 45799999999998887777655 5679999999999999999999884 32 24677754 23111 011101466
Q ss_pred CeeEEEecCChHH
Q psy10573 127 STRVIQSCWTKEE 139 (206)
Q Consensus 127 ~~D~i~~~~~~~~ 139 (206)
.||+|+||++++.
T Consensus 189 ~fDlivcNPPf~~ 201 (321)
T PRK11727 189 RFDATLCNPPFHA 201 (321)
T ss_pred ceEEEEeCCCCcC
Confidence 8899999999854
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-10 Score=84.46 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
.++.|...+.++..+. ..+=.++||+|||||-.+..+..... +++|+|+|+.|++.|.++-- .-+
T Consensus 107 ~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~----------YD~ 171 (287)
T COG4976 107 GYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGL----------YDT 171 (287)
T ss_pred cCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccc----------hHH
Confidence 3456777777777765 44457999999999999988877664 89999999999999986421 112
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPFKG 164 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~~~ 164 (206)
+.+++...... .+.+..||+|++..++. .++-.+...|+|||.+.+++....+.
T Consensus 172 L~~Aea~~Fl~-~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 172 LYVAEAVLFLE-DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHHHHHHhh-hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 33333221111 02455679998877764 46677889999999999998876543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-09 Score=81.30 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
++..++-..... ....++||-+|.|.|..++.+++. +. +|+.+|+++++++.+++.+..... ..+.++++++..-
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~~ 132 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQL 132 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeehh
Confidence 455554443321 255689999999999999999986 33 999999999999999998876222 2456788877521
Q ss_pred cccccccCCCCCCeeEEEecCCh-HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTK-EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ - ..++||+|+++... ....+.+.+.|+|||+++....++.
T Consensus 133 -~~---~--~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 133 -LD---L--DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred -hh---c--cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 11 1 23567999998443 4566889999999999998776654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-09 Score=77.07 Aligned_cols=120 Identities=19% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHhhccCCCCCe-EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE--EEccc
Q psy10573 39 QMLELLKDKIKPGAR-ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VAYFW 115 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~-vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~--~~~d~ 115 (206)
.+++.|.+.+.+... |||||||||..+.++++.+ |+....-.|.++..+..........+.... .+.+.+ -..++
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv-~~P~~lDv~~~~w 90 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNV-RPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCccc-CCCeEeecCCCCC
Confidence 355555555555554 9999999999999999998 777778889999887777776665333211 112222 11111
Q ss_pred ccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.-..+.....++||.|++...+| .+++.+.+.|++||.++++-+-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 11111011466889999988865 3678889999999999877553
|
The function of this family is unknown. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=77.41 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=83.3
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-------CccccC
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-------NSELLD 104 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~ 104 (206)
..|.+.+.+.+. . ..++.+||+.|||.|..+..|+... .+|+|+|+|+.+++.+.+..... ......
T Consensus 28 pnp~L~~~~~~l-~--~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSKL-N--INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHhc-C--CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 556565555442 2 3567899999999999999999854 38999999999999986532110 000011
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+++++++|+.+..+..-..+.||.|+....+. .+.+.+.++|+|||.+++.+..
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2468999999433211100125689998766653 3668899999999999888764
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=76.52 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=84.7
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
+.+.-.+.+.+...|....-.+.++||+.||+|.++..++.+.. .+++.||.++.++...+++++..+.. .+++
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~ 95 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLE----DKIR 95 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-G----GGEE
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCC----ccee
Confidence 33445567777777763214689999999999999998887653 39999999999999999999873322 3588
Q ss_pred EEEcccccccc-cCCCCCCeeEEEecCChH------HHHHHHH--hcccCCcEEEEEecCC
Q psy10573 110 FVAYFWLRHLL-LTNPHGSTRVIQSCWTKE------EYNSWLL--DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 110 ~~~~d~~~~~~-~~~~~~~~D~i~~~~~~~------~~~~~~~--~~L~~gG~l~~~~~~~ 161 (206)
++..|...... .......||+|+++++.. .+++.+. .+|+++|++++.....
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 88888322211 001456789999999863 2445554 6789999999988665
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=84.16 Aligned_cols=130 Identities=22% Similarity=0.179 Sum_probs=86.4
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHhhhcc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA------GPEGRVYGVEHVMELAESSIKNIDKG 98 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~ 98 (206)
...|+.++...+...|.+.+. ..++.+|+|.+||+|.+...+.+.. ....+++|+|+++.....|+-++...
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~ 100 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH 100 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT
T ss_pred cccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh
Confidence 345777788888888888885 6778899999999999998887643 24569999999999999998777543
Q ss_pred CccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH---------------------------HHHHHHHhcccCC
Q psy10573 99 NSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE---------------------------EYNSWLLDQLVPG 151 (206)
Q Consensus 99 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~---------------------------~~~~~~~~~L~~g 151 (206)
+. ......+..+|....... .....||+|++++++- .++..+.+.|++|
T Consensus 101 ~~---~~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 101 GI---DNSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG 176 (311)
T ss_dssp TH---HCBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred cc---cccccccccccccccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence 21 123456777773222222 0256789999988741 2457889999999
Q ss_pred cEEEEEecC
Q psy10573 152 GRMVMPVGE 160 (206)
Q Consensus 152 G~l~~~~~~ 160 (206)
|++.+.++.
T Consensus 177 G~~~~Ilp~ 185 (311)
T PF02384_consen 177 GRAAIILPN 185 (311)
T ss_dssp EEEEEEEEH
T ss_pred cceeEEecc
Confidence 998887775
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-09 Score=81.30 Aligned_cols=110 Identities=26% Similarity=0.263 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC-C
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG-S 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~ 127 (206)
....+||-||.|.|..+..+.+.. +..+++.+|+++.+++.|++.+...... ...++++++.+|......- ..+ +
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~--~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKE--TQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHT--SSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHh--ccCCc
Confidence 468999999999999999998654 3459999999999999999988752211 2357899999994332221 223 7
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+.+..- ....+.+.+.|+|+|++++...+..
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 8999986553 3467899999999999998875544
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=79.90 Aligned_cols=93 Identities=25% Similarity=0.274 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|+|+|+|+|.++..+++.. |+.+++..|. |.+++.+++ . .+++++.+|+. .++ |.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--~---------~rv~~~~gd~f--~~~--P~-- 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE--A---------DRVEFVPGDFF--DPL--PV-- 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--T---------TTEEEEES-TT--TCC--SS--
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--c---------cccccccccHH--hhh--cc--
Confidence 4566799999999999999999888 8889999997 778888877 1 58999999954 334 45
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCC--cEEEEEec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPG--GRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~g--G~l~~~~~ 159 (206)
+|+++....+|. +++++.+.|+|| |+|++.-.
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 799999888764 779999999998 99988743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=75.44 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=80.3
Q ss_pred HHHHHHHHhh-ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+.+.+..-+. -.+.+|.+||.+|+++|+...+++...++.+.||++|.|+......-+.+.. .+|+--+.+|
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~D 130 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILED 130 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeecc
Confidence 4455544443 2368999999999999999999999998899999999999765555444333 3688888888
Q ss_pred cccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEec
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
......|..--+.+|+|+++-.-+ -+..++...||+||.+++..-
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 544444432234889999985543 255777889999999988764
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=85.79 Aligned_cols=122 Identities=20% Similarity=0.154 Sum_probs=88.4
Q ss_pred CcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 32 SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
..+...+.|++...+.+ .++.++||+-||.|.++..+++... +|+|+|+++++++.|+++++.++ ..|++
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~ 344 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANG-----IDNVE 344 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcC-----CCcEE
Confidence 34556666666555444 4678999999999999999997553 99999999999999999999844 45799
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+.++......-......+|+|+.+++-. .+++. ...++|..++++++...+
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~-l~~~~p~~IvYVSCNP~T 400 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQ-LAKLKPKRIVYVSCNPAT 400 (432)
T ss_pred EEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHH-HHhcCCCcEEEEeCCHHH
Confidence 99998333222101234679999998853 33333 344578888888877655
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-09 Score=84.02 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.+...+++.+. +.++..+||++||.|+++..+++..++.++|+|+|.++.+++.+++++.. ..++.++.+
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 567888888886 67889999999999999999999886578999999999999999988753 247999999
Q ss_pred ccccccccCCCCC--CeeEEEecCC
Q psy10573 114 FWLRHLLLTNPHG--STRVIQSCWT 136 (206)
Q Consensus 114 d~~~~~~~~~~~~--~~D~i~~~~~ 136 (206)
|+.+.... ++++ ++|.|+++.+
T Consensus 76 ~f~~l~~~-l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 76 NFSNLKEV-LAEGLGKVDGILLDLG 99 (296)
T ss_pred CHHHHHHH-HHcCCCccCEEEECCC
Confidence 94433222 1222 6899988765
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=77.27 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=72.5
Q ss_pred ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 46 DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 46 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.+.++..|+|+.||.|.++..+++.. +...|+++|++|.+++.+++++..++.+ .++..+.+|..+. .+.
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~----~~~ 167 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREF----LPE 167 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG-------T
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHh----cCc
Confidence 347889999999999999999998754 5568999999999999999999986643 5688999994322 136
Q ss_pred CCeeEEEecCCh--HHHHHHHHhcccCCcEEE
Q psy10573 126 GSTRVIQSCWTK--EEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 126 ~~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~ 155 (206)
+.+|.|+++.+. ..+++.+..++++||++-
T Consensus 168 ~~~drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 778999998773 457788999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-08 Score=74.73 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.....+...+. +..++++||+|.=+|+.+..++..+.+.++++++|++++..+.+.......+. ...++++.+
T Consensus 59 ~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g 132 (237)
T KOG1663|consen 59 PDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEG 132 (237)
T ss_pred hHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeec
Confidence 433333333343 56789999999999999999999888889999999999999999777665443 257899998
Q ss_pred ccccccc---cCCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEEe
Q psy10573 114 FWLRHLL---LTNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 114 d~~~~~~---~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~ 158 (206)
+..+... -+...++||.++++..-.. +.+++.+++++||+|++--
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 8333211 1236789999999988654 5588999999999998764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=79.43 Aligned_cols=108 Identities=24% Similarity=0.163 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~ 126 (206)
.+.|.+|||-|.|-|+.++..++... .+|+.+|.++.+++.|+-|--... .....+.++.+|..+. ..| +++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~--~D~ 204 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDF--DDE 204 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcC--Ccc
Confidence 46699999999999999999987542 289999999999999875543211 1223689999994333 335 999
Q ss_pred CeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|+.+++- ..+.++++++|+|||+++=.+.++.
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 99999999883 3356899999999999998888776
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=81.20 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+-.++.|||+|||+|.++...++... .+|+++|.|.-+ +.|.+....++.+ ..++++.+. .+...+ |-++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gk-vEdi~L--P~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGK-VEDIEL--PVEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecc-eEEEec--Cccc
Confidence 45789999999999999999987653 499999987754 8888888875543 358888888 333334 7788
Q ss_pred eeEEEecCChHHHH---------HHHHhcccCCcEEEE
Q psy10573 128 TRVIQSCWTKEEYN---------SWLLDQLVPGGRMVM 156 (206)
Q Consensus 128 ~D~i~~~~~~~~~~---------~~~~~~L~~gG~l~~ 156 (206)
+|+|++-+.-..++ -.=.+.|+|||.++=
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 89999977743322 233568999998753
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.4e-08 Score=79.19 Aligned_cols=109 Identities=26% Similarity=0.189 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
..+|.+|||++++.|.=+.+++..... +..|+++|.++..++..++++.+ .+..++..+..|....... .+.+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-----lG~~nv~~~~~d~~~~~~~-~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-----LGVRNVIVVNKDARRLAEL-LPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-----cCCCceEEEeccccccccc-cccc
Confidence 789999999999999999999988754 34569999999999999999998 4456777777772211111 1233
Q ss_pred -CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 -STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 -~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.||.|++++++ ..+++...+.|||||+++.++++..
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 58999999885 1266888999999999999999866
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=80.71 Aligned_cols=112 Identities=16% Similarity=0.060 Sum_probs=80.8
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+...+.+.+.. ..++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++++..++ ..++.+..+|.
T Consensus 44 l~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da 116 (382)
T PRK04338 44 ISVLVLRAFGP-KLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDA 116 (382)
T ss_pred HHHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhH
Confidence 34444444431 11356899999999999999987653 3489999999999999999998744 34567888884
Q ss_pred ccccccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEE
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~ 157 (206)
..... ..+.||+|++++. ...+++.+...+++||+++++
T Consensus 117 ~~~l~---~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 117 NALLH---EERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHHh---hcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 22111 0345799999864 234667777888999999988
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-08 Score=73.08 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=69.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 126 (206)
...+.+|||+|||+|..+..++... ...+|+..|.++ .++.++.+++.+.. ....++.+...||.+.... .+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCcccccccccc
Confidence 4678899999999999999988764 345999999999 99999999887431 1235688888886543210 02456
Q ss_pred CeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.||+|+....+ +.+++.+.++|+++|.+++.....
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 78999987664 447788899999998876665443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-08 Score=75.16 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=70.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~ 128 (206)
...++||||+|.|..+..++..+. +|+++|.|+.|....++ ..++++..+ +.+ .+.+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~------------kg~~vl~~~~w~~------~~~~f 152 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK------------KGFTVLDIDDWQQ------TDFKF 152 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh------------CCCeEEehhhhhc------cCCce
Confidence 346899999999999999998875 89999999988766654 245555544 321 23456
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|.|-..++ .+++.+++.|+|+|++++.+--+
T Consensus 153 DvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 153 DVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred EEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 9999977764 37899999999999998876544
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-08 Score=72.58 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=91.1
Q ss_pred cccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 9 FFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 9 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
|.....+..|...+...|+-++-. .-...+.+.. ..+.++..|+|||+..|.++..+++..++.+.|+++|+.|-
T Consensus 7 wl~~~~~D~Y~~~Ak~~gyRSRAa--~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-- 81 (205)
T COG0293 7 WLAEHLRDPYYKKAKKEGYRSRAA--YKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-- 81 (205)
T ss_pred HHHHhhcCHHHHHHhhccccchHH--HHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc--
Confidence 333344666666666666544311 1122333333 34688999999999999999999999988788999999771
Q ss_pred HHHHHhhhccCccccCCCceEEEEccccccccc-----CCCCCCeeEEEecCCh--------HH---------HHHHHHh
Q psy10573 89 ESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-----TNPHGSTRVIQSCWTK--------EE---------YNSWLLD 146 (206)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~~~~D~i~~~~~~--------~~---------~~~~~~~ 146 (206)
...+++.++++|......+ .+....+|+|+++... ++ .++-+..
T Consensus 82 --------------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~ 147 (205)
T COG0293 82 --------------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALE 147 (205)
T ss_pred --------------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHH
Confidence 1135688999883222111 1345557999987664 21 3466678
Q ss_pred cccCCcEEEEEecCCCC
Q psy10573 147 QLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 147 ~L~~gG~l~~~~~~~~~ 163 (206)
.|+|||.+++-.+.+..
T Consensus 148 vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 148 VLKPGGSFVAKVFQGED 164 (205)
T ss_pred eeCCCCeEEEEEEeCCC
Confidence 99999999999887653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.8e-08 Score=83.20 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=72.5
Q ss_pred CccccCcHHHHHHHHHHhhccCC-----CCCeEEEEcccCchHHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHh
Q psy10573 27 YGADISSPHIHAQMLELLKDKIK-----PGARILDIGSGSGYLTACLAYMAG-------PEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDlG~G~G~~~~~l~~~~~-------~~~~v~~iD~s~~~~~~a~~~ 94 (206)
.|+.++.+.+...|++.+..... ...+|||.|||+|.+...++.... ....++++|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 47888899999999988753222 346899999999999998887652 124789999999999999988
Q ss_pred hhccCccccCCCceEEEEcccccccc--cCCCCCCeeEEEecCCh
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLL--LTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~~D~i~~~~~~ 137 (206)
+.... ...+.+...|...... ..-..+.||+|+.|+++
T Consensus 83 l~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcC-----CCCceeeecccccccccccccccCcccEEEeCCCc
Confidence 86522 1223444444111100 00012468999998875
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-08 Score=76.41 Aligned_cols=109 Identities=20% Similarity=0.173 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++..|||++++.|+=+..++......+.+++.|+++..+...++++.+ .+..++.....|.....+. .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-----~g~~~v~~~~~D~~~~~~~-~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR-----LGVFNVIVINADARKLDPK-KPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-----TT-SSEEEEESHHHHHHHH-HHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh-----cCCceEEEEeecccccccc-ccccc
Confidence 68899999999999999999999887678999999999999999999988 4456788887773322111 02335
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcc----cCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQL----VPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L----~~gG~l~~~~~~~~ 162 (206)
||.|+++.++ ..+++.+.+.+ +|||+++.++.+-.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 7999998874 22668889999 99999999998744
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.6e-08 Score=83.47 Aligned_cols=106 Identities=21% Similarity=0.146 Sum_probs=83.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.+..+||||||.|.++..++... |...++|+|+....+..+.+.... .+..|+.++..|...... .++++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~-----~~l~N~~~~~~~~~~~~~-~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGE-----QNITNFLLFPNNLDLILN-DLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHH-hcCccccc
Confidence 45689999999999999999887 778999999999988888777665 234688888877321111 13889999
Q ss_pred EEEecCChH--------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|+++.+-+ .+++.+.+.|+|||.+.+.+-...
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 999987742 377899999999999998877654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-09 Score=85.65 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=88.6
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
++.++++ ..+.....+++.+.+.+.+ +..+||+.||.|.++..+++... +|+|+|+++.+++.|++++..++
T Consensus 169 ~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~--- 242 (352)
T PF05958_consen 169 ISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNG--- 242 (352)
T ss_dssp EETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT---
T ss_pred ECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcC---
Confidence 3334444 4456666666665544432 23899999999999999998664 99999999999999999999844
Q ss_pred cCCCceEEEEcccccc-------ccc------CCCCCCeeEEEecCChHHHHHHHHhcc-cCCcEEEEEecCCCCCeeEE
Q psy10573 103 LDQGRVQFVAYFWLRH-------LLL------TNPHGSTRVIQSCWTKEEYNSWLLDQL-VPGGRMVMPVGEPFKGQNLT 168 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~-------~~~------~~~~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~l~~~~~~~~~~~~~~ 168 (206)
..|++|+.++..+. ..+ .+....+|+|+.+++-..+-+.+.+.+ ++.-++++++...+-...+.
T Consensus 243 --i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~ 320 (352)
T PF05958_consen 243 --IDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLK 320 (352)
T ss_dssp ----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHH
T ss_pred --CCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 46899998762211 011 012346799999988543222222221 34556666655543222222
Q ss_pred EEEecCCCceEEEEEEeeEEeeeccc
Q psy10573 169 IIDKLADGYTIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
.+ .. +|.. ..+....+.|.+.
T Consensus 321 ~L---~~-~y~~-~~v~~~DmFP~T~ 341 (352)
T PF05958_consen 321 IL---KE-GYKL-EKVQPVDMFPQTH 341 (352)
T ss_dssp HH---HC-CEEE-EEEEEE-SSTTSS
T ss_pred HH---hh-cCEE-EEEEEeecCCCCC
Confidence 22 22 4777 7777776666553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=74.04 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.|. +.++..++|..+|.|+.+..+++..+ .++++|+|.++.++..+++.+... ..++.++.
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~ 75 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIH 75 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEe
Confidence 3678888999887 78889999999999999999998874 489999999999999999988652 24788888
Q ss_pred ccccccccc--CCCCCCeeEEEecCC
Q psy10573 113 YFWLRHLLL--TNPHGSTRVIQSCWT 136 (206)
Q Consensus 113 ~d~~~~~~~--~~~~~~~D~i~~~~~ 136 (206)
+++.+.... .....++|.|+.+.+
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEecc
Confidence 884332111 013356788877644
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-08 Score=73.48 Aligned_cols=101 Identities=23% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
-.+.||.|+|-|+.+..++-.... +|..+|..+..++.|++.+.... ....++.+....+..| ..++||+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P---~~~~YDl 125 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTP---EEGKYDL 125 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG-------TT-EEE
T ss_pred cceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccC---CCCcEeE
Confidence 468999999999999877433222 89999999999999998776411 1224555544332222 3468899
Q ss_pred EEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 131 IQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 131 i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|++.+.+- .++++|...|+|+|+|++--...
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99998863 37799999999999998865443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.3e-08 Score=70.55 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=61.1
Q ss_pred EEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCc
Q psy10573 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGG 152 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG 152 (206)
+|+|+|+++++.|+++...... ....+++++.+| ....++ ++++||+|++...+++ .++++.++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d-~~~lp~--~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGD-AIDLPF--DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEec-hhhCCC--CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCe
Confidence 4899999999999877653111 112479999999 455667 8889999999877654 6789999999999
Q ss_pred EEEEEecCCC
Q psy10573 153 RMVMPVGEPF 162 (206)
Q Consensus 153 ~l~~~~~~~~ 162 (206)
.+++..++.+
T Consensus 76 ~l~i~d~~~~ 85 (160)
T PLN02232 76 RVSILDFNKS 85 (160)
T ss_pred EEEEEECCCC
Confidence 9998866643
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=69.81 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=77.3
Q ss_pred ccCccccCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
.+..|..++|.+.+.|...+-.-. -.|+.++|+|||.|.++...+- . ....+.|+|+++++++.+..++++..
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~-~~e~vlGfDIdpeALEIf~rNaeEfE--- 95 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-P-KNESVLGFDIDPEALEIFTRNAEEFE--- 95 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-C-CCceEEeeecCHHHHHHHhhchHHhh---
Confidence 445677788999999988876433 2578999999999999965543 3 33489999999999999999987733
Q ss_pred cCCCceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 103 LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
-++++.++|... ..+ ..+.||.++.|+++
T Consensus 96 ---vqidlLqcdild-le~--~~g~fDtaviNppF 124 (185)
T KOG3420|consen 96 ---VQIDLLQCDILD-LEL--KGGIFDTAVINPPF 124 (185)
T ss_pred ---hhhheeeeeccc-hhc--cCCeEeeEEecCCC
Confidence 256888888332 233 56888999999886
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-07 Score=66.62 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=91.1
Q ss_pred cccccccccCc--cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 18 YRIKSRQIGYG--ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 18 y~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
|....++.+.+ -+.+.-.+.+.+-.++...--.+.++||+.+|||.++..++.+.. .+++.||.+..++...++++
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHH
Confidence 44444444443 222333345555555542114578999999999999999987753 38999999999999999998
Q ss_pred hccCccccCCCceEEEEcccccccccCCC-CCCeeEEEecCChHH-HH----H--H--HHhcccCCcEEEEEecCC
Q psy10573 96 DKGNSELLDQGRVQFVAYFWLRHLLLTNP-HGSTRVIQSCWTKEE-YN----S--W--LLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~D~i~~~~~~~~-~~----~--~--~~~~L~~gG~l~~~~~~~ 161 (206)
...+. ..+.+++..|......- .. .+.||+|+.+++++. +. . . -...|+|+|.+++.....
T Consensus 87 ~~l~~----~~~~~~~~~da~~~L~~-~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 87 KALGL----EGEARVLRNDALRALKQ-LGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhCC----ccceEEEeecHHHHHHh-cCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 87332 25788888883322111 12 224899999999863 11 1 1 235699999999887754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-07 Score=63.50 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=67.5
Q ss_pred CCCeEEEEcccCch-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~-~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+.+++|+|||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+...- -...+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~--~y~~a 78 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLE--IYKNA 78 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHH--HHhcC
Confidence 45789999999996 77677653 34999999999998888764 357788884332221 13556
Q ss_pred eEEEecCChHHHHHHHHhccc-CCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEEYNSWLLDQLV-PGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~~~~ 162 (206)
|+|++.-+...+...+.++.+ -|.-+++...+..
T Consensus 79 ~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 79 KLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 999998887766655555543 4667777766655
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=72.94 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=74.9
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.||++ ....+...+++... +.++..|||||+|.|.++..+++... +|+++|+++.++...++.+.. .
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~ 75 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------Y 75 (259)
T ss_pred cccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------c
Confidence 45655 55778888888887 77799999999999999999998764 899999999999999998753 3
Q ss_pred CceEEEEcccccccccCCCCC-CeeEEEecCCh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHG-STRVIQSCWTK 137 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~-~~D~i~~~~~~ 137 (206)
.+++++.+|+.. ..+ +.. .++.|++|-+.
T Consensus 76 ~n~~vi~~DaLk-~d~--~~l~~~~~vVaNlPY 105 (259)
T COG0030 76 DNLTVINGDALK-FDF--PSLAQPYKVVANLPY 105 (259)
T ss_pred cceEEEeCchhc-Ccc--hhhcCCCEEEEcCCC
Confidence 589999999332 122 221 45888887764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=71.21 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=60.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+.. ..+...|-|+|||.+.++..+... -.|+..|+.+ .+-.++.+| .
T Consensus 60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva--------------------~n~~Vtacd-i 113 (219)
T PF05148_consen 60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVA--------------------PNPRVTACD-I 113 (219)
T ss_dssp HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS---------------------SSTTEEES--T
T ss_pred HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccC----ceEEEeeccC--------------------CCCCEEEec-C
Confidence 5667777763 455689999999999998655322 2799999754 122466788 4
Q ss_pred cccccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...|+ +++++|+++....+ ..++.++.|+||+||.+.+.-.
T Consensus 114 a~vPL--~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 114 ANVPL--EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp TS-S----TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcC--CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEe
Confidence 56666 89999999887654 5688999999999999988744
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-07 Score=67.33 Aligned_cols=98 Identities=24% Similarity=0.229 Sum_probs=76.7
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+|+|.|.-+..++-.. |..+++.+|....-+...+..... .+..|++++.+...+ .. ..++||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~--~~--~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAEE--PE--YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HHH--TT--TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeecc--cc--cCCCccEEE
Confidence 89999999999999888666 788999999999887777777766 344689999988433 22 577889999
Q ss_pred ecCC--hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 133 SCWT--KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 133 ~~~~--~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+-+. +..+++.+...+++||.+++.-..
T Consensus 121 aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 121 ARAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp EESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred eehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9765 456888999999999999887554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=76.85 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=77.9
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+.+|||+.||+|..++.++...+...+|+++|+++.+++.+++++..++ ..++.++..|....... ....||+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~--~~~~fDv 117 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRY--RNRKFHV 117 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHH--hCCCCCE
Confidence 3689999999999999998764222489999999999999999998743 34688888884332222 2356799
Q ss_pred EEecCCh--HHHHHHHHhcccCCcEEEEEe
Q psy10573 131 IQSCWTK--EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 131 i~~~~~~--~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|..++.- ..+++.+.+.++++|+++++.
T Consensus 118 IdlDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 118 IDIDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEeCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 9998732 257788899999999999884
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=78.32 Aligned_cols=97 Identities=22% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 51 GARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+..|+|+|||+|-++...++.. +...+||+||-++.+....++....++. ..+|+++.+|..+ ... +..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~-v~l---pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMRE-VEL---PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTT-SCH---SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccC-CCC---CCc
Confidence 5789999999999987765532 2345999999999888777766444221 3579999999322 221 336
Q ss_pred eeEEEecCC--------hHHHHHHHHhcccCCcEEE
Q psy10573 128 TRVIQSCWT--------KEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 128 ~D~i~~~~~--------~~~~~~~~~~~L~~gG~l~ 155 (206)
+|+|++-.. .+..+....+.|+|||+++
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 799988432 3456677888999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=74.03 Aligned_cols=107 Identities=24% Similarity=0.236 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+|..|+|.-||.|.++..+++...+ .|+++|++|++++..++++..|+.+ ..+..+.+|.....+ .-+.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~---~~~~ 256 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAP---ELGV 256 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhh---cccc
Confidence 567999999999999999999986533 4999999999999999999985543 348899999433222 1166
Q ss_pred eeEEEecCCh--HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 128 TRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 128 ~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
+|-|+++.+. ++++....+.+++||++-........
T Consensus 257 aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 257 ADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 7999998775 66888899999999999888776653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.4e-07 Score=71.76 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=79.4
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCch----HHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~----~~~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
.+-..++=.+.....+.+.+... .+..+|+..||++|. +++.+.+..+ ...+|+|+|+|+.+++.|++-.-.
T Consensus 91 ineT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 33344444455555555544322 234799999999993 3333344322 135899999999999999876311
Q ss_pred cC--------------------------ccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHH
Q psy10573 98 GN--------------------------SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSW 143 (206)
Q Consensus 98 ~~--------------------------~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~ 143 (206)
.. ........++|...|.... ++ -+.+.||+|+|...+ ..+++.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~-~~~~~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK-QW-AVPGPFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC-CC-ccCCCcceeeHhhHHhcCCHHHHHHHHHH
Confidence 00 0000113467777774331 22 025788999997665 237789
Q ss_pred HHhcccCCcEEEEE
Q psy10573 144 LLDQLVPGGRMVMP 157 (206)
Q Consensus 144 ~~~~L~~gG~l~~~ 157 (206)
+.+.|+|||.+++-
T Consensus 248 l~~~L~pgG~L~lG 261 (287)
T PRK10611 248 FVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHhCCCcEEEEe
Confidence 99999999988664
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=68.94 Aligned_cols=77 Identities=18% Similarity=0.075 Sum_probs=53.5
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC-eeEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS-TRVI 131 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-~D~i 131 (206)
.|+|+.||.|+.+..+++... +|+++|+++..++.++.+++..+. ..+++++.+|+.+.... +.... +|+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~-~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKR-LKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGG-B------SEE
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhh-ccccccccEE
Confidence 689999999999999998763 899999999999999999988432 36899999995443321 12222 6999
Q ss_pred EecCCh
Q psy10573 132 QSCWTK 137 (206)
Q Consensus 132 ~~~~~~ 137 (206)
++++++
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998774
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=71.32 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+.-.+.+.+.+..+.-..++|||||.|.....+.... -.+++-+|.|-.+++.++..-.. .-.+....+|
T Consensus 58 ig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp-------~i~~~~~v~D- 127 (325)
T KOG2940|consen 58 IGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDP-------SIETSYFVGD- 127 (325)
T ss_pred HHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCC-------ceEEEEEecc-
Confidence 3444555554444556789999999999999986542 34899999999999999764221 1134555667
Q ss_pred ccccccCCCCCCeeEEEecCChHHH------HHHHHhcccCCcEEEEEecCCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEY------NSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~------~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
.+..+| .++++|+|+....+|+. ..+|...|||+|.|+.+..++..
T Consensus 128 EE~Ldf--~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 128 EEFLDF--KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhcccc--cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 666777 99999999998888763 36788899999999999887653
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=64.97 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhc-cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 35 ~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
.+.+.++.-|.. .++++.+||-+|+.+|+...+++...+ .+.+|++|.|+......-..+.+ .+|+--+.+
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence 345555555542 368999999999999999999999885 78999999999876665555543 357777788
Q ss_pred ccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+.....|..-=+..|+|+.+-.-+. +..++...|++||.+++..-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 84333333111245799998766543 45777888999997766543
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.9e-07 Score=68.70 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=76.8
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
...||++ ..|.+...+++... ++++..|||+|.|||.++..+.+... +|+++|+++.++....++.....
T Consensus 34 kd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp---- 104 (315)
T KOG0820|consen 34 KDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTP---- 104 (315)
T ss_pred cccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCC----
Confidence 3456777 44777888888776 89999999999999999999988653 99999999999999999887622
Q ss_pred CCCceEEEEcccccc-cccCCCCCCeeEEEecCCh
Q psy10573 104 DQGRVQFVAYFWLRH-LLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~-~~~~~~~~~~D~i~~~~~~ 137 (206)
.....+++.+|+... .++ ||.++.+.+.
T Consensus 105 ~~~kLqV~~gD~lK~d~P~------fd~cVsNlPy 133 (315)
T KOG0820|consen 105 KSGKLQVLHGDFLKTDLPR------FDGCVSNLPY 133 (315)
T ss_pred ccceeeEEecccccCCCcc------cceeeccCCc
Confidence 135789999994332 232 5999987664
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-07 Score=71.66 Aligned_cols=135 Identities=24% Similarity=0.227 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.+..|||+|||+|.++...+.... .+||++|.|+ +.+.|++..+.+++ ..+|++|.+. .+...+ +++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~----~~rItVI~GK-iEdieL---PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNL----ADRITVIPGK-IEDIEL---PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehhH-HHHHHHHHHhcCCc----cceEEEccCc-cccccC---chhc
Confidence 3578899999999999988877643 3999999765 88899888776432 4689999887 333333 4556
Q ss_pred eEEEecCChHH-----HH---HHHHhcccCCcEEEEEecCCC-----CCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 129 RVIQSCWTKEE-----YN---SWLLDQLVPGGRMVMPVGEPF-----KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 129 D~i~~~~~~~~-----~~---~~~~~~L~~gG~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
|+||+.+.-.- ++ -..++.|+|.|.++-+..... +++...... .....|.+ ...+++...|+.+.
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~-nkAnFWyQ-q~fyGVdLt~L~g~ 322 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQF-NKANFWYQ-QNFYGVDLTPLYGS 322 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHH-hhhhhhhh-hccccccchhhhhh
Confidence 99999766321 22 234689999998764433211 000000000 01234566 67777777777655
Q ss_pred c
Q psy10573 196 R 196 (206)
Q Consensus 196 ~ 196 (206)
.
T Consensus 323 a 323 (517)
T KOG1500|consen 323 A 323 (517)
T ss_pred h
Confidence 3
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=68.30 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=78.8
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.||++ ..+.+...+++.+. +.++..|||+|+|.|.++..+++.. .+++++|+++...+..++.+.. .
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~ 75 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------N 75 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------C
T ss_pred CCcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------c
Confidence 45555 56889999999997 6789999999999999999999876 3999999999999999987752 3
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCChH---HHHHHHHh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLD 146 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~ 146 (206)
++++++.+|...........+....|+.+.+.. .++.++..
T Consensus 76 ~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 76 PNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred ccceeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 689999999433222200123446777776652 24444444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=66.35 Aligned_cols=107 Identities=19% Similarity=0.108 Sum_probs=62.5
Q ss_pred CCCeEEEEcccCch----HHHHHHHHhC---C-CceEEEEeCCHHHHHHHHHhhhc-cCcc---------------c---
Q psy10573 50 PGARILDIGSGSGY----LTACLAYMAG---P-EGRVYGVEHVMELAESSIKNIDK-GNSE---------------L--- 102 (206)
Q Consensus 50 ~~~~vLDlG~G~G~----~~~~l~~~~~---~-~~~v~~iD~s~~~~~~a~~~~~~-~~~~---------------~--- 102 (206)
+..+|+.+||++|. +++.+..... + ..+|+|+|+|+.+++.|++-.-. .... .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 3333333211 1 46899999999999998764421 0000 0
Q ss_pred ----cCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 103 ----LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 103 ----~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....++|...|..+ ... +.+.||+|+|-.++ ..+++.+.+.|+|||.|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~--~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDP--PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCC-CCc--ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 011356777777444 222 46788999998886 3477999999999999987533
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-06 Score=64.71 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.|. +.++...+|..-|.|+.+..++..+++.++++++|.++.+++.|++.+.... .+++++.
T Consensus 8 ipVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~ 79 (314)
T COG0275 8 IPVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVH 79 (314)
T ss_pred cchHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEe
Confidence 3678888999998 8899999999999999999999999777899999999999999999986522 5788888
Q ss_pred ccccccccc--CCCCCCeeEEEec
Q psy10573 113 YFWLRHLLL--TNPHGSTRVIQSC 134 (206)
Q Consensus 113 ~d~~~~~~~--~~~~~~~D~i~~~ 134 (206)
.++.+.... ...-+++|-|+.+
T Consensus 80 ~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 80 GNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred CcHHHHHHHHHhcCCCceeEEEEe
Confidence 873221110 1133466766554
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-06 Score=67.73 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+...+||-+|.|.|--.+.+.+.- ...+++-+|.+|.+++.++++. +..+-.....++++++..|..+-..- ..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--AAD 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--hcc
Confidence 455789999999999999998753 2559999999999999999443 33222224568899999993322222 344
Q ss_pred CeeEEEecCChHH-----------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKEE-----------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.||+||++..-+. +-..+.+.|+++|++++...++.
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 6799999766432 33566788999999998877654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-06 Score=73.47 Aligned_cols=124 Identities=22% Similarity=0.160 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhC-------------------------------------
Q psy10573 32 SSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAG------------------------------------- 73 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~------------------------------------- 73 (206)
..+.+.+.++.... . .++..++|.+||+|++.+..+....
T Consensus 173 l~etlAaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 173 LKENLAAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CcHHHHHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34556666665443 4 5678999999999999988765310
Q ss_pred ----CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH----------H
Q psy10573 74 ----PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE----------E 139 (206)
Q Consensus 74 ----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~----------~ 139 (206)
...+++|+|+++.+++.|++++...+.+ ..+++..+|+.+.... ...+++|+|++|++.- .
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~----~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~ 325 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVA----ELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIA 325 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHH
Confidence 1236899999999999999999885432 4588999994332111 1345789999998851 1
Q ss_pred HHHHH---HhcccCCcEEEEEecCCC
Q psy10573 140 YNSWL---LDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 140 ~~~~~---~~~L~~gG~l~~~~~~~~ 162 (206)
+...+ .+...+|+.+++.+....
T Consensus 326 lY~~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 326 LYSQLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence 22222 333348888877776543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=67.49 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~-a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+||+|||+|.++..+++.. ..+++++|+++.++.. .+++..... ....|++. .++.+ ... .-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~---~~~~ni~~--~~~~~-~~~--d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKV---LERTNIRY--VTPAD-IFP--DFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeE---eecCCccc--CCHhH-cCC--Ccee
Confidence 467899999999999999998862 2489999999977665 322211000 01122221 11111 111 1135
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+|++++.... ++..+.+.|++ |.+++-
T Consensus 144 ~DvsfiS~~~--~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 144 FDVSFISLIS--ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeEEEeehHh--HHHHHHHHhCc-CeEEEE
Confidence 6877765443 67788899999 766544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=64.06 Aligned_cols=97 Identities=24% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc---ccc-C-CC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH---LLL-T-NP 124 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-~-~~ 124 (206)
++.++||+||++|+++..+.+..++.++++++|+.+. . ..+++.++++|..+. ..+ . ++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~----------~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D----------PLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G----------S-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------c----------cccceeeeecccchhhHHHhhhhhcc
Confidence 3489999999999999999987755679999999875 0 013455555552111 000 0 12
Q ss_pred --CCCeeEEEecCCh-----------H------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 125 --HGSTRVIQSCWTK-----------E------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 125 --~~~~D~i~~~~~~-----------~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+.+|+|+++... . ..+.-+.+.|++||.+++-+....
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 2688999998832 1 122455677999999999887754
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-06 Score=67.41 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=78.0
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE--
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-- 110 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~-- 110 (206)
+.......+...+.++..++|+|||+|.-+..+++.+. ....++.+|+|.+.++.+.+.+.. ...+.+.+
T Consensus 62 iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-----~~~p~l~v~~ 136 (319)
T TIGR03439 62 ILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-----GNFSHVRCAG 136 (319)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-----ccCCCeEEEE
Confidence 34444444444567888999999999999888876653 235789999999999999998872 12345555
Q ss_pred EEcccccccccCCC----CCCeeEEEecC------Ch---HHHHHHHHh-cccCCcEEEEEecC
Q psy10573 111 VAYFWLRHLLLTNP----HGSTRVIQSCW------TK---EEYNSWLLD-QLVPGGRMVMPVGE 160 (206)
Q Consensus 111 ~~~d~~~~~~~~~~----~~~~D~i~~~~------~~---~~~~~~~~~-~L~~gG~l~~~~~~ 160 (206)
+.+|+.....+ ++ .+...+++.-. .. ..+++.+.+ .|+|||.+++-+-.
T Consensus 137 l~gdy~~~l~~-l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 137 LLGTYDDGLAW-LKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred EEecHHHHHhh-cccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 67774332111 01 12335554422 22 236788888 99999999886553
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-06 Score=63.30 Aligned_cols=122 Identities=22% Similarity=0.302 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC--cc--ccCCCce
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN--SE--LLDQGRV 108 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~--~~~~~~i 108 (206)
.+.....+++.+. +.++...+|||||.|.....++...+ -.+.+|||+.+...+.|+....... .. .....++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4556666777776 78899999999999999988876653 2269999999998888776554311 00 0123578
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCCh--HH---HHHHHHhcccCCcEEEEE
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTK--EE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--~~---~~~~~~~~L~~gG~l~~~ 157 (206)
++..+|+.+......-=...|+|+++..+ +. -+.+....||+|.+++..
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 88888843221100000223999997654 12 224555677888877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=66.88 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=77.2
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+++|+.+||-+|+++|+....+....+|.+-||++|.|...-...-.-... .+|+--|..|..-...|...=+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeeee
Confidence 479999999999999999999999999999999999988653333322211 2566666677433333433345
Q ss_pred CeeEEEecCChHH----HHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..|+|+++.+-+. +.-+....|++||-++++.-.
T Consensus 226 mVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 7899999876543 223556789999999988553
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=63.84 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=94.5
Q ss_pred ccccccccccc-cCccccccccccCccccCcH-HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEE
Q psy10573 4 VDRKNFFTRVV-NEPYRIKSRQIGYGADISSP-HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81 (206)
Q Consensus 4 ~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~i 81 (206)
+|.++|+.... +..+.|+.++++....-... ..+...... ....-.+.|||||-|.+...++..+ |...+.|.
T Consensus 16 ~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~----~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGm 90 (249)
T KOG3115|consen 16 LPQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRA----LNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGM 90 (249)
T ss_pred CcHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhh----ccccceEEeeccCccchhhhccccC-ccceeeee
Confidence 45666766555 88889999988866443222 122222222 2344678999999999999999887 77799999
Q ss_pred eCCHHHHHHHHHhhhcc--CccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHH
Q psy10573 82 EHVMELAESSIKNIDKG--NSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLL 145 (206)
Q Consensus 82 D~s~~~~~~a~~~~~~~--~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~ 145 (206)
||--.+.+..+++.... .......+|+.+.+.+.....+-.+..+..+-.+...+- .+++.+..
T Consensus 91 EIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eya 170 (249)
T KOG3115|consen 91 EIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYA 170 (249)
T ss_pred hhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHH
Confidence 99888888877777641 111122567888887733333311133333322222221 23556677
Q ss_pred hcccCCcEEEEEec
Q psy10573 146 DQLVPGGRMVMPVG 159 (206)
Q Consensus 146 ~~L~~gG~l~~~~~ 159 (206)
-+|++||.++..+-
T Consensus 171 y~l~~gg~~ytitD 184 (249)
T KOG3115|consen 171 YVLREGGILYTITD 184 (249)
T ss_pred hhhhcCceEEEEee
Confidence 78999999987764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.2e-06 Score=64.96 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=68.5
Q ss_pred CCeEEEEcccCc----hHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhc-----cCccc---------c-----
Q psy10573 51 GARILDIGSGSG----YLTACLAYMAG----PEGRVYGVEHVMELAESSIKNIDK-----GNSEL---------L----- 103 (206)
Q Consensus 51 ~~~vLDlG~G~G----~~~~~l~~~~~----~~~~v~~iD~s~~~~~~a~~~~~~-----~~~~~---------~----- 103 (206)
..+|+-+||+|| ..++.+.+..+ ...+|+++|+|..+++.|+.-.-. .+... .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 679999999999 34444455442 257999999999999998754322 01000 0
Q ss_pred -----CCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEE
Q psy10573 104 -----DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 104 -----~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~ 157 (206)
....|.|...|.....+ ..+.||+|+|-.++ ..+++.+...|+|||.+++=
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 01234555555222221 24568999997775 45889999999999998764
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=67.15 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.|. ..++...+|..-|.|+++..+++..+ .++++++|.++.+++.+++++... ..++.++.
T Consensus 5 ~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~ 75 (310)
T PF01795_consen 5 IPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIH 75 (310)
T ss_dssp --TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEE
T ss_pred ecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEe
Confidence 3667888999997 78899999999999999999998884 489999999999999999888642 35788998
Q ss_pred ccccccccc--CC-CCCCeeEEEecCC
Q psy10573 113 YFWLRHLLL--TN-PHGSTRVIQSCWT 136 (206)
Q Consensus 113 ~d~~~~~~~--~~-~~~~~D~i~~~~~ 136 (206)
+++.+...+ .. .-..+|-|+.+.+
T Consensus 76 ~~F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 76 GNFSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp S-GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred ccHHHHHHHHHHccCCCccCEEEEccc
Confidence 884332111 01 2346788877644
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-06 Score=71.37 Aligned_cols=115 Identities=19% Similarity=0.093 Sum_probs=75.7
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
++.-+-+++. +..+..++|+.||||.++..+++... +|+|||++++++..|++++.. ++..|.+|+.+-.
T Consensus 371 Lys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~-----NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 371 LYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQI-----NGISNATFIVGQA 440 (534)
T ss_pred HHHHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchh-----cCccceeeeecch
Confidence 4444455554 67889999999999999999998664 999999999999999999988 4567999999831
Q ss_pred ccccc--cCCCCCCee-EEEecCC---hHHHHHHHHhccc-CCcEEEEEecC
Q psy10573 116 LRHLL--LTNPHGSTR-VIQSCWT---KEEYNSWLLDQLV-PGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~--~~~~~~~~D-~i~~~~~---~~~~~~~~~~~L~-~gG~l~~~~~~ 160 (206)
.+..+ +...-++-+ +++++++ +|..+-+..+..+ +--.+++++..
T Consensus 441 E~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 441 EDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred hhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCH
Confidence 21111 100112225 5566655 4443333344444 55555555443
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.5e-06 Score=68.00 Aligned_cols=107 Identities=20% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--cccCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH--LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 125 (206)
.+++.+|||.++..|.=+.+++......+.|++.|.+...+...++++.+ .+..+.-+...|..+. ..+ +.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-----lGv~ntiv~n~D~~ef~~~~~--~~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-----LGVTNTIVSNYDGREFPEKEF--PG 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-----hCCCceEEEccCccccccccc--Cc
Confidence 57899999999999999999988877788999999999999999999987 4455666666662221 223 44
Q ss_pred CCeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||-|..++++ .+++.....++++||+|+.++++..
T Consensus 312 -~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 312 -SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred -ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 89999998775 1255677889999999999999865
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-05 Score=64.20 Aligned_cols=121 Identities=22% Similarity=0.180 Sum_probs=84.6
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC---C----------------------------Cc----
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---P----------------------------EG---- 76 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~----------------------------~~---- 76 (206)
....+.+.|+.... ..++..++|-=||+|++.+..+-... | .+
T Consensus 175 LketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 175 LKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred chHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 33445555555544 67788999999999999988875542 1 11
Q ss_pred ---eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------HH
Q psy10573 77 ---RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EE 139 (206)
Q Consensus 77 ---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~ 139 (206)
.++|+|+++.+++-|+.|+...+.. ..|.|.++|.....+ +-+.+|+||+|++. ..
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~----d~I~f~~~d~~~l~~---~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVG----DLIEFKQADATDLKE---PLEEYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCC----ceEEEEEcchhhCCC---CCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 3789999999999999999985542 568999999432211 11567999999984 12
Q ss_pred HHHHHHhcccCCcEEEEEecCC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+.+.+.++--+..++++...
T Consensus 326 fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 326 FGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHhcCCceEEEEccHH
Confidence 3355566777667777776553
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.7e-06 Score=64.06 Aligned_cols=95 Identities=19% Similarity=0.097 Sum_probs=68.1
Q ss_pred HHHHHHhhccCCCCC--eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc-cccC---CCceEEE
Q psy10573 38 AQMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-ELLD---QGRVQFV 111 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~--~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~---~~~i~~~ 111 (206)
+.+++++. ++++. +|||+.+|+|..+..++.. +++|+++|.++.+....+..+..... .... ..+++++
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 34555554 56776 9999999999999999875 45899999999999998888876211 1111 1468999
Q ss_pred EcccccccccCCCCCCeeEEEecCChHH
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
.+|......- ...+||+|+.++++++
T Consensus 151 ~~da~~~L~~--~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 151 HASSLTALTD--ITPRPQVVYLDPMFPH 176 (250)
T ss_pred eCcHHHHHhh--CCCCCcEEEECCCCCC
Confidence 9984333221 2236899999999743
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-06 Score=59.79 Aligned_cols=96 Identities=30% Similarity=0.324 Sum_probs=39.0
Q ss_pred EEEcccCchHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCCeeEE
Q psy10573 55 LDIGSGSGYLTACLAYMAGPEG--RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGSTRVI 131 (206)
Q Consensus 55 LDlG~G~G~~~~~l~~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~i 131 (206)
||+|+..|..+..+++...+.. +++++|..+. .+..++.++.. ....+++++.++..+..+ + +.+.+|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~----~~~~~~~~~~g~s~~~l~~~--~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA----GLSDRVEFIQGDSPDFLPSL--PDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------G----GG-BTEEEEES-THHHHHHH--HH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc----CCCCeEEEEEcCcHHHHHHc--CCCCEEEE
Confidence 6899999999998887764443 7999999984 22222222211 112479999999433222 3 35677999
Q ss_pred EecCC-----hHHHHHHHHhcccCCcEEEEE
Q psy10573 132 QSCWT-----KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 132 ~~~~~-----~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+++.. ...-++.+.+.|+|||++++-
T Consensus 74 ~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99876 223557788899999988763
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=61.57 Aligned_cols=100 Identities=23% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+.+++|||+|.|.-+..++-.. |..+++.+|.....+...++...+ .+.+|++++++-..+..+- ... ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~--~~~-~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE--KKQ-YDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc--ccc-CcE
Confidence 6899999999999999988443 777899999998877777776666 3457899998873332220 111 699
Q ss_pred EEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|++-+. +..+.+.+...+++||.+++.-.
T Consensus 139 vtsRAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 139 VTSRAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred EEeehccchHHHHHHHHHhcccCCcchhhhH
Confidence 999765 45677899999999998765544
|
|
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.3e-06 Score=63.31 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+.. ......|-|+|||.+.++. .. ++ .|+.+|+.+ .+-+++.+|.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~--~~-kV~SfDL~a--------------------~~~~V~~cDm- 219 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SE--RH-KVHSFDLVA--------------------VNERVIACDM- 219 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---cc--cc-ceeeeeeec--------------------CCCceeeccc-
Confidence 4556666652 2445789999999988765 11 22 889998743 3456777883
Q ss_pred cccccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...|. ++++.|+++.+..+ ..++.+++++|++||.+++.-.
T Consensus 220 ~~vPl--~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 220 RNVPL--EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cCCcC--ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEeh
Confidence 33666 89999999886554 4577999999999999988644
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=59.40 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccc----c-
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLL----L- 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~----~- 121 (206)
++|+.+|||+||.+|.++..+.+..+|.+.|.|||+-.-. ....++++.+ |..+..- +
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------------p~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------------PPEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------------CCCCcccccccccCCHHHHHHHHH
Confidence 5799999999999999999999999899999999974311 1123445554 3211110 0
Q ss_pred CCCCCCeeEEEecCCh--------H---------HHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 122 TNPHGSTRVIQSCWTK--------E---------EYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~--------~---------~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
.+|+-..|+|+++... + ..+--....+.|+|.++.-++.+..
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 1466677998886542 1 1223335667899999999988763
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.1e-05 Score=59.41 Aligned_cols=108 Identities=17% Similarity=0.022 Sum_probs=78.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..-+||||.||.|.....+....+. ..+|...|.++..++..++..++.+++ .-++|.++|+.+...+.--+-..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCC
Confidence 4578999999999999888877642 248888999999999999999885542 23499999944433331012234
Q ss_pred eEEEecCChH---------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE---------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~---------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++++....+ ..+..+..++.|||.++.+...+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 7887766543 24567788999999998876443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=62.31 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=47.1
Q ss_pred CCeEEEEcccCchH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCceEEEEcccccc--cccCCCCC
Q psy10573 51 GARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVAYFWLRH--LLLTNPHG 126 (206)
Q Consensus 51 ~~~vLDlG~G~G~~-~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~i~~~~~d~~~~--~~~~~~~~ 126 (206)
..++||||+|.... .+..++.. +.+++|+|+++..++.|+++...+ .+ ..+|+++...-... .....+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e 176 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNE 176 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccc
Confidence 45799999997544 34334433 579999999999999999999985 43 36788876641111 11112456
Q ss_pred CeeEEEecCChHHHH
Q psy10573 127 STRVIQSCWTKEEYN 141 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~ 141 (206)
.||+++|+++++.-.
T Consensus 177 ~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -EEEEEE-----SS-
T ss_pred eeeEEecCCccccCh
Confidence 899999999987533
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-05 Score=54.81 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=55.8
Q ss_pred eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh---------------HHHH
Q psy10573 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------------EEYN 141 (206)
Q Consensus 77 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------------~~~~ 141 (206)
+|+++|+.+++++.+++++.+.... .+++++..+-.....+ ++.+.+|+++.|.+. -..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHENLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHHHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 5899999999999999999984432 4799999872222222 244578999988663 1255
Q ss_pred HHHHhcccCCcEEEEEecCCC
Q psy10573 142 SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 142 ~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+.+.|+|||++.+.++.+.
T Consensus 76 ~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHhhccCCEEEEEEeCCC
Confidence 888999999999999999765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=59.31 Aligned_cols=91 Identities=19% Similarity=0.125 Sum_probs=68.1
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
..+.|+|+|+|.++...++... +|+++|.+|.....+++++.. .+..|+.++.+|.. .-.| +..|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v-----~g~~n~evv~gDA~-~y~f----e~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHV-----PGDVNWEVVVGDAR-DYDF----ENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCC-----CCCcceEEEecccc-cccc----ccccee
Confidence 7889999999999998887653 999999999999999998755 44678999999932 2222 233888
Q ss_pred EecCChH--------HHHHHHHhcccCCcEEE
Q psy10573 132 QSCWTKE--------EYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 132 ~~~~~~~--------~~~~~~~~~L~~gG~l~ 155 (206)
+|-..-. .+++.+.+.|+.++.++
T Consensus 101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 8743321 24467777788777765
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=56.25 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=46.4
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.++|+|||.|.++..+++.. +.++++++|+++.+.+.+++++..++ ..+++++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEee
Confidence 37999999999999988765 66689999999999999999987632 3457777766
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=62.73 Aligned_cols=129 Identities=19% Similarity=0.147 Sum_probs=91.9
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
.|+.++...+...+++.+. ..+..+|+|-.||+|++.....+.++. ...++|.|+++.....|+.++--++.+
T Consensus 165 ~GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~-- 240 (489)
T COG0286 165 AGEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE-- 240 (489)
T ss_pred CCccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--
Confidence 3788888888888888887 467789999999999998888777642 367899999999999999998764432
Q ss_pred CCCceEEEEccccccccc--CCCCCCeeEEEecCChH-------------------------------HHHHHHHhcccC
Q psy10573 104 DQGRVQFVAYFWLRHLLL--TNPHGSTRVIQSCWTKE-------------------------------EYNSWLLDQLVP 150 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~--~~~~~~~D~i~~~~~~~-------------------------------~~~~~~~~~L~~ 150 (206)
. ++....+|....... ....+.||.|++++++- ..++.+...|+|
T Consensus 241 -~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 -G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred -c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 1 345555551111111 11346689988887752 134778889999
Q ss_pred CcEEEEEecCC
Q psy10573 151 GGRMVMPVGEP 161 (206)
Q Consensus 151 gG~l~~~~~~~ 161 (206)
+|+..+..+.+
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88776666654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-06 Score=70.17 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=60.4
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEE-----eCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCC
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGV-----EHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHG 126 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~i-----D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~ 126 (206)
.+||+|||+|.++..+..+ .|+.+ |..+..++.|.++- +..+.+- .....+| +++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG------------vpa~~~~~~s~rLPf--p~~ 180 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG------------VPAMIGVLGSQRLPF--PSN 180 (506)
T ss_pred EEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC------------cchhhhhhccccccC--Ccc
Confidence 5799999999999999864 34433 34444455554321 2111111 1345778 999
Q ss_pred CeeEEEecCChH-------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKE-------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~-------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|-|..... -++-++.++|+|||.++.+.+...
T Consensus 181 ~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 181 AFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 999997754432 145678999999999999877654
|
; GO: 0008168 methyltransferase activity |
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00021 Score=53.99 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=79.8
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+.....+++. .+|.+||++|-|-|.....+.+.- |. +=+.||..+++++..+..... ...|+-...+-|
T Consensus 90 iMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~-p~-~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~W 158 (271)
T KOG1709|consen 90 IMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAP-PD-EHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRW 158 (271)
T ss_pred HHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcC-Cc-ceEEEecCHHHHHHHHhcccc------cccceEEEecch
Confidence 3444444443 778999999999999988887653 43 667899999999999876543 224666666666
Q ss_pred ccccccCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEE
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+..+ +++++.||-|+-+.-- .++.+.+-++|||+|.+-..
T Consensus 159 eDvl~-~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 159 EDVLN-TLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred Hhhhc-cccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 55544 4689999999886542 23557889999999988554
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.9e-05 Score=58.64 Aligned_cols=79 Identities=15% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc---ccccCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR---HLLLTNPHG 126 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~ 126 (206)
....|+|.-||-|+.+..++... +.|++||+++.-+..|+.+++..+.+ .+++|+++|+.+ ...+ ...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~~~lq~--~K~ 164 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLASKLKA--DKI 164 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHHHHHhh--hhh
Confidence 66789999999999998888765 38999999999999999999885532 489999999432 2333 444
Q ss_pred CeeEEEecCCh
Q psy10573 127 STRVIQSCWTK 137 (206)
Q Consensus 127 ~~D~i~~~~~~ 137 (206)
.+|+|+..+++
T Consensus 165 ~~~~vf~sppw 175 (263)
T KOG2730|consen 165 KYDCVFLSPPW 175 (263)
T ss_pred eeeeeecCCCC
Confidence 56788876664
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=60.30 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=79.9
Q ss_pred hhccCCCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC
Q psy10573 44 LKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT 122 (206)
Q Consensus 44 l~~~~~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 122 (206)
+..++.+.. +++.+|||+..++..+.+.+.. .|+.+|+|+..++........ ..+...+...| .....|
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d-~~~l~f- 110 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMD-MDQLVF- 110 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhcccc------CCcceEEEEec-chhccC-
Confidence 333456666 9999999999998888765433 899999999988888765432 13567888888 555667
Q ss_pred CCCCCeeEEEecCChHH----------------HHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEE----------------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~----------------~~~~~~~~L~~gG~l~~~~~ 159 (206)
++++||+|+.-+.+++ .+.++.+++++||+.+..+.
T Consensus 111 -edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 111 -EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred -CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9999999988666533 34788999999999887776
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=56.85 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCeEEEEcccCc-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh-ccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 51 GARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNID-KGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G-~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
+.+|+=||||.= ..+..+++..+++..++++|+++++.+.+++... ..+ ...++.|+.+|... ... .-..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~-~~~--dl~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLD-VTY--DLKEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGG-G-G--G----
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhc-ccc--ccccC
Confidence 369999999974 4455556555566789999999999999998776 211 13579999999322 111 22456
Q ss_pred eEEEecCCh-------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK-------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~-------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+..... ..+++.+.+.++||+.+++-...+
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 999887654 358899999999999988875543
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.3e-05 Score=60.69 Aligned_cols=90 Identities=20% Similarity=0.315 Sum_probs=68.6
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
...+|+|.|.|..+..+...+ | ++-+++.+...+..++..+. +.+..+.+|..... |.+ |+|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~----P~~--daI 240 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDT----PKG--DAI 240 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceecccccccC----CCc--CeE
Confidence 678999999999999998865 5 68888888877777766552 23677777732222 444 699
Q ss_pred EecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 132 QSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 132 ~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++.+.++ +++++|++.|+|+|.+++.-.
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 8877764 478999999999999988755
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00026 Score=56.34 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
...+|||+|||+|..+..+....+...+++.+|.|+.+++.++..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 457999999999988877776664445889999999999999887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.1e-05 Score=58.98 Aligned_cols=87 Identities=25% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCCC--CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc----CCCceEEEEccccccccc
Q psy10573 48 IKPG--ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----DQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 48 ~~~~--~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~ 121 (206)
++++ .+|||..+|.|..+..++.. | ++|+++|.|+.+....+.-+.....+.. ...+++++.+|..+....
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 4555 48999999999999998853 3 5999999999876666554443111100 114799999995544443
Q ss_pred CCCCCCeeEEEecCChHH
Q psy10573 122 TNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~ 139 (206)
++.+||+|+.++++++
T Consensus 148 --~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 --PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp --HSS--SEEEE--S---
T ss_pred --cCCCCCEEEECCCCCC
Confidence 6788999999999854
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00054 Score=48.50 Aligned_cols=101 Identities=30% Similarity=0.314 Sum_probs=66.9
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCCC-CCeeEE
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNPH-GSTRVI 131 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~-~~~D~i 131 (206)
++|+|||+|... .+.........++++|+++.++..++..... .. ...+.+...|... ..++ .. ..+|++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~--~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG----LGLVDFVVADALGGVLPF--EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----CCceEEEEeccccCCCCC--CCCCceeEE
Confidence 999999999977 3333321113788999999988885544321 10 0115677777333 2444 45 478999
Q ss_pred EecCCh-----HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 132 QSCWTK-----EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 132 ~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
...... ...+..+.+.++|+|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444432 5677899999999999988877654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.6e-05 Score=59.18 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=78.8
Q ss_pred cCccccccccccCcccc---CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHH-HHHHHHhCCCceEEEEeCCHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADI---SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAES 90 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~-~~l~~~~~~~~~v~~iD~s~~~~~~ 90 (206)
..+|.+..+..+.+... ........+.+.+...-..+.++||+|||+-... ..+.+... +|+..|.++.-++.
T Consensus 18 P~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~e 94 (256)
T PF01234_consen 18 PRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREE 94 (256)
T ss_dssp HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHH
T ss_pred HHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHH
Confidence 44455555544333221 1122333344444322235678999999985443 22233332 89999999988887
Q ss_pred HHHhhhccCc-cc------------cC----------CCce-EEEEcccccccccCC---CCCCeeEEEecCChHH----
Q psy10573 91 SIKNIDKGNS-EL------------LD----------QGRV-QFVAYFWLRHLLLTN---PHGSTRVIQSCWTKEE---- 139 (206)
Q Consensus 91 a~~~~~~~~~-~~------------~~----------~~~i-~~~~~d~~~~~~~~~---~~~~~D~i~~~~~~~~---- 139 (206)
.++.+..... ++ .. ...| .++..|+.+..++.- .+..+|+|++...++.
T Consensus 95 l~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d 174 (256)
T PF01234_consen 95 LEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKD 174 (256)
T ss_dssp HHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SS
T ss_pred HHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCC
Confidence 7776654211 10 00 0113 466777555554410 1235999999877643
Q ss_pred ------HHHHHHhcccCCcEEEEEecCC
Q psy10573 140 ------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 140 ------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++++.++|||||.|++...-.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 5688899999999999876543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00051 Score=52.25 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=62.6
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC-eeEEE
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS-TRVIQ 132 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-~D~i~ 132 (206)
|.|+||.-|++...|++.. ...+++++|+++..++.|++++...++ ..+++++.+|-.+. + +.+. .|+|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~--l--~~~e~~d~iv 71 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEV--L--KPGEDVDTIV 71 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG------GGG---EEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccc--c--CCCCCCCEEE
Confidence 6899999999999999865 555899999999999999999988443 35799999992221 1 3332 57776
Q ss_pred ecCCh----HHHHHHHHhcccCCcEEEEEecC
Q psy10573 133 SCWTK----EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 133 ~~~~~----~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.++= -.+++.....++....+++...+
T Consensus 72 IAGMGG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 72 IAGMGGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp EEEE-HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred EecCCHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 65542 23444444455544556655443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.2e-05 Score=59.46 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEEccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVAYFWLR 117 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~~ 117 (206)
+..+.+.. ...+..++|+|||.|-.... .|.+.+.+.|++...+.-++.. +. ....+| .-
T Consensus 35 ~v~qfl~~-~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad-~l 95 (293)
T KOG1331|consen 35 MVRQFLDS-QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRAD-AL 95 (293)
T ss_pred HHHHHHhc-cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhh-hh
Confidence 33344432 45589999999999866331 2667899999988888777642 22 456667 44
Q ss_pred ccccCCCCCCeeEEEecCChHH---------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE---------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~---------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..++ ++.+||.++.....++ +++++.+.|+|||..++.++...
T Consensus 96 ~~p~--~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 96 KLPF--REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred cCCC--CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 4666 7889999999888876 55889999999999999888755
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00045 Score=56.24 Aligned_cols=114 Identities=17% Similarity=0.066 Sum_probs=76.8
Q ss_pred hhccCCCCCeEEEEcccCchHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 44 l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
+.-.++|+.+|||+|+..|.-+..+.+.+-. .+.+.+-|.++..+......+.. ...++..+...|......
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~~~p~ 223 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDASLFPN 223 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccceeccc
Confidence 3333789999999999999999888776531 34788889999887777766643 122344444444111000
Q ss_pred c------CCCCCCeeEEEecCChH-----------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 121 L------TNPHGSTRVIQSCWTKE-----------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 121 ~------~~~~~~~D~i~~~~~~~-----------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. ......||-|.++.++. .++....++|++||+++-++.+.+
T Consensus 224 ~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 224 IYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 0 01334679999986641 155677899999999999999866
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00036 Score=49.90 Aligned_cols=64 Identities=34% Similarity=0.490 Sum_probs=47.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+...|+|+|||.|+++..++..+ .+..+|+++|.++...+.+.++....... ...++.++.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccc
Confidence 567899999999999999998733 25679999999999999998887763210 11345555554
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=2e-05 Score=59.06 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=64.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~D 129 (206)
+.++||+|+|.|..+..++..+. +|++.|.|..+....+++ +..++... +.+ -+-++|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~ynVl~~~ew~~------t~~k~d 171 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NYNVLTEIEWLQ------TDVKLD 171 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CCceeeehhhhh------cCceee
Confidence 47899999999999999988775 899999999998888764 22222222 221 111339
Q ss_pred EEEecCChH------HHHHHHHhcccC-CcEEEEEecCC
Q psy10573 130 VIQSCWTKE------EYNSWLLDQLVP-GGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~~~------~~~~~~~~~L~~-gG~l~~~~~~~ 161 (206)
+|.|-..++ .+++.++.+|.| +|++++...-+
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 998865554 377888999998 78887765543
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=58.17 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=82.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHH-------HHHhhhccCccccC
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-------SIKNIDKGNSELLD 104 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~-------a~~~~~~~~~~~~~ 104 (206)
..+.+.--+..+.. ++||..|.|--.|||.+....+... +.|+|.||+-.++.. .+.++...+..
T Consensus 192 mDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~--- 263 (421)
T KOG2671|consen 192 MDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS--- 263 (421)
T ss_pred cchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCc---
Confidence 34444444444444 7999999999999999988887754 399999998877663 34444442211
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCCh---------------------------------------HHHHHHHH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------------------------------------EEYNSWLL 145 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------------------------------------~~~~~~~~ 145 (206)
..-+.+..+|..+..-. ....||.|+|+++. ..+++-..
T Consensus 264 ~~fldvl~~D~sn~~~r--sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss 341 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPPLR--SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS 341 (421)
T ss_pred chhhheeeecccCcchh--hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence 12357777773332222 45677999999883 12456778
Q ss_pred hcccCCcEEEEEecCCC
Q psy10573 146 DQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 146 ~~L~~gG~l~~~~~~~~ 162 (206)
+.|..||++++..+...
T Consensus 342 ~~L~~ggrlv~w~p~~~ 358 (421)
T KOG2671|consen 342 RRLVDGGRLVFWLPTIT 358 (421)
T ss_pred hhhhcCceEEEecCchh
Confidence 89999999999888543
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=59.43 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=79.3
Q ss_pred HHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 41 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
+..+.....++..++|+|||.|....++... ..+.++|++.++..+..+.......... ..-.++..| .-..+
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~----~k~~~~~~~-~~~~~ 173 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLD----NKCNFVVAD-FGKMP 173 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhh----hhcceehhh-hhcCC
Confidence 3444445678889999999999999988765 4468999999998877776665542211 122235555 44466
Q ss_pred cCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 121 LTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
| ++++||.+.+.... ....++++++++|||.++...+.
T Consensus 174 f--edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 174 F--EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred C--CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 7 88899988775443 34779999999999999877654
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00048 Score=52.89 Aligned_cols=96 Identities=23% Similarity=0.136 Sum_probs=62.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE-EEEcccccc--cccCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVAYFWLRH--LLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~--~~~~~~~ 125 (206)
.++..+||+|+.||.++..+++... .+||++|..-..+..- ++. .+++. +...|+... ..+ .
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~-------d~rV~~~E~tN~r~l~~~~~--~- 142 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN-------DPRVIVLERTNVRYLTPEDF--T- 142 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHh---Hhc-------CCcEEEEecCChhhCCHHHc--c-
Confidence 5788999999999999999988643 3999999876544433 221 13333 333342211 112 1
Q ss_pred CCeeEEEecCChH---HHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+..|+++++..+- .++..+..++++++.++.-.-
T Consensus 143 ~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 143 EKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred cCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEec
Confidence 2458999888764 466778889999887765543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00059 Score=55.39 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++..+||+||++|.++..+++.. .+|++||..+- ... +. ..+++.....|.....+ +.+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l-~~~----L~-------~~~~V~h~~~d~fr~~p---~~~~ 270 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPM-AQS----LM-------DTGQVEHLRADGFKFRP---PRKN 270 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhc-CHh----hh-------CCCCEEEEeccCcccCC---CCCC
Confidence 4688999999999999999998854 49999996552 111 11 23678888877222111 1456
Q ss_pred eeEEEecCChH--HHHHHHHhcccCC
Q psy10573 128 TRVIQSCWTKE--EYNSWLLDQLVPG 151 (206)
Q Consensus 128 ~D~i~~~~~~~--~~~~~~~~~L~~g 151 (206)
+|.++++.... .+.+-+.+.|..|
T Consensus 271 vDwvVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 271 VDWLVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred CCEEEEecccCHHHHHHHHHHHHhcC
Confidence 79999987753 3444445555444
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00046 Score=51.42 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.+++|||+|+|+|-.+...++... ..++..|+.+......+-|...++ ..+.+...|... .+..+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g------~~~~~ 143 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG------SPPAF 143 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC------CCcce
Confidence 3578999999999999988876542 378889999988888887776643 357777777321 34456
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEE
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~ 156 (206)
|+++....+. .++. +...|...|..++
T Consensus 144 Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 144 DLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 9998876652 2444 5555555554444
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=54.43 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~ 126 (206)
.++.+|+-+|||+ |.++..+++..+. .+|+.+|.++..++.|++.... ..+..... +.... ...+..+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~-~~~~t~g 236 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAE-ILELTGG 236 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHH-HHHHhCC
Confidence 4445899999997 8888888887753 4999999999999999985432 01111111 10000 0011222
Q ss_pred -CeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 -STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 -~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+|+++-.......++.+.+.++++|.+++.-....
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 579999998888788999999999999988766544
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00086 Score=47.71 Aligned_cols=122 Identities=19% Similarity=0.089 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
...+.++..+. -.+..+.+|+|+|.|......++.. ....+|+|+++..+..++-+.-+.++. ....|.+-|
T Consensus 59 eQv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~----k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCA----KSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcc----cchhhhhhh
Confidence 34444555554 3566799999999999988887653 237799999999999988777664332 456666666
Q ss_pred cccccccCCCCCCeeEEEecC-ChHHHHHHHHhcccCCcEEEEEecCCCCCeeE
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCW-TKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNL 167 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~-~~~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~ 167 (206)
.-+ +.+.+-.+-+|+... .+..+..+++..+..+..++.+-+.-+..+..
T Consensus 131 lwK---~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~w~le 181 (199)
T KOG4058|consen 131 LWK---VDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPTWQLE 181 (199)
T ss_pred hhh---ccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCccchH
Confidence 111 111222223333322 23445577787888899999887776643333
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0022 Score=50.63 Aligned_cols=118 Identities=24% Similarity=0.248 Sum_probs=70.3
Q ss_pred HHHHHHHhhccC------CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc----cCcc-----
Q psy10573 37 HAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK----GNSE----- 101 (206)
Q Consensus 37 ~~~~~~~l~~~~------~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~----~~~~----- 101 (206)
...+++.|.... ....+||--|||.|+++-.++... -.+.|.|.|--|+-...-.+.. +...
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 444455554432 234789999999999999999864 3899999998775544332221 0000
Q ss_pred --------------------------ccCCCceEEEEcccccccccCCCCCCeeEEEecCC---hH---HHHHHHHhccc
Q psy10573 102 --------------------------LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWT---KE---EYNSWLLDQLV 149 (206)
Q Consensus 102 --------------------------~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~---~~---~~~~~~~~~L~ 149 (206)
.....++.+..+|+.+.-.-....+++|+|+...- .+ .+++.+.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 00122455555553322111011468898866432 22 46689999999
Q ss_pred CCcEEEEE
Q psy10573 150 PGGRMVMP 157 (206)
Q Consensus 150 ~gG~l~~~ 157 (206)
|||..|-.
T Consensus 194 pgG~WIN~ 201 (270)
T PF07942_consen 194 PGGYWINF 201 (270)
T ss_pred cCCEEEec
Confidence 99966544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00065 Score=50.58 Aligned_cols=36 Identities=39% Similarity=0.811 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~ 83 (206)
++++..|+|+-.|.|++++.++...++.+.||++-.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p 81 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP 81 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence 589999999999999999999999999999998743
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=48.73 Aligned_cols=82 Identities=32% Similarity=0.313 Sum_probs=62.3
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+..+.++.|+||--+++.+++.+.. +...+++.|+++..++.|.+++..++. ..++++..+|.. .++ .++.
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl--~~l-~~~d 84 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGL--AVL-ELED 84 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCc--ccc-CccC
Confidence 35667779999999999999999876 666889999999999999999987443 367888888821 222 1233
Q ss_pred CeeEEEecCC
Q psy10573 127 STRVIQSCWT 136 (206)
Q Consensus 127 ~~D~i~~~~~ 136 (206)
.+|+|++.++
T Consensus 85 ~~d~ivIAGM 94 (226)
T COG2384 85 EIDVIVIAGM 94 (226)
T ss_pred CcCEEEEeCC
Confidence 5688877655
|
|
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0029 Score=50.78 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-----ccccccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-----WLRHLLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-----~~~~~~~ 121 (206)
++.+.+||-+|+|+ |-.+..+++.++. .+|..+|+++..++.|++ +.. ..+...... ..+...-
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHHh
Confidence 68899999999997 8888888888754 499999999999999998 432 111111111 1110000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+....+|+.+.....+...+.....++.+|.+++..++.+
T Consensus 237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred hccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCC
Confidence 12445579999999999988999999999999777766544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0054 Score=48.29 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=60.5
Q ss_pred CeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCC--CCC
Q psy10573 52 ARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTN--PHG 126 (206)
Q Consensus 52 ~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~--~~~ 126 (206)
...||||||- -..+=.+++...|.++|.-+|.++.++.+++..+..+. ..+..++.+|..+... +.- -.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 5799999993 33444455566689999999999999999999887621 1248999999322111 000 001
Q ss_pred Cee-----EEEecCCh---------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STR-----VIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D-----~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
-+| .++....+ ..++..+.+.|.||+.++++..+..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 112 33333333 3477899999999999999987654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=52.59 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--cccccccCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~~~~~~~ 123 (206)
+.|+.+|+-.|+| .|..+..+++..+ .+|+++|.+++-.+.|++.-++ .++.. | ..+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~---- 226 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAV---- 226 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHh----
Confidence 6889999999888 4567777777665 6999999999999999876443 22221 2 11111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+.+|+|+...+ ...++...+.|+++|++++.-..
T Consensus 227 -~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 227 -KEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -HhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 112699999999 88889999999999999988555
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0018 Score=51.33 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+...++++-+|.|.|...+..+++. .-.++..+|++..+++..++.+..-... ...+++.+..+|-..... ..+.+.
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~-~~~~~~ 195 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLE-DLKENP 195 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHH-HhccCC
Confidence 4567889999999999998887663 4458899999999999999998862221 334688999999222111 125677
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+.+..- ..+...+.+.||++|+++....+
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 7999886442 22557889999999999877654
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0059 Score=46.22 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHH-HHHhhhccCccccCCCce
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~-a~~~~~~~~~~~~~~~~i 108 (206)
.|.....+.+++-+ -.+..|+|+|.-.|+.+..++.. +++.++|+|+|++-..... +.+. . .-.++|
T Consensus 17 ~P~Dm~~~qeli~~--~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~---h----p~~~rI 87 (206)
T PF04989_consen 17 YPQDMVAYQELIWE--LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES---H----PMSPRI 87 (206)
T ss_dssp -HHHHHHHHHHHHH--H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------TTE
T ss_pred CHHHHHHHHHHHHH--hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh---c----cccCce
Confidence 35444444444431 23679999999999888777653 4567899999995433221 1111 0 113689
Q ss_pred EEEEccccccc---ccC--CCCCCeeEEEecCC-----hHHHHHHHHhcccCCcEEEEE
Q psy10573 109 QFVAYFWLRHL---LLT--NPHGSTRVIQSCWT-----KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 109 ~~~~~d~~~~~---~~~--~~~~~~D~i~~~~~-----~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+++++|..+.. ... .......+|+.+.. .-..++.....+++|+++++.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 99999922211 100 11233356666555 122456678899999999875
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=50.18 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 32 SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
++..+...+.+...... .+..++||+||-+......-.. -..|+.||+++. .-.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~--------------------~~~ 86 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ--------------------HPG 86 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCC--------------------CCC
Confidence 55666666666654211 1236999999986554433222 236899998761 122
Q ss_pred EEEcccccc-cccCCCCCCeeEEEecCChH---------HHHHHHHhcccCCcE-----EEEEecC
Q psy10573 110 FVAYFWLRH-LLLTNPHGSTRVIQSCWTKE---------EYNSWLLDQLVPGGR-----MVMPVGE 160 (206)
Q Consensus 110 ~~~~d~~~~-~~~~~~~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~-----l~~~~~~ 160 (206)
+.+.|+.+. .| ..+.++||+|.+...+. .++..+.+.|+++|. +++++|.
T Consensus 87 I~qqDFm~rplp-~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 87 ILQQDFMERPLP-KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred ceeeccccCCCC-CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 344452221 11 12467889998865542 367899999999999 7777664
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0042 Score=48.26 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=60.4
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+...+.+..+|+|||||.--++..+.... +...++++|++..+++.....+...+ .+..+...|..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~ 164 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeee
Confidence 455566666667778999999999988888776443 55699999999999999988877632 35666666732
Q ss_pred cccccCCCCCCeeEEEecCChHH
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
.. .+....|+...--.++.
T Consensus 165 ~~----~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 165 SD----PPKEPADLALLLKTLPC 183 (251)
T ss_dssp TS----HTTSEESEEEEET-HHH
T ss_pred cc----CCCCCcchhhHHHHHHH
Confidence 21 14556699888666554
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.006 Score=50.73 Aligned_cols=106 Identities=18% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.++||.=+|+|.-+...+...+...+|+.-|+++.+++..++++..++.+ ...+.+...|....... ....|
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~~--~~~~f 122 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLYS--RQERF 122 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHCH--STT-E
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhhh--ccccC
Confidence 44579999999999999888877544458899999999999999999885543 12578888883221112 46677
Q ss_pred eEEEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|=.++- ...+++.+.+.++.||.+.++.-
T Consensus 123 D~IDlDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 99966533 33577889999999999988754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.038 Score=42.84 Aligned_cols=104 Identities=17% Similarity=0.054 Sum_probs=57.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.|++||-+|=..-......+ .+...+|+.+|+++..++..++...+.+ .+ ++.+..|+.+..|- --.++|
T Consensus 43 L~gk~il~lGDDDLtSlA~al--~~~~~~I~VvDiDeRll~fI~~~a~~~g-----l~-i~~~~~DlR~~LP~-~~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALAL--TGLPKRITVVDIDERLLDFINRVAEEEG-----LP-IEAVHYDLRDPLPE-ELRGKF 113 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHH--HT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---T-TTSS-B
T ss_pred ccCCEEEEEcCCcHHHHHHHh--hCCCCeEEEEEcCHHHHHHHHHHHHHcC-----Cc-eEEEEecccccCCH-HHhcCC
Confidence 468999999855433332222 2344599999999999999998887733 23 88888896654442 015789
Q ss_pred eEEEecCCh-----HHHHHHHHhcccCCc-EEEEEecCC
Q psy10573 129 RVIQSCWTK-----EEYNSWLLDQLVPGG-RMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~-----~~~~~~~~~~L~~gG-~l~~~~~~~ 161 (206)
|+++.+++. .-++.+....|+..| ..++.....
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 999999884 236678888888655 555544443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00043 Score=49.98 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+.+|+++|.|- |-.+..++... +...|+..|-++..++..++....+... .......+.-+. ...........
T Consensus 28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s--~~tsc~vlrw~~-~~aqsq~eq~t 103 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMAS--SLTSCCVLRWLI-WGAQSQQEQHT 103 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhccccc--ccceehhhHHHH-hhhHHHHhhCc
Confidence 3467899999995 44444445444 6669999999999999888776553211 111221222221 11111124557
Q ss_pred eeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...+ ..+.+.+...|+|.|..++..|-..
T Consensus 104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred ccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 7999997664 2366888999999999777766443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0056 Score=49.03 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.+.++... -.+|..|||..+|+|+.+..+.+.. .+.+|+|++++..+.|++++..
T Consensus 197 L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 344444443 4789999999999999988776543 3899999999999999999864
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0064 Score=46.44 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..+.+.+++.. -.++..|||.-||+|+.+..+.+.. . +.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~-R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELG-R--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcC-C--eEEEEeCCHHHHHHhcC
Confidence 44566666555 4789999999999999988776543 3 89999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=44.52 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcc----CCCCCeEEEEcccCchHHHHH-HHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCc
Q psy10573 34 PHIHAQMLELLKDK----IKPGARILDIGSGSGYLTACL-AYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGR 107 (206)
Q Consensus 34 ~~~~~~~~~~l~~~----~~~~~~vLDlG~G~G~~~~~l-~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~ 107 (206)
......+.++|..- ..++.++||||.|....--.+ ... =+-+.+|.|+++..+..|+.....+ ++ ...
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e--YgwrfvGseid~~sl~sA~~ii~~N~~l----~~~ 131 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE--YGWRFVGSEIDSQSLSSAKAIISANPGL----ERA 131 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee--ecceeecCccCHHHHHHHHHHHHcCcch----hhh
Confidence 34455566665421 235568899998864321111 111 1347788999999999999988774 22 133
Q ss_pred eEEEEcccccccccC--CC-CCCeeEEEecCChHHHHHHH
Q psy10573 108 VQFVAYFWLRHLLLT--NP-HGSTRVIQSCWTKEEYNSWL 144 (206)
Q Consensus 108 i~~~~~d~~~~~~~~--~~-~~~~D~i~~~~~~~~~~~~~ 144 (206)
+.+.... ....-|+ +. .+.||.++||+++|.-.+..
T Consensus 132 I~lr~qk-~~~~if~giig~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 132 IRLRRQK-DSDAIFNGIIGKNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred eeEEecc-CccccccccccccceeeeEecCCCcchhHHHH
Confidence 5555443 1111111 12 56789999999998755433
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0027 Score=51.50 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=63.4
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc-cccccCCC-CCCe
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL-RHLLLTNP-HGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~-~~~~ 128 (206)
.++|||+|.|.|..+..+-.....--.++.+|.|+...++..........+ ...+...|+. +-.++ + ...|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-----~td~r~s~vt~dRl~l--p~ad~y 186 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-----KTDWRASDVTEDRLSL--PAADLY 186 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-----cCCCCCCccchhccCC--Ccccee
Confidence 467999999999887776655533336777898887766665444331111 1122222211 11122 2 3345
Q ss_pred eEEEecCCh---------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++++..-+ ...++.++.++.|||.|+++..+.+
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 777654332 2266889999999999999887755
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.023 Score=46.51 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-+|+|. |..+..+++......+++++|.++..++.+++ +.. ...+ .+..+..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~~~~-~~~~~~~------- 221 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------TYLI-DDIPEDL------- 221 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------eeeh-hhhhhcc-------
Confidence 46789999999875 66666666642123479999999988888764 211 1111 1111111
Q ss_pred CeeEEEecCC---hHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+|+.... .+..++...+.|+++|++++.-.
T Consensus 222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 2599987665 45567888899999999987643
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.085 Score=41.31 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=71.9
Q ss_pred cCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHh---C-CCceEEEEeCCH-------------------
Q psy10573 31 ISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMA---G-PEGRVYGVEHVM------------------- 85 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~---~-~~~~v~~iD~s~------------------- 85 (206)
|........+...+...+ .-...|+|+||--|..+..+...+ + +..++++.|.=+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 444555555555554433 345789999999998776654332 2 344788886322
Q ss_pred -------HHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEE
Q psy10573 86 -------ELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRM 154 (206)
Q Consensus 86 -------~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l 154 (206)
...+..++++...+ ....++.++.+.+.+..+ ..+.+.+-++.++..+.. .++.++..|.|||++
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~g---l~~~~v~~vkG~F~dTLp-~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYG---LLDDNVRFVKGWFPDTLP-DAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTT---TSSTTEEEEES-HHHHCC-C-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcC---CCcccEEEECCcchhhhc-cCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 12344444444322 223689999999665544 235667777777776643 678889999999999
Q ss_pred EEEecCC
Q psy10573 155 VMPVGEP 161 (206)
Q Consensus 155 ~~~~~~~ 161 (206)
++--++.
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9876654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.019 Score=47.07 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---cccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~ 123 (206)
..++.+||-.|+|. |..+..+++..+. .+++++|.+++.++.+++.-.. .++. .+..+...
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~--- 231 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLAREMGAD-----------KLVNPQNDDLDHYKA--- 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHcCCc-----------EEecCCcccHHHHhc---
Confidence 34688999889874 7777777776542 2688999999998888763211 1111 11111000
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+|+....-...++...+.|+++|+++..-.
T Consensus 232 ~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 232 EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 123479999887766677888899999999987644
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0051 Score=42.84 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=63.2
Q ss_pred cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-cccCCCCCCeeEEEecC
Q psy10573 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLLTNPHGSTRVIQSCW 135 (206)
Q Consensus 60 G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~~~~~~~~D~i~~~~ 135 (206)
|.|..+..+++..+ ++++++|.++...+.+++.-.. .++..+ +.+. ... .+...+|+|+...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~-----------~~~~~~~~~~~~~i~~~-~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGAD-----------HVIDYSDDDFVEQIREL-TGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTES-----------EEEETTTSSHHHHHHHH-TTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccc-----------ccccccccccccccccc-cccccceEEEEec
Confidence 45788888888876 6999999999999999864322 122221 1111 111 1345789999988
Q ss_pred ChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 136 TKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 136 ~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.-...++...++++++|.+++.....
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred CcHHHHHHHHHHhccCCEEEEEEccC
Confidence 87788899999999999999886665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.032 Score=45.75 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
..+|+|.=+|+|.-++..+...+.. +++.-|+||.+++.+++|+..+. ..+...+..| .+..... .+..||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~D-AN~lm~~-~~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNS-----GEDAEVINKD-ANALLHE-LHRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcC-----cccceeecch-HHHHHHh-cCCCccE
Confidence 7899999999999998888776433 88899999999999999998742 2355666666 2211110 2356799
Q ss_pred EEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|=+++- ...+++...+.++.+|++.++.-
T Consensus 125 IDiDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 125 IDIDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred EecCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 855432 23466888888899998877643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.043 Score=47.47 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-ccccCCCc-----eEEEEcccccc--c
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-SELLDQGR-----VQFVAYFWLRH--L 119 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~~~~~-----i~~~~~d~~~~--~ 119 (206)
.++.+|+-+|+|. |..+...++..|. .|+++|.+++.++.+++.-.... .+...... ..-...+..+. .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4789999999997 7777888887764 79999999999999887321100 00000000 00000010000 0
Q ss_pred ccCCCC--CCeeEEEecCCh-----HHH-HHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPH--GSTRVIQSCWTK-----EEY-NSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~--~~~D~i~~~~~~-----~~~-~~~~~~~L~~gG~l~~~~~ 159 (206)
.+ .+ ..+|+++..... +.+ .+++.+.++|||.++....
T Consensus 241 ~~--~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LF--AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HH--HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 11 357999987765 235 4899999999999887755
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0076 Score=45.72 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=41.0
Q ss_pred CcHHH-HHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 32 SSPHI-HAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 32 ~~~~~-~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
++|.. ...+.+....+. ..+..+.|-+||+|++...+.-..+ .-..+++.|+++++++.|++|+..
T Consensus 30 ~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 30 AFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp ---HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 45543 333444433333 3446899999999999987753332 234789999999999999999863
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=44.65 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=44.4
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.+.+++.. -.+|..|||.-||+|+.+....+.. .+.+|+|+++...+.+.+++..
T Consensus 152 l~~~~i~~~---s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESF---THPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 444444443 4688999999999999988776533 3899999999999999998875
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.049 Score=42.53 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=58.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC-ceEEEEcccccccccC-CCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-RVQFVAYFWLRHLLLT-NPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~-~~~~~ 127 (206)
...+||++|+|+|-.++.++...+ ..+...|... .+...+.+...++...+... .+.+...+|.+..... .++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 356799999999977777665443 3666666443 44443333332221111111 3434333433222211 01111
Q ss_pred eeEEEecCC------hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWT------KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~------~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|+|++..+ ++.+...+...|..++++++...-.
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 687777655 4557777888888888666554443
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=43.75 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=65.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
...+.+... ..-++.+|+-+|+|. |......++..| ++|+.+|.++.....|+.. .++....+
T Consensus 189 ~~~i~r~t~-~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~------------G~~~~~~~- 252 (413)
T cd00401 189 IDGIKRATD-VMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAME------------GYEVMTME- 252 (413)
T ss_pred HHHHHHhcC-CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhc------------CCEEccHH-
Confidence 455555442 346789999999997 777777776654 4899999999887777642 11221111
Q ss_pred ccccccCCCCCCeeEEEecCChHHHHHH-HHhcccCCcEEEEEe
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSW-LLDQLVPGGRMVMPV 158 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~-~~~~L~~gG~l~~~~ 158 (206)
+. . ...|+|+........+.. ..+.+++||+++...
T Consensus 253 -e~--v----~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 253 -EA--V----KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -HH--H----cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 10 1 123999987776666654 488999999887664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.042 Score=45.29 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. .+++++|.++...+.+++.-.. .-+.....++... ... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~i~~~-~~~ 243 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREFGAT--------HTVNSSGTDPVEAIRAL-TGG 243 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHcCCc--------eEEcCCCcCHHHHHHHH-hCC
Confidence 67889999888874 6677777776542 1589999999888888642111 0011111111111 011 122
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+|+....-...++...+.++++|++++.-.
T Consensus 244 ~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVIDAVGRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 3579999876655566778889999999987643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0048 Score=44.36 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=37.4
Q ss_pred ccccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
....+| .+++.|+|++...+++ .++.|.+.|||||.+-+.++...
T Consensus 38 s~e~~F--~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 38 SNESMF--EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhhccC--CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 445667 8899999999888776 45899999999999999988765
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.056 Score=44.78 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.++...+.+++.-.. .-+.....++.+. ... ..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~--------~~i~~~~~~~~~~i~~~--~~ 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARELGAT--------ATVNAGDPNAVEQVREL--TG 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHHcCCc--------eEeCCCchhHHHHHHHH--hC
Confidence 67888998898874 6677777776542 1689999999988888653211 0001111111111 111 22
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+.+|+++....-...++...+.++++|.++....
T Consensus 258 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 3579999876656677788899999999887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.07 Score=43.89 Aligned_cols=97 Identities=20% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeC---CHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 123 (206)
..++.+||-+|+|. |.++..+++..+ .++++++. ++...+.+++.-.. .+.....+..+ ..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~---------~v~~~~~~~~~-~~--- 234 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGAT---------YVNSSKTPVAE-VK--- 234 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCE---------EecCCccchhh-hh---
Confidence 35788999999885 777777877764 47888886 67777766542111 11100011111 00
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+|+....-...+....+.++++|.+++.-.
T Consensus 235 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 235 LVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEec
Confidence 123569999988766677888999999999876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.036 Score=42.56 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=63.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCC----Cc----eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGP----EG----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-- 118 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-- 118 (206)
..-.+++|+++..|.++..+.+++.. .+ +|++||+.+.+ ..+.+.-+++|....
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~st 103 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSAST 103 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhH
Confidence 34578999999999999999887632 11 38899986621 124566677772111
Q ss_pred -----cccCCCCCCeeEEEecCCh-----HH------------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 -----LLLTNPHGSTRVIQSCWTK-----EE------------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 -----~~~~~~~~~~D~i~~~~~~-----~~------------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..| ..+..|+|+++... |. .+.-...+|+|||.|+.-.+-+.
T Consensus 104 ae~Ii~hf--ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 104 AEAIIEHF--GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHHHHHHh--CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 124 56677999998663 11 22445678999999988766544
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.22 Score=38.89 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=84.5
Q ss_pred cccccccccccccCcccc-ccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC---CceE
Q psy10573 3 RVDRKNFFTRVVNEPYRI-KSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRV 78 (206)
Q Consensus 3 ~~~~~~~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~---~~~v 78 (206)
++|.+.|++...++-|.. .-+|-+|.-+ ....+......-+.. +-.+...+|+|+|+..-++.+...+.+ ..+.
T Consensus 32 tlpP~~FYD~~GS~LFe~I~~LPEYYpTR-tEaaIl~~~a~Eia~-~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ry 109 (321)
T COG4301 32 TLPPKYFYDDRGSELFEQITRLPEYYPTR-TEAAILQARAAEIAS-ITGACTLVELGSGNSTKTRILLDALAHRGSLLRY 109 (321)
T ss_pred CCCCceeecccHHHHHHHHhccccccCch-hHHHHHHHHHHHHHH-hhCcceEEEecCCccHHHHHHHHHhhhcCCccee
Confidence 567777776665444432 2233333222 222233222222221 456889999999999999888776643 2367
Q ss_pred EEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEe-cCC--------hHHHHHHHHhccc
Q psy10573 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQS-CWT--------KEEYNSWLLDQLV 149 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~-~~~--------~~~~~~~~~~~L~ 149 (206)
+.+|++...+....+.+... ...-.+.-+.+|...... .++.++--+++. ... +..++..+...++
T Consensus 110 vpiDv~a~iL~~ta~ai~~~----y~~l~v~~l~~~~~~~La-~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~ 184 (321)
T COG4301 110 VPIDVSASILRATATAILRE----YPGLEVNALCGDYELALA-ELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALR 184 (321)
T ss_pred eeecccHHHHHHHHHHHHHh----CCCCeEeehhhhHHHHHh-cccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCC
Confidence 88999999877655544431 011234555566222111 113333233322 111 2347789999999
Q ss_pred CCcEEEEEecCC
Q psy10573 150 PGGRMVMPVGEP 161 (206)
Q Consensus 150 ~gG~l~~~~~~~ 161 (206)
||-.+++-+-..
T Consensus 185 pGd~~LlGvDl~ 196 (321)
T COG4301 185 PGDYFLLGVDLR 196 (321)
T ss_pred CcceEEEecccc
Confidence 999998765543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.063 Score=44.77 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~ 124 (206)
+.++.+||..|+|. |..+..+++..+. .++++++.+++..+.+++.... ..+..... ++... ..+ .+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~--------~vi~~~~~~~~~~~l~~~-~~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA--------ETINFEEVDDVVEALREL-TG 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc--------EEEcCCcchHHHHHHHHH-cC
Confidence 67788999999987 8888888887642 3699999999988888764211 11111111 11111 111 12
Q ss_pred CCCeeEEEecCC---------------------hHHHHHHHHhcccCCcEEEEEe
Q psy10573 125 HGSTRVIQSCWT---------------------KEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 125 ~~~~D~i~~~~~---------------------~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
...+|+++.... ....++.+.+.++++|.++...
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 335798887542 1235678889999999998774
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=41.58 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ .++++++.++...+.+++.-.. .++..... ..+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~~Ga~-----------~vi~~~~~-------~~~ 222 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALALGAA-----------SAGGAYDT-------PPE 222 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHhCCc-----------eecccccc-------Ccc
Confidence 67889999999764 666666666654 4789999999888887663221 11110000 112
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++........++...+.|+++|++++.-.
T Consensus 223 ~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 223 PLDAAILFAPAGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cceEEEECCCcHHHHHHHHHhhCCCcEEEEEec
Confidence 348766555445567888899999999977643
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.029 Score=44.74 Aligned_cols=72 Identities=14% Similarity=-0.000 Sum_probs=48.6
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+.||.|.++..+.... - ..++++|+++.+.+..+.++.. . ++.+|..+.....+ .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~-~~v~a~e~~~~a~~~~~~N~~~----------~-~~~~Di~~~~~~~~-~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-F-EIVAANEIDKSAAETYEANFPN----------K-LIEGDITKIDEKDF-IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-C-EEEEEEeCCHHHHHHHHHhCCC----------C-CccCccccCchhhc-CCCCCEEE
Confidence 68999999999988886542 2 2678899999999998887643 1 33445222111100 23569999
Q ss_pred ecCChH
Q psy10573 133 SCWTKE 138 (206)
Q Consensus 133 ~~~~~~ 138 (206)
..+++.
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 988864
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.054 Score=46.44 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCCCC-----CeEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 37 HAQMLELLKDKIKPG-----ARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~-----~~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
.+++.++|.++...+ ..|+-+|+|-|-+.....+. .....++|++|-+|.++...++.-.+ ....++
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-----~W~~~V 423 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-----CWDNRV 423 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-----hhcCee
Confidence 334455555443322 35778899999777555432 33456889999999988887763322 223679
Q ss_pred EEEEcccccccccCCCCCCeeEEEec--------CChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSC--------WTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~--------~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++..|...-. - |..+.|++++- -.-+..++.+.+.|||+|+.+-..++
T Consensus 424 tii~~DMR~w~-a--p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 424 TIISSDMRKWN-A--PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred EEEeccccccC-C--chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 99999932211 1 34666988662 11245678888999999987655443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.15 Score=41.28 Aligned_cols=100 Identities=23% Similarity=0.164 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 125 (206)
+.++.+||..|+|. |..+..+++..+ .++++++.+++..+.+++. .. ..+-.... +...... ....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~-g~--------~~~~~~~~~~~~~~~~-~~~~ 230 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKEL-GA--------DEVLNSLDDSPKDKKA-AGLG 230 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh-CC--------CEEEcCCCcCHHHHHH-HhcC
Confidence 56788888888763 777788887654 4799999999888777542 11 01100000 1100000 1144
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+.+|+++.........+.+.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCCCHHHHHHHHHHhhcCCEEEEECC
Confidence 5679999876556677888999999999987644
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.059 Score=39.61 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=68.2
Q ss_pred EcccCchHHHHHHHHhCCCceEEEE--eCCHHHHHHHH---HhhhccCccccCCCceEEEE-ccccccc-ccCCCCCCee
Q psy10573 57 IGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSI---KNIDKGNSELLDQGRVQFVA-YFWLRHL-LLTNPHGSTR 129 (206)
Q Consensus 57 lG~G~G~~~~~l~~~~~~~~~v~~i--D~s~~~~~~a~---~~~~~~~~~~~~~~~i~~~~-~d~~~~~-~~~~~~~~~D 129 (206)
+|=|.=.++..|++..+...+++++ |..++..+... ++++. +....+.++. .|+.... .+.+..+.||
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-----L~~~g~~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-----LRELGVTVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-----HhhcCCccccCCCCCcccccccccCCcCC
Confidence 6777778889998887544566655 54444433322 33333 2223333333 2421111 1123567889
Q ss_pred EEEecCCh-------------------HHHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEE
Q psy10573 130 VIQSCWTK-------------------EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180 (206)
Q Consensus 130 ~i~~~~~~-------------------~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (206)
.|+.+.+- ..++..+.++|+++|.+.++.........+....-....++..
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVL 147 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEE
Confidence 99998762 2355788999999999999988876433333333333344443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.041 Score=43.21 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCeEEEEcccCchHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHhhhc
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGP-------EGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..+|+|+|+|+|.++..+++.+.. ..+++.||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999999999887642 24789999999999888888865
|
; PDB: 4F3N_A 1ZKD_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.036 Score=38.60 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=40.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
-.+.+|+|+|++-|..+++++-... ..|+++|.++...+..++++..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhh
Confidence 3578999999999999999986643 3899999999999999988765
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.06 Score=45.25 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=44.9
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
..|||||+|+|-++..+++..+. .+|++|.-..+.+.|++....++. ..+|.+|..-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC----ccceeeeccc
Confidence 35899999999999988877644 799999999999999988876432 3567766543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=41.45 Aligned_cols=89 Identities=20% Similarity=0.110 Sum_probs=59.5
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.++.+++-+|+|. |.++..+++..+. ..+.++|.++..++.+.... ++ |.... ....
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~~--------------~i--~~~~~-----~~~g 200 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGYE--------------VL--DPEKD-----PRRD 200 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhcc--------------cc--Chhhc-----cCCC
Confidence 3567888889885 7787888876642 24667888887766654310 11 10000 1123
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|+|+....-...++.+.+.++++|++++.-.
T Consensus 201 ~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 201 YRAIYDASGDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCEEEECCCCHHHHHHHHHhhhcCcEEEEEee
Confidence 59999988877777888999999999987644
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.32 Score=35.58 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
....+.+.+.+.+...++.+|+-+||=+-... +.+...+..+++..|++........ + .|+.-
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~~~--------------~-~F~fy 71 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQFGG--------------D-EFVFY 71 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhcCC--------------c-ceEEC
Confidence 34555666666554566789999998654333 3332225568889999875544321 2 33444
Q ss_pred cccccccc--CCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 114 FWLRHLLL--TNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 114 d~~~~~~~--~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|......+ .+ .++||+|++++++- .+...+..++++++.++.+++..
T Consensus 72 D~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 72 DYNEPEELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CCCChhhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 42221111 12 56889999999972 23345555668888888877654
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.27 Score=38.16 Aligned_cols=102 Identities=28% Similarity=0.321 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||..|+|+ |..+..+++..+ .++++++.++...+.+++.-.. .-+.....+...... ....+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~-~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGAD--------HVIDYKEEDLEEELR-LTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCc--------eeccCCcCCHHHHHH-HhcCC
Confidence 47789999999986 666666776654 5899999998777776543111 001110111110000 01334
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|+++....-......+.+.++++|.++.....
T Consensus 201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 201 GADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCCEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence 5799998766545667788899999998876544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.12 Score=41.04 Aligned_cols=99 Identities=20% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~~~~~~ 124 (206)
..++.+||-.|+|. |..+..+++..+. .+++++|.++...+.+++.-.. .++. .+.... ... ..
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~-----------~~i~~~~~~~~~~~~-~~ 184 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSFGAT-----------ALAEPEVLAERQGGL-QN 184 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCc-----------EecCchhhHHHHHHH-hC
Confidence 35788999898875 6677777776542 2488889998888877653211 1111 010000 001 02
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....-...++...+.++++|+++....
T Consensus 185 ~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 185 GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEecc
Confidence 23469999877666677888999999999987653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.39 Score=41.69 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=49.2
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
.+..++...+...+.+.+.....|+..+.|..||+|.+.....+... ....++|-|..+.+...++.+..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 35555666666666666653234668999999999998876544321 12368999999999999988754
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.084 Score=43.31 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=55.4
Q ss_pred cccccccccC-ccccCcHHHHHHHHHH--------hhccCCC-CCeEEEEcccCchHHHHHHHHh---CC----CceEEE
Q psy10573 18 YRIKSRQIGY-GADISSPHIHAQMLEL--------LKDKIKP-GARILDIGSGSGYLTACLAYMA---GP----EGRVYG 80 (206)
Q Consensus 18 y~~~~~~~~~-~~~~~~~~~~~~~~~~--------l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~---~~----~~~v~~ 80 (206)
|.....++|. |-+++.|.+...+-+. +.+...| ...++|+|+|.|.++..+++.. .| ..+++.
T Consensus 35 YYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~i 114 (370)
T COG1565 35 YYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYI 114 (370)
T ss_pred ccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEE
Confidence 4444666664 4444667765544333 3332343 4679999999999998887654 12 468899
Q ss_pred EeCCHHHHHHHHHhhhcc
Q psy10573 81 VEHVMELAESSIKNIDKG 98 (206)
Q Consensus 81 iD~s~~~~~~a~~~~~~~ 98 (206)
||+|+.....=++++...
T Consensus 115 iE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 115 IEPSPELRARQKETLKAT 132 (370)
T ss_pred EecCHHHHHHHHHHHhcc
Confidence 999999988888887763
|
|
| >KOG1098|consensus | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.018 Score=50.10 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=45.0
Q ss_pred cccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
|...+...||-++.++..+. +.+.. ..+.++..|||+||.+|.++..+++.++.++-|+|+|+.|
T Consensus 15 ~Y~lAke~GyrsRsaFKLlQ--ln~ky-~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 15 YYRLAKELGYRSRSAFKLLQ--LNKKY-KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHhchhHHHHHHHHH--HHHHh-ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 44444555555443333222 22222 2368899999999999999999999987777889999876
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.17 Score=41.25 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--ccc-ccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLR-HLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~-~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++.-.. .++... ... ....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga~-----------~~i~~~~~~~~~~~~~- 226 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGAD-----------FVINSGQDDVQEIREL- 226 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC-----------EEEcCCcchHHHHHHH-
Confidence 57788999888874 666677777654 35 99999998888877543211 111111 000 0011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+++....-........+.|+++|++++...
T Consensus 227 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 227 TSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 1223579999876666666777889999999987644
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.17 Score=40.71 Aligned_cols=48 Identities=27% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHhhccCCC------CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHH
Q psy10573 37 HAQMLELLKDKIKP------GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87 (206)
Q Consensus 37 ~~~~~~~l~~~~~~------~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~ 87 (206)
...+++.|.....+ ..+||--|||.|+++..++... . .+-|-|.|--|
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~M 184 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFM 184 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-c--cccccHHHHHH
Confidence 34445555433333 4679999999999999998754 3 33444655544
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.046 Score=46.39 Aligned_cols=108 Identities=17% Similarity=0.074 Sum_probs=72.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc----ccccCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR----HLLLTNP 124 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~ 124 (206)
..+..+|-+|-|.|.+...+...+ +...+++++++|.+++.+..++.... ..+..+...|-.+ ...-.-.
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence 345678888999999988887666 55699999999999999999886521 1233344444111 0110113
Q ss_pred CCCeeEEEecCC---------------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 125 HGSTRVIQSCWT---------------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 125 ~~~~D~i~~~~~---------------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+..||+++.+-. ...++..+...|.|.|.+++...+.+
T Consensus 368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 456799877522 12355778899999999988876655
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.25 Score=41.16 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. ++.+. .
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~-----------~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKEMGIT-----------DFINPKDSDKPVHERIR 262 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHcCCc-----------EEEecccccchHHHHHH
Confidence 367889999999875 7777777776542 2689999999988888652111 12211 11110 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. ..+.+|+++....-...+......++++ |++++...
T Consensus 263 ~~--~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 263 EM--TGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred HH--hCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEcc
Confidence 11 2225799998877666777888888886 88876543
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.25 Score=40.38 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.+++..+.+++.-.. .++.. +....... .
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~-~ 224 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKSLGAM-----------QTFNSREMSAPQIQSV-L 224 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHcCCc-----------eEecCcccCHHHHHHH-h
Confidence 56788999888875 6677777776642 1478899888888877542111 11111 10000001 1
Q ss_pred CCCCee-EEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTR-VIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D-~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
....+| +++....-...+....+.|+++|.+++.-
T Consensus 225 ~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 225 RELRFDQLILETAGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred cCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 223457 77766665667788899999999988764
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.055 Score=45.98 Aligned_cols=107 Identities=14% Similarity=0.015 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC--CCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT--NPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~ 125 (206)
..++.+|||.=|++|.-++..++.++....+.+-|.++..++..+++...++.+ ..+.....|+ ....+. ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA-~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDA-NVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchH-HHHHHhccccc
Confidence 456778999999999999988887755558888999999999999998874322 2344555551 111110 023
Q ss_pred CCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..||+|=.++- ...+++.+.+.++.||++++++-
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 56799966532 34577888999999999988754
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.083 Score=35.65 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=28.5
Q ss_pred HHHHHHHhhccCC--CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeC
Q psy10573 37 HAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (206)
Q Consensus 37 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~ 83 (206)
.+.++........ +....+|+|||+|-+.-.|....- .=+|+|.
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY---PGWGIDA 88 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC---Ccccccc
Confidence 4444555543222 356799999999999877765432 4577775
|
; GO: 0008168 methyltransferase activity |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.8 Score=38.62 Aligned_cols=90 Identities=13% Similarity=0.021 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
...+.+|+-+|+|. |......++..+ ++|+++|.++.....+... .+.+...+ +. . .
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~------------G~~v~~le--ea--l--~-- 249 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMD------------GFRVMTME--EA--A--K-- 249 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhc------------CCEeCCHH--HH--H--h--
Confidence 35789999999997 766666666554 5899999988654444321 12222111 10 1 1
Q ss_pred CeeEEEecCChHHHHH-HHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNS-WLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~-~~~~~L~~gG~l~~~~~ 159 (206)
..|+++....-..++. .....+++|++++...-
T Consensus 250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 1399888776666654 57888999998876543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.38 Score=39.35 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++...+.+++.-.. .-+.....+... ...+ ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~i~~~-~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKEYGAT--------DIVDYKNGDVVEQILKL-TGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHcCCc--------eEecCCCCCHHHHHHHH-hCC
Confidence 67788888888774 6677777776643 2688999988877777652110 001110111111 0111 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-......+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEec
Confidence 357999976665556788899999999988653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.1 Score=41.75 Aligned_cols=53 Identities=17% Similarity=-0.023 Sum_probs=37.1
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCCh----------------------HHHHHHHHhcccCCcEEEEEec
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK----------------------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~----------------------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+-+++.+|..+... .++++++|+|+++++. ...+..+.++|+|||.+++...
T Consensus 7 ~~~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 345677888443222 2377888999988763 2356889999999999988643
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.37 Score=40.15 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE--cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~--~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+- ..++++|.++...+.+++.-.. .-+.... .++... ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~lGa~--------~~i~~~~~~~~~~~~v~~~-- 259 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKTFGVT--------DFINPNDLSEPIQQVIKRM-- 259 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHcCCc--------EEEcccccchHHHHHHHHH--
Confidence 67889999998875 6677777776542 2588899888888877542111 0011110 011110 111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~ 158 (206)
..+.+|+|+....-...+....+.+++| |++++.-
T Consensus 260 ~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 260 TGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred hCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEEC
Confidence 1225799998777665667788899998 9997653
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.5 Score=36.08 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc-ccccc-cccC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY-FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~-d~~~~-~~~~ 122 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++.+.. .. +..... ++... ...
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~- 224 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRY- 224 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHH-
Confidence 678899998887 4 5788888887764 4789999888877777533321 11 111111 11111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....- .....+.+.|+++|+++..-
T Consensus 225 -~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 225 -FPEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCCcEEEEECCCH-HHHHHHHHHhccCCEEEEEC
Confidence 12357999976664 46678889999999998653
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.47 Score=38.57 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++.-.. .-+.....++... ... .+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g~~--------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAGAT--------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhCCc--------EEEcCCcchHHHHHHHH-cCC
Confidence 56788888877653 6666777776542 2688888877776666542110 0011111111110 001 133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++........+....+.|+++|+++...
T Consensus 235 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVGFEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEc
Confidence 567999876554456788889999999987653
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.3 Score=35.85 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc-ccccccccCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY-FWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~-d~~~~~~~~~ 123 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++. .. .. +..... ++...... .
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~l-Ga--------~~vi~~~~~~~~~~~~~~-~ 203 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKL-GF--------DVAFNYKTVKSLEETLKK-A 203 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC--------CEEEeccccccHHHHHHH-h
Confidence 678899988884 3 5788888887654 4789999888887777542 11 11 111010 11110000 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....-. ......+.|+++|+++...
T Consensus 204 ~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 SPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEec
Confidence 234579999766544 4578889999999998653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.78 Score=37.97 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE--cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~--~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.+++..+.+++.-.. .-+.... .++... ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~Ga~--------~~i~~~~~~~~~~~~v~~~-- 251 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKLGAT--------DCVNPNDYDKPIQEVIVEI-- 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCCC--------eEEcccccchhHHHHHHHH--
Confidence 67889999899875 6777777776542 2799999999988888653111 0011110 011110 011
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
..+.+|+++....-...+....+.++++ |+++....
T Consensus 252 ~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 252 TDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred hCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEec
Confidence 1235699998766556677788889886 98876643
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.06 Score=45.93 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=52.8
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHH----HHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME----LAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~----~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-+|+|..+|.|+++..|... .|+.+...+. .+...-. + .+-=+..|+.+..+. =+.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIyd---R---------GLIG~yhDWCE~fsT--YPRT 427 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYD---R---------GLIGVYHDWCEAFST--YPRT 427 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhh---c---------ccchhccchhhccCC--CCcc
Confidence 47999999999999998642 3555544442 1111111 0 111112244433232 2566
Q ss_pred eeEEEecCCh---------HHHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~ 157 (206)
||+|-++..+ ..++-++.++|+|+|.+++-
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 7988776654 34667899999999999875
|
; GO: 0008168 methyltransferase activity |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.48 Score=38.46 Aligned_cols=102 Identities=18% Similarity=0.115 Sum_probs=62.0
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.+.++.+||..|+|. |..+..+++..+ .+++++..+++..+.+++.-.. .-+.....++.....-..+.
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~g~~--------~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARELGAD--------DTINVGDEDVAARLRELTDG 225 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHhCCC--------EEecCcccCHHHHHHHHhCC
Confidence 367888998888764 677777777654 5888888888877777542111 00111111111111000133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-......+.+.|+++|.++...
T Consensus 226 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 226 EGADVVIDATGNPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 457999986544456677889999999988653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.66 Score=38.34 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+ .++++++.+++....+.+.+.. -.++.. +....... .
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~~Ga----------~~vi~~~~~~~~~~~--~- 245 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINRLGA----------DSFLVSTDPEKMKAA--I- 245 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHhCCC----------cEEEcCCCHHHHHhh--c-
Confidence 45788888899875 777777777664 4788887776543332222211 011111 10000001 1
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++........++...+.|+++|.++...
T Consensus 246 ~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 246 GTMDYIIDTVSAVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeC
Confidence 236999987665556677889999999998764
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.53 Score=38.50 Aligned_cols=101 Identities=22% Similarity=0.151 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
+.++.+||-.|+|. |..+..+++..+ . ++++++.++...+.+++.-.. .-+.....++... ... .+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G--~~~v~~~~~~~~~~~~~~~~ga~--------~~i~~~~~~~~~~l~~~-~~ 238 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAG--ASKIIVSEPSEARRELAEELGAT--------IVLDPTEVDVVAEVRKL-TG 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC--------EEECCCccCHHHHHHHH-hC
Confidence 56788888888653 566666666653 3 788888888887777542111 0011111111111 111 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+.+|+++........++.+.+.|+++|.++....
T Consensus 239 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 239 GGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEcc
Confidence 33479999876655566788899999999876543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.12 Score=41.78 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=45.5
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+.||-|.++.-+.... - -.+.++|+++.+.+.-+.++. ....+|..+...-.++. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANFP------------EVICGDITEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhccc------------ccccccccccccccccc-cceEEE
Confidence 68999999999999887643 1 266899999999888887762 55666632221111244 469999
Q ss_pred ecCCh
Q psy10573 133 SCWTK 137 (206)
Q Consensus 133 ~~~~~ 137 (206)
..+++
T Consensus 67 ggpPC 71 (335)
T PF00145_consen 67 GGPPC 71 (335)
T ss_dssp EE---
T ss_pred eccCC
Confidence 98776
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.99 Score=36.92 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCC
Q psy10573 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~ 124 (206)
++++.+||-.|+. .|.++..+++..+- .++++-.+++-.+.+++.-.. .-+.+...|+.+.. .. ..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~lGAd--------~vi~y~~~~~~~~v~~~-t~ 208 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKELGAD--------HVINYREEDFVEQVREL-TG 208 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHhcCCC--------EEEcCCcccHHHHHHHH-cC
Confidence 6789999988744 47788888887653 555555566555566654332 11233333422221 11 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...+|+|+..-.-+.+ ......|+++|+++.+....
T Consensus 209 g~gvDvv~D~vG~~~~-~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTVGGDTF-AASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECCCHHHH-HHHHHHhccCCEEEEEecCC
Confidence 3357999987776654 45788899999998876544
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=93.51 E-value=1 Score=36.23 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEcccccc-cccCC
Q psy10573 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAYFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+ |.|..+..+++..+ .++++++.+++..+.+++ +.. .. +.....++... ...
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~-~Ga--------~~vi~~~~~~~~~~v~~~-- 207 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE-LGF--------DAVFNYKTVSLEEALKEA-- 207 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-cCC--------CEEEeCCCccHHHHHHHH--
Confidence 678889988874 34777777887764 478999988888888765 211 11 11111121111 111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
..+.+|+|+....- .......+.|+++|+++..
T Consensus 208 ~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 208 APDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 22457999976554 4567888999999999765
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.28 Score=40.74 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc--cCccc--cCCCceE
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK--GNSEL--LDQGRVQ 109 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~~~--~~~~~i~ 109 (206)
+.....+.+.+. +.++....|+|+|.|.....++...+ ...-.|+|+.....+.+..+... ..+.. .....+.
T Consensus 178 ~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 178 LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 444555666665 78999999999999999998887653 23557777665444333332221 00000 1124567
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChH-----HHHHHHHhcccCCcEEEEEec
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+.+++........=....++|+++...- .-.+++...+++|-+|+-+-+
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 77777322211111123347888765531 122477788899998876544
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.64 Score=38.11 Aligned_cols=101 Identities=19% Similarity=0.086 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+|+-.|+|. |..+..+++..+ .++++++.+++.++.+++.-.. .-+..... ++.+. ..+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~~~~~~~~- 232 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGFGAD--------LTLNPKDKSAREVKKLIKAF- 232 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCc--------eEecCccccHHHHHHHHHhh-
Confidence 67889999999975 777777777664 4789999999888888652111 00100000 11000 001
Q ss_pred CCCCCee----EEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTR----VIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D----~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+...+| +|+....-....+.+.+.|+++|+++..-.
T Consensus 233 t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 233 AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECc
Confidence 0112234 677655555566778889999999987643
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.69 Score=39.25 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=56.2
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+.+|+-+|+|. |......++..+ .+|+.+|+++.....+... .+++...+ +. . ..
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~------------G~~v~~l~--ea--l----~~ 267 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMD------------GFRVMTME--EA--A----EL 267 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhc------------CCEecCHH--HH--H----hC
Confidence 4789999999996 666666666554 4899999988665444321 11222111 10 1 12
Q ss_pred eeEEEecCChHHHHH-HHHhcccCCcEEEEEe
Q psy10573 128 TRVIQSCWTKEEYNS-WLLDQLVPGGRMVMPV 158 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~-~~~~~L~~gG~l~~~~ 158 (206)
.|+|+.......+++ .....+++|++++...
T Consensus 268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 268 GDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 399988776666664 6788899998776553
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.89 Score=30.72 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=54.6
Q ss_pred ccCchHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCeeEEEecCC
Q psy10573 59 SGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTRVIQSCWT 136 (206)
Q Consensus 59 ~G~G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~i~~~~~ 136 (206)
||.|..+..+++.+...+ .++.+|.+++..+.+++. .+.++.+|..+..-+ ...-.+.|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 455677777776654444 799999999998888653 367888883322111 012234576766544
Q ss_pred hHH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 137 KEE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 137 ~~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
-.. ......+.+.|...++.......
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 322 22344566677888887766543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.04 Score=43.95 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.+..|+|+-+|-|+++..+.-..+ ...|+++|.+|..++..+.+++.++. ..+...+.+|.. .+- ++...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R--~~~--~~~~A 263 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNR--NPK--PRLRA 263 (351)
T ss_pred cccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhcccc--ccC--ccccc
Confidence 3458999999999999984433332 23899999999999999998877332 123344444411 111 35556
Q ss_pred eEEEecCC--hHHHHHHHHhcccCCcE-EEEE
Q psy10573 129 RVIQSCWT--KEEYNSWLLDQLVPGGR-MVMP 157 (206)
Q Consensus 129 D~i~~~~~--~~~~~~~~~~~L~~gG~-l~~~ 157 (206)
|-|..... .+.-.-.+.++|+|.|- ++=.
T Consensus 264 drVnLGLlPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 264 DRVNLGLLPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred hheeeccccccccchHHHHHHhhhcCCcEEEE
Confidence 77766433 23333445677776443 4433
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.1 Score=36.92 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--cccc-ccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLR-HLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~-~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.++...+.+++.-.. .-+..... ++.. ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~~ga~--------~~i~~~~~~~~~~~~~~~~-- 250 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKEFGAT--------DFINPKDSDKPVSEVIREM-- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHcCCC--------cEeccccccchHHHHHHHH--
Confidence 67889999888874 6666667776542 2789999998888888642111 00110000 0011 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
..+.+|+|+....-...+....+.++++ |.++....
T Consensus 251 ~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 251 TGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred hCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcC
Confidence 1245699997666555667788888875 88877644
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.35 Score=40.04 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~ 92 (206)
.+-..|+|+|+|.|+++..++-..+ -+|++||-|....+.|+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQ 193 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHH
Confidence 4557899999999999999986654 39999999976655543
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.2 Score=37.56 Aligned_cols=108 Identities=14% Similarity=0.034 Sum_probs=63.1
Q ss_pred CCCCCeEEEEc-cc-CchHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE----cccccc-c
Q psy10573 48 IKPGARILDIG-SG-SGYLTACLAYMAGPE-GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA----YFWLRH-L 119 (206)
Q Consensus 48 ~~~~~~vLDlG-~G-~G~~~~~l~~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~----~d~~~~-~ 119 (206)
+.++.+|+-+| +| .|..+..+++..+.+ .+++++|.++..++.+++.+...... .+ ....++. .++... .
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~-~G-a~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS-RG-IELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc-cC-ceEEEECCCccccHHHHHH
Confidence 57788888887 45 477777777765322 37999999999999888753210000 00 0111121 111110 0
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. .....+|+++....-...+....+.++++|.+++..
T Consensus 251 ~~-t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 251 EL-TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HH-hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEE
Confidence 11 123357998886655566777889999888776543
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=93.11 E-value=1 Score=35.32 Aligned_cols=96 Identities=24% Similarity=0.136 Sum_probs=60.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.++|-.|+|. |..+..+++..+.. ++++++.+++..+.+++.-.. ..+ +... . ... ...
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~~~g~~--------~~~--~~~~-~--~~~--~~~ 158 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAEALGPA--------DPV--AADT-A--DEI--GGR 158 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHHHcCCC--------ccc--cccc-h--hhh--cCC
Confidence 67788888888775 66667777765431 399999888887766653100 011 0000 0 001 233
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++.............+.++++|.++....
T Consensus 159 ~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 159 GADVVIEASGSPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred CCCEEEEccCChHHHHHHHHHhcCCcEEEEEec
Confidence 459998765544566778889999999986543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.3 Score=36.58 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc--ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY--FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~--d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+- .++++++.+++..+.+++. .. .. +..... ++... ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~l-Ga--------~~~i~~~~~~~~~~~~v~~~- 252 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKKF-GA--------TDCVNPKDHDKPIQQVLVEM- 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc-CC--------CEEEcccccchHHHHHHHHH-
Confidence 67889999888764 6666777776542 2689999999888877542 11 11 111110 11110 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.++.+|+|+....-...+....+.++++ |+++....
T Consensus 253 -~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 -TDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred -hCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEcc
Confidence 2235799998766555667788899887 98886643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.082 Score=35.81 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=24.9
Q ss_pred eeEEEecCCh------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+|-... ..+++.++..|+|||.+++....+.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~ 48 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK 48 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence 6999886553 3367899999999999999866543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.4 Score=35.77 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
++.+||..|+|. |..+..+++..+. .++++++.++...+.+++.-.. .++..+-..........+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~g~~-----------~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAMGAD-----------ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHcCCC-----------EEEcCCchhhhhhhccCCCc
Confidence 678888888765 6677777776542 1688888888877766542110 11111100000010012347
Q ss_pred eEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 129 RVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 129 D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|+++.........+...+.|+++|+++...
T Consensus 233 d~vld~~g~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASGAPAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 999987664556678889999999998754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.95 Score=37.98 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+.. .++.+|.++..++.+++.- . . .+... +.... ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~-~vi~~d~~~~r~~~a~~~G-a--------~--~v~~~~~~~~~~~v~~~- 249 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAA-VVIVGDLNPARLAQARSFG-C--------E--TVDLSKDATLPEQIEQI- 249 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHHHHHcC-C--------e--EEecCCcccHHHHHHHH-
Confidence 67788887788875 66777777766432 4566788888888887631 1 1 11111 11110 111
Q ss_pred CCCCCeeEEEecCChH--------------HHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+++.....+ ..++...+.++++|.+++.-.
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 1223579998766653 467888899999999988654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.93 Score=40.78 Aligned_cols=108 Identities=10% Similarity=-0.119 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHh------CC-----CceEEEEeCCHH---HHHHHH-----------HhhhccCcc---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEHVME---LAESSI-----------KNIDKGNSE--- 101 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~------~~-----~~~v~~iD~s~~---~~~~a~-----------~~~~~~~~~--- 101 (206)
..-+|+|+|-|+|.......+.. .+ .-+++++|..+- .+..+. .........
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998765555333 12 237788996442 222221 111110000
Q ss_pred ----cc--CCCceEEEEcccccccccCCCCCCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEec
Q psy10573 102 ----LL--DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 102 ----~~--~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. +.-.++++.+|..+..+- -...+|+++.++-- ..++..+.++++|||++...+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~--~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQ--LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHh--ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 00 111345666774332221 12457999987532 3478999999999999976554
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.13 Score=43.03 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=51.4
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
...+|..|.|+.||.|-++..++. .+|.|++-|.++++++..+.++..+..+ ..++.....|
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~k---K~crV~aNDLNpesik~Lk~ni~lNkv~---~~~iei~Nmd 307 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAK---KGCRVYANDLNPESIKWLKANIKLNKVD---PSAIEIFNMD 307 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhh---cCcEEEecCCCHHHHHHHHHhccccccc---hhheeeeccc
Confidence 368999999999999999999886 4489999999999999999998875532 3447776666
|
|
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.37 Score=39.88 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
..+|..|+|.+|..|.-+..++......++++++|.+....+..++-+...+ ...+....+|
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~d 272 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGD 272 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCcccccccc
Confidence 4678999999999999999998887667899999999999999888877633 2344444555
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.3 Score=38.13 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=62.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
...+.+... ..-.+++|+-+|+|. |......++..+ .+|+++|.++.....+... .+.+...+
T Consensus 241 ~d~i~r~t~-i~LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~------------G~~vv~le- 304 (477)
T PLN02494 241 PDGLMRATD-VMIAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALME------------GYQVLTLE- 304 (477)
T ss_pred HHHHHHhcC-CccCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhc------------CCeeccHH-
Confidence 444444433 235689999999997 666666666554 4899999988654444321 11222111
Q ss_pred ccccccCCCCCCeeEEEecCChHHH-HHHHHhcccCCcEEEEEec
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEY-NSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~-~~~~~~~L~~gG~l~~~~~ 159 (206)
...... |+|+......++ .......+++|++++...-
T Consensus 305 Eal~~A-------DVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 305 DVVSEA-------DIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred HHHhhC-------CEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 001123 999987776665 4778889999998877644
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.6 Score=36.06 Aligned_cols=98 Identities=20% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-LL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~~ 120 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.+++..+.+++. .. . .++.. ++... ..
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~~-Ga--------~--~~i~~~~~~~~~~~~v~~ 252 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKKF-GV--------T--EFVNPKDHDKPVQEVIAE 252 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc-CC--------c--eEEcccccchhHHHHHHH
Confidence 67889999888764 6666777776542 2789999999888888652 11 1 11111 01000 11
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
. ..+.+|+++....-...+....+.++++ |++++...
T Consensus 253 ~--~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 253 M--TGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred H--hCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECc
Confidence 1 2235799988765555667778888996 88876643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.45 E-value=1 Score=36.39 Aligned_cols=97 Identities=22% Similarity=0.080 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+ .+ ++.++.+++..+.+++.- . . .++..+ .......
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g-~--------~--~~~~~~~~~~~~~~~~- 222 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKLG-A--------T--ETVDPSREDPEAQKED- 222 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhC-C--------e--EEecCCCCCHHHHHHh-
Confidence 57788999888653 666666666654 34 788888888777764421 1 1 122211 0000111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
....+|+++....-........+.|+++|+++....
T Consensus 223 -~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 223 -NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEec
Confidence 334579999865545567778899999999876643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.26 Score=38.12 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=15.5
Q ss_pred HHHHHHHhcccCCcEEEEE
Q psy10573 139 EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 139 ~~~~~~~~~L~~gG~l~~~ 157 (206)
..+.++.++|||||.+++.
T Consensus 53 ~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 53 PACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 3568889999999988764
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.8 Score=35.64 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=57.5
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.++.+|+-.|+|. |..+..+++..+ .+++.++.+++....+.+.+.. .. .+...+....... . ..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~Ga--------~~-~i~~~~~~~~~~~--~-~~ 244 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHLGA--------DD-YLVSSDAAEMQEA--A-DS 244 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhcCC--------cE-EecCCChHHHHHh--c-CC
Confidence 5788888888764 777777777654 4788888777665555433321 10 1111110000001 1 23
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|+++........++.+.+.++++|+++..-
T Consensus 245 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 245 LDYIIDTVPVFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CcEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence 6999887665556677889999999988754
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=92.32 E-value=4 Score=31.21 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCch--HHHHH--HHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGY--LTACL--AYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~--~~~~l--~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
..|... .++.+|.. -.....+++.+|+-|. .+..| +.+- .+++++.|-.++..+...++.+...+. ...
T Consensus 25 ~ep~~a-EfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~ 97 (218)
T PF07279_consen 25 KEPGVA-EFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGL----SDV 97 (218)
T ss_pred CCCCHH-HHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccc----ccc
Confidence 344444 44444431 3445678888665432 23333 3322 457999998888877777777765221 134
Q ss_pred eEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhccc--CCcEEEE
Q psy10573 108 VQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLV--PGGRMVM 156 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~--~gG~l~~ 156 (206)
++|+.++..+...- .-...|.++++.-.+....++.+.++ |.|-+++
T Consensus 98 vEfvvg~~~e~~~~--~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 98 VEFVVGEAPEEVMP--GLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred ceEEecCCHHHHHh--hccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence 68888872221111 11345999998888777656666554 4565544
|
The function of this family is unknown. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.24 E-value=2 Score=34.47 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ +.. ..+.... +. . ..+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~~-~~-----~--~~~ 213 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-LGV--------ETVLPDE-AE-----S--EGG 213 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-cCC--------cEEeCcc-cc-----c--cCC
Confidence 57788888887653 555566666554 478889888888888876 221 1111110 10 1 334
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+|+++....-....+...+.|+++|.++..
T Consensus 214 ~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 214 GFDVVVEATGSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 4699988655445567778889999999863
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=92.03 E-value=3.1 Score=33.83 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=58.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.++.....+++.-.. .-+.....+.... ... .+.
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~i~~~-~~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKKLGAT--------HTVNSAKGDAIEQVLEL-TDG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCCC--------ceeccccccHHHHHHHH-hCC
Confidence 56778877777753 5555666666542 3788898888776666542111 0011111111110 011 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++.........+.+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 234 RGVDVVIEAVGIPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCcEEEEec
Confidence 346999876554556778889999999987653
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.3 Score=36.65 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---cccc-ccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLR-HLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~-~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+.. .+++++.++...+.+++.-. -.++.. +... ....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~-~v~~~~~~~~k~~~~~~~g~-----------~~~i~~~~~~~~~~v~~~- 250 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCT-TIIAVDIVDSRLELAKELGA-----------THVINPKEEDLVAAIREI- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHcCC-----------cEEecCCCcCHHHHHHHH-
Confidence 56788888888764 67777777766432 68899998887776654211 111111 1111 1111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
....+|+++....-........+.++++|+++....
T Consensus 251 -~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 251 -TGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred -hCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCc
Confidence 133579999766544566788899999999887543
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=92.00 E-value=5.6 Score=32.27 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCC--CeEEEEcc--cCchHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-
Q psy10573 48 IKPG--ARILDIGS--GSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH- 118 (206)
Q Consensus 48 ~~~~--~~vLDlG~--G~G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~- 118 (206)
+.++ .+||-.|+ |.|..+..+++..+ + ++++++.+++..+.+++.+.. . .++.. ++.+.
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~lGa--------~--~vi~~~~~~~~~~i 217 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSELGF--------D--AAINYKTDNVAERL 217 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhcCC--------c--EEEECCCCCHHHHH
Confidence 4554 78888875 35777777877654 4 699999888877777653321 1 11111 11111
Q ss_pred cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
... .++.+|+++....-.. .....+.|+++|+++...
T Consensus 218 ~~~--~~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 218 REL--CPEGVDVYFDNVGGEI-SDTVISQMNENSHIILCG 254 (345)
T ss_pred HHH--CCCCceEEEECCCcHH-HHHHHHHhccCCEEEEEe
Confidence 111 2245799997655443 477889999999998653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.5 Score=36.83 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=61.0
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc----CC---CceEEEEccccc--cc
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----DQ---GRVQFVAYFWLR--HL 119 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~----~~---~~i~~~~~d~~~--~~ 119 (206)
++.+++-+|+|. |..+..+++..+ +.++++|.++..++.+++ +........ +. ........+..+ ..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 568999999996 677777777765 479999999998888775 221000000 00 000001011000 00
Q ss_pred ccCCCCCCeeEEEecCC-----hHH-HHHHHHhcccCCcEEEEEecC
Q psy10573 120 LLTNPHGSTRVIQSCWT-----KEE-YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~-----~~~-~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+.-.-..+|+|+.... .+. +.++..+.+|||+.++-....
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 01000234699987662 222 457889999999998755444
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.8 Score=35.12 Aligned_cols=101 Identities=11% Similarity=-0.087 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+|+-.|+|. |..+..+++. .+. ..+++++.+++..+.+++.-... -+.....++.....- ..
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~Ga~~--------~i~~~~~~~~~~~~~--~g 226 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKESGADW--------VINNAQEPLGEALEE--KG 226 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHhCCcE--------EecCccccHHHHHhc--CC
Confidence 67888998899764 5555566654 232 25788898888887776532110 001101111111100 11
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....-........+.|+++|+++....
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 1246887755544566778899999999987643
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.3 Score=34.03 Aligned_cols=22 Identities=27% Similarity=0.236 Sum_probs=15.3
Q ss_pred CCCCeEEEEcccCchHHHHHHH
Q psy10573 49 KPGARILDIGSGSGYLTACLAY 70 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~ 70 (206)
...-+|+|+||.+|..+..+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3446899999999998876654
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=1 Score=33.82 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=58.3
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
...++.+|-+|+- +|.+...++.. .++|+.+|+.|.+..... +++.|.. ...+ ..|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp-------------~~v~Fr~-----~~~~--~~G 98 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLP-------------NNVKFRN-----LLKF--IRG 98 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCC-------------CCccHhh-----hcCC--CCC
Confidence 3567899999987 68777777653 459999999996654442 3454432 2334 677
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+|+|+.-.++-.+-.+..+-++|+- +++.-+.+
T Consensus 99 ~~DlivDlTGlGG~~Pe~L~~fnp~v-fiVEdP~g 132 (254)
T COG4017 99 EVDLIVDLTGLGGIEPEFLAKFNPKV-FIVEDPKG 132 (254)
T ss_pred ceeEEEeccccCCCCHHHHhccCCce-EEEECCCC
Confidence 88999886665444445556666654 44554443
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=91.53 E-value=4.2 Score=33.00 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc-ccccc-cccC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY-FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~-d~~~~-~~~~ 122 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++.+.. .. +..... ++... ...
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~- 217 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRY- 217 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHh-
Confidence 678899998886 3 4777777877654 4788888888888877653321 11 111111 21111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....- .......+.|+++|+++...
T Consensus 218 -~~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 218 -FPNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred -CCCCcEEEEECCCH-HHHHHHHHHhccCcEEEEec
Confidence 12457999976554 55678889999999998653
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.7 Score=35.34 Aligned_cols=98 Identities=22% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---c---ccc-
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---W---LRH- 118 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~---~~~- 118 (206)
+.++.+||-.|+|. |..+..+++..+ .+ ++.++.+++..+.+++. .. . .++..+ . ...
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~-g~--------~--~vi~~~~~~~~~~~~~~ 226 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL-GA--------T--HTVNVRTEDTPESAEKI 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc-CC--------c--EEeccccccchhHHHHH
Confidence 67888888777764 667777777654 34 88888888777766542 11 0 111111 0 000
Q ss_pred cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
... .....+|+|+........+....+.|+++|+++....
T Consensus 227 ~~~-~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 227 AEL-LGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred HHH-hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 011 1334579999876655466788899999999886543
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.40 E-value=6.5 Score=32.36 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=73.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--- 113 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--- 113 (206)
....+..+ ++++.+|.-+|||- |-.+..-++.. ...+++++|++++.++.|++.=. .+++..
T Consensus 175 Gav~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGA-----------T~~vn~~~~ 240 (366)
T COG1062 175 GAVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGA-----------THFVNPKEV 240 (366)
T ss_pred HHhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCC-----------ceeecchhh
Confidence 33445555 78999999999985 55555555555 34599999999999999987433 233332
Q ss_pred -ccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 114 -FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 114 -d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
|..+... .+-++..|.++....-....+.....++++|..++.-.....
T Consensus 241 ~~vv~~i~-~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 241 DDVVEAIV-ELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred hhHHHHHH-HhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 2111100 113345587777666666778888888889998888665543
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.8 Score=32.97 Aligned_cols=96 Identities=22% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+| .|..+..+++..+ .++++++.+++..+.+++. .. . .++.........- ..+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~-g~--------~--~~~~~~~~~~~~~--~~~ 224 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARKL-GA--------D--EVVDSGAELDEQA--AAG 224 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh-CC--------c--EEeccCCcchHHh--ccC
Confidence 5778888888887 4666666776654 4789999888887777432 11 0 1111110000000 113
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|+++....-......+.+.|+++|.++...
T Consensus 225 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 225 GADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 46999876454456677889999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.89 Score=36.75 Aligned_cols=106 Identities=22% Similarity=0.125 Sum_probs=57.3
Q ss_pred CeEEEEcccCchHHHHHHHHh-------------------CCCceEEEEeCCHHH--HHHHHHhhhcc------------
Q psy10573 52 ARILDIGSGSGYLTACLAYMA-------------------GPEGRVYGVEHVMEL--AESSIKNIDKG------------ 98 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~-------------------~~~~~v~~iD~s~~~--~~~a~~~~~~~------------ 98 (206)
.+||.||.|.|.-...++... .+..+++.||+.++. +......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986666555444 011388999988864 44444433322
Q ss_pred CccccCCCceEEEEcccccccc--c-C-CCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEE
Q psy10573 99 NSELLDQGRVQFVAYFWLRHLL--L-T-NPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 99 ~~~~~~~~~i~~~~~d~~~~~~--~-~-~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~ 157 (206)
.......-++.|.+.|+..... + . +...+.++|..-..+. .++..+-..+++|..+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0001122357888888322111 0 0 1112335554333322 2556777888888877655
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.8 Score=34.93 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=57.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHH-HHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMEL-AESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 125 (206)
.++..|+-.|+|. |..+..+++..+ .++++++.+++. .+.+++ +.. . .++.. +....... .
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~-lGa--------~--~~i~~~~~~~v~~~--~- 240 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR-LGA--------D--SFLVTTDSQKMKEA--V- 240 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh-CCC--------c--EEEcCcCHHHHHHh--h-
Confidence 5788898888875 777777777664 478888876543 444432 111 1 11111 10000011 1
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++....-...+....+.++++|.++...
T Consensus 241 ~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 241 GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEc
Confidence 236999987665556677889999999998764
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=90.77 E-value=4.4 Score=32.65 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=57.2
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~ 127 (206)
.+.+++-+|+|. |......++..+ ++|+.+|.++...+.+++. ..+++.. +..+. -..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~------------G~~~~~~~~l~~~------l~~ 210 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEM------------GLSPFHLSELAEE------VGK 210 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHc------------CCeeecHHHHHHH------hCC
Confidence 578999999985 555555555543 5999999998765555431 1122211 11111 013
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|+|+...+..-+.+...+.+++++.++-....+.
T Consensus 211 aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pg 245 (296)
T PRK08306 211 IDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPG 245 (296)
T ss_pred CCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCC
Confidence 49999876554455677788899988776655543
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.68 E-value=3.7 Score=33.88 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--cccc-ccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLR-HLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~-~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++...+.+++ +... .-+..... +... ....
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~g~~-------~~v~~~~~~~~~~~~l~~~-- 249 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-LGAT-------ECINPRDQDKPIVEVLTEM-- 249 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-hCCC-------eecccccccchHHHHHHHH--
Confidence 57788888888764 6666667776542 257888888888877754 2210 00111111 1001 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhccc-CCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLV-PGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~ 159 (206)
..+.+|+++.............+.|+ ++|+++....
T Consensus 250 ~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 250 TDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred hCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEec
Confidence 12457999976544456677888899 9999886643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.68 E-value=1 Score=36.81 Aligned_cols=77 Identities=10% Similarity=-0.050 Sum_probs=50.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
..+++|+.||.|.+..-+.... - --+.++|+++.+++.-+.++.. ..++..|..+...-.+....+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f-~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-F-EIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-C-eEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCE
Confidence 3579999999999998776543 1 1556889999999998887652 23444452211111112226699
Q ss_pred EEecCChHH
Q psy10573 131 IQSCWTKEE 139 (206)
Q Consensus 131 i~~~~~~~~ 139 (206)
++..++|+.
T Consensus 71 ligGpPCQ~ 79 (328)
T COG0270 71 LIGGPPCQD 79 (328)
T ss_pred EEeCCCCcc
Confidence 999888753
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.59 E-value=4.6 Score=32.49 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ +.. -.++..+.. +..
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~g~----------~~~~~~~~~-------~~~ 224 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE-LGA----------DWAGDSDDL-------PPE 224 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-hCC----------cEEeccCcc-------CCC
Confidence 67788888787764 555566666543 588888888877766643 211 011111100 123
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|+++.........+...+.|+++|+++...
T Consensus 225 ~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 225 PLDAAIIFAPVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc
Confidence 35888765444456788899999999998643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.71 Score=33.11 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=26.0
Q ss_pred EEcccCc--hHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 56 DIGSGSG--YLTACLA-YMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 56 DlG~G~G--~~~~~l~-~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
|+|+..| .....+. +..++.++++++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 2455778999999999999988888
|
; PDB: 2PY6_A. |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.47 E-value=3.9 Score=33.23 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=57.8
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~ 124 (206)
..++.+|+-.|+| .|..+..+++..+ .+ +++++.++...+.+++.-.. .-+.....++.... .. .+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~l~~~-~~ 227 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKMGAT--------YVVNPFKEDVVKEVADL-TD 227 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCc--------EEEcccccCHHHHHHHh-cC
Confidence 5677787766665 3566666666654 34 78887777666666542110 00111111111110 11 13
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....-......+.+.|+++|.++....
T Consensus 228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEcc
Confidence 34579999865545567788899999999876643
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.44 E-value=5.3 Score=32.53 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=59.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---ccc-ccccCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLR-HLLLTN 123 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~-~~~~~~ 123 (206)
.++.+||-.|+|. |..+..+++..+. .+++.++.++...+.+++ +.. ..++... +.. ....
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~g~----------~~~~~~~~~~~~~~~~~~-- 239 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA-AGA----------DVVVNGSDPDAAKRIIKA-- 239 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-hCC----------cEEecCCCccHHHHHHHH--
Confidence 4678888888764 6666777776542 268888888887777744 211 0111111 100 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
..+.+|+++.............+.|+++|+++..
T Consensus 240 ~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 240 AGGGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred hCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 1225799998765556678889999999998864
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.9 Score=34.40 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.|+.|+-+|-. --.+..++ ..+-.-++..+|+++..++...+..++ .+..++..+.-|..+..|- --...||
T Consensus 152 ~gK~I~vvGDD-DLtsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee-----~g~~~ie~~~~Dlr~plpe-~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEE-----LGYNNIEAFVFDLRNPLPE-DLKRKFD 223 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHH-----hCccchhheeehhcccChH-HHHhhCC
Confidence 35668888833 22333332 122223899999999999999988887 4456788888885543331 0145679
Q ss_pred EEEecCCh-----HHHHHHHHhcccCC---cEEEEEecC
Q psy10573 130 VIQSCWTK-----EEYNSWLLDQLVPG---GRMVMPVGE 160 (206)
Q Consensus 130 ~i~~~~~~-----~~~~~~~~~~L~~g---G~l~~~~~~ 160 (206)
+++-+++- ..++..-...|+.. |++.++...
T Consensus 224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred eeecCchhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 99988773 22344445566654 677666544
|
|
| >KOG2912|consensus | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.5 Score=35.67 Aligned_cols=79 Identities=13% Similarity=-0.022 Sum_probs=47.4
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc---ccccC-CCCCCee
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR---HLLLT-NPHGSTR 129 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~-~~~~~~D 129 (206)
-+|||+|....-..+-... .+-...++|++...+..|+++..++++. ..+.++..+... ...++ .++..||
T Consensus 106 GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceee
Confidence 3789887644333332111 2235678999999999999999885543 345555543100 00111 2345689
Q ss_pred EEEecCCh
Q psy10573 130 VIQSCWTK 137 (206)
Q Consensus 130 ~i~~~~~~ 137 (206)
.++|++++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99999886
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.4 Score=33.50 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++. .. .. +.....+...... ..
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~-g~--------~~~i~~~~~~~~~~~~---~~ 226 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKL-GA--------HHYIDTSKEDVAEALQ---EL 226 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHc-CC--------cEEecCCCccHHHHHH---hc
Confidence 67788999888764 666677777654 4789999888877777542 11 00 1110111111000 01
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++........+....+.|+++|.++....
T Consensus 227 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 227 GGAKLILATAPNAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCCEEEECCCchHHHHHHHHHcccCCEEEEEec
Confidence 2359998754444566778899999999886643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.5 Score=37.72 Aligned_cols=90 Identities=12% Similarity=-0.110 Sum_probs=56.7
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+++|+-+|+|. |......++.. +.+|+.+|.++.....+.. . .+++...+ .-....
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~---~---------G~~~~~le-ell~~A------ 310 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM---E---------GYQVVTLE-DVVETA------ 310 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh---c---------CceeccHH-HHHhcC------
Confidence 4688999999996 65555555544 3589999888765433332 1 12222222 001123
Q ss_pred eeEEEecCChHHHH-HHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEEYN-SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~~~-~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+......+++ ......+|||++++-..-.
T Consensus 311 -DIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 311 -DIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred -CEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 9998876666655 5788889999988776444
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.76 Score=33.50 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHHhcccCCcEEEEEecCCCC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
...++.++||+||.+++.++-+.+
T Consensus 93 ~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 93 AMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred HHHHHHHhhccCCeEEEEeecCCc
Confidence 446788999999999999998763
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.75 Score=37.43 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=32.1
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
|+|+.||.|.++.-+.... - --+.++|+++.+.+.-+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~-~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-F-KCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcC-C-eEEEEEeCCHHHHHHHHHhCC
Confidence 5899999999998886532 2 145689999999998887764
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.6 Score=34.19 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--c-ccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--W-LRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~-~~~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+++. .. ..++... . ......
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~-g~----------~~~~~~~~~~~~~~~~~- 222 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAREL-GA----------DDTINPKEEDVEKVREL- 222 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc-CC----------CEEecCccccHHHHHHH-
Confidence 57788888888765 666677776654 34 88888887776666432 11 1111111 0 000111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-......+.+.|+++|.++...
T Consensus 223 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 123347999976544556678889999999987664
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.7 Score=35.35 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEE-EcccccccccCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFV-AYFWLRHLLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~-~~d~~~~~~~~~~ 124 (206)
+.||+++--.|.| -|.++..+++..+- +|+++|.+....+.+-+.+.. ..+ .+. ..|+.+... ..-
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~--rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d~d~~~~~~-~~~ 247 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGM--RVTVISTSSKKKEEAIKSLGA--------DVFVDSTEDPDIMKAIM-KTT 247 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCc--EEEEEeCCchhHHHHHHhcCc--------ceeEEecCCHHHHHHHH-Hhh
Confidence 4688888777766 68999999888764 999999998777777666543 222 111 112111110 112
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++-.|.+..- .++.++...+.||++|.+++.-...
T Consensus 248 dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 248 DGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred cCcceeeeec--cccchHHHHHHhhcCCEEEEEeCcC
Confidence 3334555422 3445566778999999998875543
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.32 E-value=3.9 Score=33.23 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
..++.+||-.|+|. |..+..+++..+ . ++++++.++.....+++.-.. .-+.....++...... .+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~-~~~ 229 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKKMGAD--------VVINPREEDVVEVKSV-TDG 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCcc--------eeeCcccccHHHHHHH-cCC
Confidence 45677877777654 667777777654 3 677887777666665542110 0000001111100111 133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++....-......+.+.|+++|.++...
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 457999987655556677889999999987653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.21 E-value=2.6 Score=31.77 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
..|...-.+.+++- -..+..|+|+|+-.|..+..++... |...++.++|++=...+-+... .+++
T Consensus 53 k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i 120 (237)
T COG3510 53 KSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI 120 (237)
T ss_pred CCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence 34555555555554 2456789999999998887776542 3345899998876544333211 3689
Q ss_pred EEEEcccccc---cccCCCCCCeeEEEe----cCChHHHH---HHHHhcccCCcEEEEEecC
Q psy10573 109 QFVAYFWLRH---LLLTNPHGSTRVIQS----CWTKEEYN---SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 109 ~~~~~d~~~~---~~~~~~~~~~D~i~~----~~~~~~~~---~~~~~~L~~gG~l~~~~~~ 160 (206)
.|+.++.... .+.....+.+--|++ +....+++ +....+|..|..+++.-..
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 9999981111 010001111122322 23344444 5556778888888776443
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.98 E-value=6.3 Score=32.43 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=58.2
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ +.. ..++.. ++... ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~-~g~----------~~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE-LGA----------THTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH-hCC----------ceEecCCcccHHHHHHHH
Confidence 4677788767765 3666666776654 35 8888888877776643 211 111111 11100 001
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.++..+|+|+....-......+.+.|+++|.++....
T Consensus 252 -~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 252 -TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred -hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 1234579998754433366778899999999887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=88.81 E-value=10 Score=31.11 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEEcccc----cccccC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVAYFWL----RHLLLT 122 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~----~~~~~~ 122 (206)
.++.+||-.|+|. |..+..+++..+. .++++++.++...+.+++ +.. ..+ .....+.. .....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~i~~~- 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELARE-FGA--------DATIDIDELPDPQRRAIVRDI- 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-cCC--------CeEEcCcccccHHHHHHHHHH-
Confidence 4788888888764 6666667766542 278899888877766653 211 111 00000000 00001
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.....+|+++....-...+....+.++++|+++...
T Consensus 245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEc
Confidence 122357999976554456677889999999998654
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.77 E-value=7.2 Score=32.06 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++...+.+++ +.. ..++.. ++... ...
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~-~g~----------~~vv~~~~~~~~~~l~~~- 246 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR-FGA----------THTVNASEDDAVEAVRDL- 246 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH-hCC----------eEEeCCCCccHHHHHHHH-
Confidence 56788888887763 6666777776542 148888888877766643 211 111111 11110 011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-........+.|+++|+++...
T Consensus 247 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 247 TDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 123457999876554456678889999999987664
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.63 E-value=3.7 Score=34.13 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=58.5
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
.+.++.+||-.|+|. |..+..+++..+. .++++++.++...+.+++.-.. .-+..... ++... ...
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKEMGAD--------YVFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCC--------EEEcccccccccHHHHHHHh
Confidence 467788888778764 5555666666542 1688898888766666542111 00111100 11110 111
Q ss_pred CCCCCCeeEEEecCCh-HHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTK-EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~-~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+|+....- ........+.|+++|+++...
T Consensus 271 -~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 271 -TKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred -cCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEEC
Confidence 133457999876543 345677788999999998654
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=88.55 E-value=6.2 Score=27.12 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=54.1
Q ss_pred CeEEEEcccCchH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~G~~-~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
.+|+|+|-|-=.. +..+++ .++.++++|+++. .+. ..+.++..|..+..-- --...|+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e---~g~dv~atDI~~~---~a~-------------~g~~~v~DDitnP~~~--iY~~A~l 73 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAE---RGFDVLATDINEK---TAP-------------EGLRFVVDDITNPNIS--IYEGADL 73 (129)
T ss_pred CcEEEEccchHHHHHHHHHH---cCCcEEEEecccc---cCc-------------ccceEEEccCCCccHH--HhhCccc
Confidence 4999999875322 233333 3468999999886 111 2467777773322110 0233499
Q ss_pred EEecCChHHHHHHHHhccc-CCcEEEEEecCCCC
Q psy10573 131 IQSCWTKEEYNSWLLDQLV-PGGRMVMPVGEPFK 163 (206)
Q Consensus 131 i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~~~~~ 163 (206)
|++.-+.+.+...+.++.+ -|..+++....+..
T Consensus 74 IYSiRpppEl~~~ildva~aVga~l~I~pL~Ge~ 107 (129)
T COG1255 74 IYSIRPPPELQSAILDVAKAVGAPLYIKPLTGEP 107 (129)
T ss_pred eeecCCCHHHHHHHHHHHHhhCCCEEEEecCCCC
Confidence 9998887776666655544 35566666555543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.6 Score=34.56 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhC----CCceEEEEeCCHH
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVME 86 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~v~~iD~s~~ 86 (206)
+.++..++|+|||.|.++.+++.... +...++.||....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 57788999999999999999987763 3358889997663
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.13 E-value=5.1 Score=32.42 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--cccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.+++..+.+++. .. -.++..+ +... ... .
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~~-g~----------~~~~~~~~~~~~~i~~~-~ 231 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAERL-GA----------DHVLNASDDVVEEVREL-T 231 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHh-CC----------cEEEcCCccHHHHHHHH-h
Confidence 56788888888664 5555566665531 4788888888777766432 11 0111111 0000 011 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+...+|+++....-....+...+.|+++|.++...
T Consensus 232 ~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 232 GGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 22357999976654556788889999999998654
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=4.9 Score=32.48 Aligned_cols=98 Identities=17% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEE-cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVA-YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~-~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++.. .+.++++++.+++..+.+++ +.. ..+ .... .+.... ...
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~-~g~--------~~v~~~~~~~~~~~~v~~~-- 227 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKE-VGA--------DLTINSKRVEDVAKIIQEK-- 227 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHH-cCC--------cEEecccccccHHHHHHHh--
Confidence 67888998888653 66666666653 13489999999988888854 211 111 0000 010000 001
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. .+|.++.+..-....+...+.|+++|.++...
T Consensus 228 ~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 228 TG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEe
Confidence 11 35855544444556788899999999988654
|
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.79 E-value=4.7 Score=32.72 Aligned_cols=103 Identities=19% Similarity=0.048 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
..++.+|+-.|+|. |..+..+++..+. .+++.++.++...+.+++.-.. .-+.....++... ... ..+
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~lg~~--------~~~~~~~~~~~~~~~~~-~~~ 230 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARKMGAT--------RAVNVAKEDLRDVMAEL-GMT 230 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhCCc--------EEecCccccHHHHHHHh-cCC
Confidence 34677877777664 6666667766542 1577778777766665542111 0000001111111 011 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+|+++....-...+....+.|+++|.++.....
T Consensus 231 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 231 EGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecC
Confidence 45799998555455667788899999999887543
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=5.4 Score=36.10 Aligned_cols=101 Identities=17% Similarity=0.052 Sum_probs=57.3
Q ss_pred eEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhh---ccCc-cccCCCceEEEEcccccc---c---
Q psy10573 53 RILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNID---KGNS-ELLDQGRVQFVAYFWLRH---L--- 119 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~a~~~~~---~~~~-~~~~~~~i~~~~~d~~~~---~--- 119 (206)
.|+-+|+|-|-+.....+. .+...++++||-++..+.....+.. .+.. ...-...++++..|...- .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5888999999887655443 3445689999999664444433321 1110 000023589999992211 0
Q ss_pred ccCC--CCCCeeEEEec--------CChHHHHHHHHhcccC----CcE
Q psy10573 120 LLTN--PHGSTRVIQSC--------WTKEEYNSWLLDQLVP----GGR 153 (206)
Q Consensus 120 ~~~~--~~~~~D~i~~~--------~~~~~~~~~~~~~L~~----gG~ 153 (206)
...+ .-+.+|+|++- -.-+..++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0000 12468999872 1124566677777765 675
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.98 E-value=6.8 Score=32.21 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE---Ecccccc-ccc-
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---AYFWLRH-LLL- 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~---~~d~~~~-~~~- 121 (206)
+.++.+||-.|+|. |..+..+++..+.. .+++++.++...+.+++.-.. .+..+ ..++... ..+
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~ 248 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAP-RIVIVDVDDERLSVAKQLGAD---------EIVLVSTNIEDVESEVEEIQ 248 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHhCCC---------EEEecCcccccHHHHHHHHh
Confidence 56788888888763 66667777765432 578889888777766652111 11111 0111110 000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
....+.+|+++....-...+....+.|+++|+++...
T Consensus 249 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 249 KAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 0123357999886554456688889999999987553
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.91 E-value=2.7 Score=29.31 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--cccCCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH--LLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~ 127 (206)
+..+|+|+|-|.=......++..| ..++++|+.+. .+. ..+.++..|..+. .-| ..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~---~a~-------------~g~~~v~DDif~P~l~iY----~~ 70 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR---KAP-------------EGVNFVVDDIFNPNLEIY----EG 70 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------------------STTEE---SSS--HHHH----TT
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc---ccc-------------cCcceeeecccCCCHHHh----cC
Confidence 345999999997555444444433 59999999987 111 2456777773221 112 34
Q ss_pred eeEEEecCChHHHHHHHHhccc-CCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLV-PGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~~~~ 162 (206)
.|+|++.-+...+-..+.++.+ -|.-+++...+..
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 5999997776554433333332 4667777766655
|
; PDB: 2K4M_A. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=86.87 E-value=2.4 Score=30.45 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
.....|+|+|-|+|..--.+...+ |...|+++|..-
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l 62 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRAL 62 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS-
T ss_pred CCCCceEEeccCCCccHHHHHHhC-CCCeEEEEeeec
Confidence 345789999999999999998888 778999999643
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=86.62 E-value=7.4 Score=31.50 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
..++.+||-.|+|. |..+..+++..+. .++++++.++.....+++ +.. .-+.....++... ... .+.
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~l~~~-~~~ 233 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA-LGA--------EPINFEDAEPVERVREA-TEG 233 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH-hCC--------eEEecCCcCHHHHHHHH-hCC
Confidence 56778888777653 5555666665431 278888877766666544 211 0011111111110 011 133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-........+.++++|.++...
T Consensus 234 ~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 234 RGADVVLEAVGGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence 457999976655556778889999999987654
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.46 E-value=5.5 Score=32.43 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=60.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
.+|.-||.|. |..+..++-.+ ++.|+.+|+|.+.+......+.. +++....+..+... .-...|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~~---------rv~~~~st~~~iee---~v~~aDl 234 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFGG---------RVHTLYSTPSNIEE---AVKKADL 234 (371)
T ss_pred ccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhCc---------eeEEEEcCHHHHHH---HhhhccE
Confidence 4567788885 88887777654 45999999999988888766643 56665555111110 0112387
Q ss_pred EEecCCh-----HH-HHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWTK-----EE-YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~~-----~~-~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|..-.. +. +.+++.+.++||+.++=...
T Consensus 235 vIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred EEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 7653222 22 44788899999998876544
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.34 E-value=9.6 Score=30.90 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+++-.|+|. |..+..+++..+ .+++.++.+++..+.+++ +.. . .++...-.....- ..+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~g~--------~--~vi~~~~~~~~~~--~~~ 231 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK-LGA--------D--EFIATKDPEAMKK--AAG 231 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-cCC--------c--EEecCcchhhhhh--ccC
Confidence 56777777777753 666666666653 488999988887777753 211 1 1111110000000 124
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++.............+.|+++|.++....
T Consensus 232 ~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 232 SLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CceEEEECCCCcchHHHHHHHhcCCCEEEEEec
Confidence 469998765544445777889999999887643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.18 E-value=9.5 Score=30.94 Aligned_cols=98 Identities=20% Similarity=0.125 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEE-ccccc-ccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVA-YFWLR-HLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~-~d~~~-~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+ .++++++.+++..+.+++ +.. ..+ .... .+... ...+
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~g~--------~~~i~~~~~~~~~~~~~~~-- 229 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE-LGA--------VATVNASEVEDVAAAVRDL-- 229 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-hCC--------CEEEccccchhHHHHHHHH--
Confidence 56778888888753 666666666553 588999888887777754 211 011 1111 12111 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....-........+.|+++|.++...
T Consensus 230 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 230 TGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred hCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeC
Confidence 12257999876543445677888999999987653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.18 E-value=5.1 Score=32.70 Aligned_cols=97 Identities=14% Similarity=-0.013 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++.....+++.- . . .++.. +.... ...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~g-~---------~-~v~~~~~~~~~~~~~~~- 238 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARKFG-A---------D-VVLNPPEVDVVEKIKEL- 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHHcC-C---------c-EEecCCCcCHHHHHHHH-
Confidence 56777777666653 6666777776643 25778888887776655421 0 1 11111 11110 011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+...+|+++....-...+....+.++++|+++..
T Consensus 239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 12234699987655344567788999999998775
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.5 Score=35.42 Aligned_cols=56 Identities=21% Similarity=0.153 Sum_probs=39.6
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
..+.-.++|. +.++.+||-|++|-.....++... |. +|++||.|+......+-+++
T Consensus 23 Dp~vD~~aL~--i~~~d~vl~ItSaG~N~L~yL~~~--P~-~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 23 DPRVDMEALN--IGPDDRVLTITSAGCNALDYLLAG--PK-RIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CcHHHHHHhC--CCCCCeEEEEccCCchHHHHHhcC--Cc-eEEEEeCCHHHHHHHHHHHH
Confidence 3444556676 899999999987755555554432 43 99999999988777765554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.88 E-value=14 Score=33.59 Aligned_cols=79 Identities=18% Similarity=0.066 Sum_probs=44.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----cC--
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----LT-- 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~-- 122 (206)
.++.+|-.|++ |..+..+++.+ ..+.+|+.++.++...+.+.+.+.. ..++.++..|..+... +.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 45778877753 44444444332 2345899999998776666554432 1356777777322111 00
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-..+.+|+|+.+..
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 01235699988765
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.58 E-value=4.1 Score=32.45 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=40.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
-.++..|||--+|+|..+....... .+.+|+|+++...+.+.+++..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 5789999999999999988776533 2899999999999999999876
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.42 E-value=7.8 Score=31.35 Aligned_cols=100 Identities=23% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEEcccccc-cccCC
Q psy10573 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVAYFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~~~-~~~~~ 123 (206)
+.++.+||-.|++ .|..+..+++..+ .+++.+..+++..+.+++ +.. ..+ .....++... ... .
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~g~--------~~v~~~~~~~~~~~~~~~-~ 230 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-LGA--------DAFVDFKKSDDVEAVKEL-T 230 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-cCC--------cEEEcCCCccHHHHHHHH-h
Confidence 6778899888876 4677777777664 488999888877666643 211 111 0101011110 001 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+...+|+++...........+.+.++++|+++....
T Consensus 231 ~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 231 GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecC
Confidence 234579999755545566778889999999987643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >KOG2782|consensus | Back alignment and domain information |
|---|
Probab=85.41 E-value=1 Score=34.58 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
|.++..+++.+. .-++...+|..-|.|..+..+.+.. +..++|+.|.+|.+.+.++-..+
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 557788888876 6788999999999999999998877 77799999999988877765553
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=85.26 E-value=7.7 Score=31.45 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++..|+-.|+|. |..+..+++..+. ..+++++.++...+.+++.-.. .++.. +.... ...
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~ga~-----------~v~~~~~~~~~~~i~~~- 232 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALAREFGAT-----------DIVAERGEEAVARVREL- 232 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCc-----------eEecCCcccHHHHHHHh-
Confidence 56677777678764 6666677776542 2488888887666655542110 11111 11110 001
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-...+..+.+.++++|.++...
T Consensus 233 ~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 233 TGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEec
Confidence 123346999876544556788889999999987653
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=85.20 E-value=17 Score=28.68 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++..|+-.|| | .|..+..+++..+ ..++.++.++...+.+++.-.. .-+.....+......-..+.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARALGAD--------HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHcCCc--------eeeecCCccHHHHHHHHcCC
Confidence 567889998997 2 4666666666554 4788888888777766542110 00111111111110000123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....- .....+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 207 RGVDVVYDPVGG-DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CCcEEEEECccH-HHHHHHHHhhccCCEEEEEc
Confidence 357999876554 45566788889999887654
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >KOG0022|consensus | Back alignment and domain information |
|---|
Probab=85.14 E-value=3.2 Score=33.78 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=68.5
Q ss_pred HHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWL 116 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~ 116 (206)
.+....+ +.+|..+.-+|.|. |.....-++.. -.++++|||++++-.+.|++.-.. +++.- |..
T Consensus 183 Aa~~~Ak--v~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~fGaT-----------e~iNp~d~~ 248 (375)
T KOG0022|consen 183 AAWNTAK--VEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKEFGAT-----------EFINPKDLK 248 (375)
T ss_pred hhhhhcc--cCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHhcCcc-----------eecChhhcc
Confidence 3344444 78999999999997 44444445544 345999999999999999864322 22221 211
Q ss_pred c---ccccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEecC
Q psy10573 117 R---HLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVGE 160 (206)
Q Consensus 117 ~---~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~~ 160 (206)
. ..-..+-++.+|..+-.-.-.+...++....+.| |.-++.-..
T Consensus 249 ~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 249 KPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred ccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEec
Confidence 1 0000123567788887777677777788888888 766655443
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.04 E-value=9.1 Score=29.58 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEE--eCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
..+.+||-+|.|.-..-.. ......+++|+.+ +++++....++. .+++++..++.. ..+ .
T Consensus 23 ~~~~~VLVVGGG~VA~RK~-~~Ll~~gA~VtVVap~i~~el~~l~~~------------~~i~~~~r~~~~-~dl----~ 84 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKG-KTFLKKGCYVYILSKKFSKEFLDLKKY------------GNLKLIKGNYDK-EFI----K 84 (223)
T ss_pred CCCCEEEEECCCHHHHHHH-HHHHhCCCEEEEEcCCCCHHHHHHHhC------------CCEEEEeCCCCh-HHh----C
Confidence 3577999999987443321 1111123466666 777776655431 467777765321 111 1
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+++|++...-+.+.+.+....+.-|.++..+..
T Consensus 85 g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 85 DKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 2388888877777878888877776766665443
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.99 E-value=6.5 Score=31.81 Aligned_cols=97 Identities=26% Similarity=0.253 Sum_probs=58.5
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-ccc
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~ 121 (206)
+.++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ +.. -.++..+ +... ...
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~-~g~----------~~~~~~~~~~~~~~i~~~ 229 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK-LGA----------DYTIDAAEEDLVEKVREL 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH-hCC----------cEEecCCccCHHHHHHHH
Confidence 6778888878865 3666666666654 35 7888888877776643 211 1111111 1110 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-........+.|+++|.++...
T Consensus 230 -~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 230 -TDGRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred -hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 123347999976554556677788999999988654
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=84.99 E-value=3.3 Score=30.58 Aligned_cols=89 Identities=20% Similarity=0.152 Sum_probs=52.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+++|.-+|+|. |......++.++ .+|+++|.+......... ..+.+...+ .-....
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~------------~~~~~~~l~-ell~~a------ 92 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADE------------FGVEYVSLD-ELLAQA------ 92 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHH------------TTEEESSHH-HHHHH-------
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccc------------ccceeeehh-hhcchh------
Confidence 3578999999985 766666666554 599999998876552221 112222111 001223
Q ss_pred eeEEEecCChH----H-HHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE----E-YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~----~-~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|+...+.. + +-++....+|+|.+|+-+.-
T Consensus 93 -Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 93 -DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSS
T ss_pred -hhhhhhhccccccceeeeeeeeeccccceEEEeccc
Confidence 8887766642 2 33677788888887765433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=84.86 E-value=1.5 Score=34.88 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHh-hccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 36 IHAQMLELL-KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 36 ~~~~~~~~l-~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
+...+.+.+ .+....+++|||+|||+|--...+.... ...+...|.+.+.+
T Consensus 101 l~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 101 LLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 344444333 2224678999999999998888776543 24777778888776
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=84.86 E-value=9.3 Score=29.02 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=54.3
Q ss_pred CCCeEEEEcccC-chH-HHHHHHHhCCCceEEEEeCC--HHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 50 PGARILDIGSGS-GYL-TACLAYMAGPEGRVYGVEHV--MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~-~~~l~~~~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.+.+||-+|.|. |.- +..+++ .+++|+.++.. ++....+. . .++.++..++.. ..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~l~~----~--------~~i~~~~~~~~~-~dl---- 67 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTLLAE----Q--------GGITWLARCFDA-DIL---- 67 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHHHH----c--------CCEEEEeCCCCH-HHh----
Confidence 467999999986 322 223333 33588888543 33333322 1 367887776321 111
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+|+|++......+...+....+.-|+++-.+..
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 23499998888777777777777777877754443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.77 E-value=7.5 Score=33.57 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
..+++|+.||.|++..-+-... - --+.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-G-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-C-EEEEEEechHHHHHHHHHHc
Confidence 4589999999999999886543 2 15678899999888888775
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=84.73 E-value=9.2 Score=30.61 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=57.4
Q ss_pred CCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-ccc-cc-ccccCCC
Q psy10573 50 PGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFW-LR-HLLLTNP 124 (206)
Q Consensus 50 ~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~-~~-~~~~~~~ 124 (206)
++.+||-.|+ | .|..+..+++..+ .+++.++.+++..+.+++. .. . .++. .+. .. ...+ .
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~-g~--------~--~v~~~~~~~~~~~~~~--~ 210 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKL-GA--------K--EVIPREELQEESIKPL--E 210 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHc-CC--------C--EEEcchhHHHHHHHhh--c
Confidence 4668888886 3 3666677777654 4788888888877777542 11 0 1111 110 00 0111 2
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....- .......+.++++|+++....
T Consensus 211 ~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 211 KQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred cCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 3456998875554 456778889999999987754
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.72 E-value=9.1 Score=31.94 Aligned_cols=99 Identities=14% Similarity=0.027 Sum_probs=56.5
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
++.+|+-+|+|. |..+...+...+ .+|+.+|.++...+.+...+.. .+.....+....... + ..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~-l--~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDA-V--KRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHH-H--ccC
Confidence 346788899984 677677666654 4799999998776665443321 111111110000000 0 234
Q ss_pred eEEEecCCh-----HH-HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK-----EE-YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~-----~~-~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+..... +. +.+...+.++++++++-......
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~G 271 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQG 271 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence 999876422 22 23666777899998876654433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.25 E-value=8.7 Score=30.46 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+|+-.|+|. |..+..+++..+ .+ ++.+..+++..+.+++. .. ..++.. ++... ...
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~~-g~----------~~~~~~~~~~~~~~l~~~ 193 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALAREL-GA----------TEVVTDDSEAIVERVREL 193 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh-CC----------ceEecCCCcCHHHHHHHH
Confidence 56788888777643 556566666654 46 88888777766654431 11 111111 11111 001
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+...+|+++.............+.|+++|.++....
T Consensus 194 -~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 194 -TGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred -cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEcc
Confidence 1234579999866545566778899999999987643
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.24 E-value=16 Score=27.70 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+++|+-.|++ |..+..+++.+ ..+.+|++++.+++......+.+.. ..++.++..|+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl 62 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDV 62 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCC
Confidence 5688878875 44444444433 2455899999888766655443322 12567777773
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.16 E-value=20 Score=28.64 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+++-.|++. |..+..++...+ .+++.++.++...+.++..-.. .-+.....+...........
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFG--ATVIATAGSEDKLERAKELGAD--------YVIDYRKEDFVREVRELTGK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCCC--------eEEecCChHHHHHHHHHhCC
Confidence 56778888888753 555555555543 4788888888776665432100 00111111111100000123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....-. ......+.++++|.++....
T Consensus 234 ~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 234 RGVDVVVEHVGAA-TWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred CCCcEEEECCcHH-HHHHHHHHhhcCCEEEEEec
Confidence 4579998876643 45677788899999887643
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.59 E-value=10 Score=31.90 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=45.3
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCee
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTR 129 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D 129 (206)
.+||-||||. |+.....+..-+. .+|+..|.+.+....+..... .+++.+..|..+.... .+-. .+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d~~al~~li~-~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIG---------GKVEALQVDAADVDALVALIK-DFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccChHHHHHHHh-cCC
Confidence 4788999964 5444444332222 599999999887777765432 2677777773222110 0011 228
Q ss_pred EEEecCChHHH
Q psy10573 130 VIQSCWTKEEY 140 (206)
Q Consensus 130 ~i~~~~~~~~~ 140 (206)
+|+...+...-
T Consensus 71 ~VIn~~p~~~~ 81 (389)
T COG1748 71 LVINAAPPFVD 81 (389)
T ss_pred EEEEeCCchhh
Confidence 88887665443
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.26 E-value=21 Score=28.20 Aligned_cols=113 Identities=19% Similarity=0.104 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|...+..++.+.. +.++.. |..-+||--++..+.+.- -++..+|.-+.-....++++.. ..++++.
T Consensus 72 ~lpa~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~q---DRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~ 139 (279)
T COG2961 72 DLPAELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQ---DRLVLTELHPSDAPLLRNNFAG-------DRRVRVL 139 (279)
T ss_pred CchHHHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchh---ceeeeeecCccHHHHHHHHhCC-------CcceEEE
Confidence 346667777777753 555555 888899988888887643 3899999999999999988864 4689999
Q ss_pred Ecc-c---ccccccCCCCCCeeEEEecCChHH------HHHHHHhccc--CCcEEEEEec
Q psy10573 112 AYF-W---LRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLV--PGGRMVMPVG 159 (206)
Q Consensus 112 ~~d-~---~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~--~gG~l~~~~~ 159 (206)
.+| + ....| |.+.=-+|+++++++. +.+.+.+.++ ++|+..+.-+
T Consensus 140 ~~DG~~~l~a~LP---P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYP 196 (279)
T COG2961 140 RGDGFLALKAHLP---PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYP 196 (279)
T ss_pred ecCcHHHHhhhCC---CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEe
Confidence 999 2 12222 2233378888888743 4444444443 5666655544
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=83.23 E-value=8.4 Score=30.33 Aligned_cols=73 Identities=15% Similarity=0.038 Sum_probs=39.1
Q ss_pred HHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH---HHH
Q psy10573 66 ACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE---YNS 142 (206)
Q Consensus 66 ~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~---~~~ 142 (206)
..+.+. ++..+|+++|.++...+.+.+.-. +.-...+....... |+|+...+... +++
T Consensus 3 ~aL~~~-g~~~~v~g~d~~~~~~~~a~~~g~-----------~~~~~~~~~~~~~~-------DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKA-GPDVEVYGYDRDPETLEAALELGI-----------IDEASTDIEAVEDA-------DLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHT-TTTSEEEEE-SSHHHHHHHHHTTS-----------SSEEESHHHHGGCC-------SEEEE-S-HHHHHHHHH
T ss_pred HHHHhC-CCCeEEEEEeCCHHHHHHHHHCCC-----------eeeccCCHhHhcCC-------CEEEEcCCHHHHHHHHH
Confidence 444443 466799999999999888864311 11111111111223 99988877654 445
Q ss_pred HHHhcccCCcEEEEE
Q psy10573 143 WLLDQLVPGGRMVMP 157 (206)
Q Consensus 143 ~~~~~L~~gG~l~~~ 157 (206)
++...+++|+++.=.
T Consensus 64 ~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 64 EIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHCGS-TTSEEEE-
T ss_pred HhhhhcCCCcEEEEe
Confidence 666666677655433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=82.73 E-value=23 Score=28.62 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cc-c---cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WL-R---HL 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~-~---~~ 119 (206)
+.++..||-.|+|. |..+..+++..+. ..+++++.++...+.+++.-. ..++..+ .. . ..
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~g~-----------~~~i~~~~~~~~~~~~~~~ 226 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAMGA-----------DIVVDPAADSPFAAWAAEL 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHcCC-----------cEEEcCCCcCHHHHHHHHH
Confidence 57788888777653 5555666666542 247788888887777764211 1111111 00 0 00
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. ...+.+|+++....-......+.+.++++|+++....
T Consensus 227 ~~-~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 227 AR-AGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred HH-hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 00 1334579998754433456777888999999886643
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=82.53 E-value=14 Score=25.82 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~ 127 (206)
.+.+++-+|+|- |......+...+. .+++.+..+.+..+...+.+.. .++.++..+ .... -..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~--------~~~~~~~~~~~~~~------~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG--------VNIEAIPLEDLEEA------LQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG--------CSEEEEEGGGHCHH------HHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc--------cccceeeHHHHHHH------Hhh
Confidence 578999999973 4444444333333 2699999998776666665522 346666554 1110 123
Q ss_pred eeEEEecCChH
Q psy10573 128 TRVIQSCWTKE 138 (206)
Q Consensus 128 ~D~i~~~~~~~ 138 (206)
+|+|+...+..
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 49999876654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=82.38 E-value=8.8 Score=30.88 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=53.7
Q ss_pred CCeEEE-Eccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---cccccc-cccCCC
Q psy10573 51 GARILD-IGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFWLRH-LLLTNP 124 (206)
Q Consensus 51 ~~~vLD-lG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~~~~-~~~~~~ 124 (206)
+..++- .|+| .|..+..+++..+ .++++++.++...+.+++. .. -.++. .++... ... .+
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~~-g~----------~~~i~~~~~~~~~~v~~~-~~ 209 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKKI-GA----------EYVLNSSDPDFLEDLKEL-IA 209 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC----------cEEEECCCccHHHHHHHH-hC
Confidence 344443 2554 3677777777654 4789999898888877652 11 11221 111111 111 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....-... ....+.++++|+++....
T Consensus 210 ~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 210 KLNATIFFDAVGGGLT-GQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCCCcEEEECCCcHHH-HHHHHhhCCCCEEEEEEe
Confidence 2356999876554433 556788899999987643
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=81.30 E-value=13 Score=30.82 Aligned_cols=102 Identities=18% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
..++..||-+|.++ |.++..+++..+ ...+....+.+..+.+++.=.+ .-+++...|+.+. ..+ -
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~lGAd--------~vvdy~~~~~~e~~kk~--~ 222 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKLGAD--------EVVDYKDENVVELIKKY--T 222 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHcCCc--------EeecCCCHHHHHHHHhh--c
Confidence 67788888887765 566777777664 2455556677788888764322 1122222231111 111 1
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+.||+|+....-..........+..|+..++...+.
T Consensus 223 ~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CCCccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 4566999886665444344455556666666665543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.97 E-value=16 Score=29.28 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc-ccccccCCCCCCee
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW-LRHLLLTNPHGSTR 129 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~~D 129 (206)
.+|+-+|.|. |.......+..+....+++.|.+....+.+.+.-.. . +. ..+. .. .....|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~--------d--~~-~~~~~~~------~~~~aD 66 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI--------D--EL-TVAGLAE------AAAEAD 66 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc--------c--cc-ccchhhh------hcccCC
Confidence 4677788885 554444444445656788999988777777532110 0 00 0010 00 122338
Q ss_pred EEEecCChHH---HHHHHHhcccCCcEEE
Q psy10573 130 VIQSCWTKEE---YNSWLLDQLVPGGRMV 155 (206)
Q Consensus 130 ~i~~~~~~~~---~~~~~~~~L~~gG~l~ 155 (206)
+|+..-+... +++++...|++|.++.
T Consensus 67 ~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 67 LVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 8888777654 4455555666666554
|
|
| >KOG1197|consensus | Back alignment and domain information |
|---|
Probab=80.90 E-value=27 Score=27.88 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=60.7
Q ss_pred cCCCCCeEEEE--cccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc-cccccCC
Q psy10573 47 KIKPGARILDI--GSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL-RHLLLTN 123 (206)
Q Consensus 47 ~~~~~~~vLDl--G~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~ 123 (206)
.+++|..||-- ..|.|.....+++..+ .++++.-.+.+-.+.++++-.. --|.+...|.. .-..+.
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~--------h~I~y~~eD~v~~V~kiT- 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE--------HPIDYSTEDYVDEVKKIT- 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc--------ceeeccchhHHHHHHhcc-
Confidence 36889887754 3345677777776653 4777777777778888775443 12555555522 122221
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.....|+++..-.-.. ++.-+.+||++|.++-.
T Consensus 212 ngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVSF 244 (336)
T ss_pred CCCCceeeeccccchh-hHHHHHHhccCceEEEe
Confidence 2334588887655543 35667889999988643
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=80.29 E-value=1.4 Score=36.91 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=14.8
Q ss_pred HhcccCCcEEEEEecCCC
Q psy10573 145 LDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 145 ~~~L~~gG~l~~~~~~~~ 162 (206)
.+-|.|||+++++..+..
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 456899999999987764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 206 | ||||
| 1i1n_A | 226 | Human Protein L-Isoaspartate O-Methyltransferase Wi | 1e-29 | ||
| 1r18_A | 227 | Drosophila Protein Isoaspartyl Methyltransferase Wi | 7e-25 | ||
| 2pbf_A | 227 | Crystal Structure Of A Putative Protein-L-Isoaspart | 5e-17 | ||
| 2yxe_A | 215 | Crystal Structure Of L-Isoaspartyl Protein Carboxyl | 3e-12 | ||
| 1jg4_A | 235 | Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- | 2e-09 | ||
| 3lbf_A | 210 | Crystal Structure Of Protein L-Isoaspartyl Methyltr | 2e-08 | ||
| 1dl5_A | 317 | Protein-L-Isoaspartate O-Methyltransferase Length = | 9e-05 | ||
| 1o54_A | 277 | Crystal Structure Of Sam-Dependent O-Methyltransfer | 1e-04 | ||
| 1i9g_A | 280 | Crystal Structure Of An Adomet Dependent Methyltran | 2e-04 | ||
| 3mb5_A | 255 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 7e-04 | ||
| 3lhd_C | 253 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 7e-04 |
| >pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226 | Back alignment and structure |
|
| >pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215 | Back alignment and structure |
|
| >pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235 | Back alignment and structure |
|
| >pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210 | Back alignment and structure |
|
| >pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317 | Back alignment and structure |
|
| >pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase (Tm0748) From Thermotoga Maritima At 1.65 A Resolution Length = 277 | Back alignment and structure |
|
| >pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase Length = 280 | Back alignment and structure |
|
| >pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Methionine Length = 255 | Back alignment and structure |
|
| >pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Homocysteine Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 4e-58
Identities = 78/211 (36%), Positives = 109/211 (51%), Gaps = 25/211 (11%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 31 MLATDRSHY---AKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 87
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YF-WL 116
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ V +
Sbjct: 88 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 147
Query: 117 RH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIID 171
+ + + V Q+ L+DQL PGGR+++PVG Q L D
Sbjct: 148 EEAPYDAIHVGA--AAPVVPQA----------LIDQLKPGGRLILPVGPAGGNQMLEQYD 195
Query: 172 KLADGYTIVTTVVRGVRTNPLYRDRFQQKKY 202
KL DG +I + GV PL Q ++
Sbjct: 196 KLQDG-SIKMKPLMGVIYVPLTDKEKQWSRW 225
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-55
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 30/202 (14%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 38 MKETDRKHY---SPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 94
Query: 61 SGYLTACLAYMAGPEG-----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--- 112
SGYLTAC +G R+ G+EH EL S N++ + +LD G++ V
Sbjct: 95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154
Query: 113 YF-WLRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQN 166
+ + + + + L++QL GGR+++PVG Q
Sbjct: 155 RKGYPPNAPYNAIHVGA--AAPDTPTE----------LINQLASGGRLIVPVGPDGGSQY 202
Query: 167 LTIIDKLADGYTIVTTVVRGVR 188
+ DK A+G + T + GV
Sbjct: 203 MQQYDKDANG-KVEMTRLMGVM 223
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 3e-52
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR + + PY I +G IS+PH+HA L+ L + +KPG+R +D+GSG
Sbjct: 34 MLQVDRGKY---IKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSG 90
Query: 61 SGYLTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116
SGYLT C+A V G+E V +L S++NI + ELL + +
Sbjct: 91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII----- 145
Query: 117 RHLLLTNPHGSTRVIQSCWTKEE--YN------------SWLLDQLVPGGRMVMPVGEPF 162
H + + KE ++ L+D L G++++P+ E +
Sbjct: 146 --------HKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDY 197
Query: 163 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195
Q L I K + V L ++
Sbjct: 198 T-QVLYEITKKNGKII--KDRLFDVCFVSLKKN 227
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-45
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
L+ R + + + I G +S+PH+ A MLE+ +KPG IL++G+
Sbjct: 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGT 100
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV----AYFW 115
GSG+ A ++ + + VY +E + EL E + +N+++ V + + +
Sbjct: 101 GSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF 153
Query: 116 LRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+++T G+ ++ + L++QL GG++++PVG Q L +
Sbjct: 154 PPKAPYDVIIVTA--GAPKIPEP----------LIEQLKIGGKLIIPVGSYHLWQELLEV 201
Query: 171 DKLADGYTIVTTVVRGVRTNPL 192
K DG GV PL
Sbjct: 202 RKTKDGIK--IKNHGGVAFVPL 221
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 4e-45
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R+ F + Y +IGYG IS+ H+ M ELL +KPG ++L+IG+
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV----AYFW 115
G GY A A + G +G V +E + ELAE + + + K L V + +
Sbjct: 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIVIVGDGTLGY 141
Query: 116 LRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+ T ++ + L+ QL GG+++MPVG Q L +
Sbjct: 142 EPLAPYDRIYTTA--AGPKIPEP----------LIRQLKDGGKLLMPVGR--YLQRLVLA 187
Query: 171 DKLADGYTIVTTVVRGVRTNPL 192
+K D I+ V PL
Sbjct: 188 EKRGDE--IIIKDCGPVAFVPL 207
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-39
Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 37/204 (18%)
Query: 1 MLRVDRKNFFTRVV-------NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
L + R+ F T+ + + S P + A +E + + G R
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSY-DDGEEYSTSSQPSLMALFMEWVG--LDKGMR 78
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-- 111
+L+IG G+GY A ++ + G +G V VE+ ++ E + +N+++ L V FV
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFVCG 133
Query: 112 --AYFWLRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKG 164
Y + +T G V ++ QL GGR+++P+
Sbjct: 134 DGYYGVPEFSPYDVIFVT--VGVDEVPET----------WFTQLKEGGRVIVPINLKLSR 181
Query: 165 QNLTIIDKLADGYTIVTTVVRGVR 188
+ + K D +V R
Sbjct: 182 RQPAFLFKKKDP-YLVGNYKLETR 204
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-38
Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 1 MLRVDRKNFFTRVVNEPYR-------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+VDR F + E + ++ I G + ++ ++ ML+ L + G +
Sbjct: 20 FNKVDRSLF----LPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQK 73
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-- 111
+L+IG+G GY TA +A + +V VE ++ + K + N ++ +
Sbjct: 74 VLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN-------NIKLILG 123
Query: 112 -AYF-WLRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKG 164
+ +++ + + +QL GG M++P+G +
Sbjct: 124 DGTLGYEEEKPYDRVVVW---ATAPTLLCK---------PYEQLKEGGIMILPIGVG-RV 170
Query: 165 QNLTIIDKLADGYTIVTTVVRGVRTNPL 192
Q L + K + + + V +
Sbjct: 171 QKLYKVIKKGNSPS--LENLGEVMFGRI 196
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-36
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 38/203 (18%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+ V R+ F + + + IG G IS P++ A+M ELL+ + P +R+L+IG+
Sbjct: 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---AYF-W 115
GSGY TA LA++ V VE + L + + + LD V + W
Sbjct: 87 GSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHGDGWQGW 138
Query: 116 LRH-----LLLTNPHGSTRVI-QSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTI 169
+++T + I + L+ QL GG +V+PVGE + Q L
Sbjct: 139 QARAPFDAIIVT---AAPPEIPTA----------LMTQLDEGGILVLPVGE--EHQYLKR 183
Query: 170 IDKLADGYTIVTTVVRGVRTNPL 192
+ + + V VR PL
Sbjct: 184 VRRRGGEFI--IDTVEAVRFVPL 204
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-14
Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV E
Sbjct: 82 MKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR 139
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST------RVIQSCWTKE 138
+ + + KN ++ H ++ V
Sbjct: 140 KDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH 199
Query: 139 EYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKL 173
L GG + V Q + ++D +
Sbjct: 200 VTLPVFYPHLKHGGVCAVYV--VNITQVIELLDGI 232
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 5e-14
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ I P + + +L +K G RI+D G GSG + A LA G G+V+ E
Sbjct: 89 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 146
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
E A+ + N+ K +V+ ++ + + + Y
Sbjct: 147 EEFAKLAESNLTKWGLIERVTIKVRDISEGF-------DEKDVDALFLDVPDPWNYIDKC 199
Query: 145 LDQLVPGGRMVMPV 158
+ L GGR
Sbjct: 200 WEALKGGGRFATVC 213
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 9e-14
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ G I P A ++ I PG I++ G GSG LT LA + GPEGRV E
Sbjct: 68 DKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
Query: 83 HVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNS 142
+ A+ + +NI + +++ + VI E
Sbjct: 126 IREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EEENVDHVILDLPQPERVVE 178
Query: 143 WLLDQLVPGGRMVMPV 158
L PGG V
Sbjct: 179 HAAKALKPGGFFVAYT 194
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 4e-13
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 17/127 (13%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
+ +K +K G ++D G+G TA LA + G GRV+G + + ++ K + N
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSW-------------LLDQL 148
RV + + + + +S ++ L
Sbjct: 72 --LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129
Query: 149 VPGGRMV 155
V GG +
Sbjct: 130 VTGGIIT 136
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 2e-11
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 8/135 (5%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ A + P + M+ LL + PG R+L+ G+GSG LT LA G +G V E
Sbjct: 73 MKRSATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR 130
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
+ +N+ + + + L V +
Sbjct: 131 PHHLAQAERNVRAFWQVENVRFHLGKLEEAEL------EEAAYDGVALDLMEPWKVLEKA 184
Query: 145 LDQLVPGGRMVMPVG 159
L P +V +
Sbjct: 185 ALALKPDRFLVAYLP 199
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-10
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI D + ++ ++PG IL++G GSG +++ + Y +G + VE
Sbjct: 92 QIISEIDA------SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER 143
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSW 143
+ + ++ N+ + + +A F VI +
Sbjct: 144 DEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-------DQMYDAVIADIPDPWNHVQK 196
Query: 144 LLDQLVPGGRMVMPVGEPFKGQNLTIIDKL-ADGYTIVTTV--------VRGVRTNPLYR 194
+ + PG + P Q+ + L A G + TV VR T P
Sbjct: 197 IASMMKPGSVATFYL--PNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGATRPASD 254
Query: 195 DR 196
D
Sbjct: 255 DL 256
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 4e-10
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 11/134 (8%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
I P + L + R+L+ G+GSG L A L+ +AG VE
Sbjct: 68 FERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEF 125
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
+ A+ ++K + G + + H + ++ W Y +
Sbjct: 126 YKTAQKNLKKFNLGK---NVKFFNVDFKDAEVPE---GIFHAAFVDVREPW---HYLEKV 176
Query: 145 LDQLVPGGRMVMPV 158
L+ G + +
Sbjct: 177 HKSLMEGAPVGFLL 190
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 9e-10
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++L+ +K G +LD+G+G+G+ L+ M G +G+VY +
Sbjct: 20 RLELFDPE-KVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAI 68
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 2e-09
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELLD 104
GA +LD+G G+G + + G G+V GV ++ +E+A ++ +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 105 QGRVQFV 111
+ V+F+
Sbjct: 141 RSNVRFL 147
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 2e-09
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 15 NEPYRIKSRQIGYG-----ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
++ + R+ YG +P L +LK + G +LD+G G+LT +A
Sbjct: 6 AAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIA 65
Query: 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
GP R+ G++ L S+ +NI SE
Sbjct: 66 CKWGP-SRMVGLDIDSRLIHSARQNIRHYLSE 96
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 5e-09
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
A +++ H L+ ++PG + + G L Y A P ++ G++
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGID 150
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-08
Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 10/149 (6%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
G + P AQ++ I PGAR+L+ G+GSG LT L GP G+V E +
Sbjct: 79 GPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADH 136
Query: 88 AESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS-TRVIQSCWTKEEYNSWLLD 146
AE + +N+ P GS R + E +
Sbjct: 137 AEHARRNVSG-----CYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSR 191
Query: 147 QLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
LV GG +++ V Q I++ L
Sbjct: 192 LLVAGGVLMVYV--ATVTQLSRIVEALRA 218
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 28/131 (21%), Positives = 41/131 (31%), Gaps = 16/131 (12%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ H+ A + L KP + DIG GSG + P+ E E E
Sbjct: 8 LTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRER 64
Query: 91 SIKNIDKGNSELLDQGRVQFV---AYFWLRHLLLTNPHGSTRV-IQSCWTKEEYNSWLLD 146
+ N L V A + NP + I T +
Sbjct: 65 ILSNAIN-----LGVSDRIAVQQGAPRAFDD-VPDNPD---VIFIGGGLTAPGVFAAAWK 115
Query: 147 QLVPGGRMVMP 157
+L GGR+V
Sbjct: 116 RLPVGGRLVAN 126
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-08
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+KPG +IL+IG G G L+A LA G G V G+
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-08
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ A +L+ L + +K G RIL +G SG + ++ + GP GR+YGVE + +
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
Query: 95 IDK 97
+
Sbjct: 122 VRD 124
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-08
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
LEL+ + GA +LD+GS YL G E V +S++KN++
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 5e-08
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 33 SPHIHAQMLELLKD---KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ + + L + KI I+D G G GYL L + + G++
Sbjct: 2 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 54
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 5e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L+ + + + GAR+LD+GS YL G E V +S++KN+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 8e-08
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKG 98
+ L + + + ++D G+G T A++AG +VY E + + ++
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
Query: 99 NSELLDQGRVQFVAY-----FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
N+EL+ G Y L P VI T E +LD+L GGR
Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGR 130
Query: 154 MV 155
+
Sbjct: 131 LA 132
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 17/131 (12%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L + G + DIG GSG ++ GR +E + E+
Sbjct: 38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIEN 92
Query: 91 SIKNIDKGNSELLDQGRVQFV---AYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQ 147
KNID R++ V A L L P V + L +
Sbjct: 93 IQKNIDT----YGLSPRMRAVQGTAPAALAD--LPLPE---AVFIGGGGSQALYDRLWEW 143
Query: 148 LVPGGRMVMPV 158
L PG R+V
Sbjct: 144 LAPGTRIVANA 154
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 40/146 (27%)
Query: 30 DISSPHIHA--QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
P + + ILD+G+G+G L+A L PE V
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLM-EKYPEATFTLV------ 74
Query: 88 AESSIKNIDKGNSELLDQGRVQF-----------------VAYFWLRHLLLTNPHGSTRV 130
+ S K ++ + +V++ V+ + HL +
Sbjct: 75 -DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL---EDEDKKEL 130
Query: 131 IQSCWTKEEYNSWLLDQLVPGGRMVM 156
+ + L G +
Sbjct: 131 YKRSY----------SILKESGIFIN 146
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-07
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESS 91
++ E + + G R + IG G LT L+++ G RV VE ++AE S
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS 162
Query: 92 IKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLV 149
K I+ + V + + + ++ + K + +
Sbjct: 163 RKVIEGLGVD-----GVNVI----TGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVD 213
Query: 150 PGGRMVMPVGEPFKG 164
R++ +
Sbjct: 214 TETRIIYRTYTGMRA 228
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
LE + I RI DIGS YL C A E V +S+ K +
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS 67
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106
PGA++L+ G G G T LA P+ + ++ S ++++K G
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDI-------SPESLEKARENTEKNGI 86
Query: 107 -RVQFV 111
V+F+
Sbjct: 87 KNVKFL 92
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-07
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L+ ++ + DIG+GS ++ + + P GR++ +E +
Sbjct: 23 ITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGF 79
Query: 91 SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVP 150
N+ K V V F L + S EE + +L
Sbjct: 80 IRDNLKK-----FVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKS 134
Query: 151 GGRMVMPV 158
G +V+
Sbjct: 135 EGVIVLNA 142
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-07
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
++ L + +D+G G+G +T LA RVY ++ E ++ N+ +
Sbjct: 23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR 77
Query: 98 GNSELLDQGRVQFV---AYFWLRHL-----LLTNPHGST--RVIQSCWTKEEYNSWLLDQ 147
V + A L + + G +++ D+
Sbjct: 78 ----HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIK----------DK 123
Query: 148 LVPGGRMVMP 157
L PGGR+++
Sbjct: 124 LKPGGRIIVT 133
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-06
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
RI D+G+G+G +A + V E E+AE + ++++ ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF-SA 90
Query: 107 RVQFV 111
R++ +
Sbjct: 91 RIEVL 95
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ + +K A +LD+G G GY T L+ + GV
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGV 81
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-06
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ L + I+D G G+G+ L A ++Y ++
Sbjct: 8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCID 46
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 7e-06
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNI 95
L K R+LDIG G G L GV+ +++ E +
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNVV 86
Query: 96 DKGNSELLDQGRVQFVAYFWLRHLL--LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
E L +++ + H + L ++ C++K +
Sbjct: 87 KSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL-FELLSLCYSK----------MKYSSY 135
Query: 154 MVMPV 158
+V+
Sbjct: 136 IVIES 140
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-06
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 33/138 (23%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-----------EHVM 85
+ ++ + ++ ILDIG GSG ++ +A V G+
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKIS---LELASKGYSVTGIDINSEAIRLAETAAR 73
Query: 86 E--LAESSIKNID--KGNSELLDQGRVQFVAY---FWLRHLLLTNPHGSTRVIQSCWTKE 138
L + + + N+ L F +L + +P +R+I+ +
Sbjct: 74 SPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTS--VPDPKERSRIIKEVFRV- 130
Query: 139 EYNSWLLDQLVPGGRMVM 156
L PG + +
Sbjct: 131 ---------LKPGAYLYL 139
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 9e-06
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + +++ + ++D+G G G T +A P ++ G +
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD 68
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-05
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 34 PHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
++ Q + + +K R++D+G G G L L + E ++ GV+ E +
Sbjct: 11 ISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIA 69
Query: 92 IKNIDKGNSELLDQGRVQFV 111
+ +D+ R+Q +
Sbjct: 70 QERLDRLRLPRNQWERLQLI 89
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESS 91
+ +A LLK K +LDIG SG L A + RV G+E E A+
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGAL---GAAIKENGTRVSGIEAFPEAAEQAKEK 73
Query: 92 IKNIDKGNSELLD 104
+ ++ G+ E +D
Sbjct: 74 LDHVVLGDIETMD 86
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ +S P L + P R+L+ G G G A A R
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAY 76
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ L + I+ G ++L +G+ SG + ++ + G+ YGVE
Sbjct: 66 LKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 23/128 (17%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNID-- 96
L+ GA+ILD G G G + L+ G V G +++ A+
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIGGYLS-KQGH--DVLGTDLDPILIDYAKQDFPEARWV 94
Query: 97 KGNSELLDQGRVQF---VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
G+ + F V+ + L G + + L GR
Sbjct: 95 VGDLSVDQISETDFDLIVSAGNVMGFL--AEDGREPALANIH----------RALGADGR 142
Query: 154 MVMPVGEP 161
V+ G
Sbjct: 143 AVIGFGAG 150
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ AQ +++L + ++L++G+ +GY ++ +G+V +
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 89 ESSIKNIDK 97
+ + +
Sbjct: 99 KHAHPYWRE 107
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ +S+ + Q++ + + + +++G +GY A +G++ ++ E
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY 108
Query: 89 ESSIKNIDKGN 99
E + I K
Sbjct: 109 EIGLPFIRKAG 119
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-05
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
D + L + P ++D G+G T L+ P RV G+
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS-QFFP--RVIGL 84
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 33 SPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ H H L L+ + + R+LDIG+G+G+ + GV
Sbjct: 2 AHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGV 49
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ + AQ+L LL ++ +++DIG+ +GY + +G + + +
Sbjct: 44 YAMQTAPEQAQLLALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST 102
Query: 89 ESSIKNIDK 97
+ + +K
Sbjct: 103 ALAKEYWEK 111
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+++ Q L +L I ++IG +GY A +G++ ++ E
Sbjct: 59 NIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 117
Query: 89 ESSIKNIDKGN 99
E + I K
Sbjct: 118 ELGLPVIKKAG 128
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ Q L +L RI++IG+ +GY + C A +G++ + E
Sbjct: 40 ANMQISPEEGQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 89 ESSIKNIDK 97
+ K +
Sbjct: 99 NVARKYWKE 107
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ L+LL IL+IG+ GY T LA GRV +E + A
Sbjct: 38 PAHDVSPTQGKFLQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 89 ESSIKNIDK 97
+ + NI++
Sbjct: 97 DIARSNIER 105
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-05
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
D AQ+L L I+ + LD+G+ +GY LA +GRV E +
Sbjct: 49 GDSMMTCEQAQLLANLARLIQA-KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP 107
Query: 89 ESSIKNIDK 97
E +
Sbjct: 108 ELGRPLWRQ 116
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
+ L ++ GA+IL++G G+GY +
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQAEAML 62
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-05
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 30 DISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHV 84
I+ + E + ++ I G +DIGSG G L+ LA + + + +H+
Sbjct: 22 KTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHM 78
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFV 111
E+A KNI N R+Q V
Sbjct: 79 NEIAL---KNIADANLN----DRIQIV 98
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A + AQ L LL ++L+IG GY +A P+G++ +
Sbjct: 52 APMQISPEQAQFLGLLISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT 110
Query: 89 ESSIKNIDK 97
+ K K
Sbjct: 111 AIAKKYWQK 119
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
Q L LL + RIL+IG+ GY T +A +G++ +E A
Sbjct: 43 PAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 89 ESSIKNIDK 97
+ + +N+
Sbjct: 102 QVARENLQL 110
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
I ++ LL + G+ I DIG+G+G + L A VY VE + + +
Sbjct: 18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVAL---ANQGLFVYAVEPSIVMRQ 70
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 1e-04
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-------EHVMELAE 89
+ LL +K ++LD+ G G + L V GV E A+
Sbjct: 25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAK 81
Query: 90 SSIKNID--KGNSELLD 104
S N++ G++ L
Sbjct: 82 SRESNVEFIVGDARKLS 98
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 1e-04
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
Query: 10 FTRVVNEPYRIKSRQIG----YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLT 65
+ V +P ++ + + YG +S + AQM++ +K + +D+GSG G +
Sbjct: 133 YNHSVTDPEKLNNYEPFSPEVYGE--TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVV 188
Query: 66 ACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSEL-LDQGRVQFVAYFWLRHLLL 121
+A + YGVE + AE+ + K +L
Sbjct: 189 LQVAAATNCK-HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 247
Query: 122 TNPHGSTRVIQSCW----TKEEYNSWLLDQLVPGGRMV 155
++ + + + + + GGR+V
Sbjct: 248 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
SP + + L + D + + I DIG G+G T LA G+V G+
Sbjct: 30 SPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGL 75
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 1e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ A ++ LK+ IKPG +L +G SG + ++ + G EG+++G+E
Sbjct: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+ L L P ARIL+IG+ GY +A A PE + +E E + K++
Sbjct: 43 MESLLHLLKMAAP-ARILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKA 100
Query: 98 GN 99
Sbjct: 101 LG 102
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+I+D+ SG+G + L+ + ++ GVE LA+ + +++
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSV 92
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L + + D+G G G T L + G+
Sbjct: 24 DLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRY-GVNVITGI 63
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
Y + +H M+ +PG +L++GS G + + + VE
Sbjct: 20 YAYNFDFDVMHPFMVRAFTPFFRPG-NLLELGSFKGDF---TSRLQEHFNDITCVE 71
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L+LL +PG ILD+G G+G LT + A V G
Sbjct: 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKI---AQSGAEVLGT 85
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 28/160 (17%)
Query: 29 ADISSPHIHAQMLELLK--DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
P++ + L+ +L++ SG+GY T +++G RV ++ E
Sbjct: 23 DATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWT---RHLSGLADRVTALDGSAE 79
Query: 87 -LAESSIKNIDK-----GNSELLDQGRVQF---VAYFWLRHLLLTNPHGSTRVIQSCWTK 137
+AE+ +D + R Q+ WL H+ +S
Sbjct: 80 MIAEAGRHGLDNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVP---DDRFEAFWESVR-- 133
Query: 138 EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGY 177
+ PGG + + + D +
Sbjct: 134 --------SAVAPGGVVEFVDVTDHERRLEQQDDSEPEVA 165
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 2e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPGA++L +G+ SG + ++ + GP+G VY VE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ +LE + +K +L+ G G+G LT + VYG+E
Sbjct: 34 YEDILEDVVNK--SFGNVLEFGVGTGNLT---NKLLLAGRTVYGIE 74
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A + L + ++D+G GSG +T +A VY ++++ E + +N+ K
Sbjct: 25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK 79
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ + + + + A+I DIG G+G T LA G++ G+
Sbjct: 36 KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGI 75
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 3e-04
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+++ Q L + +K +++D+G G G L + L E ++ GV+
Sbjct: 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVD 60
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIK 93
+ LL+ +++P RIL +G G+ L+ L ++ G V V V+ ++
Sbjct: 29 FSSFRALLEPELRPEDRILVLGCGNSALSYEL-FLGGFP-NVTSVDYSSVVVAAMQACYA 86
Query: 94 NIDKGNSELLDQGRVQF--------VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLL 145
++ + E +D ++ F + L LL T + T ++ S +
Sbjct: 87 HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVS 146
Query: 146 DQLVPGGRMV 155
LVPGGR +
Sbjct: 147 RVLVPGGRFI 156
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ A+ LK + PG +L++G+G+GY L P + GVE
Sbjct: 21 YVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVE 63
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++L LL +P ++ G G G + A RV ++ + E +
Sbjct: 40 VDRQTGRLLYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR 98
Query: 93 KNIDKGN 99
+ +
Sbjct: 99 RMLHDNG 105
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 33 SPHIHAQ------MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ IHA+ ++++ +K +LD+ +G G++ A +V
Sbjct: 16 TSQIHAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAF 65
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 5e-04
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + Q +E I+ + ++D G GSG L L + GV+
Sbjct: 702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVD 753
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 22/121 (18%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGNSELLDQGR 107
I+D+G G+G + L P+ +V V+ +A SS N++ E LD R
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVD-ESPMAVASSRLNVETNMPEALD--R 276
Query: 108 VQFVAYFWLRH-------LLLTNP--HGSTRVIQSCWTKEEYNSWLLD---QLVPGGRMV 155
+F+ L +L NP H + T L G +
Sbjct: 277 CEFMINNALSGVEPFRFNAVLCNPPFHQQHAL-----TDNVAWEMFHHARRCLKINGELY 331
Query: 156 M 156
+
Sbjct: 332 I 332
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 5e-04
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 33 SPHIHAQM-LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELA 88
A +E+ D G ++D G+G+G L AC +Y+ G E V + +E A
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETA 90
Query: 89 ESSIKNID 96
+ + ++
Sbjct: 91 KRNCGGVN 98
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 5e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 32/122 (26%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y + IH +ML KDKI+ +LD+G G+G L + A
Sbjct: 29 YFSSYGHYGIHEEML---KDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGIL-SMFAAK 84
Query: 72 AGPEGRVYGVEH--VMELAESSIKN--------IDKGNSELLD--QGRVQFVAYFWLRHL 119
AG + +V GV+ ++ A I+ + KG E + +V + W+ +
Sbjct: 85 AGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143
Query: 120 LL 121
LL
Sbjct: 144 LL 145
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 6e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 35 HIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ L++++ +LDIG G GY T A A PE +G+
Sbjct: 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA-DALPEITTFGL 115
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 6e-04
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV----EHVMELAESSI 92
H + L++ +K R+LD+G G+G + ++ V V E + E +
Sbjct: 41 HRLIGSFLEEYLKNPCRVLDLGGGTGKWS---LFLQERGFEVVLVDPSKEMLEVAREKGV 97
Query: 93 KNIDKGNSELLD 104
KN+ + +E L
Sbjct: 98 KNVVEAKAEDLP 109
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ + + D+G+GSG L A A+ G V
Sbjct: 50 AMLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLAT 89
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 8e-04
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ +++ L IL+IG+ GY + A + + V +E + + +
Sbjct: 55 VDRLTLDLIKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAK 112
Query: 93 KNIDKGN 99
+N+ +
Sbjct: 113 QNLATYH 119
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 206 | |||
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.93 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.92 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.92 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.92 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.91 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.91 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.87 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.87 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.74 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.72 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.7 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.7 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.7 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.7 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.69 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.69 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.68 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.67 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.66 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.65 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.65 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.65 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.64 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.64 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.64 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.64 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.64 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.63 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.63 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.63 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.63 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.63 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.62 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.62 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.62 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.62 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.61 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.61 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.61 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.61 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.61 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.61 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.61 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.61 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.6 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.6 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.6 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.6 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.6 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.6 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.6 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.6 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.6 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.6 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.6 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.6 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.6 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.59 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.59 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.59 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.59 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.59 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.59 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.59 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.59 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.58 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.58 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.58 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.58 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.58 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.58 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.58 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.58 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.57 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.57 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.57 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.57 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.56 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.56 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.56 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.56 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.56 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.56 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.56 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.56 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.56 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.56 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.55 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.55 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.55 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.55 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.55 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.55 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.54 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.54 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.54 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.54 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.54 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.54 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.54 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.54 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.54 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.53 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.53 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.53 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.53 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.53 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.53 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.53 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.53 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.53 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.53 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.53 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.52 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.52 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.52 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.52 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.52 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.52 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.52 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.52 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.52 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.51 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.51 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.51 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.5 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.5 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.5 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.49 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.49 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.49 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.49 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.49 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.49 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.49 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.48 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.48 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.48 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.48 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.48 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.48 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.47 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.47 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.47 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.46 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.46 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.46 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.46 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.46 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.44 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.43 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.43 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.43 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.43 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.43 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.42 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.42 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.42 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.42 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.42 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.41 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.41 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.41 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.4 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.4 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.39 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.39 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.39 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.38 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.38 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.38 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.37 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.37 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.37 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.37 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.37 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.37 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.36 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.36 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.36 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.36 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.35 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.34 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.33 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.33 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.33 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.32 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.31 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.31 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.31 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.3 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.3 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.29 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.28 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.27 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.26 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.26 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.26 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.26 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.26 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.25 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.25 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.23 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.23 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.23 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.23 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.22 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.21 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.21 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.2 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.2 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.19 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.19 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.19 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.19 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.18 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.18 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.17 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.17 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.17 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.16 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.16 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.15 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.14 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.14 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.13 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.11 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.1 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.09 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.09 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.02 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.01 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.99 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.98 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.96 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.96 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.96 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.9 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.9 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.88 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.86 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.83 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.82 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.79 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.68 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.65 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.65 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.65 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.57 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.42 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.4 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.35 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.3 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.24 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.2 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.2 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 98.1 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.97 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.95 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.88 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.71 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.61 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.59 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.53 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.33 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 97.28 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.25 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.05 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 97.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.98 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.95 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.93 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.92 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.81 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.79 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.77 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.77 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.72 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.69 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.68 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.68 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.67 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.67 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.66 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.65 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.62 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.57 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.56 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.56 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.55 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.54 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.52 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.41 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.39 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.38 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.38 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.38 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.36 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.36 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.36 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.31 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.25 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.15 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.14 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.08 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.05 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.04 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.01 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.98 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.96 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.96 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.92 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.91 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.85 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.79 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.73 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.73 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.68 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.68 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.64 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.57 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.56 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.37 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.33 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.24 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.24 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.22 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.19 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.03 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.01 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.91 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.78 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.72 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.67 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 94.6 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.47 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 94.44 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 94.11 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.08 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.07 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 93.98 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 93.85 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.82 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.8 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 93.6 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.48 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 93.16 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 93.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.09 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.0 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.87 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.46 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.29 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.09 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 91.8 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 91.53 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.21 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 91.07 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 90.79 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 90.78 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.68 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.54 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 89.23 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 88.86 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 88.79 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.73 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 88.69 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.66 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.17 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.15 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 88.04 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.61 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 87.05 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 86.68 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 86.19 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 86.1 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 86.01 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 85.64 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 85.58 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.44 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.38 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 84.68 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 84.53 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 84.41 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 83.89 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 83.89 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 83.62 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 83.51 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 83.11 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 82.46 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 82.46 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 82.34 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 82.11 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 81.9 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.7 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 81.57 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 81.43 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 81.26 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 80.61 |
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=168.29 Aligned_cols=184 Identities=39% Similarity=0.582 Sum_probs=153.2
Q ss_pred CccccccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-----C
Q psy10573 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----E 75 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-----~ 75 (206)
|+++||+.|++.. +|.|.+.++++++.++.|.....+++.+...+.++.+|||+|||+|.++..+++..+. .
T Consensus 38 ~~~~~r~~f~~~~---~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~ 114 (227)
T 1r18_A 38 MKETDRKHYSPRN---PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD 114 (227)
T ss_dssp HHTSCGGGTCSSC---TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT
T ss_pred HHhCCHHHcCCcc---cccCCCcccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc
Confidence 4578999998876 8999999999999999999999999999656788999999999999999999886532 3
Q ss_pred ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC-CCeeEEEecCChHHHHHHHHhcccCCcEE
Q psy10573 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH-GSTRVIQSCWTKEEYNSWLLDQLVPGGRM 154 (206)
Q Consensus 76 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~D~i~~~~~~~~~~~~~~~~L~~gG~l 154 (206)
++++++|+++.+++.+++++...+.......+++++.+|... .+ ++ +.||+|+++..++++++.+.++|+|||++
T Consensus 115 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~--~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l 190 (227)
T 1r18_A 115 TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK--GY--PPNAPYNAIHVGAAAPDTPTELINQLASGGRL 190 (227)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--CC--GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc--CC--CcCCCccEEEECCchHHHHHHHHHHhcCCCEE
Confidence 599999999999999999886521000002579999999433 23 33 67899999999999999999999999999
Q ss_pred EEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeec
Q psy10573 155 VMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 192 (206)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (206)
++++......+.+..+.+..++.|.. +.++.+.|.|+
T Consensus 191 vi~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~p~ 227 (227)
T 1r18_A 191 IVPVGPDGGSQYMQQYDKDANGKVEM-TRLMGVMYVPL 227 (227)
T ss_dssp EEEESCSSSCEEEEEEEECTTSCEEE-EEEEEECCCCC
T ss_pred EEEEecCCCceEEEEEEEcCCCcEEE-EEeccEEEeeC
Confidence 99998766678888898887888998 89999999885
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=163.45 Aligned_cols=193 Identities=39% Similarity=0.564 Sum_probs=156.1
Q ss_pred ccccccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEE
Q psy10573 2 LRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81 (206)
Q Consensus 2 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~i 81 (206)
.+++|+.|++.. .|.+.+...++++.++.|.....+++.+..++.++.+|||+|||+|..+..+++..++.++++++
T Consensus 32 ~~~~r~~f~~~~---~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~v 108 (226)
T 1i1n_A 32 LATDRSHYAKCN---PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGI 108 (226)
T ss_dssp HTSCGGGTCSSC---TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEE
T ss_pred HhCCHHHcCCCc---cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEE
Confidence 457777777654 78888888888899999999999999887667889999999999999999999887666799999
Q ss_pred eCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 82 EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 82 D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+++.+++.+++++...+.......+++++.+|... ... .++.||+|+++..++++++.+.++|+|||++++++.+.
T Consensus 109 D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~--~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 109 DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM-GYA--EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-CCG--GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCT
T ss_pred eCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc-Ccc--cCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999999999999887522100012479999999432 222 35678999999999988999999999999999999887
Q ss_pred CCCeeEEEEEecCCCceEEEEEEeeEEeeecccccccccc
Q psy10573 162 FKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKK 201 (206)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (206)
...+.+..+.+..++.|.. ..++.+.|.|+.+....|.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~-~~~~~~~f~p~~~~~~~~~~ 224 (226)
T 1i1n_A 186 GGNQMLEQYDKLQDGSIKM-KPLMGVIYVPLTDKEKQWSR 224 (226)
T ss_dssp TSCEEEEEEEECTTSCEEE-EEEEEECCCBCCCHHHHCCC
T ss_pred CCceEEEEEEEcCCCcEEE-EEcCceEEEeccCCcccccc
Confidence 6667777888877778988 88899999999876444443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=161.37 Aligned_cols=179 Identities=30% Similarity=0.395 Sum_probs=152.4
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|+++||+.|+++.. ...|.+...+.+.++.++.+.....+.+.+. +.++.+|||+|||+|.++..+++.. .+++
T Consensus 29 ~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~---~~v~ 103 (210)
T 3lbf_A 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVC 103 (210)
T ss_dssp HHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEE
T ss_pred HHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHhC---CEEE
Confidence 46789999999987 8899999999999999999999999999986 7889999999999999999998873 4999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++... +..+++++.+|..+ ... ++++||+|+++..++++.+.+.+.|+|||+++++++
T Consensus 104 ~vD~~~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~-~~~--~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 104 SVERIKGLQWQARRRLKNL-----DLHNVSTRHGDGWQ-GWQ--ARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG 175 (210)
T ss_dssp EEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGGG-CCG--GGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred EEecCHHHHHHHHHHHHHc-----CCCceEEEECCccc-CCc--cCCCccEEEEccchhhhhHHHHHhcccCcEEEEEEc
Confidence 9999999999999998873 33579999999433 222 457889999999998888899999999999999998
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
.. .+....+.+. .+.|.. ..+..+.|.|+.+..
T Consensus 176 ~~--~~~~~~~~~~-~~~~~~-~~~~~~~f~pl~~~~ 208 (210)
T 3lbf_A 176 EE--HQYLKRVRRR-GGEFII-DTVEAVRFVPLVKGE 208 (210)
T ss_dssp SS--SCEEEEEEEE-TTEEEE-EEEEECCCCBCCCSS
T ss_pred CC--ceEEEEEEEc-CCeEEE-EEeccEEEEEccCcc
Confidence 83 3666667664 567888 899999999998653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=163.76 Aligned_cols=186 Identities=32% Similarity=0.487 Sum_probs=152.2
Q ss_pred CccccccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC----CCc
Q psy10573 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG----PEG 76 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~ 76 (206)
|+++||+.|+|.. +|.+.+...+.++.++.|.....+++.+...+.++.+|||+|||+|.++..+++..+ +.+
T Consensus 34 ~~~~~r~~f~p~~---~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~ 110 (227)
T 2pbf_A 34 MLQVDRGKYIKEI---PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNS 110 (227)
T ss_dssp HHTSCGGGTCSSS---TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTC
T ss_pred HHhCCHHHcCCcc---cCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCC
Confidence 4678999999876 899999999999999999999999998865578899999999999999999998875 567
Q ss_pred eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc---cCCCCCCeeEEEecCChHHHHHHHHhcccCCcE
Q psy10573 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL---LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153 (206)
Q Consensus 77 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~ 153 (206)
+++++|+++.+++.+++++...+.......+++++.+|.....+ . ..++||+|+++..++++++.+.++|+|||+
T Consensus 111 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~ 188 (227)
T 2pbf_A 111 YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK--ELGLFDAIHVGASASELPEILVDLLAENGK 188 (227)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH--HHCCEEEEEECSBBSSCCHHHHHHEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc--cCCCcCEEEECCchHHHHHHHHHhcCCCcE
Confidence 99999999999999999987632110113579999999433210 2 356789999999999999999999999999
Q ss_pred EEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccc
Q psy10573 154 MVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++++++... .+.+..+.+ .++.|.. ..++.+.|.|+.+
T Consensus 189 lv~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~pl~~ 226 (227)
T 2pbf_A 189 LIIPIEEDY-TQVLYEITK-KNGKIIK-DRLFDVCFVSLKK 226 (227)
T ss_dssp EEEEEEETT-EEEEEEEEC-SCC-CEE-EEEEEECCCBCCC
T ss_pred EEEEEccCC-ceEEEEEEE-eCCeEEE-EEeccEEEEeccC
Confidence 999988633 477777777 6677888 8999999999864
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=161.51 Aligned_cols=184 Identities=26% Similarity=0.315 Sum_probs=155.9
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|+++||+.|+++.. ..+|.+.+.+++.++.++.+.+...+++.+. +.++.+|||+|||+|.++..+++..+ .+++
T Consensus 43 ~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~ 118 (235)
T 1jg1_A 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVY 118 (235)
T ss_dssp HHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEE
T ss_pred HHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEE
Confidence 45789999999988 8899999999999999999999999999886 78899999999999999999998873 5999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC-CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG-STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
++|+++.+++.+++++... +..+++++.+|. ..++ +++ .||+|+++..++.+.+.+.++|+|||++++++
T Consensus 119 ~vD~~~~~~~~a~~~~~~~-----~~~~v~~~~~d~--~~~~--~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 119 TIERIPELVEFAKRNLERA-----GVKNVHVILGDG--SKGF--PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp EEESCHHHHHHHHHHHHHT-----TCCSEEEEESCG--GGCC--GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHHc-----CCCCcEEEECCc--ccCC--CCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999999998763 334689999984 2223 333 48999999999888899999999999999999
Q ss_pred cCCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccccccc
Q psy10573 159 GEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQ 199 (206)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (206)
......+.+..+.+ .++.|.. +.++.+.|.|+.+...++
T Consensus 190 ~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~f~p~~~~~~~~ 228 (235)
T 1jg1_A 190 GSYHLWQELLEVRK-TKDGIKI-KNHGGVAFVPLIGEYGWK 228 (235)
T ss_dssp CSSSSCEEEEEEEE-ETTEEEE-EEEEEECCCBCBSTTSBC
T ss_pred ecCCCccEEEEEEE-eCCeEEE-EEeccEEEEEccCCCcch
Confidence 88765567777776 4667888 899999999998775443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-23 Score=155.69 Aligned_cols=182 Identities=30% Similarity=0.440 Sum_probs=152.6
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|+++||+.|+++.. ..+|.+...+.+.++.++.+.....+.+.+. +.++.+|||+|||+|.++..+++..++..+++
T Consensus 29 ~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 106 (215)
T 2yxe_A 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV 106 (215)
T ss_dssp HHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE
T ss_pred HHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 46789999999988 8889999999999999999999999998886 78899999999999999999998876656999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++... +..+++++.+|... .+ ..+++||+|+++..++++.+.+.++|+|||++++.+.
T Consensus 107 ~vD~~~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~--~~-~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 107 SIERIPELAEKAERTLRKL-----GYDNVIVIVGDGTL--GY-EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEESCHHHHHHHHHHHHHH-----TCTTEEEEESCGGG--CC-GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHc-----CCCCeEEEECCccc--CC-CCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence 9999999999999988762 23568999988422 22 0256789999999999888999999999999999988
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
..+ +.+..+.+. ...|.. ..++.+.|.|+.+..
T Consensus 179 ~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~p~~~~~ 211 (215)
T 2yxe_A 179 RYL--QRLVLAEKR-GDEIII-KDCGPVAFVPLVGKE 211 (215)
T ss_dssp SSS--EEEEEEEEE-TTEEEE-EEEEEECCCBCBSTT
T ss_pred CCC--cEEEEEEEe-CCEEEE-EEeccEEEEeccccc
Confidence 765 667777665 346888 888888999987653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=148.39 Aligned_cols=178 Identities=20% Similarity=0.214 Sum_probs=145.8
Q ss_pred Cccccccccccccc-cCccc--cccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCce
Q psy10573 1 MLRVDRKNFFTRVV-NEPYR--IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR 77 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~ 77 (206)
|.++||+.|+++.. ..+|. +...+.+.++.+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+
T Consensus 20 ~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~ 94 (231)
T 1vbf_A 20 FNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DK 94 (231)
T ss_dssp HHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SE
T ss_pred HHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc---CE
Confidence 46789999999988 88899 99999999999899999999999886 7888999999999999999998865 49
Q ss_pred EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 78 VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 78 v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
++++|+++.+++.+++++.. .+ +++++.+|.... .. .+++||+|+++..++++.+.+.++|+|||++++.
T Consensus 95 v~~vD~~~~~~~~a~~~~~~-----~~--~v~~~~~d~~~~-~~--~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 95 VVSVEINEKMYNYASKLLSY-----YN--NIKLILGDGTLG-YE--EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP 164 (231)
T ss_dssp EEEEESCHHHHHHHHHHHTT-----CS--SEEEEESCGGGC-CG--GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHhh-----cC--CeEEEECCcccc-cc--cCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999998865 11 789999994431 11 3567899999999998889999999999999999
Q ss_pred ecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 158 VGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
+.... ......+.+ ....|.. ..+....+.|+....
T Consensus 165 ~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 200 (231)
T 1vbf_A 165 IGVGR-VQKLYKVIK-KGNSPSL-ENLGEVMFGRIGGLY 200 (231)
T ss_dssp ECSSS-SEEEEEEEC-CTTSCEE-EEEEEECCCBCCSTT
T ss_pred EcCCC-ccEEEEEEE-cCCeeEE-EEeccEEEEEcCCcc
Confidence 87664 344555554 3455777 777777788876543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=155.23 Aligned_cols=183 Identities=23% Similarity=0.310 Sum_probs=147.6
Q ss_pred Cccccccccccccc--cCccccccc-cccCc---cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC
Q psy10573 1 MLRVDRKNFFTRVV--NEPYRIKSR-QIGYG---ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (206)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~ 74 (206)
|+++||+.|+++.. ..+|.+.+. +++.+ +..+.+.....+++.+. +.++.+|||+|||+|.++..+++..+.
T Consensus 22 ~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (317)
T 1dl5_A 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 99 (317)
T ss_dssp HHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred HHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCC
Confidence 46899999999886 678888888 88888 88888899999998886 788999999999999999999988743
Q ss_pred CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEE
Q psy10573 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRM 154 (206)
Q Consensus 75 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l 154 (206)
.++|+++|+++.+++.+++++... +..+++++.+|..+. .. ++++||+|+++.+++++.+.+.+.|+|||++
T Consensus 100 ~~~v~gvD~s~~~~~~a~~~~~~~-----g~~~v~~~~~d~~~~-~~--~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~l 171 (317)
T 1dl5_A 100 KGLVVSVEYSRKICEIAKRNVERL-----GIENVIFVCGDGYYG-VP--EFSPYDVIFVTVGVDEVPETWFTQLKEGGRV 171 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGGGC-CG--GGCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-----CCCCeEEEECChhhc-cc--cCCCeEEEEEcCCHHHHHHHHHHhcCCCcEE
Confidence 468999999999999999998763 335699999994332 22 3567899999999998889999999999999
Q ss_pred EEEecCCC-CCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 155 VMPVGEPF-KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
++.+.+.. ..+.+..+.+.. ..|.. +.++...+.|+...
T Consensus 172 vi~~~~~~~~~~~~~~~~~~~-~~~~~-~~i~~~~~~p~~~~ 211 (317)
T 1dl5_A 172 IVPINLKLSRRQPAFLFKKKD-PYLVG-NYKLETRFITAGGN 211 (317)
T ss_dssp EEEBCBGGGTBCEEEEEEEET-TEEEE-EEEEECCCCBCCGG
T ss_pred EEEECCCCcccceEEEEEEeC-CcEEE-EEeccEEEEEccCc
Confidence 99876553 124555555543 46888 88888888887644
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=127.27 Aligned_cols=115 Identities=15% Similarity=0.199 Sum_probs=90.6
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
...+...+..+++++.+|||+|||+|..+..+++... ++++|+|+|+|+.+++.|++++...+. ..+++++.+|.
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~----~~~v~~~~~D~ 132 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDI 132 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc----CceEEEeeccc
Confidence 3444445555678999999999999999999988764 567999999999999999999876322 25799999994
Q ss_pred ccccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. .. +.+.||+|+++..++. ++++++++|+|||++++....
T Consensus 133 ~-~~----~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 133 R-DI----AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp T-TC----CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred c-cc----cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 3 22 4456899999877643 678999999999999987543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=118.54 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=88.0
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.......+...+.++.+|||+|||+|.++..+++. .++|+++|+|+.+++.|++++...+ ..+++++..+..
T Consensus 9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~~~~ 80 (185)
T 3mti_A 9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLG-----IENTELILDGHE 80 (185)
T ss_dssp HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEEESCGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCcHH
Confidence 34444555556788999999999999999999875 3599999999999999999988632 357999986643
Q ss_pred cccccCCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
....+ .+++||+|+++... ...++++.++|+|||++++..+..
T Consensus 81 ~l~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 81 NLDHY--VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp GGGGT--CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred HHHhh--ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 32334 57789999987321 135588899999999999988754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=121.66 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=92.0
Q ss_pred HHHHHHHHhhc-cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+.+.++.-+.. .++||.+|||+|||+|+++..+++..++.++|+++|+++++++.+++++.. .+|+..+.+|
T Consensus 62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d 134 (233)
T 4df3_A 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGD 134 (233)
T ss_dssp HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESC
T ss_pred HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEe
Confidence 44555544432 268999999999999999999999999999999999999999999888754 3588889888
Q ss_pred cccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEe
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~ 158 (206)
......+....+++|+|+++...+ .++.++.+.|||||++++..
T Consensus 135 ~~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 135 ARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 433222223678899999876654 36788899999999999875
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=128.59 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=113.8
Q ss_pred ccccccccccc-----c-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCc
Q psy10573 3 RVDRKNFFTRV-----V-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG 76 (206)
Q Consensus 3 ~~~~~~~~~~~-----~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~ 76 (206)
..+++.|.+.. . ...|.+.......+..+..|.....+++.+. +.++.+|||+|||+|.++..+++..++.+
T Consensus 54 ~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~ 131 (336)
T 2b25_A 54 KFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQG 131 (336)
T ss_dssp CCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTC
T ss_pred CCCCceEEeCCCcEEEecCCCHHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCc
Confidence 34455555443 1 3445566666777888888988888888886 78999999999999999999998876767
Q ss_pred eEEEEeCCHHHHHHHHHhhhcc-------CccccCCCceEEEEccccccc-ccCCCCCCeeEEEecCChHH-HHHHHHhc
Q psy10573 77 RVYGVEHVMELAESSIKNIDKG-------NSELLDQGRVQFVAYFWLRHL-LLTNPHGSTRVIQSCWTKEE-YNSWLLDQ 147 (206)
Q Consensus 77 ~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~i~~~~~~~~-~~~~~~~~ 147 (206)
+++++|+++.+++.|++++... ..+ ....+++++.+|..+.. ++ ++++||+|+++...+. +++.+.++
T Consensus 132 ~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~-~~~~~v~~~~~d~~~~~~~~--~~~~fD~V~~~~~~~~~~l~~~~~~ 208 (336)
T 2b25_A 132 RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE-EWPDNVDFIHKDISGATEDI--KSLTFDAVALDMLNPHVTLPVFYPH 208 (336)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS-CCCCCEEEEESCTTCCC---------EEEEEECSSSTTTTHHHHGGG
T ss_pred eEEEEeCCHHHHHHHHHHHHHhhccccccccc-ccCCceEEEECChHHccccc--CCCCeeEEEECCCCHHHHHHHHHHh
Confidence 9999999999999999988741 100 01257999999944322 34 6678999999766543 57999999
Q ss_pred ccCCcEEEEEecCC
Q psy10573 148 LVPGGRMVMPVGEP 161 (206)
Q Consensus 148 L~~gG~l~~~~~~~ 161 (206)
|+|||++++..++.
T Consensus 209 LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 209 LKHGGVCAVYVVNI 222 (336)
T ss_dssp EEEEEEEEEEESSH
T ss_pred cCCCcEEEEEeCCH
Confidence 99999999887764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=116.65 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=89.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++...+. ..+++++.+|..+...+ .+++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~~ 93 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL----IDRVTLIKDGHQNMDKY--IDCP 93 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC----GGGEEEECSCGGGGGGT--CCSC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHhhh--ccCC
Confidence 68899999999999999999998876667999999999999999999887332 25799999995443334 5688
Q ss_pred eeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+++.++ ..+++++.++|+|||++++..+..
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 9999998754 357899999999999999987654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=115.55 Aligned_cols=123 Identities=21% Similarity=0.138 Sum_probs=96.5
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
.++...+...+++.+. +.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+. ..++
T Consensus 7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~- 78 (178)
T 3hm2_A 7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGV----SDRI- 78 (178)
T ss_dssp CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTC----TTSE-
T ss_pred cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCC----CCCE-
Confidence 3445566777777775 6788999999999999999998876 567999999999999999999876322 1267
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChHH--HHHHHHhcccCCcEEEEEecCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKEE--YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~--~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++.+|..+..+. .+++||+|+++..+++ +++++.+.|+|||++++......
T Consensus 79 ~~~~d~~~~~~~--~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 79 AVQQGAPRAFDD--VPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp EEECCTTGGGGG--CCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred EEecchHhhhhc--cCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccc
Confidence 777874333332 3378899999888776 88999999999999999877543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=118.93 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=94.9
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+. +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+++++... +..+++++.+|.
T Consensus 26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~d~- 97 (219)
T 3dh0_A 26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL-----GLKNVEVLKSEE- 97 (219)
T ss_dssp HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-----TCTTEEEEECBT-
T ss_pred HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEeccc-
Confidence 355666665 678899999999999999999988766779999999999999999998763 234799999994
Q ss_pred cccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++++||+|++...++ .+++++.++|+|||.+++..+..
T Consensus 98 ~~~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 98 NKIPL--PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKK 146 (219)
T ss_dssp TBCSS--CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccCCC--CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 33445 788999999988765 47789999999999999987653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=126.77 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=84.7
Q ss_pred HHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 41 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
.+.+......+.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++ .++++++.+| .+..+
T Consensus 30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~-~e~~~ 94 (257)
T 4hg2_A 30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR-----------HPRVTYAVAP-AEDTG 94 (257)
T ss_dssp HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC-----------CTTEEEEECC-TTCCC
T ss_pred HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh-----------cCCceeehhh-hhhhc
Confidence 33444334566899999999999999998754 399999999999987753 2579999999 45566
Q ss_pred cCCCCCCeeEEEecCChH-----HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 121 LTNPHGSTRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+ ++++||+|++...++ ..++++.++|||||+|++..++..
T Consensus 95 ~--~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 95 L--PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp C--CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred c--cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 7 899999999987765 377899999999999998877643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=114.50 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=96.7
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+...+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++... +..+++++
T Consensus 24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~ 95 (204)
T 3e05_A 24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKF-----VARNVTLV 95 (204)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHH-----TCTTEEEE
T ss_pred ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----CCCcEEEE
Confidence 55667777777776 7889999999999999999999875 6679999999999999999998763 23579999
Q ss_pred EcccccccccCCCCCCeeEEEecCC---hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|..+... ..++||+|+++.. ...+++++.+.|+|||++++....
T Consensus 96 ~~d~~~~~~---~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 96 EAFAPEGLD---DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp ECCTTTTCT---TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred eCChhhhhh---cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999433222 2356899999877 567889999999999999998665
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=116.98 Aligned_cols=105 Identities=22% Similarity=0.234 Sum_probs=87.2
Q ss_pred cCCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 47 KIKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.+.++.+|||+||| +|.++..+++.. ..+++++|+++.+++.+++++...+ . +++++.+|.....++ ++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~~~~~--~~ 121 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN-----S-NVRLVKSNGGIIKGV--VE 121 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT-----C-CCEEEECSSCSSTTT--CC
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC-----C-CcEEEeCCchhhhhc--cc
Confidence 36789999999999 999999998875 3499999999999999999988732 2 789999994333444 67
Q ss_pred CCeeEEEecCCh-------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 126 GSTRVIQSCWTK-------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 126 ~~~D~i~~~~~~-------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++||+|++++++ ..+++.+.++|+|||++++.++..
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 899999998764 557889999999999999987654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=118.20 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=96.3
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+++.....+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++... +.++++++
T Consensus 5 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~ 74 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEK-----GVENVRFQ 74 (239)
T ss_dssp -CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHH-----TCCSEEEE
T ss_pred ccCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHc-----CCCCeEEE
Confidence 55667777888887 8899999999999999999998765 39999999999999999988762 23579999
Q ss_pred EcccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+|. ...++ ++++||+|++...++ .+++++.++|+|||++++.....
T Consensus 75 ~~d~-~~~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 75 QGTA-ESLPF--PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp ECBT-TBCCS--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred eccc-ccCCC--CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 9994 44556 788999999987764 46799999999999999976543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=119.52 Aligned_cols=112 Identities=13% Similarity=0.241 Sum_probs=91.5
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+. ..++.+|||+|||+|.++..+++... +++++|+|+.+++.+++++... +.+++.++.+|.
T Consensus 25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~-----~~~~v~~~~~d~ 94 (260)
T 1vl5_A 25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGN-----GHQQVEYVQGDA 94 (260)
T ss_dssp CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEECCC
T ss_pred HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEEecH
Confidence 3556666665 67889999999999999999987652 9999999999999999988762 235799999993
Q ss_pred ccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
...++ ++++||+|++...++ .+++++.++|+|||++++....
T Consensus 95 -~~l~~--~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 95 -EQMPF--TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp --CCCS--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -HhCCC--CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 44556 789999999988774 4779999999999999987543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=112.85 Aligned_cols=120 Identities=23% Similarity=0.210 Sum_probs=95.8
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC-ce
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-RV 108 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~-~i 108 (206)
.++...+...+++.+. +.++.+|||+|||+|.++..+++. .++|+++|+++.+++.+++++... +.. ++
T Consensus 37 ~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~-----g~~~~v 106 (204)
T 3njr_A 37 QITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTY-----GLSPRM 106 (204)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHT-----TCTTTE
T ss_pred CCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCE
Confidence 4456677777777776 788899999999999999999876 359999999999999999998773 334 79
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCChHH-HHHHHHhcccCCcEEEEEecCCC
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE-YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++.+|..+..+ ..+.||+|+++..... +++++.+.|+|||++++......
T Consensus 107 ~~~~~d~~~~~~---~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 107 RAVQGTAPAALA---DLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp EEEESCTTGGGT---TSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHH
T ss_pred EEEeCchhhhcc---cCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcc
Confidence 999999543222 2346899999865433 88999999999999999887643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=118.91 Aligned_cols=129 Identities=28% Similarity=0.323 Sum_probs=103.2
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-Ccccc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELL 103 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~ 103 (206)
......+..+.....+++.+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++... + .
T Consensus 76 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g---~ 150 (280)
T 1i9g_A 76 MPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---Q 150 (280)
T ss_dssp SCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---S
T ss_pred ccccceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---C
Confidence 344455566777778888776 788999999999999999999987666779999999999999999998752 1 0
Q ss_pred CCCceEEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCC
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...+++++.+|..+ .++ ++++||+|+++.... .+++.+.++|+|||++++.+++.
T Consensus 151 ~~~~v~~~~~d~~~-~~~--~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 151 PPDNWRLVVSDLAD-SEL--PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp CCTTEEEECSCGGG-CCC--CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CCCcEEEEECchHh-cCC--CCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 13579999999433 344 677899999976644 68899999999999999988764
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=116.35 Aligned_cols=123 Identities=26% Similarity=0.285 Sum_probs=100.1
Q ss_pred cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
.++..+.....+...+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.|++++...+. ..++
T Consensus 74 ~~~~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~v 147 (255)
T 3mb5_A 74 PQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF----DDRV 147 (255)
T ss_dssp SCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC----TTTE
T ss_pred cccccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC----CCce
Confidence 33445666677777776 78899999999999999999998866778999999999999999999876332 1349
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCC
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++.+|..+ .+ ++++||+|+++.+.. .+++++.++|+|||++++..++.
T Consensus 148 ~~~~~d~~~--~~--~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 148 TIKLKDIYE--GI--EEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp EEECSCGGG--CC--CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EEEECchhh--cc--CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 999999542 24 778899999987755 47899999999999999987654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=118.10 Aligned_cols=117 Identities=21% Similarity=0.200 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+.....+++.+. .+.++.+|||+|||+|.++..+++. +.++++++|+++.+++.+++++...+. .++++++.+
T Consensus 31 ~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~ 103 (267)
T 3kkz_A 31 PEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGIVG 103 (267)
T ss_dssp HHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEEC
T ss_pred HHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCC----CcCcEEEEc
Confidence 445555555553 3578899999999999999999876 456999999999999999999876332 256999999
Q ss_pred ccccccccCCCCCCeeEEEecCChHH-----HHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE-----YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|. ...++ ++++||+|++...+++ +++++.++|+|||++++....
T Consensus 104 d~-~~~~~--~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 104 SM-DDLPF--RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp CT-TSCCC--CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred Ch-hhCCC--CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence 94 34445 7889999999887654 678999999999999998754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=114.84 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+.+.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+.......+++++.+|
T Consensus 16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 16 QRMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence 34555666665 4678899999999999999998765 55699999999999999999987532210011279999999
Q ss_pred cccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. ...+. +.++||+|++...++ .+++++.++|+|||+++++..
T Consensus 93 ~-~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 93 L-TYQDK--RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp T-TSCCG--GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred c-ccccc--cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 4 33333 557889999987764 367889999999997766544
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=116.43 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+++.+. +.++.+|||+|||+|..+..+++..+ ++++++|+++.+++.+++++...+. ..+++++
T Consensus 20 ~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~----~~~v~~~ 91 (256)
T 1nkv_A 20 FTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV----SERVHFI 91 (256)
T ss_dssp CCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEE
Confidence 45567777777775 78899999999999999999988763 4899999999999999998876322 2479999
Q ss_pred EcccccccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|+.+ .++ +++||+|++...+++ +++++.++|+|||++++..+.
T Consensus 92 ~~d~~~-~~~---~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 92 HNDAAG-YVA---NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp ESCCTT-CCC---SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred ECChHh-CCc---CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 999432 222 678999999776644 589999999999999997653
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=117.89 Aligned_cols=103 Identities=19% Similarity=0.035 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..++... ++++|+++|+++++++.|++++...+ ..+++++.+|..+ + ++++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~g-----l~~v~~v~gDa~~---l--~d~~ 188 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLG-----VDGVNVITGDETV---I--DGLE 188 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHT-----CCSEEEEESCGGG---G--GGCC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcC-----CCCeEEEECchhh---C--CCCC
Confidence 7899999999999998775554444 56799999999999999999987632 3589999999432 3 5678
Q ss_pred eeEEEecCCh---HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|++.... ..+++++.++|+|||++++.....
T Consensus 189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 8999987554 368899999999999999887543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=112.74 Aligned_cols=114 Identities=23% Similarity=0.272 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+...+.+.+. ..++ +|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+. ..+++++.+|
T Consensus 31 ~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d 101 (219)
T 3dlc_A 31 IIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANL----NDRIQIVQGD 101 (219)
T ss_dssp HHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECB
T ss_pred HHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccc----cCceEEEEcC
Confidence 34555555554 4445 9999999999999999886 456999999999999999999876332 2479999999
Q ss_pred cccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. ...++ ++++||+|++...++ .+++++.++|+|||.+++....
T Consensus 102 ~-~~~~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 102 V-HNIPI--EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp T-TBCSS--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred H-HHCCC--CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 4 33445 788999999988764 4779999999999999987543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=114.42 Aligned_cols=124 Identities=23% Similarity=0.180 Sum_probs=100.3
Q ss_pred cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
.....+.....+++.+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++.... +..++
T Consensus 77 ~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----g~~~v 150 (258)
T 2pwy_A 77 ATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW----QVENV 150 (258)
T ss_dssp SCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CCCCE
T ss_pred cccccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc----CCCCE
Confidence 33455666667777775 7889999999999999999999886667799999999999999999987620 23579
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCC
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++.+|..+ .++ ++++||+|+++.... .+++++.++|+|||++++..+..
T Consensus 151 ~~~~~d~~~-~~~--~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 151 RFHLGKLEE-AEL--EEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EEEESCGGG-CCC--CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred EEEECchhh-cCC--CCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 999999433 334 678899999976644 68899999999999999988765
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=114.34 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=80.1
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc-------cccCCCceEEEE
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQFVA 112 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~i~~~~ 112 (206)
+++.+. +.++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|+++...... ......+++++.
T Consensus 14 ~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 14 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHhcc--cCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 344444 5788999999999999999998863 3999999999999999987642100 000125789999
Q ss_pred cccccccccCCCC-CCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 113 YFWLRHLLLTNPH-GSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 113 ~d~~~~~~~~~~~-~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|.. ..++ ++ ++||+|++...++ .+++++.++|+|||++++.+
T Consensus 89 ~d~~-~l~~--~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 89 GDFF-ALTA--RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp ECCS-SSTH--HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred Cccc-cCCc--ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9932 2333 33 6789999866653 25688999999999844443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-15 Score=110.13 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 32 SSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
....+.+.+.+.+... ..++.+|||+|||+|.++..++.. ...+++++|+++.+++.+++++...+ ..++++
T Consensus 25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~ 97 (189)
T 3p9n_A 25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALG-----LSGATL 97 (189)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHT-----CSCEEE
T ss_pred CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcC-----CCceEE
Confidence 4455666666666532 157889999999999999987764 33489999999999999999988733 357999
Q ss_pred EEcccccccc-cCCCCCCeeEEEecCChH-------HHHHHHHh--cccCCcEEEEEecCCC
Q psy10573 111 VAYFWLRHLL-LTNPHGSTRVIQSCWTKE-------EYNSWLLD--QLVPGGRMVMPVGEPF 162 (206)
Q Consensus 111 ~~~d~~~~~~-~~~~~~~~D~i~~~~~~~-------~~~~~~~~--~L~~gG~l~~~~~~~~ 162 (206)
+.+|..+... + ++++||+|+++++++ .+++.+.+ +|+|||++++......
T Consensus 98 ~~~d~~~~~~~~--~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 98 RRGAVAAVVAAG--TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp EESCHHHHHHHC--CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred EEccHHHHHhhc--cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 9999443322 3 567889999987754 35677777 9999999999887654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=114.26 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+.....+.+.+. ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++...........+++++.+
T Consensus 15 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 15 QQRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence 344555666665 4678899999999999999998765 5569999999999999999998653221011127999999
Q ss_pred ccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|. ...++ ++++||+|++...++ .+++++.++|+|||+++.+..
T Consensus 92 d~-~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 92 SL-VYRDK--RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp CS-SSCCG--GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cc-ccccc--ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 94 33334 567889999987654 366889999999996655443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-15 Score=112.54 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=86.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++... +..+++++.+|... .+-.+++++|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~v~~~~~d~~~-~~~~~~~~~~ 112 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEV-----GVPNIKLLWVDGSD-LTDYFEDGEI 112 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHH-----CCSSEEEEECCSSC-GGGTSCTTCC
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHc-----CCCCEEEEeCCHHH-HHhhcCCCCC
Confidence 567899999999999999999876 6679999999999999999998763 23589999999443 2201267889
Q ss_pred eEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++.+. ..+++.+.++|+|||.+++.+..
T Consensus 113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999998775 35889999999999999998754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=115.50 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=87.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc--cCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL--LTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~ 126 (206)
.++..|||||||+|.++..+++.. +..+++|+|+++.+++.+++++... +..++.++.+|..+..+ + +++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~-----~l~nv~~~~~Da~~~l~~~~--~~~ 104 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEE-----GLSNLRVMCHDAVEVLHKMI--PDN 104 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHT-----TCSSEEEECSCHHHHHHHHS--CTT
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHh-----CCCcEEEEECCHHHHHHHHc--CCC
Confidence 467899999999999999999876 6779999999999999999998763 34579999999544322 5 789
Q ss_pred CeeEEEecCChH--------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||.|+++.+.+ .+++.+.++|+|||++++.+...+
T Consensus 105 ~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~ 154 (218)
T 3dxy_A 105 SLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP 154 (218)
T ss_dssp CEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred ChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 999999873321 378999999999999999886543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=117.59 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. .++++++|+|+.+++.+++++.. ..+++++.+|. ...++ ++++
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~-~~~~~--~~~~ 120 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDI-LTKEF--PENN 120 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS-------CTTEEEEECCT-TTCCC--CTTC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEECcc-ccCCC--CCCc
Confidence 5678899999999999999999875 34999999999999999988754 15899999994 33455 7889
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|++...+++ +++++.++|+|||.+++..+..
T Consensus 121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 999999877655 4689999999999999987643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=116.66 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc----------cCcc
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK----------GNSE 101 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~----------~~~~ 101 (206)
..+.+...+...+. ..++.+|||+|||+|..+..|++.. .+|+|+|+|+.+++.|+++... .+..
T Consensus 52 ~~~~l~~~~~~~~~--~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~ 126 (252)
T 2gb4_A 52 GHQLLKKHLDTFLK--GQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAK 126 (252)
T ss_dssp CCHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred CCHHHHHHHHHhcc--CCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhccccccccccccccccc
Confidence 44555554444332 4578899999999999999998753 4999999999999999876531 0000
Q ss_pred c--cCCCceEEEEcccccccccCCCC-CCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEe
Q psy10573 102 L--LDQGRVQFVAYFWLRHLLLTNPH-GSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 102 ~--~~~~~i~~~~~d~~~~~~~~~~~-~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
. ....+++++++|..+ .++ .+ ++||+|++...+ ..+++++.++|+|||++++.+
T Consensus 127 ~~~~~~~~i~~~~~D~~~-l~~--~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 127 VFKSSSGSISLYCCSIFD-LPR--ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp EEEETTSSEEEEESCTTT-GGG--GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCceEEEECcccc-CCc--ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 0 012579999999433 333 33 789999976554 236789999999999997543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=115.37 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=92.8
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+...+. ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+. ..+++++
T Consensus 55 ~~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~ 127 (232)
T 3ntv_A 55 VDRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHF----ENQVRII 127 (232)
T ss_dssp CCHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred cCHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEE
Confidence 45666666666655 5678899999999999999999844 567999999999999999999987332 2479999
Q ss_pred Ecccccccc-cCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEE
Q psy10573 112 AYFWLRHLL-LTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 112 ~~d~~~~~~-~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+|..+..+ . .+++||+|+++... ..+++.+.++|+|||++++.
T Consensus 128 ~~d~~~~~~~~--~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 128 EGNALEQFENV--NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ESCGGGCHHHH--TTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCHHHHHHhh--ccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 999544433 3 36789999998764 44678999999999999883
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=115.58 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.+.....+++.+. .+.++.+|||+|||+|..+..+++.. +. +++++|+++.+++.+++++...+. ..+++++.
T Consensus 30 ~~~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~ 102 (257)
T 3f4k_A 30 SPEATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYV-KG-QITGIDLFPDFIEIFNENAVKANC----ADRVKGIT 102 (257)
T ss_dssp CHHHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHC-CS-EEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred CHHHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHHcCC----CCceEEEE
Confidence 3455555655553 35778899999999999999999876 33 999999999999999999877332 24599999
Q ss_pred cccccccccCCCCCCeeEEEecCChH-----HHHHHHHhcccCCcEEEEEecC
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+|. ...++ ++++||+|++...++ .+++++.++|+|||++++..+.
T Consensus 103 ~d~-~~~~~--~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 103 GSM-DNLPF--QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CCT-TSCSS--CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CCh-hhCCC--CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 994 44455 788999999876654 4789999999999999998754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=114.91 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=88.7
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 119 (206)
+.+.+...+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... .+++++.+|. ...
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~-~~~ 110 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGEG--------PDLSFIKGDL-SSL 110 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTCB--------TTEEEEECBT-TBC
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccc--------CCceEEEcch-hcC
Confidence 44444444678899999999999999999875 34999999999999999987532 5799999994 334
Q ss_pred ccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 120 LLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++ ++++||+|++...++ .+++++.++|+|||++++..++..
T Consensus 111 ~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 111 PF--ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp SS--CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CC--CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 55 788999999987765 477999999999999999986543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=110.96 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=89.9
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+...+.++.+|||+|||+|.++..+++.. +. +++++|+++.+++.+++++.. .++++++.+|..+
T Consensus 31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~-~~-~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~- 100 (215)
T 2pxx_A 31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGG-FP-NVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRK- 100 (215)
T ss_dssp HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT-CC-CEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTS-
T ss_pred HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC-CC-cEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhc-
Confidence 3555565567888999999999999999998763 33 899999999999999988753 2478999999433
Q ss_pred cccCCCCCCeeEEEecCCh---------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK---------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~---------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++ ++++||+|+++.++ ..+++++.++|+|||.+++..++.+
T Consensus 101 ~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 101 LDF--PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp CCS--CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred CCC--CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 345 77899999987665 3466888999999999999988764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-15 Score=115.34 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+. ..+++++.+|..+...+ ++++
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~~ 136 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGV----SDNMQFIHCAAQDVASH--LETP 136 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CC----GGGEEEEESCGGGTGGG--CSSC
T ss_pred CCCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEEcCHHHhhhh--cCCC
Confidence 345789999999999999999876 34999999999999999999876332 15799999995444335 7889
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++..++
T Consensus 137 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 137 VDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 99999988775 4779999999999999998764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=112.99 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=83.8
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+.. ..+++++.+|..+..+. +++++||+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~~i~~~~gda~~~l~~-~~~~~fD~ 132 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS---PSRVRFLLSRPLDVMSR-LANDSYQL 132 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSCHHHHGGG-SCTTCEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---cCcEEEEEcCHHHHHHH-hcCCCcCe
Confidence 349999999999999999988766789999999999999999999873321 14799999994443331 24788999
Q ss_pred EEecCChH---HHHHHHHhcccCCcEEEEEe
Q psy10573 131 IQSCWTKE---EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 131 i~~~~~~~---~~~~~~~~~L~~gG~l~~~~ 158 (206)
|+++.... .+++.+.++|+|||++++.-
T Consensus 133 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 133 VFGQVSPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp EEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 99987653 46789999999999999853
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=112.48 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=85.5
Q ss_pred HHHHHHHHHhh-ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 35 HIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 35 ~~~~~~~~~l~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
.+.+.++..+. -.+.++.+|||+|||+|.++..+++..++.++|+++|+++.+++...+.... ..++.++.+
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-------r~nv~~i~~ 132 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-------RPNIFPLLA 132 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-------CTTEEEEEC
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCeEEEEc
Confidence 34455555553 2367899999999999999999999888888999999999887555444332 147999999
Q ss_pred ccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|......+....++||+|+++...+. +...+.+.|||||++++++..
T Consensus 133 Da~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 133 DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred ccccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 94332222112468999999877532 334556699999999998643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-15 Score=115.65 Aligned_cols=104 Identities=28% Similarity=0.379 Sum_probs=87.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++... +.++++++.+|. ...++ ++++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~d~-~~~~~--~~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKN-----GIKNVKFLQANI-FSLPF--EDSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEECCG-GGCCS--CTTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEccc-ccCCC--CCCC
Confidence 4788999999999999999999875 6679999999999999999998763 335799999994 34455 7889
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||.+++..+.
T Consensus 106 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 106 FDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999987664 4778999999999999997654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=111.34 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+.+.+...+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+ ..+++++.+|
T Consensus 45 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d 117 (205)
T 3grz_A 45 QTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNG-----IYDIALQKTS 117 (205)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEESS
T ss_pred ccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEecc
Confidence 3455566666655678899999999999999998764 34599999999999999999988633 3358999998
Q ss_pred cccccccCCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..+ + .+++||+|+++...+. +++++.++|+|||++++.....
T Consensus 118 ~~~---~--~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 118 LLA---D--VDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp TTT---T--CCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred ccc---c--CCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecCc
Confidence 432 2 4678999999988875 4577788999999999875543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-15 Score=114.35 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. .++++++|+|+.+++.+++++...+. ..+++++.+|. ...++ ++++
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~-~~~~~--~~~~ 129 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGL----ANRVTFSYADA-MDLPF--EDAS 129 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCT-TSCCS--CTTC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEECcc-ccCCC--CCCC
Confidence 5688999999999999999998765 35999999999999999998876332 24799999994 33455 7889
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++..+.
T Consensus 130 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 130 FDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp EEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 99999987654 4678999999999999988754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=115.59 Aligned_cols=115 Identities=14% Similarity=0.020 Sum_probs=91.3
Q ss_pred HHHHHHHhh--ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 37 HAQMLELLK--DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 37 ~~~~~~~l~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
...+++.+. ..+.++.+|||+|||+|.++..+++..+ ++++++|+++.+++.+++++...+. ..+++++.+|
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d 140 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECC
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEEcC
Confidence 444555551 0257889999999999999999988753 4999999999999999998865322 2579999999
Q ss_pred cccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. ...++ ++++||+|++...++ .+++++.++|+|||++++..+.
T Consensus 141 ~-~~~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 141 F-LEIPC--EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp T-TSCSS--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-ccCCC--CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 4 34556 788999999988764 4679999999999999998764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=111.18 Aligned_cols=105 Identities=10% Similarity=0.209 Sum_probs=85.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~ 127 (206)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++... +..++.++.+|...... + ++++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~-----~~~nv~~~~~d~~~l~~~~--~~~~ 108 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDS-----EAQNVKLLNIDADTLTDVF--EPGE 108 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHS-----CCSSEEEECCCGGGHHHHC--CTTS
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHc-----CCCCEEEEeCCHHHHHhhc--CcCC
Confidence 467899999999999999999876 6779999999999999999998763 33579999999543211 4 7888
Q ss_pred eeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||.|+++.+. ..+++.+.++|+|||.+++.+...
T Consensus 109 ~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~ 156 (213)
T 2fca_A 109 VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 156 (213)
T ss_dssp CCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred cCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9999876432 357899999999999999987553
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=116.27 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=97.7
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
....+.+.+.++..+. ..++..|||+|||+|.++..++...++..+++|+|+++.+++.|++++...+ ..+++
T Consensus 185 a~l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-----~~~i~ 257 (354)
T 3tma_A 185 GSLTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-----LSWIR 257 (354)
T ss_dssp CSCCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-----CTTCE
T ss_pred CCcCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-----CCceE
Confidence 3345666677777665 6788999999999999999999877556799999999999999999998733 23799
Q ss_pred EEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++.+|..+ .+. +.+.||+|++++++ ..+++.+.+.|+|||.+++.+++.
T Consensus 258 ~~~~D~~~-~~~--~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 258 FLRADARH-LPR--FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp EEECCGGG-GGG--TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred EEeCChhh-Ccc--ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 99999433 333 45568999998774 346688899999999999998875
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=109.99 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=90.4
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+.+.+...+.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++...+ .+++++.+|.
T Consensus 24 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~ 94 (227)
T 1ve3_A 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDA 94 (227)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC------CCceEEECch
Confidence 3445556666566778999999999999999988764 3 99999999999999999886522 5789999994
Q ss_pred ccccccCCCCCCeeEEEecCC--h------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWT--K------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~--~------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. ..++ ++++||+|+++.+ . ..+++++.++|+|||.+++..+.
T Consensus 95 ~-~~~~--~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 95 R-KLSF--EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp T-SCCS--CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred h-cCCC--CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3 2344 6788999999877 3 23678999999999999998775
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=113.10 Aligned_cols=123 Identities=21% Similarity=0.178 Sum_probs=96.4
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
.+..+.....+...+. ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+. ..+++
T Consensus 36 ~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~ 108 (233)
T 2gpy_A 36 PIMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGL----ESRIE 108 (233)
T ss_dssp CCCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTC----TTTEE
T ss_pred CCcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEE
Confidence 3466777777777665 5678899999999999999999876 567999999999999999999876332 14699
Q ss_pred EEEcccccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEec
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++.+|..+..+....+++||+|+++.+. ..+++.+.++|+|||++++...
T Consensus 109 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 109 LLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EECSCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred EEECCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 9999954432320015678999998876 5677999999999999998743
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=115.41 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=85.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..+ ++++++|+|+.+++.+++++...+. ..+++++.+|..+ + +++
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-----~-~~~ 137 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWEE-----F-DEP 137 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCC----SSCEEEEECCGGG-----C-CCC
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCHHH-----c-CCC
Confidence 57889999999999999999998764 5999999999999999999876332 2479999999532 1 577
Q ss_pred eeEEEecCChHH---------------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE---------------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~---------------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...+++ +++++.++|+|||++++......
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 899999877644 47899999999999999877543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-15 Score=107.80 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
..+...+.+.+.. ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+. ..+++++.+
T Consensus 16 ~~~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 88 (177)
T 2esr_A 16 DKVRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKM 88 (177)
T ss_dssp --CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECS
T ss_pred HHHHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEEEC
Confidence 3345566666542 457789999999999999998875 335999999999999999999876332 147999999
Q ss_pred ccccccccCCCCCCeeEEEecCChH-----HHHHHHH--hcccCCcEEEEEecCCCC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLL--DQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~--~~L~~gG~l~~~~~~~~~ 163 (206)
|+.+..+. .+++||+|++++++. ..++.+. ++|+|||++++.+.....
T Consensus 89 d~~~~~~~--~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 89 EAERAIDC--LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp CHHHHHHH--BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred cHHHhHHh--hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 95443333 345689999997753 3455665 889999999999887653
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=113.09 Aligned_cols=109 Identities=22% Similarity=0.219 Sum_probs=86.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..+++++.+|..+..+..-..++
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV----DQRVTLREGPALQSLESLGECPA 136 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHTCCSCCC
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHhcCCCCC
Confidence 45789999999999999999998874478999999999999999999987332 24799999995443332112358
Q ss_pred eeEEEecCChH---HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+++.... .+++.+.++|+|||++++....
T Consensus 137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 89999987764 4678899999999999886443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=109.70 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=88.1
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. ...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. ..+++++.+|. .
T Consensus 33 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~-~ 102 (234)
T 3dtn_A 33 GVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADY-S 102 (234)
T ss_dssp HHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCT-T
T ss_pred HHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCch-h
Confidence 33444433 24577999999999999999999876 667999999999999999998765 23799999993 3
Q ss_pred ccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..++ + ++||+|++...+++ +++++.++|+|||.+++.....
T Consensus 103 ~~~~--~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 103 KYDF--E-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp TCCC--C-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccCC--C-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 3344 4 78999999887643 6789999999999999987554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=112.93 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. .. +++++|+++.+++.+++++.. .+++++.+|. ...++ ++++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~-~~~~~--~~~~f 109 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHG-AK-KVLGIDLSERMLTEAKRKTTS--------PVVCYEQKAI-EDIAI--EPDAY 109 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CS-EEEEEESCHHHHHHHHHHCCC--------TTEEEEECCG-GGCCC--CTTCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcC-CC-EEEEEECCHHHHHHHHHhhcc--------CCeEEEEcch-hhCCC--CCCCe
Confidence 378999999999999999998764 33 899999999999999988652 5799999994 34455 78899
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++...++ .+++++.++|+|||.+++.+++
T Consensus 110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999988764 4778999999999999998654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=114.02 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=86.4
Q ss_pred ccCc-HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 30 DISS-PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 30 ~~~~-~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.+.. |.....+.+.+. ..++.+|||+|||+|..+..+++. .++.++|+++|+++.+++.++. . .
T Consensus 62 ~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~---------~ 129 (236)
T 2bm8_A 62 RMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D---------M 129 (236)
T ss_dssp ECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G---------C
T ss_pred cccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c---------C
Confidence 3445 777777766665 345689999999999999999887 3467799999999999887762 1 1
Q ss_pred CceEEEEcccccc--cccCCCCCCeeEEEecCC---hHHHHHHHHh-cccCCcEEEEEe
Q psy10573 106 GRVQFVAYFWLRH--LLLTNPHGSTRVIQSCWT---KEEYNSWLLD-QLVPGGRMVMPV 158 (206)
Q Consensus 106 ~~i~~~~~d~~~~--~~~~~~~~~~D~i~~~~~---~~~~~~~~~~-~L~~gG~l~~~~ 158 (206)
.+++++.+|..+. .+. +.+.+||+|+++.. ...++.++.+ +|+|||++++..
T Consensus 130 ~~v~~~~gD~~~~~~l~~-~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 130 ENITLHQGDCSDLTTFEH-LREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp TTEEEEECCSSCSGGGGG-GSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred CceEEEECcchhHHHHHh-hccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 5799999994432 222 13346899998765 4456788886 999999999853
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=112.94 Aligned_cols=129 Identities=22% Similarity=0.251 Sum_probs=96.5
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+..+....|.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+.
T Consensus 37 ~~~~~~~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---- 110 (239)
T 2hnk_A 37 LAQANMQISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL---- 110 (239)
T ss_dssp C---CCSCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----
T ss_pred cCCcccccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence 344444567777777766665 56788999999999999999998874467999999999999999999876332
Q ss_pred CCceEEEEcccccccc-c-----------CCCC--CCeeEEEecCChH---HHHHHHHhcccCCcEEEEEec
Q psy10573 105 QGRVQFVAYFWLRHLL-L-----------TNPH--GSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~-~-----------~~~~--~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+++++.+|..+..+ + .+++ ++||+|+++...+ .+++.+.++|+|||++++...
T Consensus 111 ~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 111 ENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp GGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 1359999998432211 0 0133 7899999987765 466899999999999998753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=106.38 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc--eEEEE
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR--VQFVA 112 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~--i~~~~ 112 (206)
.....+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+ ..+ ++++.
T Consensus 39 ~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 108 (194)
T 1dus_A 39 KGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN-----LDNYDIRVVH 108 (194)
T ss_dssp HHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-----CTTSCEEEEE
T ss_pred hHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCccceEEEE
Confidence 46677777775 568899999999999999999876 3499999999999999999987632 234 99999
Q ss_pred cccccccccCCCCCCeeEEEecCChH-------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKE-------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~-------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|..+ .. ++++||+|+++.+++ .+++.+.++|+|||.+++..+...
T Consensus 109 ~d~~~--~~--~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 109 SDLYE--NV--KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp CSTTT--TC--TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred Cchhc--cc--ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99433 23 567899999987643 467889999999999999988754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-15 Score=112.45 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=88.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+.+.+.. ..++.+|||+|||+|.++..+++.. + +++|+|+|+.+++.+++++.. +++++.+|.
T Consensus 29 ~~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~ 95 (250)
T 2p7i_A 29 MHPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHF-N--DITCVEASEEAISHAQGRLKD---------GITYIHSRF 95 (250)
T ss_dssp HHHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTC-S--CEEEEESCHHHHHHHHHHSCS---------CEEEEESCG
T ss_pred HHHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhC-C--cEEEEeCCHHHHHHHHHhhhC---------CeEEEEccH
Confidence 45556666653 3467899999999999999998754 3 899999999999999987642 689999984
Q ss_pred ccccccCCCCCCeeEEEecCChHH------HHHHHH-hcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEE------YNSWLL-DQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~-~~L~~gG~l~~~~~~~~ 162 (206)
.+. + ++++||+|++...+++ +++++. ++|+|||.+++.+++..
T Consensus 96 ~~~--~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 96 EDA--Q--LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp GGC--C--CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred HHc--C--cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 332 3 6788999999887654 778999 99999999999987654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=118.41 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+...+. ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...+. ..+++++
T Consensus 44 i~~~~~~~l~~l~~--~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~ 117 (242)
T 3r3h_A 44 VAPEQAQFMQMLIR--LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ----EHKIKLR 117 (242)
T ss_dssp CCHHHHHHHHHHHH--HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC----TTTEEEE
T ss_pred cCHHHHHHHHHHHh--hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEE
Confidence 44555544444443 45678999999999999999998775578999999999999999999887332 2589999
Q ss_pred EcccccccccCC---CCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEe
Q psy10573 112 AYFWLRHLLLTN---PHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 112 ~~d~~~~~~~~~---~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|..+..+... .+++||+|+++.... .+++.+.++|+|||++++.-
T Consensus 118 ~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 118 LGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp ESCHHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCHHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 999433222100 146789999987754 36788999999999999853
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=109.92 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc---cccCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH---LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~ 124 (206)
+.++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+.... ..++.++.+|.... .++ .
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~--~ 124 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGI--V 124 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTT--C
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhhccc--c
Confidence 57889999999999999999998874 66999999999987766655543 14688888884332 223 3
Q ss_pred CCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEe
Q psy10573 125 HGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 125 ~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~ 158 (206)
++||+|+++...+ .+++++.++|||||++++..
T Consensus 125 -~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 125 -EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp -CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 7899999985432 24688999999999999985
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=112.31 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=89.6
Q ss_pred HHHHHHHHHHh---hccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 34 PHIHAQMLELL---KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 34 ~~~~~~~~~~l---~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
+.....+.+.+ ...+.++.+|||+|||+|.++..+++. ..+++++|+|+.+++.+++++ . ...+++++
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-----~~~~~~~~ 90 (263)
T 2yqz_A 20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-----GVDRKVQV 90 (263)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-----TSCTTEEE
T ss_pred hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-----ccCCceEE
Confidence 34556666666 334678899999999999999999875 349999999999999999987 2 12367999
Q ss_pred EEcccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEE
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~ 157 (206)
+.+|. ...++ ++++||+|++...++ .+++++.++|+|||.+++.
T Consensus 91 ~~~d~-~~~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 91 VQADA-RAIPL--PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EESCT-TSCCS--CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEccc-ccCCC--CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 99994 34455 788999999987764 4678999999999999987
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=118.17 Aligned_cols=109 Identities=23% Similarity=0.214 Sum_probs=82.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc---------------------------
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE--------------------------- 101 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--------------------------- 101 (206)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++......
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 468899999999999999999887 4459999999999999999987642210
Q ss_pred -------------------------cc-CCCceEEEEcccccc----cccCCCCCCeeEEEecCChHH------------
Q psy10573 102 -------------------------LL-DQGRVQFVAYFWLRH----LLLTNPHGSTRVIQSCWTKEE------------ 139 (206)
Q Consensus 102 -------------------------~~-~~~~i~~~~~d~~~~----~~~~~~~~~~D~i~~~~~~~~------------ 139 (206)
.. -..+++++.+|+... .++ .+++||+|++...+++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~--~~~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEA--QTPEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTT--CCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccc--cCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 00 014799999994322 123 6788999999887632
Q ss_pred HHHHHHhcccCCcEEEEEecC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++++.++|+|||++++....
T Consensus 202 ~l~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 202 MFRRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHHHHHhCCCcEEEEecCC
Confidence 568999999999999997554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-15 Score=109.82 Aligned_cols=121 Identities=17% Similarity=0.066 Sum_probs=89.7
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
....+...+.+.+... .++.+|||+|||+|.++..++... . .+|+++|+++.+++.+++++...+ ..+++++
T Consensus 37 ~~~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~-~-~~V~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~ 108 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRY-A-AGATLIEMDRAVSQQLIKNLATLK-----AGNARVV 108 (202)
T ss_dssp -CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT-C-SEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEE
T ss_pred CHHHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcC-C-CEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEE
Confidence 3344555566655421 267899999999999999876643 2 389999999999999999988733 3579999
Q ss_pred EcccccccccCCCCCCeeEEEecCCh-----HHHHHHHHh--cccCCcEEEEEecCCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLD--QLVPGGRMVMPVGEPF 162 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~--~L~~gG~l~~~~~~~~ 162 (206)
.+|..+..+. ..++||+|++++++ ..+++.+.+ +|+|||++++.+....
T Consensus 109 ~~D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 109 NSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp CSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred ECCHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 9995443444 56789999998873 245666655 5999999998877644
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=114.37 Aligned_cols=106 Identities=19% Similarity=0.091 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..+ ++++++|+++.+++.+++++...+. ..+++++.+|. ...++ ++++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~-~~~~~--~~~~ 185 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRI----DDHVRSRVCNM-LDTPF--DKGA 185 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCT-TSCCC--CTTC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECCh-hcCCC--CCCC
Confidence 45788999999999999999988753 4999999999999999999887332 24799999994 33455 7889
Q ss_pred eeEEEecCChH-----HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...++ .+++++.++|+|||++++..+...
T Consensus 186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 99999977654 478999999999999999876443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-15 Score=111.20 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=90.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..+++++
T Consensus 42 ~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~ 115 (221)
T 3u81_A 42 VGDAKGQIMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKVTIL 115 (221)
T ss_dssp CCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEE
T ss_pred cCHHHHHHHHHHHH--hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCceEEE
Confidence 34444444444443 45678999999999999999998765577999999999999999999887332 2469999
Q ss_pred EcccccccccCCC----CCCeeEEEecCChHHHH------HHHHhcccCCcEEEEEecCCC
Q psy10573 112 AYFWLRHLLLTNP----HGSTRVIQSCWTKEEYN------SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 112 ~~d~~~~~~~~~~----~~~~D~i~~~~~~~~~~------~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+|..+..+. +. .++||+|+++...+.+. +.+ ++|+|||++++......
T Consensus 116 ~~d~~~~l~~-~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 116 NGASQDLIPQ-LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP 174 (221)
T ss_dssp ESCHHHHGGG-TTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred ECCHHHHHHH-HHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence 9994333221 12 26899999988765433 334 89999999998755543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=114.92 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCC-CC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNP-HG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~ 126 (206)
+.++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++. ++++++.+|..+..++ + ++
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~--~~~~ 110 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPA--GLGA 110 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHC----------TTSEEEECCSCSSCCT--TCCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhC----------CCceEEEcchhhccCC--cCCC
Confidence 578899999999999999999876 349999999999999999872 4789999995455555 6 78
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEE
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~ 155 (206)
+||+|+++.....+++++.++|+|||+++
T Consensus 111 ~fD~v~~~~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 111 PFGLIVSRRGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CEEEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence 99999999888888999999999999998
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=115.14 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=89.2
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++.... +..+++++.+|..+
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----g~~~v~~~~~d~~~- 173 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----DIGNVRTSRSDIAD- 173 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----CCTTEEEECSCTTT-
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECchhc-
Confidence 3444443 6788999999999999999999875566799999999999999999987620 23579999999543
Q ss_pred cccCCCCCCeeEEEecCCh-HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK-EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+ ++++||+|+++.+- ..+++.+.+.|+|||++++.++..
T Consensus 174 -~~--~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 174 -FI--SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp -CC--CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -cC--cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 34 66789999997653 357899999999999999998765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=114.53 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=85.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC--
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH-- 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-- 125 (206)
..++.+|||+|||+|..+..+++...+..+++|+|+|+.+++.+++++.... ....+++++.+|. ...++ ++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~v~~~~~d~-~~~~~--~~~~ 107 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP---DTYKNVSFKISSS-DDFKF--LGAD 107 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECCT-TCCGG--GCTT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCCCceEEEEcCH-HhCCc--cccc
Confidence 3578999999999999999999765466799999999999999999987630 1236899999994 33334 44
Q ss_pred ----CCeeEEEecCChH-----HHHHHHHhcccCCcEEEEEec
Q psy10573 126 ----GSTRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ----~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++||+|++...++ .+++++.++|+|||.+++..+
T Consensus 108 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 108 SVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp TTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEec
Confidence 8999999988764 478999999999999988543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=113.00 Aligned_cols=120 Identities=24% Similarity=0.286 Sum_probs=97.0
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....++..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++...+. ..+++++
T Consensus 96 ~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~ 169 (277)
T 1o54_A 96 VYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIK 169 (277)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEE
T ss_pred cCHHHHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEE
Confidence 34455556666665 78899999999999999999998866777999999999999999999876321 1478999
Q ss_pred EcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+|..+. + ++++||+|+++.+.. .+++.+.++|+|||++++..+..
T Consensus 170 ~~d~~~~--~--~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 170 VRDISEG--F--DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp CCCGGGC--C--SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ECCHHHc--c--cCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9995432 4 667899999987654 68899999999999999988764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-15 Score=109.88 Aligned_cols=121 Identities=17% Similarity=0.053 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+...+.+.+.. ..++.+|||+|||+|.++..++... . .+|+++|+|+.+++.+++++...+. ...+++++.+|
T Consensus 39 ~~~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d 112 (201)
T 2ift_A 39 RVKETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSRQ-A-KKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQS 112 (201)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTT-C-SEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSC
T ss_pred HHHHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHcc-C-CEEEEEECCHHHHHHHHHHHHHhCC---CccceEEEECC
Confidence 445555565542 1267899999999999999876643 2 4899999999999999999887331 01479999999
Q ss_pred cccccccCCCCCC-eeEEEecCCh-----HHHHHHH--HhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGS-TRVIQSCWTK-----EEYNSWL--LDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~-~D~i~~~~~~-----~~~~~~~--~~~L~~gG~l~~~~~~~~ 162 (206)
..+..+ .+++++ ||+|++++++ ..+++.+ .++|+|||++++.+....
T Consensus 113 ~~~~~~-~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 113 SLDFLK-QPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp HHHHTT-SCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred HHHHHH-hhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 443222 114577 9999998873 3466666 567999999999877654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-15 Score=111.43 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..+++++
T Consensus 48 ~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~ 121 (225)
T 3tr6_A 48 TAPEQAQLLALLVK--LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL----SDKIGLR 121 (225)
T ss_dssp CCHHHHHHHHHHHH--HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred cCHHHHHHHHHHHH--hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEE
Confidence 34444444433333 45678999999999999999998764467999999999999999999877332 2469999
Q ss_pred Ecccccccc-cC--CCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecC
Q psy10573 112 AYFWLRHLL-LT--NPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 112 ~~d~~~~~~-~~--~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|..+..+ +. ...++||+|+++... ..+++.+.++|+|||++++....
T Consensus 122 ~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 122 LSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp ESCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred eCCHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999433222 10 011688999998774 34678999999999999886443
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=113.40 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.+.....+.+.+. .+.++.+|||+|||+|.++..+++..+...+++++|+|+.+++.+++++.... .+++++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~ 78 (284)
T 3gu3_A 6 NDDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLE 78 (284)
T ss_dssp CHHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEE
T ss_pred chHHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEE
Confidence 3445566666553 25788999999999999999998876335799999999999999999887522 3799999
Q ss_pred cccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+|.. ..++ +++||+|++...++ .+++++.++|+|||.+++..+.
T Consensus 79 ~d~~-~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 79 GDAT-EIEL---NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCTT-TCCC---SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cchh-hcCc---CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9943 3333 46899999987754 4778999999999999988776
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=112.23 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=94.7
Q ss_pred cccccccccCccccCcHHHHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
|++.......+..++.|. ...+.+.+...+ .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.+++++.
T Consensus 77 f~~~~~~~~~~~~ipr~~-te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~ 154 (276)
T 2b3t_A 77 FWSLPLFVSPATLIPRPD-TECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQ 154 (276)
T ss_dssp ETTEEEECCTTSCCCCTT-HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHH
T ss_pred ECCceEEeCCCCcccCch-HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 344344434344444444 233333332222 567899999999999999998776 66799999999999999999987
Q ss_pred ccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHHHHH
Q psy10573 97 KGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNSWLL 145 (206)
Q Consensus 97 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~~~~ 145 (206)
.. +..+++++.+|+.+ .+ ++++||+|++++++ ..+++.+.
T Consensus 155 ~~-----~~~~v~~~~~d~~~--~~--~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~ 225 (276)
T 2b3t_A 155 HL-----AIKNIHILQSDWFS--AL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSR 225 (276)
T ss_dssp HH-----TCCSEEEECCSTTG--GG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHG
T ss_pred Hc-----CCCceEEEEcchhh--hc--ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHH
Confidence 63 23479999999543 23 46788999998532 34668889
Q ss_pred hcccCCcEEEEEecCC
Q psy10573 146 DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 146 ~~L~~gG~l~~~~~~~ 161 (206)
+.|+|||++++.....
T Consensus 226 ~~LkpgG~l~~~~~~~ 241 (276)
T 2b3t_A 226 NALVSGGFLLLEHGWQ 241 (276)
T ss_dssp GGEEEEEEEEEECCSS
T ss_pred HhcCCCCEEEEEECch
Confidence 9999999999876543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-14 Score=104.39 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=94.1
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
.+...+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+. ..++.+
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~ 86 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL----GDNVTL 86 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC----CTTEEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCC----CcceEE
Confidence 455667777777775 7888999999999999999998755 4999999999999999998876321 157899
Q ss_pred EEcccccccccCCCC-CCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 111 VAYFWLRHLLLTNPH-GSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~-~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+|..+ .+ +. ++||+|+++..+ ..+++.+.++|+|||.+++..+..
T Consensus 87 ~~~d~~~--~~--~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 87 MEGDAPE--AL--CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp EESCHHH--HH--TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred EecCHHH--hc--ccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCc
Confidence 9998433 22 33 578999998774 567889999999999999987653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=113.85 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~ 126 (206)
..++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++....+ .++.++.+|..+. .++ +++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~--~~~ 127 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTL--PDG 127 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGS--CTT
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhhccc--CCC
Confidence 4678899999999999999986532 2389999999999999999876522 5789999994332 256 889
Q ss_pred CeeEEEe-cCC-----hH-----HHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQS-CWT-----KE-----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~-~~~-----~~-----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+||+|++ ... .+ .+++++.++|||||++++...
T Consensus 128 ~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 128 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999998 222 11 357889999999999987643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-15 Score=113.89 Aligned_cols=120 Identities=23% Similarity=0.210 Sum_probs=89.8
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+...+. ..++.+|||+|||+|+.+..+++...+.++++++|+++.+++.+++++...+. ..+++++
T Consensus 63 ~~~~~~~ll~~l~~--~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~i~~~ 136 (247)
T 1sui_A 63 TSADEGQFLSMLLK--LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFR 136 (247)
T ss_dssp CCHHHHHHHHHHHH--HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEE
T ss_pred cCHHHHHHHHHHHH--hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEE
Confidence 34444444433333 45678999999999999999998874477999999999999999999887332 2579999
Q ss_pred EcccccccccCC-----CCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEe
Q psy10573 112 AYFWLRHLLLTN-----PHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 112 ~~d~~~~~~~~~-----~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|..+..+. + ++++||+|+++... ..+++.+.++|+|||++++..
T Consensus 137 ~gda~~~l~~-l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 137 EGPALPVLDE-MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp ESCHHHHHHH-HHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred ECCHHHHHHH-HHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9994332221 0 15678999997653 457789999999999998753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-14 Score=102.35 Aligned_cols=117 Identities=20% Similarity=0.092 Sum_probs=93.4
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
......+...+.+.+. ..++.+|||+|||+|.++..+++ +..+++++|+++.+++.+++++...+ ..+++
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~ 86 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-----IKNCQ 86 (183)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-----CCSEE
T ss_pred CcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEE
Confidence 3456677778888775 67889999999999999999987 45699999999999999999987732 35799
Q ss_pred EEEcccccccccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++.+|..+ ++ ++++||+|+++.. ...+++.+.+. |||.+++......
T Consensus 87 ~~~~d~~~--~~--~~~~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 87 IIKGRAED--VL--DKLEFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp EEESCHHH--HG--GGCCCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred EEECCccc--cc--cCCCCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 99999543 44 5577899999865 34566777777 9999999887644
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=111.94 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCceEEEEcccccccc--cCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVAYFWLRHLL--LTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~--~~~~ 124 (206)
..++.+|||||||+|.++..+++.. +...++|+|+++.+++.|++++... ........++.++.+|.....+ + +
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~--~ 120 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--Y 120 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC--C
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC--C
Confidence 4567799999999999999998776 6679999999999999998876430 0000123689999999544333 4 7
Q ss_pred CCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++||.|++..+. ..+++.+.++|+|||.|++.+...
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 8899999886543 247899999999999999987653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=105.70 Aligned_cols=123 Identities=18% Similarity=0.064 Sum_probs=92.0
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
....+...+.+.+...+.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++...+ . +++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~--~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~ 93 (171)
T 1ws6_A 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-W--EAVLVEKDPEAVRLLKENVRRTG-----L-GARVV 93 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-C--EEEEECCCHHHHHHHHHHHHHHT-----C-CCEEE
T ss_pred CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC-C--eEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEE
Confidence 44556666777765334478899999999999999998764 3 59999999999999999987622 2 78999
Q ss_pred Ecccccccc-cCCCCCCeeEEEecCCh----HHHHHHHH--hcccCCcEEEEEecCCCC
Q psy10573 112 AYFWLRHLL-LTNPHGSTRVIQSCWTK----EEYNSWLL--DQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 112 ~~d~~~~~~-~~~~~~~~D~i~~~~~~----~~~~~~~~--~~L~~gG~l~~~~~~~~~ 163 (206)
.+|..+..+ ....+++||+|++++++ ...++.+. ++|+|||++++.+.....
T Consensus 94 ~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 94 ALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred eccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 999443221 10013478999998654 45667777 899999999999887764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=118.26 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=90.9
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
+.+++.+. ..++.+|||+|||+|.++..+++.. |..+++++|+++.+++.+++++..++.+ ...+++++.+|..+
T Consensus 212 ~~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 212 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALS 286 (375)
T ss_dssp HHHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTTT
T ss_pred HHHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhhc
Confidence 34555554 3556899999999999999999876 6679999999999999999999874321 12358889999443
Q ss_pred ccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ ++++||+|+++++++ .+++.+.+.|+|||+++++.....
T Consensus 287 --~~--~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 287 --GV--EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp --TC--CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred --cC--CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 34 678899999998865 357899999999999999876543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=109.15 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=86.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.......++.++.+|. ...++ ++++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~--~~~~ 101 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSF--HDSS 101 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCS--CTTC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCC--CCCc
Confidence 568899999999999999999876 34999999999999999998876433211224689999983 33445 7889
Q ss_pred eeEEEecCChH---------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKE---------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~---------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|++...++ .+++++.++|+|||.+++..+..
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 99999987653 46789999999999999986643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=114.56 Aligned_cols=107 Identities=19% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++... +..+++++.+|.... +. .+++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~-----g~~~v~~~~~D~~~~-~~--~~~~ 187 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL-----GVLNVILFHSSSLHI-GE--LNVE 187 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-----TCCSEEEESSCGGGG-GG--GCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh-----CCCeEEEEECChhhc-cc--cccc
Confidence 678899999999999999999988755679999999999999999999873 335799999994332 22 2567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++.++ ..+++++.+.|+|||++++++.+..
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 8999997653 2567889999999999999877643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=112.08 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=84.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+...+.+.+ ..+|.+|||||||+|..+..+++.. + .++++||+++.+++.|+++....+ .++.++.+|+
T Consensus 49 ~m~~~a~~~---~~~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a 117 (236)
T 3orh_A 49 YMHALAAAA---SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLW 117 (236)
T ss_dssp HHHHHHHHH---TTTCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCH
T ss_pred HHHHHHHhh---ccCCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehH
Confidence 444555554 4788999999999999999987653 3 489999999999999999887632 4688888884
Q ss_pred ccc-cccCCCCCCeeEEEecCCh-----------HHHHHHHHhcccCCcEEEEEe
Q psy10573 116 LRH-LLLTNPHGSTRVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 116 ~~~-~~~~~~~~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
... ..+ ++++||.|+.+... ..+++++.++|||||+|++..
T Consensus 118 ~~~~~~~--~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 118 EDVAPTL--PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HHHGGGS--CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Hhhcccc--cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 332 234 88899999875431 246688999999999998753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-15 Score=116.56 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=88.5
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
+.+...+.++.+|||+|||+|..+..++....+..+++++|+++.+++.+++++...+. ..+++++.+|.. ..++
T Consensus 110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~-~~~~ 184 (305)
T 3ocj_A 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL----AGQITLHRQDAW-KLDT 184 (305)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEECCGG-GCCC
T ss_pred HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECchh-cCCc
Confidence 33343468899999999999999998853333677999999999999999999876332 246999999943 3445
Q ss_pred CCCCCCeeEEEecCChHH---------HHHHHHhcccCCcEEEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWTKEE---------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~---------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+ ++||+|+++..+++ +++++.++|+|||++++.....
T Consensus 185 --~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 185 --R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp --C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred --c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 5 88999999886543 5789999999999999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=109.08 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=85.9
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++. .+++++.+|.
T Consensus 34 ~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~- 98 (220)
T 3hnr_A 34 YEDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDF- 98 (220)
T ss_dssp HHHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCS-
T ss_pred HHHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCCh-
Confidence 345555555 457899999999999999999875 3499999999999999998764 3688888883
Q ss_pred cccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ + ++||+|++...+++ +++++.++|+|||.+++..+..
T Consensus 99 ~~~~~--~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 99 LSFEV--P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp SSCCC--C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred hhcCC--C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 33344 4 88999999887753 6789999999999999987553
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-14 Score=108.39 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=85.7
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+. ..++.+|||+|||+|.++..+++.. . .+++++|+++.+++.++++... .+++++.+|.. .
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~-~ 100 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG-A-SYVLGLDLSEKMLARARAAGPD--------TGITYERADLD-K 100 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGG-G
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC-C-CeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChh-h
Confidence 4444443 4578899999999999999988752 2 2899999999999999987653 46899999943 3
Q ss_pred cccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.++ ++++||+|++...++ .+++++.++|+|||++++.+++
T Consensus 101 ~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 101 LHL--PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp CCC--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccC--CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 445 788999999987764 4678999999999999998764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-14 Score=110.53 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=85.8
Q ss_pred CC-CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~-~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+. ++.+|||+|||+|.++..+++.. +. +++++|+++.+++.|++++..++. ..+++++.+|..+... .++++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~-~~-~v~gvDi~~~~~~~a~~n~~~~~~----~~~v~~~~~D~~~~~~-~~~~~ 118 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRT-KA-KIVGVEIQERLADMAKRSVAYNQL----EDQIEIIEYDLKKITD-LIPKE 118 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTC-CC-EEEEECCSHHHHHHHHHHHHHTTC----TTTEEEECSCGGGGGG-TSCTT
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhc-CC-cEEEEECCHHHHHHHHHHHHHCCC----cccEEEEECcHHHhhh-hhccC
Confidence 56 78999999999999999998764 33 999999999999999999987432 2469999999544332 12678
Q ss_pred CeeEEEecCCh--------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTK--------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~--------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+||+|++++++ ..+++.+.++|+|||++++.....
T Consensus 119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE 179 (259)
T ss_dssp CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence 99999998664 236688999999999999976543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=109.95 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.+.....+...+. ..++.+|||+|||+|+.+..+++..++.++++++|+++.+++.+++++...+. ..+++++.
T Consensus 55 ~~~~~~~l~~l~~--~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~ 128 (237)
T 3c3y_A 55 SPLAGQLMSFVLK--LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV----EHKINFIE 128 (237)
T ss_dssp CHHHHHHHHHHHH--HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEE
T ss_pred CHHHHHHHHHHHH--hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence 4444333333333 45678999999999999999998875478999999999999999999887332 24799999
Q ss_pred cccccccc-c---CCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEe
Q psy10573 113 YFWLRHLL-L---TNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 113 ~d~~~~~~-~---~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|..+..+ + ..+.++||+|+++.... .+++.+.++|+|||++++..
T Consensus 129 gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 129 SDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp SCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99433222 1 00256789999987653 46788999999999998864
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=112.46 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+.+.+. ..++.+|||+|||+|.++..+++ +..+++|+|+|+.+++.++++ .+++++
T Consensus 18 ~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~ 81 (261)
T 3ege_A 18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVH-----------PQVEWF 81 (261)
T ss_dssp CCHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCC-----------TTEEEE
T ss_pred ccHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc-----------cCCEEE
Confidence 34556777777775 67889999999999999999986 456999999999888877543 278999
Q ss_pred EcccccccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+|. ...++ ++++||+|++...+++ +++++.++|+ ||.+++..+...
T Consensus 82 ~~d~-~~~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 82 TGYA-ENLAL--PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp CCCT-TSCCS--CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred ECch-hhCCC--CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 9994 34556 7889999999887644 7799999999 998888777643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-14 Score=103.93 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=93.0
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
.....+...+.+.+.. ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+. ..++++
T Consensus 26 p~~~~~~~~~~~~l~~-~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~ 98 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKE----PEKFEV 98 (187)
T ss_dssp CCCHHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTC----GGGEEE
T ss_pred cCHHHHHHHHHHHHHh-hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCC----CcceEE
Confidence 3445566677777642 357889999999999999988763 335999999999999999999876321 247999
Q ss_pred EEcccccccc-cCCCCCCeeEEEecCChH-----HHHHHH--HhcccCCcEEEEEecCCCC
Q psy10573 111 VAYFWLRHLL-LTNPHGSTRVIQSCWTKE-----EYNSWL--LDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 111 ~~~d~~~~~~-~~~~~~~~D~i~~~~~~~-----~~~~~~--~~~L~~gG~l~~~~~~~~~ 163 (206)
+.+|+.+..+ +..++++||+|++++++. ..++.+ .++|+|||++++.+.....
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 9999433211 100367889999987743 355556 7789999999998887653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=110.52 Aligned_cols=106 Identities=17% Similarity=0.057 Sum_probs=84.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++... +..+++++.+|..+...-...+++|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~l~~v~~~~~d~~~~~~~~~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVL-----GLKGARALWGRAEVLAREAGHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHH-----TCSSEEEEECCHHHHTTSTTTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHh-----CCCceEEEECcHHHhhcccccCCCc
Confidence 467899999999999999998776 6779999999999999999998873 3357999999943321100124789
Q ss_pred eEEEecCC--hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++... +..+++.+.++|+|||++++....
T Consensus 153 D~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~ 186 (249)
T 3g89_A 153 ARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGP 186 (249)
T ss_dssp EEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred eEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999754 467889999999999999887654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=110.78 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=85.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc---ccCCCceEEEEcccccccccCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE---LLDQGRVQFVAYFWLRHLLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~~~i~~~~~d~~~~~~~~~~ 124 (206)
+.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++...... ..+..++.++.+|..+..+-.++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 3467899999999999999999876 6679999999999999999887652000 00335899999995443331127
Q ss_pred CCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 125 HGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 125 ~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+++|.|++..+. ..+++.+.++|+|||++++.+..
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 8899999865432 36889999999999999987543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=124.76 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=101.3
Q ss_pred cCccccccccccCccccCcHH---HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPH---IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a 91 (206)
...|.+...+......+..|. ....+.+.+. ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|
T Consensus 685 ~lay~dea~p~me~gtFsPPL~eqRle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~A 762 (950)
T 3htx_A 685 LLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA 762 (950)
T ss_dssp EEEEECSCCCCCCCCCSSSCHHHHHHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHH
T ss_pred hhccccchhhHHhhCcCCchHHHHHHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 445666665555444444433 2334455554 35789999999999999999987654446999999999999999
Q ss_pred HHhhhcc-CccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 92 IKNIDKG-NSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 92 ~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++++... +.+..+..+++++.+|. ...++ ++++||+|++...+++ +++++.++|+|| .+++++++.
T Consensus 763 ReRLa~~lnAkr~gl~nVefiqGDa-~dLp~--~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 763 AKMLHVKLNKEACNVKSATLYDGSI-LEFDS--RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp HHHHHHHTTTTCSSCSEEEEEESCT-TSCCT--TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred HHHhhhccchhhcCCCceEEEECch-HhCCc--ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9876531 11112346899999993 33455 6788999999888765 457889999999 888887765
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=109.58 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=89.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHH------HHHHHHHhhhccCccccCCCceEE
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME------LAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~------~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
...+++.+. +.++.+|||+|||+|.++..+++..++.++++++|+|+. +++.+++++...+. ..++++
T Consensus 32 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~----~~~v~~ 105 (275)
T 3bkx_A 32 RLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL----GDRLTV 105 (275)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT----GGGEEE
T ss_pred HHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC----CCceEE
Confidence 444455554 678899999999999999999988766679999999997 89999998876321 147999
Q ss_pred EEcc-cc-cccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 111 VAYF-WL-RHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 111 ~~~d-~~-~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+| .. ...++ ++++||+|++...+++ +.+.+..+++|||++++.....
T Consensus 106 ~~~d~~~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 106 HFNTNLSDDLGPI--ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp ECSCCTTTCCGGG--TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred EECChhhhccCCC--CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 9887 32 23445 7789999999887754 4466666677799999987654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=117.25 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=88.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc---cCCCceEEEEccccccc-----
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL---LDQGRVQFVAYFWLRHL----- 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~---~~~~~i~~~~~d~~~~~----- 119 (206)
..++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++....... ...++++++.+|..+..
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3478899999999999999999887677899999999999999999875420000 11258999999943321
Q ss_pred ccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 120 LLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++ ++++||+|+++..+++ +++++.++|+|||++++....
T Consensus 161 ~~--~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 161 GV--PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CC--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CC--CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 55 8899999999887654 779999999999999997543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-14 Score=108.90 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=83.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. ..+++++.+|. ...++ ++++
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~-~~~~~--~~~~ 158 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASM-ETATL--PPNT 158 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCG-GGCCC--CSSC
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccH-HHCCC--CCCC
Confidence 3578899999999999999998765 23799999999999999998764 15789999994 33455 7789
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...+++ +++++.++|+|||++++..+.
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 999999877543 568899999999999998763
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=107.33 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++++.+|..+. + ++++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~-~---~~~~ 114 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQF-S---TAEL 114 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTC-C---CSCC
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhC-C---CCCC
Confidence 4567899999999999999998764 3999999999999999998765 24799999994322 1 4678
Q ss_pred eeEEEecCChH---------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE---------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~---------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||.+++.++.
T Consensus 115 fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 115 FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999986653 3478899999999999997644
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=111.21 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc---cCccccCCCceEEEEccccccc-----
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK---GNSELLDQGRVQFVAYFWLRHL----- 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~~~~~~~~~~i~~~~~d~~~~~----- 119 (206)
..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. ++. ..+++++.+|+.+..
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF----SARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGEEEEECCTTCCHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceEEEEeCCHHHHhhhhhh
Confidence 4677899999999999999999876 567999999999999999999875 332 236999999954331
Q ss_pred -ccCCCCCCeeEEEecCCh------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 120 -LLTNPHGSTRVIQSCWTK------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 120 -~~~~~~~~~D~i~~~~~~------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+ ++++||+|++++++ ..+++.+.++|+|||++++.....
T Consensus 109 ~~~--~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 109 AGL--PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ 173 (260)
T ss_dssp TTC--CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred hcc--CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence 24 67889999998543 345788899999999999877653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-15 Score=112.15 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC---
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH--- 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~--- 125 (206)
.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+ . +++++.+|..+ ++ ++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~--~~--~~~~~ 97 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG-----A-VVDWAAADGIE--WL--IERAE 97 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------------CCHHHHHH--HH--HHHHH
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC-----C-ceEEEEcchHh--hh--hhhhh
Confidence 678899999999999999999876 66799999999999999999887622 2 67888888433 23 33
Q ss_pred --CCeeEEEecCCh--------------------------------HHHHHHHHhcccCCcE-EEEEec
Q psy10573 126 --GSTRVIQSCWTK--------------------------------EEYNSWLLDQLVPGGR-MVMPVG 159 (206)
Q Consensus 126 --~~~D~i~~~~~~--------------------------------~~~~~~~~~~L~~gG~-l~~~~~ 159 (206)
++||+|++++++ ..+++.+.++|+|||+ +++...
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 788999997654 4455677899999999 555444
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=106.11 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=85.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+. ...++.+|||+|||+|..+..++.. ++.+++++|+|+.+++.+++++...+ .+++++.+|.
T Consensus 11 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~- 80 (209)
T 2p8j_A 11 LYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDI- 80 (209)
T ss_dssp HHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCT-
T ss_pred HHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECch-
Confidence 444444443 2567899999999999985444433 34599999999999999999876522 4688888884
Q ss_pred cccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
...++ ++++||+|++...++ .+++++.++|+|||.+++..++..
T Consensus 81 ~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 81 RKLPF--KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp TSCCS--CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hhCCC--CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 33445 788999999876653 356888999999999999887643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=105.82 Aligned_cols=105 Identities=26% Similarity=0.295 Sum_probs=83.1
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 119 (206)
..+.+.....++.+|||+|||+|.++..+ + ..+++++|+++.+++.+++++ .++.++.+|. ...
T Consensus 26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~-~~~ 89 (211)
T 2gs9_A 26 EERALKGLLPPGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWG-EAL 89 (211)
T ss_dssp HHHHHHTTCCCCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC----------TTSEEECCCT-TSC
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC----------CCcEEEEccc-ccC
Confidence 34445444568899999999999998876 1 128999999999999999875 3678888883 334
Q ss_pred ccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 120 LLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++ ++++||+|++...++ .+++++.++|+|||.+++..++..
T Consensus 90 ~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 90 PF--PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp CS--CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CC--CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 55 788999999987754 477899999999999999987654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-14 Score=105.23 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=87.4
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. .+.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++. +..+++++.+|..
T Consensus 34 ~~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~~d~~ 100 (218)
T 3ou2_A 34 APAALERLR-AGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRH---------GLDNVEFRQQDLF 100 (218)
T ss_dssp HHHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGG---------CCTTEEEEECCTT
T ss_pred HHHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhc---------CCCCeEEEecccc
Confidence 444555554 25677899999999999999998863 4999999999999999871 1257999999943
Q ss_pred cccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+. + ++++||+|++...++ .+++++.++|+|||.+++...+..
T Consensus 101 ~~--~--~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 101 DW--T--PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp SC--C--CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cC--C--CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 32 4 788999999988764 467889999999999999988764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=109.76 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=85.4
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++. ++++++.+|...
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~ 89 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLAT 89 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTT
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhh
Confidence 34444443 4678899999999999999999886 5679999999999999998872 468899988432
Q ss_pred ccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+ ++++||+|++...+++ +++++.++|+|||.+++.++..
T Consensus 90 -~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 90 -WK---PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp -CC---CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred -cC---ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 21 4678999999887654 6788999999999999988654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=108.80 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++... +..++.++.+|. ...++ ++++||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~d~-~~~~~--~~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEE-----GKRVRNYFCCGL-QDFTP--EPDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGG-----GGGEEEEEECCG-GGCCC--CSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhc-----CCceEEEEEcCh-hhcCC--CCCCEE
Confidence 58899999999999999887654 349999999999999999988752 124688999983 33444 677899
Q ss_pred EEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|++...++ .+++++.++|+|||++++..+...
T Consensus 149 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 999987753 467889999999999999766543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=105.98 Aligned_cols=97 Identities=22% Similarity=0.180 Sum_probs=81.5
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. +++.++.+|. ...++ ++++||+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~-~~~~~--~~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH----------PSVTFHHGTI-TDLSD--SPKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC----------TTSEEECCCG-GGGGG--SCCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcc-ccccc--CCCCeEE
Confidence 789999999999999999875 349999999999999999873 3688999994 33455 7889999
Q ss_pred EEecCCh--------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 131 IQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 131 i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
|++...+ ..+++++.++|+|||.+++..+....
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 106 LLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp EEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred EEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 9997654 44779999999999999999877653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=109.84 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=82.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-CCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT-NPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~ 127 (206)
.++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++... +..+++++.+|..+ .++. ..+++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~-~~~~~~~~~~ 141 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEAL-----QLENTTFCHDRAET-FGQRKDVRES 141 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHH-----TCSSEEEEESCHHH-HTTCTTTTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCEEEEeccHHH-hcccccccCC
Confidence 467899999999999999998654 6679999999999999999998763 23479999999432 2220 01578
Q ss_pred eeEEEecCC--hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++... ...+++.+.++|+|||++++....
T Consensus 142 fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 142 YDIVTARAVARLSVLSELCLPLVKKNGLFVALKAA 176 (240)
T ss_dssp EEEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ccEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999998754 356889999999999999887543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-14 Score=106.54 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=82.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..+++++.+|..+..+. .++ |
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~-f 127 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRVELQVGDPLGIAAG--QRD-I 127 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGEEEEESCHHHHHTT--CCS-E
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceEEEEEecHHHHhcc--CCC-C
Confidence 4678999999999999999998764367999999999999999999876332 24699999995443333 345 8
Q ss_pred eEEEecCCh---HHHHHHHHhcccCCcEEEEEe
Q psy10573 129 RVIQSCWTK---EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 129 D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|+|+++... ..+++.+.++|+|||++++..
T Consensus 128 D~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 128 DILFMDCDVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEEETTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CEEEEcCChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 999987543 457899999999999998853
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-14 Score=111.51 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=78.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc-cCCCceEEEEcccc-----cc--ccc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL-LDQGRVQFVAYFWL-----RH--LLL 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~i~~~~~d~~-----~~--~~~ 121 (206)
++.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|++++....... ....++++...|.. .. .++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 5789999999999877666543 23489999999999999999886522100 00013667777731 11 124
Q ss_pred CCCCCCeeEEEecCChH---------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKE---------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++++||+|++...++ .+++++.++|+|||++++++++..
T Consensus 126 --~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 126 --YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp --CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred --cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 678999999876553 477899999999999999988643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-14 Score=107.99 Aligned_cols=98 Identities=18% Similarity=0.119 Sum_probs=80.3
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
.+.++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++ +.++.+|..+. .++ ++
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~~--~~ 99 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKSL--PD 99 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHTS--CT
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhhc--CC
Confidence 35788999999999999999988763 3899999999999999753 56777884332 256 78
Q ss_pred CCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++||+|++...++ .+++++.++|+|||++++.+++..
T Consensus 100 ~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 100 KYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp TCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred CCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 8999999987654 467899999999999999988754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.4e-14 Score=106.26 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++... .+++++.+|......+....++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTCGGGGTTTCCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCCcchhhcccCC
Confidence 467889999999999999999988766679999999999999999887651 5799999994432211102458
Q ss_pred eeEEEecCChH----HHHHHHHhcccCCcEEEEEe
Q psy10573 128 TRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 128 ~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~ 158 (206)
||+|+++.+.. .++.++.+.|+|||++++..
T Consensus 144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999987643 34788999999999999874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=102.82 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=83.2
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++... ..++++++.+|..+
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~d~~~- 91 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIE-----NLDNLHTRVVDLNN- 91 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHH-----TCTTEEEEECCGGG-
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhC-----CCCCcEEEEcchhh-
Confidence 3445554 456789999999999999999875 349999999999999999988762 23478999999432
Q ss_pred cccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 119 LLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.++ +++||+|++...++ .+++++.++|+|||.+++...
T Consensus 92 ~~~---~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 92 LTF---DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp CCC---CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCC---CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 222 67889999987654 367889999999999877654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=106.12 Aligned_cols=122 Identities=26% Similarity=0.282 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..+++++.
T Consensus 43 ~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~ 116 (223)
T 3duw_A 43 SPTQGKFLQLLVQ--IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL----NDRVEVRT 116 (223)
T ss_dssp CHHHHHHHHHHHH--HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred CHHHHHHHHHHHH--hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence 3444444443333 46789999999999999999998874477999999999999999999876332 24699999
Q ss_pred cccccccc-cC-CCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecC
Q psy10573 113 YFWLRHLL-LT-NPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 113 ~d~~~~~~-~~-~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+|..+..+ +. ...++||+|+++.... .+++.+.++|+|||++++....
T Consensus 117 ~d~~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 117 GLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp SCHHHHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99433211 10 0125679999988654 4678899999999998876443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-14 Score=105.54 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++ +|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+ .++.++.+|.. ..++ ++++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~-~~~~--~~~~ 94 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLA-DFDI--VADA 94 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTT-TBSC--CTTT
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChh-hcCC--CcCC
Confidence 4566 9999999999999998875 3499999999999999999887522 26889988843 3344 7788
Q ss_pred eeEEEecCC------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWT------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++... ...+++++.++|+|||.+++..+...
T Consensus 95 fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 95 WEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp CSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred ccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 999998632 24477899999999999999987654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=110.15 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=84.4
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+.+.+.....++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++. ++.++.+|.
T Consensus 36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~ 102 (263)
T 3pfg_A 36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP----------DAVLHHGDM 102 (263)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT----------TSEEEECCT
T ss_pred HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCEEEECCh
Confidence 3455556665556778999999999999999998753 389999999999999998752 688999984
Q ss_pred ccccccCCCCCCeeEEEecC-ChHH---------HHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCW-TKEE---------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~-~~~~---------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+ .++ +++||+|++.. .+++ +++++.++|+|||.+++..+.
T Consensus 103 ~~-~~~---~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 103 RD-FSL---GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp TT-CCC---SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred HH-CCc---cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 32 222 67889999986 5433 568899999999999997543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=107.95 Aligned_cols=104 Identities=24% Similarity=0.259 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--cccCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH--LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 125 (206)
+.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+.++.... .+++++.+|..+. .++ .+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~--~~ 145 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKYRM--LI 145 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGGGG--GC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhhcc--cC
Confidence 567899999999999999999988766679999999998888777766541 4789999995432 233 56
Q ss_pred CCeeEEEecCChH----HHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++||+|+++.+.. .++.++.+.|+|||++++.+..
T Consensus 146 ~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 146 AMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 7899999986632 2467899999999999997654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=113.55 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=91.0
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHhhhc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS-------IKNIDK 97 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a-------~~~~~~ 97 (206)
.++++.+ |.....+++.+. +.++.+|||+|||+|.++..+++..+ ..+++|+|+++.+++.| ++++..
T Consensus 221 ~~yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~ 295 (433)
T 1u2z_A 221 YVYGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKL 295 (433)
T ss_dssp GCCCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence 4445543 778888888876 78899999999999999999998763 34899999999999988 777765
Q ss_pred cCccccCCCceEEEEcc-cccccccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEE
Q psy10573 98 GNSELLDQGRVQFVAYF-WLRHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 98 ~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+. ...+++++.+| .....++....++||+|+++..+ ...++++.++|+|||++++.
T Consensus 296 ~Gl---~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 296 YGM---RLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TTB---CCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cCC---CCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 221 03589999875 21111110013456999986332 34567999999999999987
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=110.08 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=87.4
Q ss_pred HHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
...+.+.+...+ .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++. .++.++.+|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~ 139 (269)
T 1p91_A 71 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASS 139 (269)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCT
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcch
Confidence 344444444333 578899999999999999998875 4569999999999999998764 3578888883
Q ss_pred ccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
...++ ++++||+|++.... ..++++.++|+|||.+++.++...
T Consensus 140 -~~~~~--~~~~fD~v~~~~~~-~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 140 -HRLPF--SDTSMDAIIRIYAP-CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp -TSCSB--CTTCEEEEEEESCC-CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred -hhCCC--CCCceeEEEEeCCh-hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 33455 77899999987663 457889999999999999988754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=107.63 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=82.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..+ .+++++|+|+.+++.+++++...+. ..+++++.+|.. .+ + ++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~---~~--~-~~ 129 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGWE---QF--D-EP 129 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCGG---GC--C-CC
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC----CCCeEEEECChh---hC--C-CC
Confidence 46788999999999999999986653 3999999999999999998876321 247899998842 23 4 77
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|++...++ .+++++.++|+|||.+++..+..
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 89999986654 46789999999999999987654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=110.02 Aligned_cols=110 Identities=17% Similarity=0.030 Sum_probs=86.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
..++.+|||+|||+|..+..++......++|+++|+++.+++.+++++... +..+++++.+|...... +....+
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~-----g~~~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM-----GVLNTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCHHHHHHHHHHTTC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh-----CCCcEEEEeCChHhcchhhhhccc
Confidence 678899999999999999999987644479999999999999999998873 33589999999332211 000256
Q ss_pred CeeEEEecCCh------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|++++++ ..+++.+.+.|+|||++++++.+..
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 78999998543 3467888999999999999887654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=103.88 Aligned_cols=102 Identities=17% Similarity=0.123 Sum_probs=84.3
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 119 (206)
+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. ++++++.+| .
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~----------~~v~~~~~d----~ 69 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF----------DSVITLSDP----K 69 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC----------TTSEEESSG----G
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC----------CCcEEEeCC----C
Confidence 344454 6788899999999999999998765 29999999999999999872 478888887 4
Q ss_pred ccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 120 LLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++ ++++||+|++...++ .+++++.++|+|||++++..+...
T Consensus 70 ~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 70 EI--PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp GS--CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred CC--CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 45 788999999988765 467999999999999999876544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=110.12 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=88.5
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc--ccCCCceEEEEc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE--LLDQGRVQFVAY 113 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~i~~~~~ 113 (206)
+...+.+.+.....++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...... .....+++++.+
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 444555555544457889999999999999998863 3459999999999999999987641100 001247899999
Q ss_pred cccccc---ccCCCCCCeeEEEecCChH----------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 114 FWLRHL---LLTNPHGSTRVIQSCWTKE----------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 114 d~~~~~---~~~~~~~~~D~i~~~~~~~----------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|..... ++..++++||+|++...++ .+++++.++|+|||.+++++++.
T Consensus 98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 98 DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 943321 2311345899999987763 35688899999999999998864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-14 Score=109.35 Aligned_cols=107 Identities=24% Similarity=0.301 Sum_probs=85.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+. ..++.+|||+|||+|.++..+++ +..+++++|+|+.+++.+++++ +++.++.+|..
T Consensus 46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~ 110 (279)
T 3ccf_A 46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY----------PHLHFDVADAR 110 (279)
T ss_dssp CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTT
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChh
Confidence 344555554 57889999999999999999987 4469999999999999998765 36788888843
Q ss_pred cccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..++ +++||+|++...+++ +++++.++|+|||++++..+...
T Consensus 111 -~~~~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 111 -NFRV---DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp -TCCC---SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred -hCCc---CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 3333 478999999887653 77999999999999999887653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-14 Score=108.45 Aligned_cols=113 Identities=22% Similarity=0.341 Sum_probs=88.0
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+...+.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..++ .. ++++.+|.
T Consensus 106 tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g-~--~v~gvDi~~~~v~~a~~n~~~~~-----~~-v~~~~~d~ 176 (254)
T 2nxc_A 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-G--KALGVDIDPMVLPQAEANAKRNG-----VR-PRFLEGSL 176 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCGGGHHHHHHHHHHTT-----CC-CEEEESCH
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECCh
Confidence 4445555555556788999999999999999888743 3 99999999999999999987633 23 88888884
Q ss_pred ccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
... + ++++||+|+++...+ .+++.+.+.|+|||+++++....
T Consensus 177 ~~~--~--~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 177 EAA--L--PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp HHH--G--GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred hhc--C--cCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeecc
Confidence 432 3 566789999987654 46688899999999999875543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-14 Score=105.83 Aligned_cols=110 Identities=21% Similarity=0.185 Sum_probs=86.3
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
+.+...+.++.+|+|+|||+|.++..+++.. +..+|+++|+++.+++.|++++..++.+ .+++++.+|..+. +
T Consensus 7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~----~~i~~~~~d~l~~--l 79 (225)
T 3kr9_A 7 ELVASFVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLK----EKIQVRLANGLAA--F 79 (225)
T ss_dssp HHHHTTSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGG--C
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEECchhhh--c
Confidence 4455567889999999999999999998764 6679999999999999999999885432 4799999994332 2
Q ss_pred CCCCC-CeeEEEecCC----hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHG-STRVIQSCWT----KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~-~~D~i~~~~~----~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.+ .||+|++... ...+++.+...|+++|+++++...
T Consensus 80 --~~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~ 121 (225)
T 3kr9_A 80 --EETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNN 121 (225)
T ss_dssp --CGGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred --ccCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 333 5798876443 356778889999999999987654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=110.85 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++....... ....++.+..+|
T Consensus 44 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d 117 (293)
T 3thr_A 44 EYKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEAN 117 (293)
T ss_dssp HHHHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECC
T ss_pred HHHHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecC
Confidence 34455555554 4578899999999999999998753 39999999999999999876432110 112467888888
Q ss_pred cccccc---cCCCCCCeeEEEec-CCh-------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 115 WLRHLL---LTNPHGSTRVIQSC-WTK-------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 115 ~~~~~~---~~~~~~~~D~i~~~-~~~-------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.. .+ + ++++||+|++. ..+ ..+++++.++|+|||++++.+++
T Consensus 118 ~~~-~~~~~~--~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 118 WLT-LDKDVP--AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GGG-HHHHSC--CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhh-Cccccc--cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 332 22 4 77899999996 443 34778999999999999998764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=103.36 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+...+.+.+... ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++... +..+++++.+|
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d 123 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHEL-----KLENIEPVQSR 123 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHT-----TCSSEEEEECC
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCeEEEecc
Confidence 344455544311 1147899999999999999999876 5679999999999999999998763 23469999998
Q ss_pred cccccccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+. . +.++||+|+++.. ...+++.+.+.|+|||.+++.....
T Consensus 124 ~~~~--~--~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 168 (207)
T 1jsx_A 124 VEEF--P--SEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp TTTS--C--CCSCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred hhhC--C--ccCCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4321 1 3567899998743 4568899999999999999886543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-14 Score=106.10 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=85.8
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
+.+...+.++.+|+|+|||+|.++..+++.. +..+|+++|+++.+++.|++++..++. ..+++++.+|..+.. .
T Consensus 13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl----~~~I~~~~gD~l~~~-~ 86 (230)
T 3lec_A 13 QKVANYVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGL----TSKIDVRLANGLSAF-E 86 (230)
T ss_dssp HHHHTTSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGC-C
T ss_pred HHHHHhCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhcc-c
Confidence 3344567889999999999999999998764 667899999999999999999988543 247999999943321 1
Q ss_pred CCCCCCeeEEEecCC----hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWT----KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~----~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++.||+|++... ...+++.....|+++|+++++...
T Consensus 87 --~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 87 --EADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp --GGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred --cccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 2235798875444 455777888889999999888754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=108.22 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=87.6
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.+++++..++ ..++.++.+|..+. +. .+
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~-----l~~~~~~~~d~~~~-~~---~~ 185 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNK-----LNNVIPILADNRDV-EL---KD 185 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTT-----CSSEEEEESCGGGC-CC---TT
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEECChHHc-Cc---cC
Confidence 36788999999999999999999876 45699999999999999999998743 35788999995443 22 56
Q ss_pred CeeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+||+|+++++ ...++..+.+.|+|||++++++...
T Consensus 186 ~~D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 186 VADRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CceEEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 7899999887 3567888999999999999887754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=106.75 Aligned_cols=123 Identities=21% Similarity=0.198 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..+++++
T Consensus 56 ~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~ 129 (232)
T 3cbg_A 56 ISPEQAQFLGLLIS--LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV----AEKISLR 129 (232)
T ss_dssp CCHHHHHHHHHHHH--HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEE
T ss_pred cCHHHHHHHHHHHH--hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEE
Confidence 34544444444333 45678999999999999999998774467999999999999999999876332 1469999
Q ss_pred Ecccccccc-cCCCC--CCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecC
Q psy10573 112 AYFWLRHLL-LTNPH--GSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 112 ~~d~~~~~~-~~~~~--~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|..+..+ +...+ ++||+|+++... ..+++.+.++|+|||++++....
T Consensus 130 ~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 130 LGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp ESCHHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EcCHHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 998432211 10023 778999998664 35778999999999999986443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=105.31 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=80.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc---cccCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH---LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~ 124 (206)
+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++.. ..++.++.+|.... .++ +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~--~ 141 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANI--V 141 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTT--S
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCccccccc--C
Confidence 46788999999999999999998874 56999999999999999988754 15799999984332 233 4
Q ss_pred CCCeeEEEecCCh----HHHHHHHHhcccCCcEEEEE
Q psy10573 125 HGSTRVIQSCWTK----EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 125 ~~~~D~i~~~~~~----~~~~~~~~~~L~~gG~l~~~ 157 (206)
++||+|+.+... ..+++++.+.|+|||++++.
T Consensus 142 -~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 -EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 789999976443 34689999999999999986
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=107.13 Aligned_cols=106 Identities=23% Similarity=0.216 Sum_probs=81.8
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+...+.++.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++... + ++.+|. ..
T Consensus 43 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~---------~--~~~~d~-~~ 107 (260)
T 2avn_A 43 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK---------N--VVEAKA-ED 107 (260)
T ss_dssp HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS---------C--EEECCT-TS
T ss_pred HHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcCC---------C--EEECcH-HH
Confidence 334444444457899999999999999999875 34999999999999999987531 2 677773 33
Q ss_pred cccCCCCCCeeEEEecCChH-------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKE-------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~-------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++ ++++||+|++...+. .+++++.++|+|||.+++.+++.
T Consensus 108 ~~~--~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 108 LPF--PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CCS--CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CCC--CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 445 788999999976543 35688999999999999987763
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=109.19 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=94.9
Q ss_pred ccccccccccCccccCcHH---HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 17 PYRIKSRQIGYGADISSPH---IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 17 ~y~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
.|+........+..++.|. +...+.+.+. ..++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|++
T Consensus 89 ~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~ 164 (284)
T 1nv8_A 89 EFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARK 164 (284)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHH
T ss_pred EECCeEEEeCCCceecChhHHHHHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHH
Confidence 3444444444444555543 3333444432 236689999999999999999887 56799999999999999999
Q ss_pred hhhccCccccCCCceEEEEcccccccccCCCCCCe---eEEEecCChH-------------------------HHHHHHH
Q psy10573 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST---RVIQSCWTKE-------------------------EYNSWLL 145 (206)
Q Consensus 94 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~---D~i~~~~~~~-------------------------~~~~~~~ 145 (206)
++...+. ..+++++.+|+.+. + + ++| |+|+++++.. .+++++.
T Consensus 165 n~~~~~l----~~~v~~~~~D~~~~--~--~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~ 235 (284)
T 1nv8_A 165 NAERHGV----SDRFFVRKGEFLEP--F--K-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFF 235 (284)
T ss_dssp HHHHTTC----TTSEEEEESSTTGG--G--G-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH
T ss_pred HHHHcCC----CCceEEEECcchhh--c--c-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHH
Confidence 9987332 13599999995432 2 2 467 9999985431 4668888
Q ss_pred -hcccCCcEEEEEecCCC
Q psy10573 146 -DQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 146 -~~L~~gG~l~~~~~~~~ 162 (206)
+.|+|||.+++.+....
T Consensus 236 ~~~l~pgG~l~~e~~~~q 253 (284)
T 1nv8_A 236 GRYDTSGKIVLMEIGEDQ 253 (284)
T ss_dssp HHCCCTTCEEEEECCTTC
T ss_pred HhcCCCCCEEEEEECchH
Confidence 99999999998766543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=104.22 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=80.1
Q ss_pred hhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCC
Q psy10573 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTN 123 (206)
Q Consensus 44 l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 123 (206)
+...+.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++ ++.++.+|... .+
T Consensus 37 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~-~~--- 98 (211)
T 3e23_A 37 FLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQ-LD--- 98 (211)
T ss_dssp HHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGG-CC---
T ss_pred HHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-----------CCceEEeeecc-CC---
Confidence 3334678899999999999999999875 349999999999999999876 24556667322 22
Q ss_pred CCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 124 PHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++++||+|++...++ .+++++.++|+|||.+++..+...
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 467899999988764 366899999999999999977654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-13 Score=103.92 Aligned_cols=118 Identities=23% Similarity=0.271 Sum_probs=92.9
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|.....+...+. +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+. ..+++++
T Consensus 75 ~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~ 145 (248)
T 2yvl_A 75 IYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNL----GKNVKFF 145 (248)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTC----CTTEEEE
T ss_pred ccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC----CCcEEEE
Confidence 34555566666654 678899999999999999999887 34999999999999999999876321 1578899
Q ss_pred EcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+|..+. .. ++++||+|+++.+-. ..++.+.++|+|||++++..+..
T Consensus 146 ~~d~~~~-~~--~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 146 NVDFKDA-EV--PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp CSCTTTS-CC--CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred EcChhhc-cc--CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 8884331 11 456789999987654 68899999999999999998864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=110.80 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. .. +|+++|+++.+++.+++++..++.. .+++++.+|..+. . .+++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~~~----~~v~~~~~D~~~~-~---~~~~ 192 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDF-P---GENI 192 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTC-C---CCSC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEECCHHHh-c---ccCC
Confidence 5789999999999999999999875 33 7999999999999999999874431 3589999994321 1 2668
Q ss_pred eeEEEecCChH--HHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKE--EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~--~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+++++.. .+++.+.++|+|||++++.....
T Consensus 193 fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 193 ADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp EEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccEEEECCchhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 89999987753 57889999999999999987763
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=105.42 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+.+.+.....++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ .++.++.+|
T Consensus 22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~d 92 (246)
T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcC------CCeEEEecc
Confidence 34555666665433478899999999999999998753 489999999999999999886522 268899988
Q ss_pred cccccccCCCCCCeeEEEecC-ChHH---------HHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCW-TKEE---------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~-~~~~---------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.. ..++ + ++||+|++.. .+++ +++++.++|+|||.+++.+++.
T Consensus 93 ~~-~~~~--~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 93 IS-NLNI--N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GG-GCCC--S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cc-cCCc--c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 43 3344 4 7899999987 5533 5688899999999999977653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=105.86 Aligned_cols=108 Identities=27% Similarity=0.336 Sum_probs=83.2
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 119 (206)
+.+.+...+.++.+|||+|||+|.++..+++. .+++++|+++.+++.+++++...+ .+++++.+|.. ..
T Consensus 23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~-~~ 91 (243)
T 3d2l_A 23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMR-EL 91 (243)
T ss_dssp HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGG-GC
T ss_pred HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChh-hc
Confidence 33344444667899999999999999988765 499999999999999999886522 46889999843 23
Q ss_pred ccCCCCCCeeEEEecC-ChH---------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 120 LLTNPHGSTRVIQSCW-TKE---------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~-~~~---------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++ + ++||+|++.. .++ .+++++.++|+|||++++.+++.
T Consensus 92 ~~--~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 92 EL--P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CC--S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CC--C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 33 3 7889999865 332 35688999999999999977653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-15 Score=114.78 Aligned_cols=122 Identities=16% Similarity=0.039 Sum_probs=82.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc--------------
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-------------- 103 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-------------- 103 (206)
..+.+.+.....++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++........
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~ 120 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCC
Confidence 33444443234577899999999998877655432 12799999999999999987754210000
Q ss_pred ----------CCCceE-EEEcccccccccC-CCCCCeeEEEecCChHH----------HHHHHHhcccCCcEEEEEecCC
Q psy10573 104 ----------DQGRVQ-FVAYFWLRHLLLT-NPHGSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 104 ----------~~~~i~-~~~~d~~~~~~~~-~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++. ++.+|..+..++. ...++||+|++...+++ +++++.++|||||.|+++....
T Consensus 121 ~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred CcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 001243 7888854433331 13568999999887764 4578889999999999986543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=106.31 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=85.6
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
+.+...+.++.+|+|+|||+|.++..+++.. +..+|+++|+++.+++.|++++..++.+ .+++++.+|..+.. .
T Consensus 13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~----~~I~v~~gD~l~~~-~ 86 (244)
T 3gnl_A 13 EKVASYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLT----EQIDVRKGNGLAVI-E 86 (244)
T ss_dssp HHHHTTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGC-C
T ss_pred HHHHHhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEecchhhcc-C
Confidence 3445567889999999999999999998764 6668999999999999999999884432 46999999943221 1
Q ss_pred CCCCCCeeEEEecCC----hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWT----KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~----~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++..||+|++... ...+++...+.|+++++++++...
T Consensus 87 --~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 87 --KKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp --GGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred --ccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 2224798876443 456778888899999999988654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=106.62 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+. ..++.++.+|..+ .++ .++++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~~-~~~~~ 133 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYG-RHM-DLGKE 133 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTT-SCC-CCSSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCC----CccEEEEECCccc-ccc-CCCCC
Confidence 578899999999999999988765 234999999999999999999876321 1468999999432 232 14678
Q ss_pred eeEEEecCChH----------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKE----------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~----------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|++...++ .+++++.++|+|||++++.+++.
T Consensus 134 fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 134 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99999987663 36688999999999999998764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=118.83 Aligned_cols=112 Identities=19% Similarity=0.077 Sum_probs=89.5
Q ss_pred HHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 41 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
...+. ..++.+|||+|||+|..+..++...+..++|+++|+++.+++.+++++... +.. +.++.+|......
T Consensus 94 a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~-----G~~-v~~~~~Da~~l~~ 165 (464)
T 3m6w_A 94 GVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW-----GAP-LAVTQAPPRALAE 165 (464)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-----CCC-CEEECSCHHHHHH
T ss_pred HHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCe-EEEEECCHHHhhh
Confidence 34444 678999999999999999999988755579999999999999999999873 334 8888888433322
Q ss_pred cCCCCCCeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 121 LTNPHGSTRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+ .+++||+|++++++ ..+++.+.++|+|||+++.++++..
T Consensus 166 ~--~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 166 A--FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp H--HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred h--ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 2 35678999987664 3467888999999999999887654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=107.51 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=84.1
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ . +++++.+|..+
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~ 178 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKEN-----L-NISTALYDINA 178 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-----C-CEEEEECCGGG
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEecccc
Confidence 34445554 3478999999999999999998763 499999999999999999987632 2 78999999432
Q ss_pred ccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+ .+++||+|+++..++ .+++++.++|+|||.+++...
T Consensus 179 -~~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 179 -AN---IQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp -CC---CCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -cc---ccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 267889999987654 477899999999999877654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=108.67 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..+ ++++++|+|+.+++.+++++...+. ..+++++.+|..+ + + ++
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~---~--~-~~ 155 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWED---F--A-EP 155 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGG---C--C-CC
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChHH---C--C-CC
Confidence 46788999999999999999988753 4999999999999999999876332 2468999988432 2 3 67
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...++ .+++++.++|+|||++++..+...
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 89999986543 467899999999999999877654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-14 Score=113.87 Aligned_cols=101 Identities=24% Similarity=0.232 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++..++ .+++++.+|..+ ... ++++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~------~~v~~~~~D~~~-~~~--~~~~f 299 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANA------LKAQALHSDVDE-ALT--EEARF 299 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTTT-TSC--TTCCE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC------CCeEEEEcchhh-ccc--cCCCe
Confidence 467899999999999999998753 499999999999999999988733 237899998432 222 45789
Q ss_pred eEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++++++ .+++.+.+.|+|||++++++...
T Consensus 300 D~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 300 DIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp EEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred EEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 9999987654 36788999999999999987654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=106.87 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++... .....+...+
T Consensus 32 ~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~ 100 (261)
T 3iv6_A 32 SDRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR------CVTIDLLDIT 100 (261)
T ss_dssp CHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTT
T ss_pred HHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc------cceeeeeecc
Confidence 45566666665 6788999999999999999998753 49999999999999999987651 0112222111
Q ss_pred cccccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. ..... .+++||+|+++..+++ .+.++.++| |||++++++..+.
T Consensus 101 ~-~~~~~--~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 101 A-EIPKE--LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp S-CCCGG--GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred c-ccccc--cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 1 00011 2467899999887643 567888899 9999999876543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=115.57 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=85.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|..+..++...++.+.|+++|+++.+++.+++++... +..++.++.+|....... .+++||
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~-----g~~nv~~~~~D~~~~~~~--~~~~fD 189 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC-----GISNVALTHFDGRVFGAA--VPEMFD 189 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH-----TCCSEEEECCCSTTHHHH--STTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEeCCHHHhhhh--ccccCC
Confidence 8999999999999999999988755679999999999999999999873 345799999984332222 356789
Q ss_pred EEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 130 VIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|++++++ ..+++.+.++|+|||+++.++++.
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 99997553 135678889999999999988764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=113.28 Aligned_cols=121 Identities=20% Similarity=0.134 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc--CccccC--CCce
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG--NSELLD--QGRV 108 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~~~~~--~~~i 108 (206)
.+.....+++.+. +.++.+|||||||+|..+..++...+ ..+++|||+++.+++.|+++.... .....+ ..++
T Consensus 158 ~~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rV 234 (438)
T 3uwp_A 158 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 234 (438)
T ss_dssp HHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEE
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 3556777777776 78999999999999999999987653 336999999999999998754310 000011 2579
Q ss_pred EEEEcccccccccCCCC--CCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 109 QFVAYFWLRHLLLTNPH--GSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~--~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+++.+|+.+ .++ ++ ..+|+|+++..+ ...+.++.+.|+|||+|++.-.
T Consensus 235 efi~GD~~~-lp~--~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 235 TLERGDFLS-EEW--RERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp EEEECCTTS-HHH--HHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred EEEECcccC-Ccc--ccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 999999432 233 22 356999987653 3456788999999999988733
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=103.69 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
...+.+. ..++.+|||+|||+|.++..+++.. |.++++++|+|+.+++.+.+....... ....++++++.+|. ..
T Consensus 18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~ 92 (218)
T 3mq2_A 18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA-KGGLPNLLYLWATA-ER 92 (218)
T ss_dssp HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG-GTCCTTEEEEECCS-TT
T ss_pred HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh-hcCCCceEEEecch-hh
Confidence 3445554 6788999999999999999999875 677999999999988864333322110 02345899999994 33
Q ss_pred cccCCCCCCeeEEEecCC---h--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 119 LLLTNPHGSTRVIQSCWT---K--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~---~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.++ ++++ |.++.... . ..+++++.++|+|||.+++...
T Consensus 93 l~~--~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 93 LPP--LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp CCS--CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCC--CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 555 5666 76664332 1 3467899999999999998654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=101.29 Aligned_cols=110 Identities=13% Similarity=-0.026 Sum_probs=84.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC-ceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-RVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~-~i~~~~~d~ 115 (206)
...+...+..++.+..+|||+|||+|.++..++... |..+++++|+|+.+++.+++++...+ .. ++++ .|.
T Consensus 36 ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g-----~~~~v~~--~d~ 107 (200)
T 3fzg_A 36 LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLK-----TTIKYRF--LNK 107 (200)
T ss_dssp HHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEE--ECC
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC-----CCccEEE--ecc
Confidence 344445544556788999999999999999997655 66799999999999999999998733 23 5666 552
Q ss_pred ccccccCCCCCCeeEEEecCChHHHH------HHHHhcccCCcEEEEEec
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEYN------SWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~~------~~~~~~L~~gG~l~~~~~ 159 (206)
... . +.+.||+|++...+|.+- .++.+.|+|||++| +.+
T Consensus 108 ~~~--~--~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfI-Sfp 152 (200)
T 3fzg_A 108 ESD--V--YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVI-SFP 152 (200)
T ss_dssp HHH--H--TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEE-EEE
T ss_pred ccc--C--CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEE-EeC
Confidence 221 3 677789999999998753 37899999999765 444
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=108.14 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
......+++.+. .++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ...+++++.+
T Consensus 69 ~~~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~ 140 (299)
T 3g2m_A 69 TSEAREFATRTG---PVSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPAD--VRDRCTLVQG 140 (299)
T ss_dssp HHHHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHH--HHTTEEEEEC
T ss_pred cHHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccc--cccceEEEeC
Confidence 345555656553 34459999999999999999875 348999999999999999998762210 0047999999
Q ss_pred ccccccccCCCCCCeeEEEecCC---------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWT---------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~---------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|..+ .++ +++||+|++... ...+++++.++|+|||++++.+++..
T Consensus 141 d~~~-~~~---~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 141 DMSA-FAL---DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp BTTB-CCC---SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred chhc-CCc---CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 9432 332 678998886422 24577899999999999999988765
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=110.13 Aligned_cols=110 Identities=18% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++..... ....++++++.+|..+... ..++++
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~-gl~~~rv~~~~~D~~~~l~-~~~~~~ 194 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLK-NAAEGS 194 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHH-TSCTTC
T ss_pred CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEECCHHHHHH-hccCCC
Confidence 3567899999999999999998764 456999999999999999998864100 0123689999999443322 114678
Q ss_pred eeEEEecCC----------hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWT----------KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~----------~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+++.. ...+++.+.++|+|||++++...+
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 899999764 245789999999999999997544
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=108.99 Aligned_cols=103 Identities=25% Similarity=0.176 Sum_probs=83.4
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCCCeeE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~ 130 (206)
.+|||||||+|.++..+++.. +..+++++|+++.+++.+++++.. ...++++++.+|..+.. .+ ++++||+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~-----~~~~rv~v~~~Da~~~l~~~--~~~~fDv 162 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDI-----PRAPRVKIRVDDARMVAESF--TPASRDV 162 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCC-----CCTTTEEEEESCHHHHHHTC--CTTCEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccc-----cCCCceEEEECcHHHHHhhc--cCCCCCE
Confidence 499999999999999999866 666999999999999999999865 23468999999944332 23 5678999
Q ss_pred EEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 131 IQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 131 i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+++... ..+++.+.++|+|||++++...+..
T Consensus 163 Ii~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp EEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 9996432 3578999999999999999887543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=108.29 Aligned_cols=109 Identities=18% Similarity=0.095 Sum_probs=83.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. ....++++++.+|....... .+++|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~--~~~~f 164 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRK--FKNEF 164 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGG--CSSCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc-ccCCCceEEEECcHHHHHhh--CCCCc
Confidence 456899999999999999998764 456999999999999999998753100 01236899999995443333 45678
Q ss_pred eEEEecCCh-----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++... ..+++.+.+.|+|||++++.+.++
T Consensus 165 D~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 208 (296)
T 1inl_A 165 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 208 (296)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred eEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 999987643 356789999999999999987654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=104.87 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=79.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|.++..+++ +..+++++|+++.+++.+++++...+ ...+++++.+|+.+ .+ ++++||
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~-~~---~~~~fD 134 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFT-WR---PTELFD 134 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTT-CC---CSSCEE
T ss_pred CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhc-CC---CCCCee
Confidence 445999999999999998875 45699999999999999999886521 12479999999433 11 355889
Q ss_pred EEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 130 VIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|++...++ .+++++.++|+|||.+++..+..
T Consensus 135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 999876643 46789999999999999887654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=104.28 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=90.1
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
...+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ..++++
T Consensus 52 ~~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~i~~ 125 (229)
T 2avd_A 52 MMTCEQAQLLANLAR--LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDL 125 (229)
T ss_dssp SCCHHHHHHHHHHHH--HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEE
T ss_pred ccCHHHHHHHHHHHH--hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCeEEE
Confidence 344555444444433 46788999999999999999998764467999999999999999999876332 257999
Q ss_pred EEcccccccc-cCCC--CCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEe
Q psy10573 111 VAYFWLRHLL-LTNP--HGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 111 ~~~d~~~~~~-~~~~--~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|..+..+ +.-. .++||+|+++... ..+++.+.++|+|||++++..
T Consensus 126 ~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 126 RLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998432211 1001 1678999998764 357789999999999998853
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=105.10 Aligned_cols=103 Identities=18% Similarity=0.075 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCC-HHHHHHH---HHhhhccCccccCCCceEEEEcccccccccCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV-MELAESS---IKNIDKGNSELLDQGRVQFVAYFWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s-~~~~~~a---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 123 (206)
..++.+|||+|||+|.++..+++.. +..+|+|+|+| +.+++.| +++... .+.+++.++.+|.... +..
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~-----~~~~~v~~~~~d~~~l-~~~- 93 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSK-----GGLSNVVFVIAAAESL-PFE- 93 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGG-----TCCSSEEEECCBTTBC-CGG-
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHH-----cCCCCeEEEEcCHHHh-hhh-
Confidence 4678899999999999999998654 67799999999 6666666 666654 2345799999994322 210
Q ss_pred CCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|.+.++.++. .+++++.++|||||++++.+
T Consensus 94 ~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 94 LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 126678888776532 35788999999999999844
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=103.21 Aligned_cols=109 Identities=22% Similarity=0.271 Sum_probs=82.8
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++ .++.++..|..
T Consensus 41 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~ 104 (227)
T 3e8s_A 41 DQAILLAIL--GRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-----------GAGEVHLASYA 104 (227)
T ss_dssp HHHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-----------CSSCEEECCHH
T ss_pred cHHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-----------cccccchhhHH
Confidence 344555554 456799999999999999999875 34999999999999999876 24566777732
Q ss_pred cc--cccCCCCCCeeEEEecCChH-----HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 117 RH--LLLTNPHGSTRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 117 ~~--~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+. .++ .++++||+|++...++ .+++++.++|+|||++++..++..
T Consensus 105 ~~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 156 (227)
T 3e8s_A 105 QLAEAKV-PVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPW 156 (227)
T ss_dssp HHHTTCS-CCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred hhccccc-ccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 22 122 1345699999987654 688999999999999999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-13 Score=102.60 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=78.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+ .+++++.+|..+ .++ +++|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~-~~~---~~~f 106 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLE-IAF---KNEF 106 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGG-CCC---CSCE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhh-ccc---CCCc
Confidence 56789999999999999999875 3499999999999999999887522 368999999432 333 3678
Q ss_pred eEEEecCC---------hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWT---------KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~---------~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++... ...+++++.++|+|||.+++..++
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 99997532 234678899999999999987765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=106.80 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=84.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...... ...++++++.+|....... .+++|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~--~~~~f 149 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAK--SENQY 149 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHT--CCSCE
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhh--CCCCe
Confidence 457899999999999999998753 4469999999999999999988541000 1246899999995443333 45778
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++... ..+++.+.+.|+|||++++.+.++
T Consensus 150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~ 192 (275)
T 1iy9_A 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (275)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 999998654 357899999999999999987653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=114.96 Aligned_cols=108 Identities=18% Similarity=0.068 Sum_probs=88.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..++...+..++|+++|+++.+++.+++++... +..++.++.+|....... .+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~-----g~~nv~v~~~Da~~l~~~--~~~~ 175 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW-----GVSNAIVTNHAPAELVPH--FSGF 175 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH-----TCSSEEEECCCHHHHHHH--HTTC
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEeCCHHHhhhh--cccc
Confidence 678999999999999999999988755679999999999999999999873 345799999884332222 3567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++++++ ..+++.+.++|+|||+++.++++..
T Consensus 176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 8999998773 1467888999999999999887653
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-13 Score=99.53 Aligned_cols=99 Identities=21% Similarity=0.191 Sum_probs=80.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++ +++.++.+|... .++ ++++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~----------~~~~~~~~d~~~-~~~--~~~~ 107 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF----------PEARWVVGDLSV-DQI--SETD 107 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTT-SCC--CCCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC----------CCCcEEEccccc-CCC--CCCc
Confidence 578899999999999999999875 349999999999999999875 257888888432 344 6788
Q ss_pred eeEEEec-CCh--------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSC-WTK--------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~-~~~--------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++. ..+ ..+++.+.++|+|||.+++..+...
T Consensus 108 ~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~ 151 (195)
T 3cgg_A 108 FDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR 151 (195)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9999997 333 3467889999999999999877654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-13 Score=112.23 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
..++.+|||+|||+|..+..++...+..++++++|+++..++.+++++... +..++.++.+|...... + +++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~-----g~~~v~~~~~D~~~~~~~~--~~~ 329 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM-----GIKIVKPLVKDARKAPEII--GEE 329 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT-----TCCSEEEECSCTTCCSSSS--CSS
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-----CCCcEEEEEcChhhcchhh--ccC
Confidence 678899999999999999999988744479999999999999999998873 34579999998433221 3 557
Q ss_pred CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|++++++ ..+++.+.+.|+|||++++++++..
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 89999986543 3467889999999999999887654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=108.08 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++..... ....++++++.+|..+..+. .+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~rv~v~~~Da~~~l~~--~~~~f 169 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQ--NQDAF 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHT--CSSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhc-ccCCCcEEEEECcHHHHHhh--CCCCc
Confidence 566899999999999999998764 456999999999999999998764100 01236899999994433333 46788
Q ss_pred eEEEecCChH----------HHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTKE----------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~~----------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++...+ .+++.+.++|+|||++++...+
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9999976642 3678999999999999988754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=101.78 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=82.8
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+.....++.+|||+|||+|.++..+++... +++++|+++.+++.+++++ +++.++.+|..
T Consensus 27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~ 93 (239)
T 3bxo_A 27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL----------PDATLHQGDMR 93 (239)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC----------TTCEEEECCTT
T ss_pred HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC----------CCCEEEECCHH
Confidence 3445555554457789999999999999999998763 8999999999999998874 35888888843
Q ss_pred cccccCCCCCCeeEEEecC-Ch---------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCW-TK---------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~-~~---------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+ .++ +++||+|++.. .+ ..+++++.++|+|||.+++..+..
T Consensus 94 ~-~~~---~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 94 D-FRL---GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp T-CCC---SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred H-ccc---CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 2 222 56789999533 32 246788999999999999986544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-13 Score=108.97 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=78.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. ..+++++|+++ +++.|++++..++. ..+++++.+|.. ..++ ++++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~-~~~~--~~~~ 131 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNKL----EDTITLIKGKIE-EVHL--PVEK 131 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTT-TSCC--SCSC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcCC----CCcEEEEEeeHH-HhcC--CCCc
Confidence 4678999999999999999988752 34899999997 99999998876332 257999999943 3344 6788
Q ss_pred eeEEEecCC---------hHHHHHHHHhcccCCcEEE
Q psy10573 128 TRVIQSCWT---------KEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 128 ~D~i~~~~~---------~~~~~~~~~~~L~~gG~l~ 155 (206)
||+|+++.. ...++..+.+.|+|||+++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999998762 2346788899999999987
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=102.54 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=82.1
Q ss_pred HHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--
Q psy10573 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-- 118 (206)
Q Consensus 41 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-- 118 (206)
+..+...+.++.+|||+|||+|.++..+++.. + +++++|+|+.+++.+++++.. .+++++.+|..+.
T Consensus 47 ~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~-~--~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~ 115 (245)
T 3ggd_A 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF-P--RVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLVPEQ 115 (245)
T ss_dssp HHHHTTTSCTTSCEEEETCTTSHHHHHHHHHS-S--CEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTCHHH
T ss_pred HHHHhhccCCCCeEEEEcCCCCHHHHHHHHhC-C--CEEEEECCHHHHHHHHHhCcc--------cCceEEECccccccc
Confidence 33343446788999999999999999999876 3 899999999999999988743 4799999993321
Q ss_pred -cccCCCC-CCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 -LLLTNPH-GSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 -~~~~~~~-~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..+ .. ..||+|++...+ ..+++++.++|+|||++++.....
T Consensus 116 ~~~~--~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 116 AAQI--HSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHHH--HHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred cccc--ccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 111 11 125999987654 347789999999999988876654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=107.86 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=84.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++..... ....++++++.+|..+.... .+++|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~-~~~~~~v~~~~~D~~~~l~~--~~~~f 190 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLEN--VTNTY 190 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHH--CCSCE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEEccHHHHHhh--cCCCc
Confidence 456899999999999999998754 456999999999999999998864210 01236899999995443333 35678
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++... ..+++.+.+.|+|||++++...+.
T Consensus 191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 999987631 467899999999999999987654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=108.53 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=83.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...... ...++++++.+|..+.... .+++
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~--~~~~ 181 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKN--HKNE 181 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHH--CTTC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHh--cCCC
Confidence 3456899999999999999998754 5569999999999999999988642100 1246899999995443333 4677
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+++... ..+++.+.++|+|||++++...+
T Consensus 182 fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 182 FDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred ceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 8999987642 35678999999999999998644
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=105.75 Aligned_cols=109 Identities=18% Similarity=0.083 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc------------ccC------------
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE------------LLD------------ 104 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~------------~~~------------ 104 (206)
.++.+|||+|||+|.++..++... . .+++++|+|+.+++.+++++...... ..+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 567899999999999998887643 2 48999999999999999887652100 000
Q ss_pred CCce-EEEEcccccccccCCCC---CCeeEEEecCChH----H------HHHHHHhcccCCcEEEEEecCC
Q psy10573 105 QGRV-QFVAYFWLRHLLLTNPH---GSTRVIQSCWTKE----E------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 105 ~~~i-~~~~~d~~~~~~~~~~~---~~~D~i~~~~~~~----~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..++ .++.+|..+..++ ++ ++||+|++...++ . +++++.++|+|||++++.....
T Consensus 133 ~~~v~~~~~~d~~~~~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPL--GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp HHHEEEEEECCTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhheeEEEeeeccCCCC--CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 0127 8888885443333 34 8899999988876 2 5688899999999999987544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=106.53 Aligned_cols=107 Identities=16% Similarity=0.044 Sum_probs=75.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh---CCCceE--EEEeCCHHHHHHHHHhhhccCccccCCCceE--EEEccccccc--
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRV--YGVEHVMELAESSIKNIDKGNSELLDQGRVQ--FVAYFWLRHL-- 119 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v--~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~--~~~~d~~~~~-- 119 (206)
.++.+|||+|||+|..+..++..+ .+...+ +++|+|+.+++.+++++.... +..++. +..++..+..
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS----NLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS----SCTTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc----CCCcceEEEEecchhhhhhh
Confidence 456799999999998765443221 144544 999999999999999876411 123444 4444422111
Q ss_pred ---ccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 120 ---LLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 120 ---~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++ ++++||+|++...+++ .++++.++|||||++++...+.
T Consensus 127 ~~~~~--~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 127 MLEKK--ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHTTT--CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hcccc--CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 24 6788999999988764 6789999999999999986554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-13 Score=105.19 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=84.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+.. ...++++++.+|..+.... .+++|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~--~~~~f 152 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLEN--VTNTY 152 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHH--CCSCE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccc-cCCCcEEEEECChHHHHHh--CCCCc
Confidence 466899999999999999998754 4569999999999999999988642110 1246899999994433332 35678
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++... ..+++.+.+.|+|||++++...+
T Consensus 153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999996531 46779999999999999998664
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-13 Score=108.91 Aligned_cols=108 Identities=16% Similarity=0.029 Sum_probs=82.4
Q ss_pred hhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCC
Q psy10573 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTN 123 (206)
Q Consensus 44 l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 123 (206)
+.....++.+|||+|||+|.++..++... +.|+++|+|+.+++.+++++..++. . ..+..+|..+....
T Consensus 208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~~n~~~ng~-----~-~~~~~~D~~~~l~~-- 276 (393)
T 4dmg_A 208 FEAMVRPGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLDQAALRLGL-----R-VDIRHGEALPTLRG-- 276 (393)
T ss_dssp HHTTCCTTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTC-----C-CEEEESCHHHHHHT--
T ss_pred HHHHhcCCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHhCC-----C-CcEEEccHHHHHHH--
Confidence 33335679999999999999999998753 3699999999999999999987442 2 24668884433222
Q ss_pred CCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 124 PHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 124 ~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..+.||+|+++++. ..++..+.++|+|||++++++.+..
T Consensus 277 ~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 277 LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 13348999999875 3467888999999999997777654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-13 Score=106.60 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=85.4
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+.. ..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++..++.+ ..+++++.+|+.
T Consensus 141 ~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~gl~---~~~v~~i~~D~~ 213 (332)
T 2igt_A 141 WEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAM 213 (332)
T ss_dssp HHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHH
T ss_pred HHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECcHH
Confidence 3345554431 3467899999999999999998743 39999999999999999999874321 124899999943
Q ss_pred cccc-cCCCCCCeeEEEecCCh----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 117 RHLL-LTNPHGSTRVIQSCWTK----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 117 ~~~~-~~~~~~~~D~i~~~~~~----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+... .....++||+|+++++. ..+++.+.++|+|||++++...+..
T Consensus 214 ~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 214 KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred HHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 3221 00014567999998762 3567888999999999777765543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=104.74 Aligned_cols=110 Identities=19% Similarity=0.101 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...... ...++++++.+|..+.. ...++++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~~-~~~~~~~f 170 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAFV-RQTPDNTY 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHH-HSSCTTCE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHH-HhccCCce
Confidence 567899999999999999998754 4569999999999999999987421000 12468999999943321 11146788
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++... ..+++.+.++|+|||++++...+.
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 213 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI 213 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 999997653 356789999999999999987654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=105.90 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=80.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc------------cc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE------------LL 103 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~------------~~ 103 (206)
....+.+.+.....++.+|||+|||+|.....++.. ...+|+|+|+|+.+++.+++++...... ..
T Consensus 57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~ 134 (289)
T 2g72_A 57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 134 (289)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhc
Confidence 345555555432346789999999999954433332 2349999999999999998866431000 00
Q ss_pred C-------------CCceEEEEccccccccc---CCCCCCeeEEEecCChHH----------HHHHHHhcccCCcEEEEE
Q psy10573 104 D-------------QGRVQFVAYFWLRHLLL---TNPHGSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 104 ~-------------~~~i~~~~~d~~~~~~~---~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~ 157 (206)
+ ...+.++.+|.....++ .+++++||+|++...+++ +++++.++|||||+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 135 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 00145666774332332 125678999999988765 357889999999999987
Q ss_pred e
Q psy10573 158 V 158 (206)
Q Consensus 158 ~ 158 (206)
.
T Consensus 215 ~ 215 (289)
T 2g72_A 215 G 215 (289)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=98.07 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=78.9
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+.....++.+|||+|||+|.++..+++.. +++++|+|+.+++. . .+++++.+|.
T Consensus 9 ~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~------~--------~~~~~~~~d~ 70 (170)
T 3q87_B 9 DTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES------H--------RGGNLVRADL 70 (170)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT------C--------SSSCEEECST
T ss_pred cHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc------c--------cCCeEEECCh
Confidence 3444555554222567899999999999999988643 99999999999887 1 3688999994
Q ss_pred ccccccCCCCCCeeEEEecCChH---------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE---------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ ++ ++++||+|++++++. .+++++.+.+ |||++++......
T Consensus 71 ~~--~~--~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~ 127 (170)
T 3q87_B 71 LC--SI--NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN 127 (170)
T ss_dssp TT--TB--CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred hh--hc--ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence 33 34 557889999988764 3667888888 9999999876543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=107.50 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=83.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+......++++++.+|..+..+. .+++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCc
Confidence 566899999999999999998764 456999999999999999998753100001136899999995443333 46788
Q ss_pred eEEEecCCh-------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK-------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~-------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++... ..+++.+.++|+|||++++...+
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 999987542 35678999999999999988654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-13 Score=104.34 Aligned_cols=106 Identities=22% Similarity=0.160 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc-------CCCceEEEEcccccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-------DQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-------~~~~i~~~~~d~~~~~~ 120 (206)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++ ..... . ..++++++.+|..+...
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D~~~~l~ 148 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGDGFEFIK 148 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECchHHHhc
Confidence 356789999999999999999876 4469999999999999999988 42100 1 24689999999433221
Q ss_pred cCCCCCCeeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 121 LTNPHGSTRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. +++||+|+++... ..+++.+.+.|+|||++++...+
T Consensus 149 ~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 149 N---NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp H---CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c---cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1 4567999998762 45778999999999999998654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-12 Score=104.23 Aligned_cols=117 Identities=21% Similarity=0.137 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.+.+.++... ..++.+|||+|||+|.++..++... +.++++|+|+++.+++.|++++...+.+ .+++++
T Consensus 202 l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~----~~i~~~ 273 (373)
T 3tm4_A 202 LKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVL----DKIKFI 273 (373)
T ss_dssp CCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCG----GGCEEE
T ss_pred ccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCC----CceEEE
Confidence 3455666666555 5788999999999999999998765 4558999999999999999999874321 479999
Q ss_pred EcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+|.. ..++ ++++||+|++++++ ..+++.+.++| +|.+++.+.+.
T Consensus 274 ~~D~~-~~~~--~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~ 332 (373)
T 3tm4_A 274 QGDAT-QLSQ--YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK 332 (373)
T ss_dssp ECCGG-GGGG--TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred ECChh-hCCc--ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence 99943 3445 66889999998772 23556777777 55565555543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.8e-13 Score=106.84 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..++. ..+++++.+|. ...++ ++++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~~----~~~v~~~~~d~-~~~~~--~~~~ 133 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANKL----DHVVTIIKGKV-EEVEL--PVEK 133 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCT-TTCCC--SSSC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcCC----CCcEEEEECcH-HHccC--CCCc
Confidence 457899999999999999999876 334999999995 99999998877432 24599999994 33355 7789
Q ss_pred eeEEEecCC---------hHHHHHHHHhcccCCcEEEE
Q psy10573 128 TRVIQSCWT---------KEEYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 128 ~D~i~~~~~---------~~~~~~~~~~~L~~gG~l~~ 156 (206)
||+|+++.. ...++..+.++|+|||+++.
T Consensus 134 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 134 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 999998653 34577888999999999873
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=101.28 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=77.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhcc---Ccccc-----------C----------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKG---NSELL-----------D---------- 104 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~-----------~---------- 104 (206)
++.+|||+|||+|.++..++... .+..+++++|+|+.+++.|++++... +.... .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 56799999999999999998762 14569999999999999999887652 11000 0
Q ss_pred CCceE-------------EEEcccccccccC--CCCCCeeEEEecCChH---------------HHHHHHHhcccCCcEE
Q psy10573 105 QGRVQ-------------FVAYFWLRHLLLT--NPHGSTRVIQSCWTKE---------------EYNSWLLDQLVPGGRM 154 (206)
Q Consensus 105 ~~~i~-------------~~~~d~~~~~~~~--~~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~gG~l 154 (206)
..+++ ++.+|+.+..... ...++||+|++++++. .+++++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 00045 8888843321100 0233789999986532 5678899999999999
Q ss_pred EEEecC
Q psy10573 155 VMPVGE 160 (206)
Q Consensus 155 ~~~~~~ 160 (206)
+++...
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 984333
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=108.04 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=86.8
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++ ..++++.+|..
T Consensus 185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~~~~~d~~ 255 (343)
T 2pjd_A 185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANG------VEGEVFASNVF 255 (343)
T ss_dssp HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTT
T ss_pred HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC------CCCEEEEcccc
Confidence 455556553 3456799999999999999998875 66699999999999999999987633 13566777732
Q ss_pred cccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
. + .+++||+|+++++++ .+++++.++|+|||.+++.....
T Consensus 256 ~---~--~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 256 S---E--VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp T---T--CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred c---c--ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2 2 467889999987653 36788999999999999987654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-12 Score=99.78 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=80.4
Q ss_pred CCCeEEEEcccC---chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--------
Q psy10573 50 PGARILDIGSGS---GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-------- 118 (206)
Q Consensus 50 ~~~~vLDlG~G~---G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-------- 118 (206)
+..+|||||||+ |.++..+.+.. +..+|+++|+|+.+++.+++++.. ..+++++.+|..+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccch
Confidence 447999999999 98876666554 677999999999999999998753 25799999994321
Q ss_pred --cccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 --LLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 --~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..+ +.++||+|++...++ .+++++.++|+|||+|++.....
T Consensus 149 ~~~~~--d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 149 VRRMI--DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHC--CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hhccC--CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 113 445789999887654 36789999999999999987765
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=95.56 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-----c--
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-----L-- 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-- 120 (206)
+.++.+|||+|||+|.++..+++..++..+++++|+++ ++.. .+++++.+|..+.. +
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhcc
Confidence 57889999999999999999998865667999999998 5421 36888888843221 1
Q ss_pred cCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 121 LTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+ ++++||+|+++.++ ..+++.+.++|+|||.+++..+...
T Consensus 84 ~--~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 84 V--GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp H--TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred C--CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 4 67889999997653 3567889999999999999877655
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=105.33 Aligned_cols=103 Identities=14% Similarity=0.037 Sum_probs=82.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~ 127 (206)
.+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|..... ++ + ++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~--p-~~ 248 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSG----SERIHGHGANLLDRDVPF--P-TG 248 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTT----GGGEEEEECCCCSSSCCC--C-CC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCc----ccceEEEEccccccCCCC--C-CC
Confidence 456899999999999999999886 7779999999 9999999998876321 257999999954322 34 4 67
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++....
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 249 FDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred cCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 89999977654 3678999999999999887544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-13 Score=98.67 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-------
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL------- 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 119 (206)
+.++.+|||+|||+|.++..+++..++ .++++++|+++.. . .++++++.+|..+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-------~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-------IPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-------CTTCEEEECCTTTTSSCCC---
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-------CCCceEEEccccchhhhhhccc
Confidence 578899999999999999999988742 5799999999831 0 146788888843221
Q ss_pred -----------------ccCCCCCCeeEEEecCChH-----------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 120 -----------------LLTNPHGSTRVIQSCWTKE-----------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 120 -----------------~~~~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ ++++||+|+++..++ .+++.+.++|+|||.+++.++...
T Consensus 84 ~~i~~~~~~~~~~~~~~~~--~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEIL--QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp --------CHHHHHHHHHH--TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred cccccccchhhHHHHHhhc--CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 03 567899999975432 156778999999999999877654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=108.35 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=90.0
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+...+. ..++.+|||+|||+|..+..++... ++++++++|+++..++.+++++...+ . ++.++.+|.
T Consensus 234 ~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g-----~-~~~~~~~D~ 304 (429)
T 1sqg_A 234 SAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----M-KATVKQGDG 304 (429)
T ss_dssp HHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----C-CCEEEECCT
T ss_pred HHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcC-----C-CeEEEeCch
Confidence 3344445554 6788999999999999999999876 44799999999999999999988733 2 468888884
Q ss_pred ccccc-cCCCCCCeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLL-LTNPHGSTRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~-~~~~~~~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..... + ++++||+|++++++ ..+++.+.+.|+|||++++++++..
T Consensus 305 ~~~~~~~--~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 305 RYPSQWC--GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp TCTHHHH--TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred hhchhhc--ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 33221 3 56788999987653 2467889999999999999887654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=104.62 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=83.0
Q ss_pred CC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.+ +.+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|..+...+ .++.
T Consensus 177 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~~ 248 (352)
T 3mcz_A 177 FARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDL----GGRVEFFEKNLLDARNF--EGGA 248 (352)
T ss_dssp GTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC----GGGEEEEECCTTCGGGG--TTCC
T ss_pred cCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCC----CCceEEEeCCcccCccc--CCCC
Confidence 44 7899999999999999999877 6779999999 8899999988876322 24799999995443322 3556
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++....
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 89999987764 3678899999999999987543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-12 Score=103.42 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|.. .++ +. +
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l----~~~v~~~~~d~~--~~~--p~-~ 268 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGL----ADRCEILPGDFF--ETI--PD-G 268 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTT--TCC--CS-S
T ss_pred CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCc----CCceEEeccCCC--CCC--CC-C
Confidence 4567899999999999999999886 7779999999 9999999998876321 257999999954 333 44 7
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++....
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 89999987764 3778999999999999987554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=103.75 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=77.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++. ...+++++|++ .+++.+++++..++. ..+++++.+|. ...++ ++++
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i~~~~~d~-~~~~~--~~~~ 105 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGF----SDKITLLRGKL-EDVHL--PFPK 105 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTC----TTTEEEEESCT-TTSCC--SSSC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCC----CCCEEEEECch-hhccC--CCCc
Confidence 457889999999999999988875 23489999999 589999998876432 24699999994 33344 6688
Q ss_pred eeEEEecCC---------hHHHHHHHHhcccCCcEEE
Q psy10573 128 TRVIQSCWT---------KEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 128 ~D~i~~~~~---------~~~~~~~~~~~L~~gG~l~ 155 (206)
||+|++... ...++..+.+.|+|||+++
T Consensus 106 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999998743 2456788889999999997
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=102.21 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...+. ..+++++.+|..+ .++ +++ |
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~~--~~~-~ 233 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGV----ASRYHTIAGSAFE-VDY--GND-Y 233 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTC----GGGEEEEESCTTT-SCC--CSC-E
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCC----CcceEEEeccccc-CCC--CCC-C
Confidence 677899999999999999999886 66799999999 999999998875321 2469999999433 233 443 8
Q ss_pred eEEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|++...++ .+++++.++|+|||++++.....
T Consensus 234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 9999976654 36688999999999998876654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=107.02 Aligned_cols=105 Identities=20% Similarity=0.129 Sum_probs=83.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCCe
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~ 128 (206)
++.+|||+|||+|.++..++... .+|+++|+++.+++.+++++..++ ..+++++.+|..+..+ +.-.+++|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~-----~~~~~~~~~d~~~~~~~~~~~~~~f 280 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGERF 280 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEECCHHHHHHHHHhcCCCe
Confidence 78899999999999999998863 499999999999999999998743 3459999999433211 10025678
Q ss_pred eEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++++. ..++..+.+.|+|||++++++.+..
T Consensus 281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999998764 3467889999999999999988755
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=101.51 Aligned_cols=81 Identities=15% Similarity=-0.029 Sum_probs=63.2
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--cccCCC---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH--LLLTNP--- 124 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--- 124 (206)
++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++...+. ..+++++.+|..+. .++ +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~--~~~~ 137 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDAL--KEES 137 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTTS--TTCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCC----CccEEEEEcchhhhhhhhh--hccc
Confidence 56799999999999999988765 456999999999999999999887332 13599999984321 123 3
Q ss_pred CCCeeEEEecCCh
Q psy10573 125 HGSTRVIQSCWTK 137 (206)
Q Consensus 125 ~~~~D~i~~~~~~ 137 (206)
+++||+|++++++
T Consensus 138 ~~~fD~i~~npp~ 150 (254)
T 2h00_A 138 EIIYDFCMCNPPF 150 (254)
T ss_dssp SCCBSEEEECCCC
T ss_pred CCcccEEEECCCC
Confidence 3689999998654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=103.87 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+. ..+++++.+|..+ ++ +. .
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~--~~--~~-~ 248 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFK--PL--PV-T 248 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTS--CC--SC-C
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCC--cC--CC-C
Confidence 4577899999999999999999876 6779999999 9999999998876321 2479999999543 23 33 3
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
||+|++...++ .+++++.++|+|||++++...
T Consensus 249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 89999987764 467899999999999988765
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-12 Score=104.59 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=82.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~ 127 (206)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++..++.+ ..+++++.+|+.+..+ ..-..++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~---~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHHHHHhCCC
Confidence 678899999999999999998742 238999999999999999999874321 1179999999433221 1002457
Q ss_pred eeEEEecCChH---------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE---------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~---------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++++.. .++..+.+.|+|||++++++.+..
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 89999987651 145667899999999999987765
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-12 Score=104.46 Aligned_cols=112 Identities=24% Similarity=0.269 Sum_probs=84.1
Q ss_pred HHHHHHHHhhc--cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 36 IHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 36 ~~~~~~~~l~~--~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
......+.+.. ...++.+|||+|||+|.++..+++.. . .+|+++|++ .+++.+++++..++. ..+++++.+
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~-~~V~gvD~s-~~~~~a~~~~~~~~~----~~~v~~~~~ 119 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEAT-KMADHARALVKANNL----DHIVEVIEG 119 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-C-SEEEEEESS-TTHHHHHHHHHHTTC----TTTEEEEES
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcC-C-CEEEEEccH-HHHHHHHHHHHHcCC----CCeEEEEEC
Confidence 34444444432 24678999999999999999998753 2 399999999 999999999887432 246999999
Q ss_pred ccccccccCCCCCCeeEEEecCC---------hHHHHHHHHhcccCCcEEEEEe
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWT---------KEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~---------~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|. ....+ + ++||+|+++.. ...+++.+.+.|+|||++++..
T Consensus 120 d~-~~~~~--~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 120 SV-EDISL--P-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CG-GGCCC--S-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred ch-hhcCc--C-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 94 33334 4 78999999653 3447788899999999997653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=101.15 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=84.6
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+++.+. ..++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|..+.
T Consensus 181 ~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 181 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC----TTTEEEEECCTTTS
T ss_pred HHHHhcC--CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCC----CCCEEEEeCccccC
Confidence 3444443 5677899999999999999999886 6779999999 9999999998876321 24699999994332
Q ss_pred cccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++ ++. |+|++...++ .+++++.++|+|||++++....
T Consensus 253 -~~--~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 253 -SY--PEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp -CC--CCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred -CC--CCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 34 433 9999987764 3678899999999999887644
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=97.58 Aligned_cols=96 Identities=21% Similarity=0.157 Sum_probs=77.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~ 127 (206)
.++.+|||+|||+|.++..+++. + .+++++|+++.+++.++++. ..++.+|... ..++ ++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~--~~~~ 93 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPY--EEEQ 93 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCS--CTTC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCC--CCCc
Confidence 57889999999999999999876 2 59999999999999998653 2567777432 2344 6789
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|++...+++ +++++.++|+|||.+++.+++.
T Consensus 94 fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred cCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999999877643 6788999999999999988764
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-12 Score=104.94 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
..++.+|||+|||+|.++..++.. ...+|+++|+++.+++.+++++..++.+ .+++++.+|..+..+ +.-..+
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~----~~v~~~~~d~~~~~~~~~~~~~ 288 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVE----DRMKFIVGSAFEEMEKLQKKGE 288 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHTTC
T ss_pred hhCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEECCHHHHHHHHHhhCC
Confidence 347899999999999999999875 2348999999999999999999874321 279999999433211 100256
Q ss_pred CeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|+++++. ..++..+.+.|+|||++++++.+..
T Consensus 289 ~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 78999998764 3466888999999999998887754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=104.44 Aligned_cols=100 Identities=23% Similarity=0.227 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++. ...+|+++|+++ +++.+++++..++. ..+++++.+|..+ .++ + ++
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l----~~~v~~~~~d~~~-~~~--~-~~ 116 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVEE-VSL--P-EQ 116 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTTT-CCC--S-SC
T ss_pred cCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCC----CCcEEEEEcchhh-CCC--C-Cc
Confidence 467899999999999999998874 335999999996 78899888876332 2579999999432 233 3 57
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
||+|++....+ ..+..+.+.|+|||++++..
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 89999976532 35567789999999998553
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-12 Score=103.11 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=84.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~ 127 (206)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++..++.. ..+++++.+|..+..+ +....++
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~---~~~v~~~~~D~~~~~~~~~~~~~~ 293 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHHHHhcCCC
Confidence 578899999999999999998752 249999999999999999999874320 1279999999433211 1001457
Q ss_pred eeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++++. ..++..+.+.|+|||++++++.+..
T Consensus 294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 8999998754 3567888999999999999887765
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=96.59 Aligned_cols=91 Identities=23% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|.++..++. . +++|+++.+++.++++ +++++.+|. ...++ ++++||
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~------~-~~vD~s~~~~~~a~~~------------~~~~~~~d~-~~~~~--~~~~fD 104 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI------K-IGVEPSERMAEIARKR------------GVFVLKGTA-ENLPL--KDESFD 104 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC------C-EEEESCHHHHHHHHHT------------TCEEEECBT-TBCCS--CTTCEE
T ss_pred CCCcEEEeCCCCCHHHHHHHH------H-hccCCCHHHHHHHHhc------------CCEEEEccc-ccCCC--CCCCee
Confidence 488999999999999887753 2 9999999999999864 467888883 33445 778899
Q ss_pred EEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|++...++ .+++++.++|+|||.+++..+...
T Consensus 105 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 105 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 999987764 477899999999999999877643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-12 Score=101.25 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=83.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|.. .++ +. +|
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~--~~~--p~-~~ 236 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGL----SGRAQVVVGSFF--DPL--PA-GA 236 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTT--SCC--CC-SC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCc----CcCeEEecCCCC--CCC--CC-CC
Confidence 346899999999999999999877 6779999999 9999999998876321 257999999943 233 44 78
Q ss_pred eEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|++...++ .+++++.++|+|||++++.....+
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 9999987764 367899999999999998766443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=101.00 Aligned_cols=104 Identities=8% Similarity=-0.029 Sum_probs=80.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+| |+|.++..++... +..+++++|+++.+++.|++++...+ ..+++++.+|..+..+. ..+++|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~l~~-~~~~~f 242 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIG-----YEDIEIFTFDLRKPLPD-YALHKF 242 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHT-----CCCEEEECCCTTSCCCT-TTSSCB
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEEChhhhhchh-hccCCc
Confidence 4678999999 9999999998754 55699999999999999999988733 23799999995432221 024689
Q ss_pred eEEEecCCh-----HHHHHHHHhcccCCcE-EEEEecC
Q psy10573 129 RVIQSCWTK-----EEYNSWLLDQLVPGGR-MVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~-----~~~~~~~~~~L~~gG~-l~~~~~~ 160 (206)
|+|++++++ ..+++++.++|+|||+ +++.+..
T Consensus 243 D~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 243 DTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred cEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence 999999775 3467889999999994 4555554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-12 Score=101.37 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+ .+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|..+ ++ + ++
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~--~~--~-~~ 233 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLA----GERVSLVGGDMLQ--EV--P-SN 233 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHH----TTSEEEEESCTTT--CC--C-SS
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCC----CCcEEEecCCCCC--CC--C-CC
Confidence 345 899999999999999999876 6679999999 9999999988765211 2479999999543 34 4 56
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++....
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 89999988775 4778999999999999988554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-13 Score=110.93 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++-.. .....+...+ ....++ ++++
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~~~-~~~l~~--~~~~ 171 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKGIR-------VRTDFFEKAT-ADDVRR--TEGP 171 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTTCC-------EECSCCSHHH-HHHHHH--HHCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcCCC-------cceeeechhh-Hhhccc--CCCC
Confidence 3578899999999999999998753 3999999999999999876111 0001111122 233344 5778
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...+++ +++++.++|+|||++++.++.
T Consensus 172 fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 899999988754 678999999999999998764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.8e-12 Score=98.12 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=84.0
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCch----HHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhccC-
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGN- 99 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~----~~~~l~~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~- 99 (206)
..++-.|.....+.+.+... .++.+|||+|||+|. ++..+++..+. ..+|+|+|+|+.+++.|++......
T Consensus 84 t~FfRd~~~f~~l~~~llp~-~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~ 162 (274)
T 1af7_A 84 TAFFREAHHFPILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSE 162 (274)
T ss_dssp CCTTTTTTHHHHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGG
T ss_pred ccccCChHHHHHHHHHccCC-CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhh
Confidence 33333444444444443221 245799999999998 55666665432 3589999999999999998752100
Q ss_pred ----------------ccc-c--------CCCceEEEEcccccccccCCC-CCCeeEEEecCChH--------HHHHHHH
Q psy10573 100 ----------------SEL-L--------DQGRVQFVAYFWLRHLLLTNP-HGSTRVIQSCWTKE--------EYNSWLL 145 (206)
Q Consensus 100 ----------------~~~-~--------~~~~i~~~~~d~~~~~~~~~~-~~~~D~i~~~~~~~--------~~~~~~~ 145 (206)
... . ...++.|.+.|+.+ .++ + .+.||+|+|...+. .+++.+.
T Consensus 163 ~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~-~~~--~~~~~fDlI~crnvliyf~~~~~~~vl~~~~ 239 (274)
T 1af7_A 163 LKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE-KQY--NVPGPFDAIFCRNVMIYFDKTTQEDILRRFV 239 (274)
T ss_dssp GTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC-SSC--CCCCCEEEEEECSSGGGSCHHHHHHHHHHHG
T ss_pred hhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC-CCC--CcCCCeeEEEECCchHhCCHHHHHHHHHHHH
Confidence 000 0 01368999999543 334 4 57899999987753 4778999
Q ss_pred hcccCCcEEEEE
Q psy10573 146 DQLVPGGRMVMP 157 (206)
Q Consensus 146 ~~L~~gG~l~~~ 157 (206)
+.|+|||.+++.
T Consensus 240 ~~L~pgG~L~lg 251 (274)
T 1af7_A 240 PLLKPDGLLFAG 251 (274)
T ss_dssp GGEEEEEEEEEC
T ss_pred HHhCCCcEEEEE
Confidence 999999999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-12 Score=101.26 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+. ..+++++.+|+.+ ++ +. .
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~--~~--~~-~ 249 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFE--PL--PR-K 249 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTS--CC--SS-C
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCC--CC--CC-C
Confidence 4567899999999999999999876 6679999999 9999999998876322 2479999999543 23 43 3
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++....
T Consensus 250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 89999987764 3678999999999999987655
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=100.33 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=83.2
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+.+|.+|||+|||+|.++..+++.. .++|+++|+++.+++.+++++..++.+ .+++++.+|..+. .+.+
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~----~~v~~~~~D~~~~----~~~~ 191 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDF----PGEN 191 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTC----CCCS
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCcHHHh----cccc
Confidence 36889999999999999999998764 248999999999999999999985543 5699999994321 2456
Q ss_pred CeeEEEecCCh--HHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.||.|+++.+. ..++..+.++|++||++.+...
T Consensus 192 ~~D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 192 IADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEECCCCcHHHHHHHHHHHcCCCCEEEEEee
Confidence 78999998664 4577888899999999876543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-12 Score=102.24 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=91.8
Q ss_pred cCccccCcHHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHhhhccC
Q psy10573 26 GYGADISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPE----GRVYGVEHVMELAESSIKNIDKGN 99 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~----~~v~~iD~s~~~~~~a~~~~~~~~ 99 (206)
..|+.++...+...+...+... ..++.+|||+|||+|.++..+++..... .+++|+|+++.+++.|+.++...+
T Consensus 104 ~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g 183 (344)
T 2f8l_A 104 QVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR 183 (344)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC
Confidence 3466666655555444444211 3456899999999999999998776322 689999999999999999887532
Q ss_pred ccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH------------------------HHHHHHHhcccCCcEEE
Q psy10573 100 SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE------------------------EYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 100 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~------------------------~~~~~~~~~L~~gG~l~ 155 (206)
. ++.++.+|... +. +.+.||+|++++++. .+++.+.+.|+|||+++
T Consensus 184 -----~-~~~i~~~D~l~--~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~ 253 (344)
T 2f8l_A 184 -----Q-KMTLLHQDGLA--NL--LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 253 (344)
T ss_dssp -----C-CCEEEESCTTS--CC--CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred -----C-CceEEECCCCC--cc--ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 2 57888888432 22 456789999998831 36788899999999999
Q ss_pred EEecC
Q psy10573 156 MPVGE 160 (206)
Q Consensus 156 ~~~~~ 160 (206)
+.+++
T Consensus 254 ~v~p~ 258 (344)
T 2f8l_A 254 FLVPD 258 (344)
T ss_dssp EEEEG
T ss_pred EEECc
Confidence 98853
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=105.09 Aligned_cols=121 Identities=18% Similarity=0.113 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhccCC-CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 34 PHIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
+.....+...+.+... .+.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++ ..+++++.
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng-----~~~v~~~~ 267 (369)
T 3bt7_A 196 AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANH-----IDNVQIIR 267 (369)
T ss_dssp HHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTT-----CCSEEEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEE
Confidence 3444444444433332 35789999999999999988743 399999999999999999998743 35899999
Q ss_pred cccccccc-cC------------CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 113 YFWLRHLL-LT------------NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 113 ~d~~~~~~-~~------------~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|..+..+ +. +.+++||+|+++++...+...+.+.|+++|.++....++.
T Consensus 268 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 268 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPE 330 (369)
T ss_dssp CCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHH
T ss_pred CCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHH
Confidence 99433211 10 0013789999999876566777888889998888777653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=103.11 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+++.|||+|||+|.++..+++.. . .+|+++|.|+ +++.|++.+..++.+ .+|+++.++. ....+ + +.+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A-~~V~ave~s~-~~~~a~~~~~~n~~~----~~i~~i~~~~-~~~~l--p-e~~ 150 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-A-RRVYAVEASA-IWQQAREVVRFNGLE----DRVHVLPGPV-ETVEL--P-EQV 150 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEECST-THHHHHHHHHHTTCT----TTEEEEESCT-TTCCC--S-SCE
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-C-CEEEEEeChH-HHHHHHHHHHHcCCC----ceEEEEeeee-eeecC--C-ccc
Confidence 468999999999999998877653 2 3899999986 788999888875432 5799999993 33333 3 678
Q ss_pred eEEEecCC---------hHHHHHHHHhcccCCcEEEE
Q psy10573 129 RVIQSCWT---------KEEYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 129 D~i~~~~~---------~~~~~~~~~~~L~~gG~l~~ 156 (206)
|+|++... ++.++....+.|+|||+++-
T Consensus 151 DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 151 DAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp EEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 99998433 34566777899999998863
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-12 Score=98.77 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=78.5
Q ss_pred cCcc-ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGA-DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
..|| ++..+.+.+.+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++..
T Consensus 27 ~~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~------- 94 (295)
T 3gru_A 27 KLGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKEL------- 94 (295)
T ss_dssp ---CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHH-------
T ss_pred ccCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhcc-------
Confidence 3466 4477889999999987 7889999999999999999999864 3999999999999999998863
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
.++++++.+|.. ..++ ++..||+|+++.+..
T Consensus 95 ~~~v~vi~gD~l-~~~~--~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 95 YNNIEIIWGDAL-KVDL--NKLDFNKVVANLPYQ 125 (295)
T ss_dssp CSSEEEEESCTT-TSCG--GGSCCSEEEEECCGG
T ss_pred CCCeEEEECchh-hCCc--ccCCccEEEEeCccc
Confidence 258999999943 2234 556689999998864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=108.35 Aligned_cols=107 Identities=14% Similarity=0.016 Sum_probs=84.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..++... . .+|+++|+|+.+++.+++++..++.+ ..+++++.+|..+..+. ..++|
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a-~~V~aVD~s~~al~~a~~N~~~ngl~---~~~v~~i~~D~~~~l~~--~~~~f 610 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-A-RSTTTVDMSRTYLEWAERNLRLNGLT---GRAHRLIQADCLAWLRE--ANEQF 610 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHTTCC---STTEEEEESCHHHHHHH--CCCCE
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-C-CEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHh--cCCCc
Confidence 468899999999999999988743 2 37999999999999999999874421 24799999995443443 45788
Q ss_pred eEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++++. ..++..+.++|+|||++++++....
T Consensus 611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~ 661 (703)
T 3v97_A 611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG 661 (703)
T ss_dssp EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 999998863 2356888999999999998887743
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=92.40 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCC--------ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE-Ecccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPE--------GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-AYFWLRH 118 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~--------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~-~~d~~~~ 118 (206)
+.++.+|||+|||+|.++..+++..+.. ++++++|+++.. ...++.++ .+|....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------------~~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------------PLEGATFLCPADVTDP 83 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------------CCTTCEEECSCCTTSH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------------cCCCCeEEEeccCCCH
Confidence 6788999999999999999999886442 699999999831 01357778 7773221
Q ss_pred c-------ccCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 L-------LLTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 ~-------~~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. .+ ++++||+|+++..+ ..+++++.++|+|||++++..+...
T Consensus 84 ~~~~~~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 84 RTSQRILEVL--PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp HHHHHHHHHS--GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred HHHHHHHHhc--CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 1 12 45678999986532 2467888999999999999877654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-13 Score=102.28 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=81.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+...+.. ..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...+. ..+++++.+|+.
T Consensus 66 ~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~ 137 (241)
T 3gdh_A 66 AEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGI----ADKIEFICGDFL 137 (241)
T ss_dssp HHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHH
T ss_pred HHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC----CcCeEEEECChH
Confidence 4445444432 3478999999999999999998753 5999999999999999999887332 147999999943
Q ss_pred cccccCCCCCCeeEEEecCChHHH------HHHHHhcccCCcEEEEEe
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEEY------NSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~~------~~~~~~~L~~gG~l~~~~ 158 (206)
+.. ++++||+|+++++++.. +..+.++|+|||.+++..
T Consensus 138 ~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 138 LLA----SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp HHG----GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred Hhc----ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 321 34677999999886542 234677888888876554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-12 Score=102.50 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEccc------CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSG------SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G------~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
..+..++..+ ..++.+||||||| +|..+..+++...+.++|+++|+++.+. .. .+++
T Consensus 204 ~~Ye~lL~~l---~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~~--------~~rI 266 (419)
T 3sso_A 204 PHYDRHFRDY---RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------VD--------ELRI 266 (419)
T ss_dssp HHHHHHHGGG---TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------GC--------BTTE
T ss_pred HHHHHHHHhh---cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------hc--------CCCc
Confidence 3444444333 3567899999999 7777777776554778999999999872 11 2589
Q ss_pred EEEEcccccccccCCC------CCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEecC
Q psy10573 109 QFVAYFWLRHLLLTNP------HGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~------~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++.+|. ...++ . +++||+|+++... ...++++.++|||||++++....
T Consensus 267 ~fv~GDa-~dlpf--~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 267 RTIQGDQ-NDAEF--LDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEEECCT-TCHHH--HHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEEEecc-cccch--hhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999993 33333 3 5788999987542 23678999999999999987443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.6e-12 Score=105.23 Aligned_cols=99 Identities=21% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..++. ..+++++.+|+.+ .++ +++|
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl----~~~v~~~~~d~~~-~~~---~~~f 225 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVEE-VSL---PEQV 225 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTC----TTTEEEEESCTTT-CCC---SSCE
T ss_pred cCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCC----CCcEEEEECchhh-Ccc---CCCe
Confidence 56789999999999999988873 445999999998 89999998876432 2579999999433 222 3578
Q ss_pred eEEEecCChHH--------HHHHHHhcccCCcEEEEEe
Q psy10573 129 RVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 129 D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~ 158 (206)
|+|+++.+.+. .+..+.+.|+|||++++..
T Consensus 226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99999877432 3356689999999998543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=96.26 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=76.2
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.||.+ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+. .
T Consensus 6 ~gq~fl~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~----~ 76 (285)
T 1zq9_A 6 IGQHILKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPV----A 76 (285)
T ss_dssp --CCEECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTT----G
T ss_pred CCcCccCCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCC----C
Confidence 45556 57888899988886 6788999999999999999999864 3999999999999999998865221 1
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
.+++++.+|..+ .++ + +||+|+++.+.+
T Consensus 77 ~~v~~~~~D~~~-~~~--~--~fD~vv~nlpy~ 104 (285)
T 1zq9_A 77 SKLQVLVGDVLK-TDL--P--FFDTCVANLPYQ 104 (285)
T ss_dssp GGEEEEESCTTT-SCC--C--CCSEEEEECCGG
T ss_pred CceEEEEcceec-ccc--h--hhcEEEEecCcc
Confidence 479999999432 222 2 679999987754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-11 Score=94.73 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCC-CC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNP-HG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~ 126 (206)
+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++... +..+++++.+|....... .+ .+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~-----g~~~v~~~~~D~~~~~~~-~~~~~ 173 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA-----GVSCCELAEEDFLAVSPS-DPRYH 173 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEECCGGGSCTT-CGGGT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEeCChHhcCcc-ccccC
Confidence 688999999999999999999988756679999999999999999999873 345799999994332111 01 14
Q ss_pred CeeEEEecCChH------------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKE------------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~------------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||.|++++++. .+++.+.+.++ ||+++.++.+..
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 689999875530 13445556676 999998877653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=97.96 Aligned_cols=103 Identities=12% Similarity=-0.045 Sum_probs=79.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|..+..+++. + .+++++|+++.+++.|++++..... ....++++++.+|..+ + . ++|
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~-~~~~~rv~~~~~D~~~---~--~-~~f 140 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDL---D--I-KKY 140 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHH-HHTCTTEEEESSGGGS---C--C-CCE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcc-ccCCCeEEEEechHHH---H--H-hhC
Confidence 45689999999999999999876 3 6999999999999999987743100 0123689999888432 2 2 678
Q ss_pred eEEEecCChH-HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++..-+ .+++.+.+.|+|||++++...+.
T Consensus 141 D~Ii~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 141 DLIFCLQEPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp EEEEESSCCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CEEEECCCChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 9999986433 36789999999999999976554
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-11 Score=100.66 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc---cccCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH---LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~ 124 (206)
..++.+|||+|||+|.++..+++. ..+++++|+|+.+++.|++++..+ +..+++++.+|+.+. .++ +
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~-----~~~~v~f~~~d~~~~l~~~~~--~ 353 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLN-----GLQNVTFYHENLEEDVTKQPW--A 353 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEECCTTSCCSSSGG--G
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEECCHHHHhhhhhh--h
Confidence 467789999999999999999875 349999999999999999999873 335899999995432 223 5
Q ss_pred CCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecC
Q psy10573 125 HGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 125 ~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++||+|+++++.. .+++.+. .++|++++++++..
T Consensus 354 ~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc~p 391 (433)
T 1uwv_A 354 KNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNP 391 (433)
T ss_dssp TTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEESCH
T ss_pred cCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEECCh
Confidence 67899999998753 3444333 36888888877654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=103.50 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=96.0
Q ss_pred cCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC------------CCceEEEEeCCHHHHHHHHH
Q psy10573 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG------------PEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~------------~~~~v~~iD~s~~~~~~a~~ 93 (206)
..|+.++...+...+++.+. ..++.+|+|.|||+|.++..+++... ...+++|+|+++.++..|+.
T Consensus 149 ~~G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~ 226 (445)
T 2okc_A 149 GAGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM 226 (445)
T ss_dssp CCGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred cCCcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHH
Confidence 45777788888888888886 66788999999999999998887541 12489999999999999999
Q ss_pred hhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-----------------------HHHHHHHhcccC
Q psy10573 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-----------------------EYNSWLLDQLVP 150 (206)
Q Consensus 94 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-----------------------~~~~~~~~~L~~ 150 (206)
++...+.. ..++.++.+|.... + ..++||+|++++++. .+++.+.+.|+|
T Consensus 227 nl~l~g~~---~~~~~i~~gD~l~~-~---~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~ 299 (445)
T 2okc_A 227 NLYLHGIG---TDRSPIVCEDSLEK-E---PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT 299 (445)
T ss_dssp HHHHTTCC---SSCCSEEECCTTTS-C---CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE
T ss_pred HHHHhCCC---cCCCCEeeCCCCCC-c---ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc
Confidence 88763321 11567788883321 1 234789999998752 357889999999
Q ss_pred CcEEEEEecC
Q psy10573 151 GGRMVMPVGE 160 (206)
Q Consensus 151 gG~l~~~~~~ 160 (206)
||++++.++.
T Consensus 300 gG~~a~V~p~ 309 (445)
T 2okc_A 300 GGRAAVVLPD 309 (445)
T ss_dssp EEEEEEEEEH
T ss_pred CCEEEEEECC
Confidence 9999888864
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=98.87 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++.. ++ ...+++++|+++.+++.+++++..++. ..+++++.+|..+. . ++
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~-----~-~~ 258 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREV-----D-VK 258 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGC-----C-CC
T ss_pred cCCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHh-----c-CC
Confidence 56889999999999999999 76 245999999999999999999987442 14799999994332 2 67
Q ss_pred eeEEEecCCh--HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++++. ..+++.+.++|+|||++++...+..
T Consensus 259 fD~Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 259 GNRVIMNLPKFAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EEEEEECCTTTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CcEEEECCcHhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 8999998653 3577889999999999998876653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=102.79 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=87.8
Q ss_pred cccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
....|+.++.+.+...+.+.+. ..++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|
T Consensus 15 ~~~~g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------ 80 (421)
T 2ih2_A 15 PRSLGRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------ 80 (421)
T ss_dssp ------CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------
T ss_pred cccCceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------
Confidence 3445777778888888888875 34567999999999999999998764456999999999888666
Q ss_pred CCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------H---------------------HHHHHHHhcc
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------E---------------------EYNSWLLDQL 148 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~---------------------~~~~~~~~~L 148 (206)
.+++++.+|.... . +.++||+|++++++ . .+++.+.++|
T Consensus 81 --~~~~~~~~D~~~~--~--~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~L 154 (421)
T 2ih2_A 81 --PWAEGILADFLLW--E--PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL 154 (421)
T ss_dssp --TTEEEEESCGGGC--C--CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE
T ss_pred --CCCcEEeCChhhc--C--ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHh
Confidence 2578889884331 1 34678999997553 1 3467889999
Q ss_pred cCCcEEEEEecCC
Q psy10573 149 VPGGRMVMPVGEP 161 (206)
Q Consensus 149 ~~gG~l~~~~~~~ 161 (206)
+|||++++.++..
T Consensus 155 k~~G~~~~i~p~~ 167 (421)
T 2ih2_A 155 KPGGVLVFVVPAT 167 (421)
T ss_dssp EEEEEEEEEEEGG
T ss_pred CCCCEEEEEEChH
Confidence 9999999988763
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=94.89 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeC-CHHHHHHHHHhhhccCccccCC-----CceEEEEccccccc-cc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH-VMELAESSIKNIDKGNSELLDQ-----GRVQFVAYFWLRHL-LL 121 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~~~~~~~~-----~~i~~~~~d~~~~~-~~ 121 (206)
.++.+|||+|||+|.++..+++.. ..+|+++|+ ++.+++.+++++..+.....+. .+++++..++.+.. .+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 577899999999999999887642 248999999 8999999999984321110111 36778766533211 11
Q ss_pred --CCCCCCeeEEEecCCh------HHHHHHHHhccc---C--CcEEEEEecC
Q psy10573 122 --TNPHGSTRVIQSCWTK------EEYNSWLLDQLV---P--GGRMVMPVGE 160 (206)
Q Consensus 122 --~~~~~~~D~i~~~~~~------~~~~~~~~~~L~---~--gG~l~~~~~~ 160 (206)
.+++++||+|++...+ ..+++.+.++|+ | ||++++....
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 0035678999985443 357789999999 9 9988775443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-12 Score=98.10 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=72.2
Q ss_pred HHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE-Ecc
Q psy10573 37 HAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-AYF 114 (206)
Q Consensus 37 ~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~-~~d 114 (206)
...+++.+. + .++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+.+.- +++... ..|
T Consensus 73 l~~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~----------~rv~~~~~~n 138 (291)
T 3hp7_A 73 LEKALAVFN--LSVEDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQD----------DRVRSMEQYN 138 (291)
T ss_dssp HHHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTC----------TTEEEECSCC
T ss_pred HHHHHHhcC--CCccccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhC----------cccceecccC
Confidence 334444443 3 357899999999999999888752 349999999999998854321 233222 223
Q ss_pred cccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEE
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~ 157 (206)
......-.++..+||+|+++..+ ..++.++.++|+|||.+++.
T Consensus 139 i~~l~~~~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 139 FRYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GGGCCGGGCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred ceecchhhCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence 11111101255568999987775 45779999999999999887
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=104.28 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=96.0
Q ss_pred cCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-----------------CceEEEEeCCHHHH
Q psy10573 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----------------EGRVYGVEHVMELA 88 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-----------------~~~v~~iD~s~~~~ 88 (206)
..|+.++...+...|++.+. ..++.+|+|.|||+|.++..+.+.+.. ..+++|+|+++.++
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 35777788888888888876 567889999999999999888765421 13799999999999
Q ss_pred HHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------------------HHHHHHHhcc
Q psy10573 89 ESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------------------EYNSWLLDQL 148 (206)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------------------~~~~~~~~~L 148 (206)
..|+.++...+.+.....++.+..+|....... +.+.||+|++|+++. .+++.+.+.|
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~--~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~L 302 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 302 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCCcccccc--cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHh
Confidence 999998876332100001267788884332223 456789999998752 3678899999
Q ss_pred cCCcEEEEEecCC
Q psy10573 149 VPGGRMVMPVGEP 161 (206)
Q Consensus 149 ~~gG~l~~~~~~~ 161 (206)
+|||++.+.++..
T Consensus 303 k~gGr~a~V~p~~ 315 (541)
T 2ar0_A 303 HPGGRAAVVVPDN 315 (541)
T ss_dssp EEEEEEEEEEEHH
T ss_pred CCCCEEEEEecCc
Confidence 9999999888753
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=91.40 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc----C-
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL----T- 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~- 122 (206)
+.++.+|||+|||+|.++..+++. .++|+++|+++.. ..++++++.+|..+.... .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~----------------~~~~v~~~~~D~~~~~~~~~~~~~ 83 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME----------------EIAGVRFIRCDIFKETIFDDIDRA 83 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC----------------CCTTCEEEECCTTSSSHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc----------------cCCCeEEEEccccCHHHHHHHHHH
Confidence 578999999999999999999876 4599999999741 124789999994321100 0
Q ss_pred CC---CCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 123 NP---HGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 123 ~~---~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++ .++||+|+++... ...++.+.++|+|||.|++.++...
T Consensus 84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~ 143 (191)
T 3dou_A 84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD 143 (191)
T ss_dssp HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence 01 1478999997542 2355778899999999999888665
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=96.53 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=72.5
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
..+||.+ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~----- 87 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYE----- 87 (299)
T ss_dssp -----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHT-----
T ss_pred hccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHc-----
Confidence 3456666 47888888888886 6788999999999999999998753 49999999999999999988652
Q ss_pred CCCceEEEEcccccccccCCCCCCeeEEEecCChHH
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
+.++++++.+|..+ . +.++||+|+++.+...
T Consensus 88 ~~~~v~~~~~D~~~-~----~~~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 88 GYNNLEVYEGDAIK-T----VFPKFDVCTANIPYKI 118 (299)
T ss_dssp TCCCEEC----CCS-S----CCCCCSEEEEECCGGG
T ss_pred CCCceEEEECchhh-C----CcccCCEEEEcCCccc
Confidence 23579999998432 1 3347899999888643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-11 Score=98.79 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+.....+.+.+.+ +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++ .. ++++.+
T Consensus 275 ~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ng-----l~-v~~~~~ 344 (425)
T 2jjq_A 275 SYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINN-----VD-AEFEVA 344 (425)
T ss_dssp HHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHT-----CC-EEEEEC
T ss_pred HHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEEC
Confidence 4455566665544 5778899999999999999998753 399999999999999999987632 34 899999
Q ss_pred ccccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEecCC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|..+. ...+||+|+++++.. .+++.+ ..|+|+|++++++...
T Consensus 345 d~~~~-----~~~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvsc~p~ 390 (425)
T 2jjq_A 345 SDREV-----SVKGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVSCNPE 390 (425)
T ss_dssp CTTTC-----CCTTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEESCHH
T ss_pred ChHHc-----CccCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEECChH
Confidence 94332 122689999998842 344544 4589999999886543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=99.72 Aligned_cols=106 Identities=15% Similarity=-0.003 Sum_probs=81.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc----------ccCCCceEEEEccccccc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----------LLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----------~~~~~~i~~~~~d~~~~~ 119 (206)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++..+... ..+..+++++.+|.....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 68899999999999999999876 3458999999999999999999874100 002235899999943322
Q ss_pred ccCCCCCCeeEEEecCCh--HHHHHHHHhcccCCcEEEEEe
Q psy10573 120 LLTNPHGSTRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. ..+.||+|+.++.. ..+++.+.+.|++||++++++
T Consensus 126 ~~--~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AE--RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HH--STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hh--ccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 21 23468999998753 468888999999999888775
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-11 Score=97.23 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++.. +..+++++|+++ ++. +++.... ....+++++.+|.. .+. + +
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~--~~~~~~~----~~~~~v~~~~~d~~--~~~--p--~ 247 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRAE-VVA--RHRLDAP----DVAGRWKVVEGDFL--REV--P--H 247 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECHH-HHT--TCCCCCG----GGTTSEEEEECCTT--TCC--C--C
T ss_pred ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCHH-Hhh--ccccccc----CCCCCeEEEecCCC--CCC--C--C
Confidence 4677899999999999999999877 677899999943 433 3222221 11357999999943 233 4 7
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+|||++++....
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 89999987764 4778999999999999987653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=92.87 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred cCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+||++ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..
T Consensus 6 ~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~------- 73 (255)
T 3tqs_A 6 RFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ------- 73 (255)
T ss_dssp ---CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT-------
T ss_pred cCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh-------
Confidence 356655 56889999999987 7889999999999999999998754 4999999999999999998864
Q ss_pred CCceEEEEccccccccc-C-CCCCCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLL-T-NPHGSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~-~-~~~~~~D~i~~~~~~~ 138 (206)
..+++++.+|..+ .++ . ..++.|| |++|.+..
T Consensus 74 ~~~v~~i~~D~~~-~~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 74 QKNITIYQNDALQ-FDFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp CTTEEEEESCTTT-CCGGGSCCSSCEE-EEEECCHH
T ss_pred CCCcEEEEcchHh-CCHHHhccCCCeE-EEecCCcc
Confidence 2589999999432 122 0 1235678 78887764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-10 Score=85.72 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 32 SSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
..+.+...++..+... ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++. ++++
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~----------~~~~ 99 (200)
T 1ne2_A 32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG----------GVNF 99 (200)
T ss_dssp CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT----------TSEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC----------CCEE
Confidence 4455555555554321 346789999999999999999875 23479999999999999998753 5789
Q ss_pred EEcccccccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEe
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|..+ + + ++||+|+++++++. +++++.+.+ |.+++++
T Consensus 100 ~~~d~~~---~--~-~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~ 146 (200)
T 1ne2_A 100 MVADVSE---I--S-GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIG 146 (200)
T ss_dssp EECCGGG---C--C-CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEE
T ss_pred EECcHHH---C--C-CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEE
Confidence 9988432 2 3 67899999988543 456666666 4454444
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=103.64 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~ 126 (206)
+..+.+|||+|||.|.++..+++.. +.|+|||.++.+++.|+.++.+. +..++++..++..+. ..+ .++
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~-----~~~~~~~~~~~~~~~~~~~--~~~ 133 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEEN-----PDFAAEFRVGRIEEVIAAL--EEG 133 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTS-----TTSEEEEEECCHHHHHHHC--CTT
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhc-----CCCceEEEECCHHHHhhhc--cCC
Confidence 4567899999999999999999854 49999999999999999998762 224689999984332 234 677
Q ss_pred CeeEEEecCChHHHH--------HHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYN--------SWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~--------~~~~~~L~~gG~l~~~~ 158 (206)
+||+|++..+++++. ..+.+.|+++|..++..
T Consensus 134 ~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 134 EFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp SCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred CccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 899999999998864 34555677766554443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-10 Score=93.56 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=87.8
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-------------------------------------
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP------------------------------------- 74 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~------------------------------------- 74 (206)
..+.+.+.++.... ..++..|||.+||+|.+++.++.....
T Consensus 185 l~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 185 IKETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp CCHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CcHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 44556666666654 678899999999999999888765421
Q ss_pred CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh----------HHHHHHH
Q psy10573 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK----------EEYNSWL 144 (206)
Q Consensus 75 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~----------~~~~~~~ 144 (206)
..+++|+|+++.+++.|++++...+.. .+++++++|+.+ .+ ..++||+|++|+++ ..+...+
T Consensus 263 ~~~V~GvDid~~al~~Ar~Na~~~gl~----~~I~~~~~D~~~-~~---~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~l 334 (393)
T 3k0b_A 263 PLNIIGGDIDARLIEIAKQNAVEAGLG----DLITFRQLQVAD-FQ---TEDEYGVVVANPPYGERLEDEEAVRQLYREM 334 (393)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCT----TCSEEEECCGGG-CC---CCCCSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChHh-CC---CCCCCCEEEECCCCccccCCchhHHHHHHHH
Confidence 146999999999999999999874422 368999999433 22 23478999999884 2233444
Q ss_pred HhcccC--CcEEEEEecCCC
Q psy10573 145 LDQLVP--GGRMVMPVGEPF 162 (206)
Q Consensus 145 ~~~L~~--gG~l~~~~~~~~ 162 (206)
.+.|++ ||.+++.+....
T Consensus 335 g~~lk~~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 335 GIVYKRMPTWSVYVLTSYEL 354 (393)
T ss_dssp HHHHHTCTTCEEEEEECCTT
T ss_pred HHHHhcCCCCEEEEEECCHH
Confidence 455554 888888877654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-12 Score=98.12 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=70.3
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-ccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~ 115 (206)
...+++.+. ...++.+|||+|||+|.++..+++.. . .+|+++|+|+.+++.++++...... ....++.+.. .+.
T Consensus 25 L~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~-~~V~gvDis~~ml~~a~~~~~~~~~--~~~~~~~~~~~~~~ 99 (232)
T 3opn_A 25 LEKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-A-KLVYALDVGTNQLAWKIRSDERVVV--MEQFNFRNAVLADF 99 (232)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEECSSCCCCCHHHHTCTTEEE--ECSCCGGGCCGGGC
T ss_pred HHHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-C-CEEEEEcCCHHHHHHHHHhCccccc--cccceEEEeCHhHc
Confidence 445555553 12346799999999999999998762 2 3999999999999988765432000 0001222222 111
Q ss_pred ccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
....+ ...+||+++++ +..++.++.++|+|||.+++.+
T Consensus 100 -~~~~~--d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 100 -EQGRP--SFTSIDVSFIS--LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp -CSCCC--SEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE
T ss_pred -CcCCC--CEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE
Confidence 00012 22345655554 3678899999999999999864
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=98.45 Aligned_cols=104 Identities=11% Similarity=-0.064 Sum_probs=81.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEcccccccc-cCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~-~~~~~~ 126 (206)
.++.+|||++||+|.++..++...+...+|+++|+++.+++.++++++.++.+ .+ ++++.+|...... . ..+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~----~~~v~v~~~Da~~~l~~~--~~~ 124 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP----EDRYEIHGMEANFFLRKE--WGF 124 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECSCHHHHHHSC--CSS
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CceEEEEeCCHHHHHHHh--hCC
Confidence 46789999999999999999886522258999999999999999999985432 24 8999999443322 1 245
Q ss_pred CeeEEEecCC--hHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.||+|++++. ...+++.+.+.|++||++++++
T Consensus 125 ~fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 125 GFDYVDLDPFGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 6899999983 2457888899999999888876
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=92.83 Aligned_cols=112 Identities=20% Similarity=0.137 Sum_probs=87.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.....+||-||.|.|..++.+++.. +..+++.+|+++.+++.+++.+........+.++++++.+|......- ..++
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~--~~~~ 157 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ--TSQT 157 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC--SSCC
T ss_pred CCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh--cccc
Confidence 3567899999999999999998765 445999999999999999999864221113468999999995444333 5678
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++..- ..+.+.+.+.|+|||+++....++.
T Consensus 158 yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~ 202 (294)
T 3o4f_A 158 FDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCF 202 (294)
T ss_dssp EEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred CCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 9999987542 2467899999999999998876654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-11 Score=92.72 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=76.7
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
..+||++ ..+.+.+.+++.+. +.++ +|||+|||+|.++..+++.. .+|+++|+++.+++.+++++..
T Consensus 23 k~~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~------ 90 (271)
T 3fut_A 23 KRFGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG------ 90 (271)
T ss_dssp TTSSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT------
T ss_pred ccCCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC------
Confidence 3456666 57889999999987 7788 99999999999999999864 4999999999999999998753
Q ss_pred CCCceEEEEcccccccccCCCC-CCeeEEEecCCh
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPH-GSTRVIQSCWTK 137 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~-~~~D~i~~~~~~ 137 (206)
.+++++.+|..+ .++ ++ ..+|.|++|.+.
T Consensus 91 --~~v~vi~~D~l~-~~~--~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 91 --LPVRLVFQDALL-YPW--EEVPQGSLLVANLPY 120 (271)
T ss_dssp --SSEEEEESCGGG-SCG--GGSCTTEEEEEEECS
T ss_pred --CCEEEEECChhh-CCh--hhccCccEEEecCcc
Confidence 579999999432 222 22 246999998875
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-10 Score=83.68 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=80.8
Q ss_pred ccCcHHHHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 30 DISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
....+.+...+...+... ..++.+|||+|||+|.++..+++.. . .+++++|+++.+++.+++++...+ . ++
T Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~ 99 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-A-KEVICVEVDKEAVDVLIENLGEFK-----G-KF 99 (207)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHTGGGT-----T-SE
T ss_pred ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHcC-----C-CE
Confidence 335566666666555421 3467899999999999999998752 2 389999999999999999987622 2 78
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEE
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~ 157 (206)
+++.+|..+ + + ++||+|++++++ ..+++.+.+.+ |+.++..
T Consensus 100 ~~~~~d~~~---~--~-~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 100 KVFIGDVSE---F--N-SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp EEEESCGGG---C--C-CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred EEEECchHH---c--C-CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 999999433 2 2 367999999874 23667777777 5544433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-10 Score=91.07 Aligned_cols=121 Identities=14% Similarity=0.070 Sum_probs=88.5
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-------------------------------------
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP------------------------------------- 74 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~------------------------------------- 74 (206)
..+.+.+.++.... ..++..++|.+||+|.+++.++.....
T Consensus 178 l~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 255 (384)
T 3ldg_A 178 IKENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI 255 (384)
T ss_dssp CCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CcHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence 34556666666655 678899999999999999988765421
Q ss_pred CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh----------HHHHHHH
Q psy10573 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK----------EEYNSWL 144 (206)
Q Consensus 75 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~----------~~~~~~~ 144 (206)
..+++|+|+++.+++.|++++...+.+ ..++++++|+.+ .+. .++||+|++|+++ ..+...+
T Consensus 256 ~~~v~GvDid~~al~~Ar~Na~~~gl~----~~I~~~~~D~~~-l~~---~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~l 327 (384)
T 3ldg_A 256 QLDISGFDFDGRMVEIARKNAREVGLE----DVVKLKQMRLQD-FKT---NKINGVLISNPPYGERLLDDKAVDILYNEM 327 (384)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCGGG-CCC---CCCSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChHH-CCc---cCCcCEEEECCchhhccCCHHHHHHHHHHH
Confidence 146999999999999999999874432 369999999433 222 3478999999884 2244455
Q ss_pred HhcccC--CcEEEEEecCCC
Q psy10573 145 LDQLVP--GGRMVMPVGEPF 162 (206)
Q Consensus 145 ~~~L~~--gG~l~~~~~~~~ 162 (206)
.+.|++ ||.+++.+....
T Consensus 328 g~~lk~~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 328 GETFAPLKTWSQFILTNDTD 347 (384)
T ss_dssp HHHHTTCTTSEEEEEESCTT
T ss_pred HHHHhhCCCcEEEEEECCHH
Confidence 555655 899988887654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.4e-11 Score=94.37 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeC----CHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH----VMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~----s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~ 122 (206)
+.++.+|||+|||+|.++..+++. ++|+++|+ ++..++. .... ....+++.++.+ |... +
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~----~~~~---~~~~~~v~~~~~~D~~~---l- 144 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEP----IPMS---TYGWNLVRLQSGVDVFF---I- 144 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCC----CCCC---STTGGGEEEECSCCTTT---S-
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHH----HHhh---hcCCCCeEEEecccccc---C-
Confidence 577899999999999999999875 38999998 5533211 1010 011257888888 7321 2
Q ss_pred CCCCCeeEEEecCChH------------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 123 NPHGSTRVIQSCWTKE------------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~------------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.++||+|+++..+. ..+..+.++|+|||.+++.++.+
T Consensus 145 -~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 145 -PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred -CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 456789999976531 24677789999999999987766
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-10 Score=88.05 Aligned_cols=107 Identities=22% Similarity=0.212 Sum_probs=75.9
Q ss_pred CCeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCC--C
Q psy10573 51 GARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNP--H 125 (206)
Q Consensus 51 ~~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~--~ 125 (206)
...|||||||+ +..+..+++...|.++|+++|.|+.++..+++++... ...+++++.+|..+... +.-+ .
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~-----~~~~~~~v~aD~~~~~~~l~~~~~~ 153 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST-----PEGRTAYVEADMLDPASILDAPELR 153 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC-----SSSEEEEEECCTTCHHHHHTCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC-----CCCcEEEEEecccChhhhhcccccc
Confidence 36899999997 4445555555457889999999999999999988652 22479999999433210 0000 2
Q ss_pred CCee-----EEEecCChHH---------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTR-----VIQSCWTKEE---------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D-----~i~~~~~~~~---------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++|| .|+++..+|+ ++.++.+.|+|||+|+++.....
T Consensus 154 ~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 154 DTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 3334 5777777653 66788999999999999977654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-11 Score=95.82 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=75.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++ .++++++.+|..+ ++ +.+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~--~~--p~~-- 262 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFD--GV--PKG-- 262 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT--CC--CCC--
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCC--CC--CCC--
Confidence 456899999999999999999887 7779999999 777766542 1579999999543 44 654
Q ss_pred eEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++...++ .++++++++|+|||++++....
T Consensus 263 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 263 DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999988775 3678999999999999987554
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-10 Score=92.00 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC-------------------------------------CC
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-------------------------------------PE 75 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-------------------------------------~~ 75 (206)
...+.+.++.... ..++..|||.+||+|.+++.++.... +.
T Consensus 180 ~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 180 RETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred cHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 4445555555544 67789999999999999999876642 11
Q ss_pred ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH----------HHHHHHH
Q psy10573 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE----------EYNSWLL 145 (206)
Q Consensus 76 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~----------~~~~~~~ 145 (206)
.+|+|+|+++.+++.|++++...+.+ .++++.++|+.+ .. .+++||+|++|+++. .+...+.
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~----~~i~~~~~D~~~-l~---~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVD----EYIEFNVGDATQ-FK---SEDEFGFIITNPPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEECCGGG-CC---CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChhh-cC---cCCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence 47999999999999999999874321 379999999433 22 235789999999851 2334455
Q ss_pred hcccC--CcEEEEEecCCC
Q psy10573 146 DQLVP--GGRMVMPVGEPF 162 (206)
Q Consensus 146 ~~L~~--gG~l~~~~~~~~ 162 (206)
+.|++ |+.+++.+....
T Consensus 330 ~~lk~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 330 YAFRKLKNWSYYLITSYED 348 (385)
T ss_dssp HHHHTSBSCEEEEEESCTT
T ss_pred HHHhhCCCCEEEEEECCHH
Confidence 55655 888888877654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-10 Score=92.69 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|+|+|||+|.++..+++.. |+.+++..|. |.+++.++++... ....+++++.+|+... +. ..
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~-----~~~~rv~~~~gD~~~~-~~----~~ 244 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSF-----QEEEQIDFQEGDFFKD-PL----PE 244 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTS-CC----CC
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhh-----cccCceeeecCccccC-CC----CC
Confidence 3556799999999999999999987 7778888886 7899999988765 2346899999994321 22 34
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|++++...++. ++++++++|+|||++++.-.
T Consensus 245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 599999877653 67899999999999988754
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=89.89 Aligned_cols=112 Identities=12% Similarity=-0.038 Sum_probs=84.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+...+...+.+..+|||||||+|-++..+.... +..+++++|+++.+++.+++++..++ .+..+...|..
T Consensus 119 lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g------~~~~~~v~D~~ 191 (281)
T 3lcv_B 119 LDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLN------VPHRTNVADLL 191 (281)
T ss_dssp HHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTT------CCEEEEECCTT
T ss_pred HHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeeec
Confidence 333444454556778899999999999999887654 67799999999999999999998743 24778888833
Q ss_pred cccccCCCCCCeeEEEecCChHHHH-------HHHHhcccCCcEEEEEecC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEEYN-------SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~~~-------~~~~~~L~~gG~l~~~~~~ 160 (206)
. ..+.+.+|++++.-.++.+- -++.+.|+++|+++ +.+.
T Consensus 192 ~----~~p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvV-Sfp~ 237 (281)
T 3lcv_B 192 E----DRLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVV-TFPT 237 (281)
T ss_dssp T----SCCCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEE-EEEC
T ss_pred c----cCCCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEE-eccc
Confidence 2 12567789999998887643 26788999999765 4443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=95.60 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE--EcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--AYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~ 125 (206)
+.++.+|||+|||+|.++..+++. ++|+++|+++ +...+++.... .. ....++.++ .+|... + ++
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~--~~-~~~~~v~~~~~~~D~~~---l--~~ 146 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRL--VE-TFGWNLITFKSKVDVTK---M--EP 146 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCC--CC-CTTGGGEEEECSCCGGG---C--CC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhh--hh-hcCCCeEEEeccCcHhh---C--CC
Confidence 578899999999999999999875 4999999998 43222211100 00 001268888 778432 3 67
Q ss_pred CCeeEEEecCC-------hH-----HHHHHHHhcccCCc--EEEEEecCCC
Q psy10573 126 GSTRVIQSCWT-------KE-----EYNSWLLDQLVPGG--RMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~-------~~-----~~~~~~~~~L~~gG--~l~~~~~~~~ 162 (206)
++||+|+++.. .+ .+++.+.++|+||| .+++.++.+.
T Consensus 147 ~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~ 197 (276)
T 2wa2_A 147 FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY 197 (276)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence 78899999754 11 24678889999999 9998877643
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=95.12 Aligned_cols=102 Identities=21% Similarity=0.092 Sum_probs=71.0
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE--EcccccccccCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--AYFWLRHLLLTNP 124 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~ 124 (206)
.+.++.+|||+|||+|.++..+++. ++|+++|+++ +...+++.... .. ....++.++ .+|... + +
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~--~~-~~~~~v~~~~~~~D~~~---l--~ 137 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRI--TE-SYGWNIVKFKSRVDIHT---L--P 137 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCC--CC-BTTGGGEEEECSCCTTT---S--C
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhh--hh-ccCCCeEEEecccCHhH---C--C
Confidence 3678899999999999999998875 4999999998 42222111000 00 001167888 777432 3 6
Q ss_pred CCCeeEEEecCC-------hH-----HHHHHHHhcccCCc--EEEEEecCC
Q psy10573 125 HGSTRVIQSCWT-------KE-----EYNSWLLDQLVPGG--RMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~-------~~-----~~~~~~~~~L~~gG--~l~~~~~~~ 161 (206)
+++||+|+++.. .+ .+++.+.++|+||| .+++.++.+
T Consensus 138 ~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~ 188 (265)
T 2oxt_A 138 VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP 188 (265)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence 678899999754 11 25678889999999 999988773
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.5e-11 Score=89.68 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=70.3
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+++.+.. ..++.+|||+|||+|.++..+. .+++++|+++. +++++.+|. ..
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~~~d~-~~ 108 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVTVCDM-AQ 108 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEEESCT-TS
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEEEecc-cc
Confidence 45555542 3677899999999999988762 38999999986 234567773 23
Q ss_pred cccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++ ++++||+|++...+ ..+++++.++|+|||.+++.....
T Consensus 109 ~~~--~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 109 VPL--EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp CSC--CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred CCC--CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 445 77889999998764 457799999999999999976543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-12 Score=99.54 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=89.4
Q ss_pred cCccc-cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGAD-ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+||+ ...+.....+++.+. +.++.+|||+|||+|.++..+++.. ++++++|+++.+++.+++++..
T Consensus 6 ~~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~------- 73 (245)
T 1yub_A 6 KYSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL------- 73 (245)
T ss_dssp CSCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------
T ss_pred ccCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc-------
Confidence 34553 356778888888876 6788999999999999999998864 4999999999999988876642
Q ss_pred CCceEEEEcccccccccCCC-CCCeeEEEecCCh-------HHH----------H----HHHHhcccCCcEEEEEecCCC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNP-HGSTRVIQSCWTK-------EEY----------N----SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~-~~~~D~i~~~~~~-------~~~----------~----~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..+++++.+|.. ..++ + +++| .|+++.+. .++ + +.+.++|+|||.+.+.+....
T Consensus 74 ~~~v~~~~~D~~-~~~~--~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~ 149 (245)
T 1yub_A 74 NTRVTLIHQDIL-QFQF--PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQV 149 (245)
T ss_dssp CSEEEECCSCCT-TTTC--CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTTTB
T ss_pred CCceEEEECChh-hcCc--ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhheehe
Confidence 257899999943 2333 4 3678 67776542 111 1 558899999999887766544
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-11 Score=96.21 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=74.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++ .++++++.+|..+ ++ +.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~--~~--~~-- 267 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFA--SV--PQ-- 267 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT--CC--CC--
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCccc--CC--CC--
Confidence 3567899999999999999999887 6778999999 888776643 1469999999433 34 44
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
||+|++...++ .+++++.++|+|||++++...
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 79999988775 477899999999999998743
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=94.38 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ .++++++.+|..+ ++ +.+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~--p~~- 260 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFK--EV--PSG- 260 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT--CC--CCC-
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCC--CC--CCC-
Confidence 3567899999999999999999887 7779999999 777666542 1579999999543 45 654
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++...++ .++++++++|+|||++++....
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999987775 3678999999999999987554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-11 Score=100.26 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=94.6
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC--------------CCceEEEEeCCHHHHHH
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--------------PEGRVYGVEHVMELAES 90 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--------------~~~~v~~iD~s~~~~~~ 90 (206)
...|+.++.+.+...|++.+. ..++ +|+|.+||+|.+...+.+.+. ....++|+|+++.++..
T Consensus 222 k~~G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l 298 (544)
T 3khk_A 222 KQGGQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL 298 (544)
T ss_dssp CCSTTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred ccCCeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence 345788888999999999886 4444 999999999999888765431 03589999999999999
Q ss_pred HHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------------------------------
Q psy10573 91 SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-------------------------------- 138 (206)
Q Consensus 91 a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-------------------------------- 138 (206)
|+.++...+.+ .++.+..+|......+ +...||+|++|+++.
T Consensus 299 A~~Nl~l~gi~----~~i~i~~gDtL~~~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~ 372 (544)
T 3khk_A 299 AAMNMVIRGID----FNFGKKNADSFLDDQH--PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGN 372 (544)
T ss_dssp HHHHHHHTTCC----CBCCSSSCCTTTSCSC--TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTC
T ss_pred HHHHHHHhCCC----cccceeccchhcCccc--ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcc
Confidence 99988764321 2344466773332223 567889999987753
Q ss_pred ---HHHHHHHhcccCCcEEEEEecC
Q psy10573 139 ---EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 139 ---~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+++.+.+.|+|||++.+.++.
T Consensus 373 ~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 373 ANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHhccCceEEEEecc
Confidence 2457889999999999888875
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.15 E-value=9e-10 Score=85.01 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=70.7
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
+||.+ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .
T Consensus 8 ~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~-------~ 75 (244)
T 1qam_A 8 HSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------H 75 (244)
T ss_dssp --CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------C
T ss_pred CCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc-------C
Confidence 34444 55777777777765 6788999999999999999999875 4999999999999999998753 2
Q ss_pred CceEEEEcccccccccCCCC-CCeeEEEecCCh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPH-GSTRVIQSCWTK 137 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~-~~~D~i~~~~~~ 137 (206)
++++++.+|.. ..++ ++ ..| .|+++.+.
T Consensus 76 ~~v~~~~~D~~-~~~~--~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 76 DNFQVLNKDIL-QFKF--PKNQSY-KIFGNIPY 104 (244)
T ss_dssp CSEEEECCCGG-GCCC--CSSCCC-EEEEECCG
T ss_pred CCeEEEEChHH-hCCc--ccCCCe-EEEEeCCc
Confidence 47999999943 3333 43 345 56666554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=94.05 Aligned_cols=94 Identities=11% Similarity=0.140 Sum_probs=75.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+..+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++. ++++++.+|..+ ++ +.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~--~~--p~-- 246 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-----------NNLTYVGGDMFT--SI--PN-- 246 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-----------TTEEEEECCTTT--CC--CC--
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-----------CCcEEEeccccC--CC--CC--
Confidence 3567899999999999999999877 6779999999 8888776531 359999999433 33 42
Q ss_pred eeEEEecCChH--------HHHHHHHhcccC---CcEEEEEecC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVP---GGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~---gG~l~~~~~~ 160 (206)
||+|++...++ .+++++.++|+| ||++++....
T Consensus 247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 79999988765 467899999999 9999887543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.2e-10 Score=86.55 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=76.7
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
..+||++ ..+.+.+.+++.+. +.++.+|||+|||+|.++..+++.... .++++++|+++.+++.++++. .
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~----- 89 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G----- 89 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G-----
T ss_pred ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C-----
Confidence 3456655 67888999999886 788999999999999999999987642 245999999999999999884 2
Q ss_pred cCCCceEEEEcccccccccC-CCC-C--CeeEEEecCChHH
Q psy10573 103 LDQGRVQFVAYFWLRHLLLT-NPH-G--STRVIQSCWTKEE 139 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~~~~~-~~~-~--~~D~i~~~~~~~~ 139 (206)
.+++++.+|..+ .++. +.+ + ..+.|+.|.+..-
T Consensus 90 ---~~v~~i~~D~~~-~~~~~~~~~~~~~~~~vv~NlPY~i 126 (279)
T 3uzu_A 90 ---ELLELHAGDALT-FDFGSIARPGDEPSLRIIGNLPYNI 126 (279)
T ss_dssp ---GGEEEEESCGGG-CCGGGGSCSSSSCCEEEEEECCHHH
T ss_pred ---CCcEEEECChhc-CChhHhcccccCCceEEEEccCccc
Confidence 479999999332 2220 011 1 2357888887653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=91.68 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.|++++... + .+++++.
T Consensus 11 ~pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~-----g-~~v~~v~ 81 (301)
T 1m6y_A 11 IPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEF-----S-DRVSLFK 81 (301)
T ss_dssp CCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGG-----T-TTEEEEE
T ss_pred cHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhc-----C-CcEEEEE
Confidence 3557788888886 7788999999999999999999886 4679999999999999999998762 2 5899999
Q ss_pred cccccccc-c-CCCCCCeeEEEecCChH
Q psy10573 113 YFWLRHLL-L-TNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 113 ~d~~~~~~-~-~~~~~~~D~i~~~~~~~ 138 (206)
+|+.+... + ....++||.|+++.++.
T Consensus 82 ~d~~~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 82 VSYREADFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEcCccc
Confidence 99433211 1 00125789999987653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=92.59 Aligned_cols=131 Identities=12% Similarity=-0.053 Sum_probs=100.0
Q ss_pred cCccccCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhccCcc
Q psy10573 26 GYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSE 101 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~ 101 (206)
..|+.++.+.+...|.+.+.... .++.+|+|.+||+|.+...+.+.+. ...+++|+|+++.++..|+.++...+.
T Consensus 195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi- 273 (542)
T 3lkd_A 195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV- 273 (542)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC-
T ss_pred cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC-
Confidence 45788888889999999887322 3678999999999999988887752 245899999999999999998876332
Q ss_pred ccCCCceEEEEcccccc--cccCCCCCCeeEEEecCChH-----------------------------HHHHHHHhccc-
Q psy10573 102 LLDQGRVQFVAYFWLRH--LLLTNPHGSTRVIQSCWTKE-----------------------------EYNSWLLDQLV- 149 (206)
Q Consensus 102 ~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~i~~~~~~~-----------------------------~~~~~~~~~L~- 149 (206)
...++.+..+|.... ... +...||+|++|+++- .++..+.+.|+
T Consensus 274 --~~~~~~I~~gDtL~~d~p~~--~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~ 349 (542)
T 3lkd_A 274 --PIENQFLHNADTLDEDWPTQ--EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQ 349 (542)
T ss_dssp --CGGGEEEEESCTTTSCSCCS--SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCT
T ss_pred --CcCccceEecceeccccccc--ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCC
Confidence 124678889984332 112 467889999987741 14578899999
Q ss_pred CCcEEEEEecCC
Q psy10573 150 PGGRMVMPVGEP 161 (206)
Q Consensus 150 ~gG~l~~~~~~~ 161 (206)
+||++.+.++..
T Consensus 350 ~gGr~a~VlP~g 361 (542)
T 3lkd_A 350 DNGVMAIVLPHG 361 (542)
T ss_dssp TTCEEEEEEETH
T ss_pred CceeEEEEecch
Confidence 999999888864
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-09 Score=94.81 Aligned_cols=134 Identities=9% Similarity=-0.065 Sum_probs=92.0
Q ss_pred ccCccccCcHHHHHHHHHH----hhccCCCCCeEEEEcccCchHHHHHHHHhC--CCceEEEEeCCHHHHHHH--HHhhh
Q psy10573 25 IGYGADISSPHIHAQMLEL----LKDKIKPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESS--IKNID 96 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~v~~iD~s~~~~~~a--~~~~~ 96 (206)
...|+.++.+.+...|++. +.....++.+|+|.|||+|.++..+++..+ ...+++|+|+++.++..| +.++.
T Consensus 292 kk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~ 371 (878)
T 3s1s_A 292 GHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLL 371 (878)
T ss_dssp CCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTT
T ss_pred CcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3457777888888888777 222234678999999999999999987663 135899999999999999 54443
Q ss_pred ccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-----------------------------------HHH
Q psy10573 97 KGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-----------------------------------EYN 141 (206)
Q Consensus 97 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-----------------------------------~~~ 141 (206)
.+... .+.....+...|+...... ..+.||+|++|+++- .++
T Consensus 372 lN~Ll-hGi~~~~I~~dD~L~~~~~--~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFI 448 (878)
T 3s1s_A 372 FPQLV-SSNNAPTITGEDVCSLNPE--DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFL 448 (878)
T ss_dssp STTTC-BTTBCCEEECCCGGGCCGG--GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHH
T ss_pred Hhhhh-cCCCcceEEecchhccccc--ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHH
Confidence 21111 1122234444453332222 456789999998861 034
Q ss_pred HHHHhcccCCcEEEEEecCC
Q psy10573 142 SWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 142 ~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+.+.|++||++.+.++..
T Consensus 449 e~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 449 ELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp HHHHHHSCTTCEEEEEEETH
T ss_pred HHHHHhcCCCcEEEEEEChH
Confidence 66788999999999998864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=81.52 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=77.7
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 119 (206)
+...+... .++.+|||+|||+|-++..+. +...++++|+++.+++.++.++..++ .+..+...|... .
T Consensus 96 fY~~i~~~-~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~-~ 163 (253)
T 3frh_A 96 LYDFIFSA-ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLC-A 163 (253)
T ss_dssp HHHHHTSS-CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTT-S
T ss_pred HHHHHhcC-CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeeccc-C
Confidence 33344443 667899999999999998876 45599999999999999999987633 467888888332 2
Q ss_pred ccCCCCCCeeEEEecCChHHHH-------HHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYN-------SWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~-------~~~~~~L~~gG~l~~~~~ 159 (206)
+ +.+++|++++.-..+.+- -++.+.|+++|+++ +.+
T Consensus 164 ~---~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvV-sfP 206 (253)
T 3frh_A 164 P---PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAV-SFP 206 (253)
T ss_dssp C---CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEE-EEE
T ss_pred C---CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEE-EcC
Confidence 2 455789999987776532 37778899987654 555
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=89.35 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=72.1
Q ss_pred HHHHHHHhh---ccCCCCCeEEEEcccC------chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 37 HAQMLELLK---DKIKPGARILDIGSGS------GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 37 ~~~~~~~l~---~~~~~~~~vLDlG~G~------G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
+..+.+.+. ..+.++.+|||+|||+ |. ..+++..++.++|+++|+++. + .+
T Consensus 47 y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----------~~ 106 (290)
T 2xyq_A 47 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----------SD 106 (290)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----------CS
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----------CC
Confidence 444545452 1367889999999955 65 445566655679999999997 1 25
Q ss_pred eEE-EEcccccccccCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 108 VQF-VAYFWLRHLLLTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 108 i~~-~~~d~~~~~~~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++ +++|..+ .++ .++||+|+++... ..+++.+.++|+|||+|++..+...
T Consensus 107 v~~~i~gD~~~-~~~---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~ 175 (290)
T 2xyq_A 107 ADSTLIGDCAT-VHT---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 175 (290)
T ss_dssp SSEEEESCGGG-CCC---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred CEEEEECcccc-CCc---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 677 8999432 233 3678999997431 2577889999999999999776554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.6e-09 Score=90.69 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC--------------------------------------
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-------------------------------------- 73 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-------------------------------------- 73 (206)
..+.+.+.++.... ..++..+||.+||+|.+++.++....
T Consensus 174 l~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~ 251 (703)
T 3v97_A 174 IKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG 251 (703)
T ss_dssp SCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence 44556677776665 67888999999999999988876531
Q ss_pred ---CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCCCeeEEEecCChH----------H
Q psy10573 74 ---PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHGSTRVIQSCWTKE----------E 139 (206)
Q Consensus 74 ---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~i~~~~~~~----------~ 139 (206)
+..+++|+|+++.+++.|+.++...+.+ ..+++.++|+.+.. +. ..++||+|++|+++- .
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~----~~i~~~~~D~~~~~~~~--~~~~~d~Iv~NPPYG~Rlg~~~~l~~ 325 (703)
T 3v97_A 252 LAEYSSHFYGSDSDARVIQRARTNARLAGIG----ELITFEVKDVAQLTNPL--PKGPYGTVLSNPPYGERLDSEPALIA 325 (703)
T ss_dssp HHHCCCCEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEECCGGGCCCSC--TTCCCCEEEECCCCCC---CCHHHHH
T ss_pred cccCCccEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChhhCcccc--ccCCCCEEEeCCCccccccchhHHHH
Confidence 1248999999999999999999885432 35899999954322 22 344789999998841 1
Q ss_pred HH---HHHHhcccCCcEEEEEecCCC
Q psy10573 140 YN---SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 140 ~~---~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+. ..+.+.+.|||.+++.+....
T Consensus 326 ly~~l~~~lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 326 LHSLLGRIMKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCHH
T ss_pred HHHHHHHHHHhhCCCCeEEEEeCCHH
Confidence 22 334455568999999887643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-09 Score=86.30 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc-CCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-DQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
..+|.+|||+|+|.|+=+..++... ..+.++++|+++..+...++++.+.+.... ...++.+...|....... ..+
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~ 222 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGD 222 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STT
T ss_pred CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccc
Confidence 7899999999999999999998765 566899999999999999998876432211 124688888884333333 567
Q ss_pred CeeEEEecCChH------------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKE------------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~------------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.||.|+++.++. .+++.+.+.|||||+++-++++..
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 889999987741 255778889999999999999865
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=88.96 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|... ++ + +|
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~--~~--~--~~ 252 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFK--SI--P--SA 252 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTT--CC--C--CC
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCC--CC--C--Cc
Confidence 466899999999999999999887 6778999999 677765542 1469999999433 34 4 37
Q ss_pred eEEEecCChH--------HHHHHHHhcccC---CcEEEEEec
Q psy10573 129 RVIQSCWTKE--------EYNSWLLDQLVP---GGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~--------~~~~~~~~~L~~---gG~l~~~~~ 159 (206)
|+|++...++ .+++++.++|+| ||++++...
T Consensus 253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 9999988765 467899999999 999988654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-10 Score=88.80 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH-------HHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM-------ELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~-------~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
..++.+|||+|||+|.++..+++. .++|+++|+++ .+++.+++++..++. ..+++++.+|..+..+
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAEQMP 153 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHHHHH
Confidence 456789999999999999999875 34999999999 999999887765221 1359999999443222
Q ss_pred -cCCCC--CCeeEEEecCChH
Q psy10573 121 -LTNPH--GSTRVIQSCWTKE 138 (206)
Q Consensus 121 -~~~~~--~~~D~i~~~~~~~ 138 (206)
+ ++ ++||+|+++++++
T Consensus 154 ~~--~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 154 AL--VKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HH--HHHHCCCSEEEECCCC-
T ss_pred hh--hccCCCccEEEECCCCC
Confidence 3 33 5779999987643
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=83.58 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=72.5
Q ss_pred cCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+||++ ..+.+...+++.+. +.++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++ ..
T Consensus 8 ~~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~-~~------- 75 (249)
T 3ftd_A 8 SFGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI-GD------- 75 (249)
T ss_dssp CCCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS-CC-------
T ss_pred cccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc-cC-------
Confidence 356644 56888899998886 778899999999999999999875 235999999999999999876 22
Q ss_pred CCceEEEEcccccccccCCCC--CCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPH--GSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~--~~~D~i~~~~~~~ 138 (206)
.+++++.+|..+ .++ ++ +. ..|+.|.+..
T Consensus 76 -~~v~~i~~D~~~-~~~--~~~~~~-~~vv~NlPy~ 106 (249)
T 3ftd_A 76 -ERLEVINEDASK-FPF--CSLGKE-LKVVGNLPYN 106 (249)
T ss_dssp -TTEEEECSCTTT-CCG--GGSCSS-EEEEEECCTT
T ss_pred -CCeEEEEcchhh-CCh--hHccCC-cEEEEECchh
Confidence 579999999322 222 21 13 4777777753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.3e-10 Score=81.70 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||. +++|+|+.+++.++++... +++++.+|..+.....+++++
T Consensus 10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCC
Confidence 68899999999985 1289999999999988643 488888884332210126789
Q ss_pred eeEEEecCChH-------HHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE-------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~-------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
||+|++...++ .+++++.++|||||++++..+
T Consensus 64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 99999975543 467999999999999999644
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=76.35 Aligned_cols=104 Identities=14% Similarity=-0.020 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc--------
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-------- 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 119 (206)
+.+..+|||+|| |+.+..+++. ++++|+++|.+++..+.+++++...+.. ...+++++.+|..+..
T Consensus 28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~--~~~~I~~~~gda~~~~~wg~p~~~ 101 (202)
T 3cvo_A 28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPA--EGTEVNIVWTDIGPTGDWGHPVSD 101 (202)
T ss_dssp HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCC--TTCEEEEEECCCSSBCGGGCBSSS
T ss_pred hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCCceEEEEeCchhhhcccccccc
Confidence 456789999998 5777777763 3579999999999999999999874320 0357999998832210
Q ss_pred ------c-c-----CCC-CCCeeEEEecCChH-HHHHHHHhcccCCcEEEEE
Q psy10573 120 ------L-L-----TNP-HGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 120 ------~-~-----~~~-~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~ 157 (206)
+ + .+. .+.||+|+++.... ..+..+.+.|+|||+|++-
T Consensus 102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEET
T ss_pred hhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEe
Confidence 0 0 012 36799999998743 4455677999999999764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-09 Score=81.70 Aligned_cols=94 Identities=11% Similarity=0.068 Sum_probs=69.1
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
...+.+.+.+++.+. +.++.+|||+|||+|.++. +. .. ...+++++|+++.+++.+++++.. .+++++
T Consensus 4 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~ 71 (252)
T 1qyr_A 4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL-------GPKLTI 71 (252)
T ss_dssp ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT-------GGGEEE
T ss_pred cCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc-------CCceEE
Confidence 366788999999886 7888999999999999999 64 33 322399999999999999987753 247999
Q ss_pred EEcccccccccC-CC--CCCeeEEEecCCh
Q psy10573 111 VAYFWLRHLLLT-NP--HGSTRVIQSCWTK 137 (206)
Q Consensus 111 ~~~d~~~~~~~~-~~--~~~~D~i~~~~~~ 137 (206)
+.+|... .++. +. .+..|.|++|.+.
T Consensus 72 i~~D~~~-~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 72 YQQDAMT-FNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp ECSCGGG-CCHHHHHHHHTSCEEEEEECCT
T ss_pred EECchhh-CCHHHhhcccCCceEEEECCCC
Confidence 9999432 1110 00 1234788888774
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=87.88 Aligned_cols=83 Identities=19% Similarity=0.077 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++.... .+..+++++.+|..+..+. .++++
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~---~gl~~i~~i~~Da~~~L~~-~~~~~ 163 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLL---NEGKDVNILTGDFKEYLPL-IKTFH 163 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHS---CTTCEEEEEESCGGGSHHH-HHHHC
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhc---cCCCcEEEEECcHHHhhhh-ccCCC
Confidence 4568999999999999999988753 499999999999999999998630 0235799999995432111 02345
Q ss_pred eeEEEecCCh
Q psy10573 128 TRVIQSCWTK 137 (206)
Q Consensus 128 ~D~i~~~~~~ 137 (206)
||+|+++++.
T Consensus 164 fDvV~lDPPr 173 (410)
T 3ll7_A 164 PDYIYVDPAR 173 (410)
T ss_dssp CSEEEECCEE
T ss_pred ceEEEECCCC
Confidence 6999998774
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.4e-09 Score=83.23 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.+...+++.|. +.++..++|.++|.|..+..+++.+++.++|+++|.++.+++.++ ++. ..+++++.+
T Consensus 43 pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~--------~~Rv~lv~~ 111 (347)
T 3tka_A 43 TVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID--------DPRFSIIHG 111 (347)
T ss_dssp CTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC--------CTTEEEEES
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc--------CCcEEEEeC
Confidence 567888888887 789999999999999999999998878889999999999999984 442 258999998
Q ss_pred ccccccc----cCCCCCCeeEEEecCC
Q psy10573 114 FWLRHLL----LTNPHGSTRVIQSCWT 136 (206)
Q Consensus 114 d~~~~~~----~~~~~~~~D~i~~~~~ 136 (206)
++.+... .++ .+++|.|+.+.+
T Consensus 112 nF~~l~~~L~~~g~-~~~vDgILfDLG 137 (347)
T 3tka_A 112 PFSALGEYVAERDL-IGKIDGILLDLG 137 (347)
T ss_dssp CGGGHHHHHHHTTC-TTCEEEEEEECS
T ss_pred CHHHHHHHHHhcCC-CCcccEEEECCc
Confidence 8433211 111 135799988744
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.8e-08 Score=84.75 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=92.2
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC------------CceEEEEeCCHHHHHHHHHh
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP------------EGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~------------~~~v~~iD~s~~~~~~a~~~ 94 (206)
.|++++...+...|++.+. ..++.+|+|-+||+|.+...+.+.+.. ...++|+|+++.....|+-+
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred CceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 5788888999999999987 678889999999999999877654321 23699999999999999988
Q ss_pred hhccCccccCCCceEEEEccccccc-ccCCCCCCeeEEEecCChH----------------------HHHHHHHhccc--
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHGSTRVIQSCWTKE----------------------EYNSWLLDQLV-- 149 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~i~~~~~~~----------------------~~~~~~~~~L~-- 149 (206)
+...+ .....+..+|..... .-..+...||+|++|+++- .+++.+.+.|+
T Consensus 274 l~lhg-----~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~ 348 (530)
T 3ufb_A 274 LLLHG-----LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRP 348 (530)
T ss_dssp HHHHT-----CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCT
T ss_pred HHhcC-----CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhh
Confidence 76533 233455666622110 0001345689999999961 13466677776
Q ss_pred -----CCcEEEEEecC
Q psy10573 150 -----PGGRMVMPVGE 160 (206)
Q Consensus 150 -----~gG~l~~~~~~ 160 (206)
+||++.+.++.
T Consensus 349 ~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 349 GHGSDNGGRAAVVVPN 364 (530)
T ss_dssp TSSSSSCCEEEEEEEH
T ss_pred hhccCCCceEEEEecc
Confidence 79999988875
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=77.32 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=79.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhC----CCceEEEEeCCHH--------------------------HHHHHHHhhhcc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVME--------------------------LAESSIKNIDKG 98 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~v~~iD~s~~--------------------------~~~~a~~~~~~~ 98 (206)
.....|||+|+..|+.+..++..+. +.++++++|..+. .++.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 4567999999999999988876552 3679999996421 356678888763
Q ss_pred CccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEec
Q psy10573 99 NSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 99 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+. ...+++++.+++.+..+ .++.++||+|+++.... ..++.+...|+|||+|++--+
T Consensus 185 gl---~~~~I~li~Gda~etL~-~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DL---LDEQVRFLPGWFKDTLP-TAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TC---CSTTEEEEESCHHHHST-TCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CC---CcCceEEEEeCHHHHHh-hCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 32 12689999999655444 23667899999998863 256888999999999987544
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=80.40 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc---ccCCCceEEEEcccccccc-cCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE---LLDQGRVQFVAYFWLRHLL-LTNP 124 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~~~i~~~~~d~~~~~~-~~~~ 124 (206)
.++.+||-||.|.|..++.+++.. + .+++.+|+++.+++.+++.+...... ....++++++.+|...... ..-.
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~-~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLK-P-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTC-C-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcC-C-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 456899999999999999998753 3 59999999999999999987642111 1112468999999322211 0002
Q ss_pred CCCeeEEEecCCh----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 125 HGSTRVIQSCWTK----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 125 ~~~~D~i~~~~~~----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++||+|+.+..- ..+.+.+.+.|+|||+++....+..
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~ 335 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN 335 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence 3467999987321 2355788999999999988765543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=79.58 Aligned_cols=92 Identities=20% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHHHhhccCCCC--CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC--ccccC-C-CceEEEEc
Q psy10573 40 MLELLKDKIKPG--ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN--SELLD-Q-GRVQFVAY 113 (206)
Q Consensus 40 ~~~~l~~~~~~~--~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~~-~-~~i~~~~~ 113 (206)
+.+.+. +.++ .+|||+|||+|..+..++... ++|+++|+++.+...++.++.... .+.++ . .+++++.+
T Consensus 78 l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 344443 4566 899999999999999999863 389999999988777766654311 11111 1 47999999
Q ss_pred ccccccccCCCCCCeeEEEecCChH
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
|..+.... ++ +.||+|+++++++
T Consensus 153 D~~~~L~~-~~-~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 153 SSLTALTD-IT-PRPQVVYLDPMFP 175 (258)
T ss_dssp CHHHHSTT-CS-SCCSEEEECCCCC
T ss_pred CHHHHHHh-Cc-ccCCEEEEcCCCC
Confidence 94443331 12 3689999998764
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.9e-08 Score=74.59 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.+...+++.+. +.++..+||.+||.|..+..+++. +++++|+|.++.+++.+++ +.. .+++++.+
T Consensus 8 pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~ 73 (285)
T 1wg8_A 8 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQG 73 (285)
T ss_dssp CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEES
T ss_pred hHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEEC
Confidence 567888888887 788999999999999999999986 4599999999999999998 643 48999999
Q ss_pred cccccccc--CCCCCCeeEEEecCChH
Q psy10573 114 FWLRHLLL--TNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 114 d~~~~~~~--~~~~~~~D~i~~~~~~~ 138 (206)
++.+...+ ....+++|.|+.+.++.
T Consensus 74 ~f~~l~~~L~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 74 NFRHLKRHLAALGVERVDGILADLGVS 100 (285)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CcchHHHHHHHcCCCCcCEEEeCCccc
Confidence 94432111 01335789999877653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=81.85 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=66.3
Q ss_pred CCeEEEEcccCchHHHHHH---HHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 51 GARILDIGSGSGYLTACLA---YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~---~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+..|+|+|||+|-++...+ +..+...+||+||-++ +...+++....++. ..+|+++.+|. ..... +++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~----~dkVtVI~gd~-eev~L---PEK 428 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW----GSQVTVVSSDM-REWVA---PEK 428 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT----GGGEEEEESCT-TTCCC---SSC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC----CCeEEEEeCcc-eeccC---Ccc
Confidence 3579999999999854443 3333445789999998 45566666655332 35799999993 32222 367
Q ss_pred eeEEEecCC--------hHHHHHHHHhcccCCcEEE
Q psy10573 128 TRVIQSCWT--------KEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 128 ~D~i~~~~~--------~~~~~~~~~~~L~~gG~l~ 155 (206)
+|+|++-.. ...++....+.|||||+++
T Consensus 429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 899998543 2345667788999999874
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-08 Score=84.16 Aligned_cols=99 Identities=15% Similarity=0.013 Sum_probs=66.2
Q ss_pred CCeEEEEcccCchHHHHHHHH---hC---------CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 51 GARILDIGSGSGYLTACLAYM---AG---------PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~---~~---------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
+..|||+|||+|-++...+.. .+ ...+||+||.++.+....+..... + ...+|+++.+|..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N-g----~~d~VtVI~gd~ee- 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR-T----WKRRVTIIESDMRS- 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH-T----TTTCSEEEESCGGG-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc-C----CCCeEEEEeCchhh-
Confidence 468999999999997543222 22 234999999999777666555442 1 12569999999332
Q ss_pred ccc---CCCCCCeeEEEecCC--------hHHHHHHHHhcccCCcEEE
Q psy10573 119 LLL---TNPHGSTRVIQSCWT--------KEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 119 ~~~---~~~~~~~D~i~~~~~--------~~~~~~~~~~~L~~gG~l~ 155 (206)
... .-..+.+|+|++-.. .+..+..+.+.|+|||+++
T Consensus 484 v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 111 001567799998544 2346677788999999875
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=73.79 Aligned_cols=108 Identities=11% Similarity=-0.076 Sum_probs=70.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh------CCC-----ceEEEEeCCH---H-----------HHHHHHHhhhccCcc--
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA------GPE-----GRVYGVEHVM---E-----------LAESSIKNIDKGNSE-- 101 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~------~~~-----~~v~~iD~s~---~-----------~~~~a~~~~~~~~~~-- 101 (206)
.++.+|||+|+|+|..+..+++.. .|. .+++++|..+ + ....+++.+..+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 355799999999999998876543 453 4889999876 3 333555554431100
Q ss_pred -------ccCCCceEEEEcccccccccCCCC---CCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEE
Q psy10573 102 -------LLDQGRVQFVAYFWLRHLLLTNPH---GSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 102 -------~~~~~~i~~~~~d~~~~~~~~~~~---~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~ 157 (206)
..+..+++++.+|..+..+. +++ +.||+|+.++.. ..+++.+.++|+|||+++..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~-~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ty 212 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQ-LDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 212 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGG-SCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEES
T ss_pred chhheeccCCceEEEEEECcHHHHHhh-cccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEE
Confidence 01224678999995443332 122 378999997521 34788999999999998753
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=73.76 Aligned_cols=103 Identities=16% Similarity=0.029 Sum_probs=68.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||||||+|.++..++... +...++++|+.-+.... .... ... ..++.....+ .+...+ +++.
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~----pi~~--~~~-g~~ii~~~~~-~dv~~l--~~~~ 140 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEK----PMNV--QSL-GWNIITFKDK-TDIHRL--EPVK 140 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCC----CCCC--CBT-TGGGEEEECS-CCTTTS--CCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccc----cccc--CcC-CCCeEEEecc-ceehhc--CCCC
Confidence 6888899999999999999887654 33478888887442100 0000 000 0144444554 222334 7788
Q ss_pred eeEEEecCChH------------HHHHHHHhcccCC-cEEEEEecCC
Q psy10573 128 TRVIQSCWTKE------------EYNSWLLDQLVPG-GRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~------------~~~~~~~~~L~~g-G~l~~~~~~~ 161 (206)
+|+|+++.... .+++.+.++|+|| |.|++-++.+
T Consensus 141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 99999987432 2457778999999 9999999884
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=70.38 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=82.4
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCC---CCeEEEEcccCchHHHHHHHH-------------h---CCC
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKP---GARILDIGSGSGYLTACLAYM-------------A---GPE 75 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~vLDlG~G~G~~~~~l~~~-------------~---~~~ 75 (206)
...|...+. .........|.+.+.+.+........ ..+|+|+||++|..+..+... . .|.
T Consensus 15 ~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe 93 (384)
T 2efj_A 15 DTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPT 93 (384)
T ss_dssp -CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CE
T ss_pred hhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCc
Confidence 566777777 44333334454455554444321222 478999999999999877664 1 144
Q ss_pred ceEEEEeCC-----------HHHHHHHHHhhhccCccccCCCceEEEEccccc--ccccCCCCCCeeEEEecCChHHH--
Q psy10573 76 GRVYGVEHV-----------MELAESSIKNIDKGNSELLDQGRVQFVAYFWLR--HLLLTNPHGSTRVIQSCWTKEEY-- 140 (206)
Q Consensus 76 ~~v~~iD~s-----------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~i~~~~~~~~~-- 140 (206)
.+++..|+. +...+.+++... ...+..|+.+.... ...| |++++|+|+++..+|++
T Consensus 94 ~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g-------~~~~~~f~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~ 164 (384)
T 2efj_A 94 IQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG-------RKIGSCLIGAMPGSFYSRLF--PEESMHFLHSCYCLHWLSQ 164 (384)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-------CCTTSEEEEECCSCTTSCCS--CTTCEEEEEEESCTTBCSS
T ss_pred eEEEecCCCccchHHHHhhhhhhHhhhhhhcc-------CCCCceEEEecchhhhhccC--CCCceEEEEecceeeecCC
Confidence 566777865 222222211110 01123555555222 2334 99999999998887541
Q ss_pred -------------------------------------------HHHHHhcccCCcEEEEEecCCCCC
Q psy10573 141 -------------------------------------------NSWLLDQLVPGGRMVMPVGEPFKG 164 (206)
Q Consensus 141 -------------------------------------------~~~~~~~L~~gG~l~~~~~~~~~~ 164 (206)
++...+.|+|||++++++.+....
T Consensus 165 ~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 165 VPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp SCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred CchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCc
Confidence 222378999999999999886643
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-07 Score=72.65 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||||||+|.++..++... +...++++|++......+.. .. ....++.....+ .+...+ +.+.
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~------~~-~~g~~ii~~~~~-~dv~~l--~~~~ 156 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIM------RT-TLGWNLIRFKDK-TDVFNM--EVIP 156 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC------CC-BTTGGGEEEECS-CCGGGS--CCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccc------cc-cCCCceEEeeCC-cchhhc--CCCC
Confidence 6888999999999999999988655 44578899987642111100 00 001133333322 111223 6778
Q ss_pred eeEEEecCChH------------HHHHHHHhcccCC--cEEEEEecCC
Q psy10573 128 TRVIQSCWTKE------------EYNSWLLDQLVPG--GRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~------------~~~~~~~~~L~~g--G~l~~~~~~~ 161 (206)
+|+|+++.+.. .+++-+.++|+|| |.|++-++.+
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 89999986642 2456667899999 9999998883
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-06 Score=69.94 Aligned_cols=110 Identities=17% Similarity=0.100 Sum_probs=66.9
Q ss_pred CCeEEEEcccCchHHHHHHHH--------h------CCCceEEEEeCCHHHHHHHHHhhhccCc-------cccCCCceE
Q psy10573 51 GARILDIGSGSGYLTACLAYM--------A------GPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQ 109 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~--------~------~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~i~ 109 (206)
..+|+|+|||+|..+..+... . .|..+++.-|.-..-....=+.+..... ......+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999998776321 1 1456777778666554444333432100 000000112
Q ss_pred EEEccc--ccccccCCCCCCeeEEEecCChHH--------------------------------------------HHHH
Q psy10573 110 FVAYFW--LRHLLLTNPHGSTRVIQSCWTKEE--------------------------------------------YNSW 143 (206)
Q Consensus 110 ~~~~d~--~~~~~~~~~~~~~D~i~~~~~~~~--------------------------------------------~~~~ 143 (206)
|+.+.. -....| |++++|+|+++..+|+ +++.
T Consensus 133 f~~gvpgSFy~rlf--P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 133 FVAGVPGSFYRRLF--PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp EEEEEESCTTSCCS--CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccC--CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 112334 8999999999877654 2345
Q ss_pred HHhcccCCcEEEEEecCCC
Q psy10573 144 LLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 144 ~~~~L~~gG~l~~~~~~~~ 162 (206)
..+.|+|||++++++.+..
T Consensus 211 ra~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHHHEEEEEEEEEEEEECC
T ss_pred HHHHhCCCCEEEEEEecCC
Confidence 5899999999999988654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=61.06 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=63.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCc-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G-~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
.+.+.+.+.+...++.+|||+|||+| ..+..|++.. +..|+++|+++..++ +++.|.
T Consensus 22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~--------------------~v~dDi 79 (153)
T 2k4m_A 22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG--------------------IVRDDI 79 (153)
T ss_dssp HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT--------------------EECCCS
T ss_pred HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc--------------------eEEccC
Confidence 55555555555667789999999999 5888887643 358999999985444 455552
Q ss_pred ccccccCCCCCCeeEEEecCChHHHHHHHHhcc-cCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQL-VPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~l~~~~~~~~ 162 (206)
.+...- ....||+|++..+...+-..+.++. +-|.-+++...+.+
T Consensus 80 F~P~~~--~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E 125 (153)
T 2k4m_A 80 TSPRME--IYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGE 125 (153)
T ss_dssp SSCCHH--HHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTB
T ss_pred CCCccc--ccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 221000 0135699977655444333333333 24677777766655
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.24 E-value=9.6e-07 Score=71.49 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=87.2
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHH---------------hCCCceE
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYM---------------AGPEGRV 78 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~---------------~~~~~~v 78 (206)
...|.+++...........|.+.+.+.+..... .....+|+|+||++|..+..+... -.|..+|
T Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v 94 (359)
T 1m6e_X 15 ENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQI 94 (359)
T ss_dssp STTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEE
Confidence 444665555433333333444444444444321 223367999999999877554332 1355678
Q ss_pred EEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc--ccccCCCCCCeeEEEecCChHHH----------------
Q psy10573 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR--HLLLTNPHGSTRVIQSCWTKEEY---------------- 140 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~i~~~~~~~~~---------------- 140 (206)
+..|........+-+.+..... ..+..|+.+.... ...| |++++|+|+++..+|++
T Consensus 95 ~~nDLp~NDFntlF~~L~~~~~----~~~~~f~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~ 168 (359)
T 1m6e_X 95 FLNDLPGNDFNAIFRSLPIEND----VDGVCFINGVPGSFYGRLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYM 168 (359)
T ss_dssp EEEECTTSCHHHHHTTTTTSCS----CTTCEEEEEEESCSSSCCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSS
T ss_pred EecCCCchHHHHHHHhcchhcc----cCCCEEEEecchhhhhccC--CCCceEEEEehhhhhhcccCchhhhccCCceEe
Confidence 8889888877777766653110 0123455554111 2335 99999999998776542
Q ss_pred -----------------------HHHHHhcccCCcEEEEEecCCCC
Q psy10573 141 -----------------------NSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 141 -----------------------~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
++...+.|+|||++++++.+...
T Consensus 169 ~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~ 214 (359)
T 1m6e_X 169 ANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRS 214 (359)
T ss_dssp CSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 44558899999999999887653
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.6e-06 Score=66.55 Aligned_cols=103 Identities=14% Similarity=0.007 Sum_probs=65.7
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+.++.+||||||++|.++..+++.. +...++++|+........ . ... ....++.....+ .+.. .+..+
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P-----~-~~~-~~~~~iv~~~~~-~di~--~l~~~ 146 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKP-----I-HMQ-TLGWNIVKFKDK-SNVF--TMPTE 146 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCC-----C-CCC-BTTGGGEEEECS-CCTT--TSCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccc-----c-ccc-ccCCceEEeecC-ceee--ecCCC
Confidence 46889999999999999999998754 334788999865321000 0 000 000122222222 1111 23567
Q ss_pred CeeEEEecCChH------------HHHHHHHhcccCC-cEEEEEecC
Q psy10573 127 STRVIQSCWTKE------------EYNSWLLDQLVPG-GRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~------------~~~~~~~~~L~~g-G~l~~~~~~ 160 (206)
.+|+|+++.... .+++-+.++|+|| |.|++-++.
T Consensus 147 ~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 147 PSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 789999976632 2556678899999 999999888
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.9e-06 Score=65.80 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+|.++||+||++|+++..+++.. ++|++||+.+-. .... ..++++++.+|.... .. +.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l~-~~l~-----------~~~~V~~~~~d~~~~-~~--~~~~ 270 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPMA-QSLM-----------DTGQVTWLREDGFKF-RP--TRSN 270 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCCC-HHHH-----------TTTCEEEECSCTTTC-CC--CSSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhcC-hhhc-----------cCCCeEEEeCccccc-cC--CCCC
Confidence 6899999999999999999998753 499999987522 1111 136899999983221 12 4567
Q ss_pred eeEEEecCChH
Q psy10573 128 TRVIQSCWTKE 138 (206)
Q Consensus 128 ~D~i~~~~~~~ 138 (206)
+|+|+++....
T Consensus 271 ~D~vvsDm~~~ 281 (375)
T 4auk_A 271 ISWMVCDMVEK 281 (375)
T ss_dssp EEEEEECCSSC
T ss_pred cCEEEEcCCCC
Confidence 89999987753
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=64.38 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=65.3
Q ss_pred cccCcccc-CcHHHHHHHHHHhhccCC------CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 24 QIGYGADI-SSPHIHAQMLELLKDKIK------PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
.+..||.+ ..+.+...+++.+. +. ++..|||||.|.|.++..|++... ..+++++|+++..+...++.+
T Consensus 27 kk~lGQnFL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~- 102 (353)
T 1i4w_A 27 KFFYGFKYLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF- 102 (353)
T ss_dssp CCGGGCCCBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-
T ss_pred CCCCCcCccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-
Confidence 34556666 67999999999986 43 358999999999999999998642 238999999999999998876
Q ss_pred ccCccccCCCceEEEEccc
Q psy10573 97 KGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 97 ~~~~~~~~~~~i~~~~~d~ 115 (206)
. .++++++.+|.
T Consensus 103 ~-------~~~l~ii~~D~ 114 (353)
T 1i4w_A 103 E-------GSPLQILKRDP 114 (353)
T ss_dssp T-------TSSCEEECSCT
T ss_pred c-------CCCEEEEECCc
Confidence 2 25899999993
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=8.1e-06 Score=62.47 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=65.6
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc---eEEEEc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR---VQFVAY 113 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~---i~~~~~ 113 (206)
...+.+.- .++|+.+|||+||+.|.++..+++..+ .+.+.|..+..+. . . .... ..... +++..+
T Consensus 62 L~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~-vg~V~G~vig~D~-~-----~--~P~~-~~~~Gv~~i~~~~G 129 (269)
T 2px2_A 62 LRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKN-VQEVRGYTKGGPG-H-----E--EPML-MQSYGWNIVTMKSG 129 (269)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTT-EEEEEEECCCSTT-S-----C--CCCC-CCSTTGGGEEEECS
T ss_pred HHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcC-CCCceeEEEcccc-c-----c--CCCc-ccCCCceEEEeecc
Confidence 34444442 479999999999999999999987621 1244444433321 0 0 0000 00012 355546
Q ss_pred -ccccccccCCCCCCeeEEEecCCh-------H-----HHHHHHHhcccCCc-EEEEEecCC
Q psy10573 114 -FWLRHLLLTNPHGSTRVIQSCWTK-------E-----EYNSWLLDQLVPGG-RMVMPVGEP 161 (206)
Q Consensus 114 -d~~~~~~~~~~~~~~D~i~~~~~~-------~-----~~~~~~~~~L~~gG-~l~~~~~~~ 161 (206)
|+.+ . ....+|+|+++.+. + ..++-+.+.|+||| .|++-++.+
T Consensus 130 ~Df~~---~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 130 VDVFY---K--PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCGGG---S--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCccC---C--CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 7433 1 33456999998652 1 14566678999999 999988885
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=61.55 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
.+...+++.. -.++..|||++||+|..+..+++.. .+++|+|+++.+++.+++++..
T Consensus 223 ~l~~~~i~~~---~~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 223 ELAERLVRMF---SFVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHH---CCTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 4556666555 3678999999999999999887643 3999999999999999999875
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00012 Score=55.27 Aligned_cols=112 Identities=15% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-cc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~ 115 (206)
...+.+.. .+.++..|+|+||++|.++.+++...+.. +|+++|+...--+ .....+..+-+.++|+.+ |+
T Consensus 67 L~ei~ek~--~l~~g~~VvDLGaapGGWSq~~a~~~g~~-~V~avdvG~~ghe------~P~~~~s~gwn~v~fk~gvDv 137 (267)
T 3p8z_A 67 LQWFVERN--MVIPEGRVIDLGCGRGGWSYYCAGLKKVT-EVRGYTKGGPGHE------EPVPMSTYGWNIVKLMSGKDV 137 (267)
T ss_dssp HHHHHHTT--SSCCCEEEEEESCTTSHHHHHHHTSTTEE-EEEEECCCSTTSC------CCCCCCCTTTTSEEEECSCCG
T ss_pred HHHHHHhc--CCCCCCEEEEcCCCCCcHHHHHHHhcCCC-EEEEEecCCCCcc------CcchhhhcCcCceEEEeccce
Confidence 34444444 36889999999999999999888776433 8999998653220 000011123356899988 73
Q ss_pred ccccccCCCCCCeeEEEecCCh-------H-----HHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK-------E-----EYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~-------~-----~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
. .++...+|+|+|+-.- + ..++-+.+.|++ |-+++-+.++..
T Consensus 138 ~-----~~~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 138 F-----YLPPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp G-----GCCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred e-----ecCCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 2 1234556999997552 1 144556678888 788888888764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00028 Score=55.05 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcc------cCchHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 48 IKPGARILDIGS------GSGYLTACLAYMAGPE-GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~------G~G~~~~~l~~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
++-+.+|||+|+ .+|.. +++...+. +.++++|+.+-.. ... .++++|... .
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p~g~~VVavDL~~~~s----------------da~-~~IqGD~~~-~- 164 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA---VLRQWLPTGTLLVDSDLNDFVS----------------DAD-STLIGDCAT-V- 164 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH---HHHHHSCTTCEEEEEESSCCBC----------------SSS-EEEESCGGG-E-
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH---HHHHhCCCCcEEEEeeCccccc----------------CCC-eEEEccccc-c-
Confidence 467899999997 56663 33334465 5999999977221 122 458888422 1
Q ss_pred cCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCCCCe
Q psy10573 121 LTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPFKGQ 165 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~~~~ 165 (206)
. ..+.||+|+++... +..++-+.+.|+|||.|++-++.+...+
T Consensus 165 ~--~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~ 224 (344)
T 3r24_A 165 H--TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNA 224 (344)
T ss_dssp E--ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCH
T ss_pred c--cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHH
Confidence 1 23567999997542 3455677889999999999999887533
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00016 Score=56.35 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-cc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~ 115 (206)
...+.+.. .+.++..||||||++|.++.+++...+. ..|+++|+...--+ .....+..+-+-+.++.. |+
T Consensus 83 L~ei~~~~--~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he------~P~~~~ql~w~lV~~~~~~Dv 153 (321)
T 3lkz_A 83 LRWLVERR--FLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHE------EPQLVQSYGWNIVTMKSGVDV 153 (321)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSC------CCCCCCBTTGGGEEEECSCCT
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCcc------CcchhhhcCCcceEEEeccCH
Confidence 34444442 3688899999999999999988776543 38999998653110 000000011133667665 52
Q ss_pred ccccccCCCCCCeeEEEecCCh-------H-----HHHHHHHhcccCC-cEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK-------E-----EYNSWLLDQLVPG-GRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~-------~-----~~~~~~~~~L~~g-G~l~~~~~~~~ 162 (206)
. .++...+|+|+|+-+- + .+++-+.+.|+++ |-+++-+..+.
T Consensus 154 ~-----~l~~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 154 F-----YRPSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp T-----SSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred h-----hCCCCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 1 1234556999997551 1 1445556778888 89998888874
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=54.68 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..+.+.+++.. ..++..|||..||+|+.+..+.+.. .+++|+|+++..++.+++++..
T Consensus 199 ~~l~~~~i~~~---~~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 199 RDLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHh
Confidence 34555666554 4788999999999999999887643 3999999999999999999875
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.53 E-value=4.3e-05 Score=59.56 Aligned_cols=114 Identities=15% Similarity=0.003 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+.+.+.. -.+..+||+-+|||.++..+.+.. .+++.+|.++...+..++++.. ..++.++..|
T Consensus 78 ~~l~~yf~~l~~--~n~~~~LDlfaGSGaLgiEaLS~~---d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D 145 (283)
T 2oo3_A 78 SLFLEYISVIKQ--INLNSTLSYYPGSPYFAINQLRSQ---DRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTD 145 (283)
T ss_dssp GGGHHHHHHHHH--HSSSSSCCEEECHHHHHHHHSCTT---SEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSC
T ss_pred HHHHHHHHHHHH--hcCCCceeEeCCcHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCc
Confidence 334455555543 235678999999999999998732 4999999999999999988864 2579999999
Q ss_pred cccccc-cCCCCCCeeEEEecCChH------HHHHHHHh--cccCCcEEEEEecC
Q psy10573 115 WLRHLL-LTNPHGSTRVIQSCWTKE------EYNSWLLD--QLVPGGRMVMPVGE 160 (206)
Q Consensus 115 ~~~~~~-~~~~~~~~D~i~~~~~~~------~~~~~~~~--~L~~gG~l~~~~~~ 160 (206)
...... +.-+...||+|+++++.+ .+++.+.+ .+.++|++++.-+-
T Consensus 146 ~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 146 GVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp HHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 322111 101234689999999875 13333333 34689988887554
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=52.72 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
.+.++.+||.+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. |+.+. ...
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGAT-----------HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHcCCC-----------EEecCCccCHHHHHHHh
Confidence 368899999999886 8888888887642 2699999999998888754211 11211 11111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.++.+|+|+........++...+.|+++|+++....
T Consensus 255 --~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 255 --TDGGVNFALESTGSPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp --TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCC
T ss_pred --cCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 223679999988776777889999999999987643
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0079 Score=46.28 Aligned_cols=113 Identities=13% Similarity=0.025 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHH---h---CCCceEEEEe-----CCHH-------------------HHHHHHHhhh-
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYM---A---GPEGRVYGVE-----HVME-------------------LAESSIKNID- 96 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~---~---~~~~~v~~iD-----~s~~-------------------~~~~a~~~~~- 96 (206)
..-...|+|+|+-.|..+..++.. + ++..+++++| ..+. ..+..++.+.
T Consensus 67 ~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 67 LDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp TTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred hCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 355679999999999988886542 2 3456999998 2210 0011111111
Q ss_pred --ccCccccCCCceEEEEccccccccc---CCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEEecC
Q psy10573 97 --KGNSELLDQGRVQFVAYFWLRHLLL---TNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 97 --~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~~ 160 (206)
....-.....+++++.+++.+..+- ..+.+.+|++.++..... .++.+...|+|||+|++--++
T Consensus 147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 147 HECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp HHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred HhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 0000001136899999995443321 125567899999988632 568889999999999987664
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0024 Score=51.52 Aligned_cols=101 Identities=15% Similarity=0.013 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-----ccccccc-c
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-----YFWLRHL-L 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-----~d~~~~~-~ 120 (206)
+.++.+||-+|+|. |..+..+++..+. ..|+++|.+++..+.+++. .. .-+.+.. .|+.+.. .
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l-~~--------~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI-CP--------EVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH-CT--------TCEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-ch--------hcccccccccchHHHHHHHHH
Confidence 78899999999875 8888888887643 1499999999999999876 32 1122221 1111111 1
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+|+....-...++.+.+.|+++|+++....
T Consensus 247 ~-t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 247 S-FGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp H-TSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCC
T ss_pred H-hCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEcc
Confidence 1 1234679999988877777889999999999987644
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00096 Score=53.39 Aligned_cols=98 Identities=16% Similarity=0.053 Sum_probs=68.6
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLT 122 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~ 122 (206)
.+.++.+||-.|+|. |..+..+++..+ .+|+++|.+++..+.+++.-.. .++.. |+.+...-
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~~i~~~~~~~~~~~~~- 228 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRLGAE-----------VAVNARDTDPAAWLQK- 228 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHH-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCC-----------EEEeCCCcCHHHHHHH-
Confidence 368899999999985 888888888764 4999999999999888763211 11211 11111000
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+++....-...++.+.+.|+++|+++....
T Consensus 229 -~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 229 -EIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp -HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSC
T ss_pred -hCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCC
Confidence 112569999887767778889999999999987643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.001 Score=53.47 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=69.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-+|+|. |..+..+++..+. .+|+++|.++..++.+++.-.. .++.. |+.+. ...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~v~~~- 230 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIALEYGAT-----------DIINYKNGDIVEQILKA- 230 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHHHHTCC-----------EEECGGGSCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHhCCc-----------eEEcCCCcCHHHHHHHH-
Confidence 78899999999885 7788888876542 2799999999988888764221 12211 11111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.....+|+|+....-...++.+.+.|+++|+++.....
T Consensus 231 t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 231 TDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp TTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred cCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEeccc
Confidence 12336799998777767778899999999999876543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0028 Score=51.05 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE------cccccc-c
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA------YFWLRH-L 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~------~d~~~~-~ 119 (206)
+.++.+||-+|+|. |..+..+++..+. .+|+++|.++..++.+++.-. . .++. .++.+. .
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~lGa---------~--~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIGA---------D--LVLQISKESPQEIARKVE 236 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTC---------S--EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHhCC---------C--EEEcCcccccchHHHHHH
Confidence 78899999999885 7888888876542 289999999998888875321 1 1111 111111 0
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. .. ..+|+|+........++...+.|+++|+++....
T Consensus 237 ~~-~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 237 GQ-LG-CKPEVTIECTGAEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HH-HT-SCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred HH-hC-CCCCEEEECCCChHHHHHHHHHhcCCCEEEEEec
Confidence 11 02 4569999988777677888999999999987643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0026 Score=51.56 Aligned_cols=100 Identities=21% Similarity=0.122 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---cccccc-cc-c
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFWLRH-LL-L 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~~~~-~~-~ 121 (206)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.++...+.+++.-.. .++. .|+.+. .. .
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~i~~~~ 247 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEEVGAT-----------ATVDPSAGDVVEAIAGPV 247 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHTCS-----------EEECTTSSCHHHHHHSTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCC-----------EEECCCCcCHHHHHHhhh
Confidence 78999999999875 7888888877642 2899999999988888763221 1111 111111 11 0
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+-++.+|+|+....-...++.+.+.|+++|++++...
T Consensus 248 ~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 248 GLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp SSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSC
T ss_pred hccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEec
Confidence 01334789999888767778889999999999987643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0054 Score=49.00 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-+|+|. |..+..+++.. ...+|+++|.+++.++.+++.-.. .-+.....|..+. ... ...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~Ga~--------~~i~~~~~~~~~~v~~~-t~g 230 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKIGAD--------VTINSGDVNPVDEIKKI-TGG 230 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHTTCS--------EEEEC-CCCHHHHHHHH-TTS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhcCCe--------EEEeCCCCCHHHHhhhh-cCC
Confidence 68899999999986 45555556554 345999999999988888764332 0111111221111 111 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+|.++....-...+....+.|+++|++++....
T Consensus 231 ~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~ 265 (348)
T 4eez_A 231 LGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVP 265 (348)
T ss_dssp SCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred CCceEEEEeccCcchhheeheeecCCceEEEEecc
Confidence 35688888777777788899999999998876443
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0067 Score=49.00 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCeEEEEc-ccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--ccccccccCCCC
Q psy10573 50 PGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLRHLLLTNPH 125 (206)
Q Consensus 50 ~~~~vLDlG-~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~ 125 (206)
++.+||-.| +|. |..+..+++.. ...+|++++.+++.++.+++.-.. .++.. ++.+... .+..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~lGad-----------~vi~~~~~~~~~v~-~~~~ 237 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKSLGAH-----------HVIDHSKPLAAEVA-ALGL 237 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHTTCS-----------EEECTTSCHHHHHH-TTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHcCCC-----------EEEeCCCCHHHHHH-HhcC
Confidence 778999998 554 88888888864 235999999999988888753211 11111 1111111 1234
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+.+|+|+....-...++.+.+.|+++|+++..
T Consensus 238 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 238 GAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCceEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence 57899999888777788899999999999876
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0021 Score=52.63 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---cc-cccc-cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FW-LRHL-LL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~-~~~~-~~ 121 (206)
+.++.+||.+|+|. |..+..+++..+. .+|+++|.+++.++.+++.- .+++.. |. .+.. ..
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~lG------------a~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSDAG------------FETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHTTT------------CEEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcC------------CcEEcCCCcchHHHHHHHH
Confidence 78899999999986 8888888887642 28999999999888886421 122221 11 1110 01
Q ss_pred CCCCCCeeEEEecCChH--------------HHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~ 158 (206)
.....+|+|+....-. ..++...+.|+++|++++.-
T Consensus 250 -~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 250 -LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp -HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred -hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 0222579999876643 26788899999999987654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0085 Score=47.90 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=70.4
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--ccccc-cccC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLRH-LLLT 122 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~~-~~~~ 122 (206)
.+.++.+||-+|+|. |..+..+++..+ ..+|+++|.+++.++.+++.-.. .++.. ++.+. ...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~lGa~-----------~~i~~~~~~~~~v~~~- 234 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAREVGAD-----------AAVKSGAGAADAIREL- 234 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHHTTCS-----------EEEECSTTHHHHHHHH-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCCC-----------EEEcCCCcHHHHHHHH-
Confidence 378899999999975 888888887763 35999999999999988763211 11211 21111 000
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.....+|+|+....-...++.+.+.|+++|+++.....
T Consensus 235 t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 235 TGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp HGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCC
T ss_pred hCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence 01225699999888777888999999999999876443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0077 Score=48.83 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-LL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~~ 120 (206)
+.++.+||-+|+|. |..+..+++..+- .+|+++|.+++.++.+++.-.. .++.. ++.+. ..
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAKKFGVN-----------EFVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHHTTTCC-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHcCCc-----------EEEccccCchhHHHHHHH
Confidence 67899999999985 8888888887652 2799999999998888753211 11211 11111 11
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
. .++.+|+|+....-...++.+.+.|+++ |++++...
T Consensus 259 ~--~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 259 L--TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp H--TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred h--cCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcc
Confidence 1 2346799999888777888999999997 99887654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=53.12 Aligned_cols=76 Identities=20% Similarity=0.041 Sum_probs=51.5
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
.+++|+.||.|.++..+......-..++++|+++.+++..+.++.. ..++.+|..+...-.++...+|++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~----------~~~~~~Di~~~~~~~~~~~~~D~l 72 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----------TQLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECSCGGGCCHHHHHHHCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc----------cccccCCHHHccHhHcCcCCcCEE
Confidence 5799999999999999876531112689999999999999988743 335566732211100011245999
Q ss_pred EecCCh
Q psy10573 132 QSCWTK 137 (206)
Q Consensus 132 ~~~~~~ 137 (206)
+.++++
T Consensus 73 ~~gpPC 78 (343)
T 1g55_A 73 LMSPPC 78 (343)
T ss_dssp EECCC-
T ss_pred EEcCCC
Confidence 998885
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.004 Score=51.30 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=43.0
Q ss_pred CCCCCeEEEEcccCchHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 48 IKPGARILDIGSGSGYLTACLA-YMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~-~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.++..++|+|++.|.++..++ +..++.++|+++|+++...+..++++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4688999999999999999888 4443446999999999999999998875
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0062 Score=48.86 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE----cccccc-ccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA----YFWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~----~d~~~~-~~~ 121 (206)
+.++.+||-.|+|. |..+..+++..+ .+|+++|.+++.++.+++.-. . .++. .++.+. ...
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa---------~--~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGA---------D--VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTC---------S--EEEECCTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCC---------C--EEEcCcccccHHHHHHHH
Confidence 78899999999875 777788887654 479999999998888875321 1 1111 111110 000
Q ss_pred CCC---CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNP---HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~---~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. ...+|+|+........++...+.|+++|+++....
T Consensus 233 -~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 233 -IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp -HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred -hccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 01 23569999988777677888999999999987643
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00056 Score=67.85 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=53.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGP----EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNP 124 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 124 (206)
.+..+|||+|.|+|..+..+.+.++. ..+++.+|+|+...+.+++++... ++..-..|.....++ .
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------di~~~~~d~~~~~~~--~ 1308 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------HVTQGQWDPANPAPG--S 1308 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--------TEEEECCCSSCCCC----
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--------ccccccccccccccC--C
Confidence 45679999999999887776665532 125677899998888888776531 122211121111122 3
Q ss_pred CCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEe
Q psy10573 125 HGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~ 158 (206)
.++||+|++...++. .+.+++++|+|||.+++..
T Consensus 1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1309 LGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp ---CCEEEEECC--------------------CCEEEEEE
T ss_pred CCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 456799999877653 5678899999999988754
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0086 Score=47.24 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=61.3
Q ss_pred CCCeEEEEcccCchHHHHHH---HHhCCCceE--EEEeCCH--------H-HHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 50 PGARILDIGSGSGYLTACLA---YMAGPEGRV--YGVEHVM--------E-LAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~---~~~~~~~~v--~~iD~s~--------~-~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+.-+|+|+|-|+|....... ...++..++ +++|..+ . ..+..+..+.....-..+.-.++++.+|.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34689999999998654332 233455555 5566422 1 11111111111000001112356777884
Q ss_pred ccccccCCCCCCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+..+ .+.+..+|+++.++-. ..+++.+.++++|||+++..+..
T Consensus 176 ~~~l~-~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa 228 (308)
T 3vyw_A 176 RKRIK-EVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS 228 (308)
T ss_dssp HHHGG-GCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC
T ss_pred HHHHh-hhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc
Confidence 44333 1355678999997532 34789999999999988654443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.02 Score=45.63 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=67.8
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---cccccc-cc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHL-LL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~-~~ 121 (206)
...++.+||-.|+|. |..+..+++..+. ..++++|.++..++.+++.-.. .++.. |..+.. ..
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~~lGa~-----------~~i~~~~~~~~~~~~~~ 224 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDISSEKLALAKSFGAM-----------QTFNSSEMSAPQMQSVL 224 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHHH
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCC-cEEEEEechHHHHHHHHHcCCe-----------EEEeCCCCCHHHHHHhh
Confidence 368899999999985 6677777777643 2678899999998888764221 12211 111100 00
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.....+|+|+........++...++|+++|.+++....
T Consensus 225 -~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 225 -RELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp -GGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred -cccCCcccccccccccchhhhhhheecCCeEEEEEecc
Confidence 01234599998887777888899999999999876443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0041 Score=50.68 Aligned_cols=74 Identities=16% Similarity=-0.066 Sum_probs=52.8
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc--c---CCCCC
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL--L---TNPHG 126 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~---~~~~~ 126 (206)
.+++|+.||.|.++..+..... ..+.++|+++.+.+..+.++. +..++.+|..+... + .+..+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~----------~~~~~~~DI~~~~~~~~~~~~~~~~ 70 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP----------RSLHVQEDVSLLNAEIIKGFFKNDM 70 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT----------TSEEECCCGGGCCHHHHHHHHCSCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC----------CCceEecChhhcCHHHHHhhcccCC
Confidence 5799999999999999876542 156799999999998887753 35667777322111 0 01345
Q ss_pred CeeEEEecCCh
Q psy10573 127 STRVIQSCWTK 137 (206)
Q Consensus 127 ~~D~i~~~~~~ 137 (206)
.+|+|+..+++
T Consensus 71 ~~D~i~ggpPC 81 (376)
T 3g7u_A 71 PIDGIIGGPPC 81 (376)
T ss_dssp CCCEEEECCCC
T ss_pred CeeEEEecCCC
Confidence 67999998885
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0075 Score=48.31 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=67.7
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.+.++.+||-+|+|. |..+..+++..+ .+|++++.+++..+.+++.-. .. ++ .+ .+ .+ ..
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa---------~~--v~-~~-~~--~~--~~ 233 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALSMGV---------KH--FY-TD-PK--QC--KE 233 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHHTTC---------SE--EE-SS-GG--GC--CS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhcCC---------Ce--ec-CC-HH--HH--hc
Confidence 378899999999985 888888887764 489999999998888875311 11 22 23 11 11 22
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|+|+....-...++...+.|+++|+++.....
T Consensus 234 -~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 234 -ELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp -CEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCC
T ss_pred -CCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCC
Confidence 5799998776665668888999999999877443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.003 Score=46.31 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=62.0
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--cccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~~-~~ 120 (206)
.+.++.+||..|+ |.|..+..+++..+ .+|++++.+++..+.+++. . . . ..+.. + ..+. ..
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~-g--------~-~-~~~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRL-G--------V-E-YVGDSRSVDFADEILE 101 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTT-C--------C-S-EEEETTCSTHHHHHHH
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-C--------C-C-EEeeCCcHHHHHHHHH
Confidence 3678999999994 34666666666554 4899999998877766542 1 0 1 11111 1 1110 01
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. ...+.+|+++.+.. ....+.+.+.|+++|+++....
T Consensus 102 ~-~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 102 L-TDGYGVDVVLNSLA-GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp H-TTTCCEEEEEECCC-THHHHHHHHTEEEEEEEEECSC
T ss_pred H-hCCCCCeEEEECCc-hHHHHHHHHHhccCCEEEEEcC
Confidence 1 12346799998776 3566888899999999887643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0047 Score=50.00 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=68.2
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. ++.+. .
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGAT-----------ECLNPKDYDKPIYEVIC 255 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHcCCc-----------EEEecccccchHHHHHH
Confidence 368899999999875 7888888877642 2799999999988888753211 11111 11110 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. ..+.+|+|+....-...++...+.|+++ |+++....
T Consensus 256 ~~--t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 256 EK--TNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HH--TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred HH--hCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEcc
Confidence 11 2236799999887767778899999999 99887643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0073 Score=48.09 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.+.+.+++.. ..++..|||..||+|+.+..+.+.. .+.+|+|+++...+.+++++..
T Consensus 239 ~~l~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 239 AKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp THHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 34666666554 4789999999999999988876543 3999999999999999999875
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.009 Score=48.35 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=66.2
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNP 124 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~ 124 (206)
.+.++.+||-+|+|. |..+..+++..+ .+|++++.+++.++.+++.-.. .++...-.+ .... .
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~--~ 255 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGAD-----------EVVNSRNADEMAAH--L 255 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCS-----------EEEETTCHHHHHTT--T
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCc-----------EEeccccHHHHHHh--h
Confidence 378899999999885 777788887654 4799999999998888753111 122111011 0111 2
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+.+|+|+....-...++...+.|+++|+++....
T Consensus 256 -~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 256 -KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCC
T ss_pred -cCCCEEEECCCCHHHHHHHHHHhccCCEEEEecc
Confidence 4679999877655556778899999999876543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0033 Score=50.25 Aligned_cols=98 Identities=15% Similarity=0.061 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cc
Q psy10573 47 KIKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~ 120 (206)
.+.++.+||-.|+| .|..+..+++..+ ++|++++.+++.++.+++.-.. ..+.. ++.+. ..
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lga~-----------~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLRLGAA-----------YVIDTSTAPLYETVME 207 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCS-----------EEEETTTSCHHHHHHH
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhCCCc-----------EEEeCCcccHHHHHHH
Confidence 36889999999987 4777777777664 4899999999888888763211 11111 11111 11
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+++.+..-....+ ..+.|+++|+++....
T Consensus 208 ~-~~~~g~Dvvid~~g~~~~~~-~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 208 L-TNGIGADAAIDSIGGPDGNE-LAFSLRPNGHFLTIGL 244 (340)
T ss_dssp H-TTTSCEEEEEESSCHHHHHH-HHHTEEEEEEEEECCC
T ss_pred H-hCCCCCcEEEECCCChhHHH-HHHHhcCCCEEEEEee
Confidence 1 13346799999888766544 4489999999987644
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0032 Score=51.23 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc------ccccc-c
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY------FWLRH-L 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~------d~~~~-~ 119 (206)
+.++.+||-.|+|. |..+..+++..+ ..+|++++.+++.++.+++.-. . .++.. |+.+. .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGA---------D--LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTC---------S--EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHcCC---------c--EEEeccccCcchHHHHHH
Confidence 67889999999774 777788887653 1389999999998888874211 1 11211 11111 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. .....+|+|+........++...+.|+++|+++....
T Consensus 261 ~~-~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 261 DI-THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp HH-TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred HH-hCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 11 1223579999887766677888999999999887643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.019 Score=46.32 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=68.0
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. ++.+. .
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGAT-----------ECINPQDFSKPIQEVLI 254 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCS-----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHcCCc-----------eEeccccccccHHHHHH
Confidence 367899999999875 7788888877642 2799999999998888753211 11111 11110 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. ..+.+|+|+........++.+.+.|+++ |+++....
T Consensus 255 ~~--~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 255 EM--TDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp HH--TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HH--hCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEec
Confidence 11 2236799999887766778899999999 99987643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0079 Score=48.51 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=67.0
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
.+.++.+||-+|+|. |..+..+++..+ .++++++.+++.++.+++.-.. .++.. |+.+. ...
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~v~~~ 252 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFALGAD-----------HGINRLEEDWVERVYAL 252 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHcCCC-----------EEEcCCcccHHHHHHHH
Confidence 368899999999885 778888887654 4999999999988888663211 12221 11111 011
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.....+|+|+.... ...++.+.+.|+++|+++.....
T Consensus 253 -~~g~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 253 -TGDRGADHILEIAG-GAGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp -HTTCCEEEEEEETT-SSCHHHHHHHEEEEEEEEEECCC
T ss_pred -hCCCCceEEEECCC-hHHHHHHHHHhhcCCEEEEEecC
Confidence 12336799998776 44567788999999999877443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.022 Score=45.49 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCeEEEE-cccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--ccccc-cccCCC
Q psy10573 50 PGARILDI-GSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLRH-LLLTNP 124 (206)
Q Consensus 50 ~~~~vLDl-G~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~~-~~~~~~ 124 (206)
++.+||-. |+|. |..+..+++..+ ++|++++.+++.++.+++.-.. .++.. ++.+. ... .
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~--~ 214 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKMGAD-----------IVLNHKESLLNQFKTQ--G 214 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHHHTCS-----------EEECTTSCHHHHHHHH--T
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCc-----------EEEECCccHHHHHHHh--C
Confidence 78999988 4553 778888887654 5999999999988888763211 11111 11111 111 3
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
...+|+|+....-...++.+.+.|+++|+++...
T Consensus 215 ~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 215 IELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESS
T ss_pred CCCccEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence 3467999998887777788999999999997653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0059 Score=48.83 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE----cccccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA----YFWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~----~d~~~~~~~~ 122 (206)
+ ++.+||-+|+|. |..+..+++...++.+|++++.+++.++.+++.-.. .++. .|+.. ..
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~--~~- 233 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-----------YVSEMKDAESLIN--KL- 233 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-----------EEECHHHHHHHHH--HH-
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-----------EEeccccchHHHH--Hh-
Confidence 6 899999999975 777888887762235899999999988888753211 1121 11111 11
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+|+........++.+.+.|+++|+++....
T Consensus 234 ~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 234 TDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp HTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCC
Confidence 0122579999988877677889999999999887643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0063 Score=49.28 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=67.2
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.++..++.+++.-.. .++.. ++.+. .
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKVFGAT-----------DFVNPNDHSEPISQVLS 256 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCC-----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhCCc-----------eEEeccccchhHHHHHH
Confidence 367899999999875 7777888876542 2799999999998888753211 11111 11110 0
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. ..+.+|+|+........++.+.+.|+++ |+++....
T Consensus 257 ~~--~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 257 KM--TNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HH--HTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HH--hCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcC
Confidence 11 1236799999887767778899999999 99887643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0049 Score=50.33 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF----WLRHL-L 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d----~~~~~-~ 120 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.- .+.+... +.+.. .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~lG------------a~~i~~~~~~~~~~~v~~ 248 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQG------------FEIADLSLDTPLHEQIAA 248 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT------------CEEEETTSSSCHHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHcC------------CcEEccCCcchHHHHHHH
Confidence 378899999999875 8888888887642 27999999999988886531 1222211 11100 0
Q ss_pred cCCCCCCeeEEEecCChH---------------HHHHHHHhcccCCcEEEEEe
Q psy10573 121 LTNPHGSTRVIQSCWTKE---------------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~gG~l~~~~ 158 (206)
. .....+|+|+...... ..++...+.|+++|++++..
T Consensus 249 ~-t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 249 L-LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp H-HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred H-hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 1 0223579999876643 36788899999999997654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=46.69 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH---HHHHHHHHhhhc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM---ELAESSIKNIDK 97 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~---~~~~~a~~~~~~ 97 (206)
+.+.+.+++.. ..++..|||..||+|+.+..+.... .+.+|+|+++ ...+.+++++..
T Consensus 229 ~~l~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 229 AAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHHH
Confidence 45666666665 4788999999999999998887653 3899999999 999999998865
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0061 Score=48.34 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=66.3
Q ss_pred cCCCCCeEEEEc-cc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--cccc-cc
Q psy10573 47 KIKPGARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG-~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~~-~~ 120 (206)
.+.++.+||-.| +| .|..+..+++..+ .+|++++.+++.++.+++.-.. ..+.. + +.+. ..
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~Ga~-----------~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKALGAW-----------ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCC-----------EEEeCCCccHHHHHHH
Confidence 367899999998 44 4788888887764 4899999999988888753211 11111 1 1111 01
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. .....+|+++.+..- ..++...+.|+++|+++.....
T Consensus 204 ~-~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 204 L-TDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp H-TTTCCEEEEEESSCG-GGHHHHHTTEEEEEEEEECCCT
T ss_pred H-hCCCCceEEEECCCh-HHHHHHHHHhcCCCEEEEEecC
Confidence 1 133467999987776 4567888999999999877543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0089 Score=48.35 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=67.2
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. ++.+. .
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKEVGAT-----------ECVNPQDYKKPIQEVLT 255 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCCc-----------eEecccccchhHHHHHH
Confidence 367899999999875 7777888876542 2799999999988888653111 11111 11110 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. .++.+|+|+........++...+.|+++ |+++....
T Consensus 256 ~~--~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 256 EM--SNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp HH--TTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred HH--hCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEecc
Confidence 11 2236799999887766778889999999 99887643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0071 Score=48.98 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. ++.+. .
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGAT-----------DCLNPRELDKPVQDVIT 259 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCCc-----------EEEccccccchHHHHHH
Confidence 367899999999875 7788888877642 2799999999988888653211 11111 11110 0
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. ..+.+|+|+....-...++.+.+.|+++ |+++....
T Consensus 260 ~~--~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 260 EL--TAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HH--HTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred HH--hCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC
Confidence 11 1236799998887767778899999999 99987644
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.022 Score=45.27 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+||-.|+ |.|..+..+++..+ .+|++++.+++.++.+.+.+.. . ..+.. ++.+. ...
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~~g~--------~--~~~~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVEELGF--------D--GAIDYKNEDLAAGLKRE 214 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCC--------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHcCC--------C--EEEECCCHHHHHHHHHh
Confidence 788999999998 34777777777654 4999999999888887333321 1 11111 11111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++.+..- ..++.+.+.|+++|+++...
T Consensus 215 --~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 215 --CPKGIDVFFDNVGG-EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp --CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEECC
T ss_pred --cCCCceEEEECCCc-chHHHHHHHHhhCCEEEEEe
Confidence 23467999988775 46788889999999998764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0095 Score=48.80 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=65.3
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.++..++.+++.-.. .++.. |+.+. ...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~i~~~ 277 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSEVRRNLAKELGAD-----------HVIDPTKENFVEAVLDY 277 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHTCS-----------EEECTTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCC-----------EEEcCCCCCHHHHHHHH
Confidence 367899999999875 7777888876642 2899999999999888764221 11211 11111 111
Q ss_pred CCCCCCeeEEEecCChH-HHHHHHHhcc----cCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWTKE-EYNSWLLDQL----VPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~-~~~~~~~~~L----~~gG~l~~~~~~ 160 (206)
.....+|+|+....-. ...+.+.+.| +++|+++.....
T Consensus 278 -t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 278 -TNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp -TTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred -hCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 1233579999876655 3455555566 999999876443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.008 Score=47.83 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=65.0
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cc
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~ 120 (206)
.+.++.+||-.|+ | .|..+..+++..+ .++++++.+++.++.+++.-.. .++.. ++.+. ..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~ga~-----------~~~~~~~~~~~~~~~~ 211 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAKEYGAE-----------YLINASKEDILRQVLK 211 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCc-----------EEEeCCCchHHHHHHH
Confidence 3688999999983 4 4777777777654 5899999999888877653211 11211 11111 01
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+++.+..- ..++.+.+.|+++|+++....
T Consensus 212 ~-~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 212 F-TNGKGVDASFDSVGK-DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp H-TTTSCEEEEEECCGG-GGHHHHHHHEEEEEEEEECCC
T ss_pred H-hCCCCceEEEECCCh-HHHHHHHHHhccCCEEEEEcC
Confidence 1 123467999987775 566788899999999987643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0069 Score=48.37 Aligned_cols=96 Identities=18% Similarity=0.037 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-+|+|. |..+..+++..+ .+|++++.+++.++.+++.-. . .++.. |+.+. ...
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lGa---------~--~~~d~~~~~~~~~~~~~- 227 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGA---------D--LVVNPLKEDAAKFMKEK- 227 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC---------S--EEECTTTSCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHCCC---------C--EEecCCCccHHHHHHHH-
Confidence 78899999999874 777777777654 499999999998888865211 1 11111 11110 011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. +.+|+++........++...+.|+++|+++....
T Consensus 228 -~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 228 -V-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp -H-SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred -h-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecc
Confidence 1 3569999988876777888999999999886643
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0086 Score=47.97 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+ ++.+||-+|+|. |..+..+++..+ . +|++++.+++.++.+++.-.. .++.. ++.+. ...
T Consensus 166 ~-~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~~Ga~-----------~~~~~~~~~~~~~v~~~ 231 (348)
T 2d8a_A 166 I-SGKSVLITGAGPLGLLGIAVAKASG--AYPVIVSEPSDFRRELAKKVGAD-----------YVINPFEEDVVKEVMDI 231 (348)
T ss_dssp C-TTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHHHHHHHTCS-----------EEECTTTSCHHHHHHHH
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC-----------EEECCCCcCHHHHHHHH
Confidence 5 889999999864 777777777654 4 899999999888888653211 11111 11111 011
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+|+........++.+.+.|+++|+++....
T Consensus 232 -~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 232 -TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp -TTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred -cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 1223579999988876777888999999999887643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.024 Score=44.67 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ ++|++++ +++..+.+++.-.. .++ .| .+ .+ .+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~lGa~-----------~v~-~d-~~----~v-~~ 198 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAKRGVR-----------HLY-RE-PS----QV-TQ 198 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHHHTEE-----------EEE-SS-GG----GC-CS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHHcCCC-----------EEE-cC-HH----Hh-CC
Confidence 68899999999974 888888888765 4999999 88888888763211 122 13 11 11 45
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|+|+....-... ..+.+.|+++|+++...
T Consensus 199 g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 199 KYFAIFDAVNSQNA-AALVPSLKANGHIICIQ 229 (315)
T ss_dssp CEEEEECC--------TTGGGEEEEEEEEEEC
T ss_pred CccEEEECCCchhH-HHHHHHhcCCCEEEEEe
Confidence 67999987665444 66789999999998773
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.011 Score=47.63 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=65.7
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc-cc-cccCC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL-RH-LLLTN 123 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~-~~-~~~~~ 123 (206)
.+.++.+||-+|+|. |..+..+++..+ .+|++++.++..++.+++.-.. .++...-. +. ...
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~v~~~~~~~~~~~~~-- 240 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGAD-----------HYIATLEEGDWGEKY-- 240 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCS-----------EEEEGGGTSCHHHHS--
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCC-----------EEEcCcCchHHHHHh--
Confidence 378899999999874 777888887765 4899999999888888763211 12211101 10 111
Q ss_pred CCCCeeEEEecCCh--HHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. +.+|+|+..... ...++.+.+.|+++|+++....
T Consensus 241 ~-~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 241 F-DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp C-SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCC
T ss_pred h-cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecC
Confidence 2 467999987665 4555677899999999876543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.026 Score=45.09 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=66.1
Q ss_pred cCCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--ccc-cccc
Q psy10573 47 KIKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLR-HLLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~-~~~~ 121 (206)
.+.++.+||-.|+| .|..+..+++.. .+.+|+++|.+++.++.+++. .. ...+-..+ ..+ ....
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~~-g~---------~~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA-GA---------DYVINASMQDPLAEIRRI 235 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH-TC---------SEEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh-CC---------CEEecCCCccHHHHHHHH
Confidence 37889999999988 356666666665 135899999999888887643 11 11111111 100 0111
Q ss_pred CCCC-CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPH-GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~-~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. +.+|+++.+..-...++...+.|+++|+++....
T Consensus 236 --~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 236 --TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp --TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCS
T ss_pred --hcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECC
Confidence 22 4789999988877677888999999999887543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.011 Score=47.19 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~ 120 (206)
.+.++.+||-.|+ |.|..+..+++..+ .++++++.+++.++.+++. .. . .++.. ++.+. ..
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~-ga--------~--~~~d~~~~~~~~~~~~ 229 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKAL-GA--------D--ETVNYTHPDWPKEVRR 229 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH-TC--------S--EEEETTSTTHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhc-CC--------C--EEEcCCcccHHHHHHH
Confidence 3678999999998 45777777777654 4899999999888888642 11 1 11111 11111 01
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+++.+.. ...++.+.+.|+++|+++....
T Consensus 230 ~-~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 230 L-TGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp H-TTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSC
T ss_pred H-hCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEEec
Confidence 1 12346799999887 5667888899999999877643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.033 Score=44.37 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=64.8
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc----ccccc-c
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~----d~~~~-~ 119 (206)
.+.++.+||-.|+ |.|..+..+++..+ ++|++++.+++.++.+++.+.. . ..+.. ++.+. .
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~~g~--------~--~~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKTKFGF--------D--DAFNYKEESDLTAALK 219 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTSCC--------S--EEEETTSCSCSHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHcCC--------c--eEEecCCHHHHHHHHH
Confidence 3678999999997 35777777776654 5899999999888887643321 1 11111 11110 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. ..+.+|+++.+..- ..++...+.|+++|++++..
T Consensus 220 ~~--~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 220 RC--FPNGIDIYFENVGG-KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HH--CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEECC
T ss_pred HH--hCCCCcEEEECCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 11 12467999998876 46788899999999998753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.037 Score=44.43 Aligned_cols=95 Identities=16% Similarity=0.044 Sum_probs=64.2
Q ss_pred CCCC------CeEEEEcccC-chHH-HHHH-HHhCCCce-EEEEeCCHH---HHHHHHHhhhccCccccCCCceEEEEc-
Q psy10573 48 IKPG------ARILDIGSGS-GYLT-ACLA-YMAGPEGR-VYGVEHVME---LAESSIKNIDKGNSELLDQGRVQFVAY- 113 (206)
Q Consensus 48 ~~~~------~~vLDlG~G~-G~~~-~~l~-~~~~~~~~-v~~iD~s~~---~~~~a~~~~~~~~~~~~~~~~i~~~~~- 113 (206)
+.++ .+||-+|+|. |..+ ..++ +..+ .+ |++++.+++ ..+.+++.-. +.+..
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G--a~~Vi~~~~~~~~~~~~~~~~~lGa------------~~v~~~ 229 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG--YENLYCLGRRDRPDPTIDIIEELDA------------TYVDSR 229 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC--CCEEEEEECCCSSCHHHHHHHHTTC------------EEEETT
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC--CcEEEEEeCCcccHHHHHHHHHcCC------------cccCCC
Confidence 5778 9999999864 7777 7777 6543 35 999999887 7787764211 11111
Q ss_pred --ccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 114 --FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 --d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+.+ .. .+ .+.+|+|+....-...++.+.+.|+++|+++....
T Consensus 230 ~~~~~~-i~-~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 230 QTPVED-VP-DV-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp TSCGGG-HH-HH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred ccCHHH-HH-Hh-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeC
Confidence 1111 10 01 23679999887776677888999999999887643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.024 Score=45.22 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.+++|+.||.|.++..+.... - ..++++|+++.+.+..+.++..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG-~-~~v~~~e~d~~a~~t~~~N~~~ 55 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG-A-ECVYSNEWDKYAQEVYEMNFGE 55 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-C-EEEEEECCCHHHHHHHHHHHSC
T ss_pred CCcEEEECCCcCHHHHHHHHCC-C-eEEEEEeCCHHHHHHHHHHcCC
Confidence 5789999999999999987643 2 2578899999999999988754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.017 Score=46.36 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=64.0
Q ss_pred CC-CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IK-PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~-~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
+. ++.+||-+|+|. |..+..+++..+ ++|++++.+++.++.+++.+.. .. ++..+-.+. ...
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~~lGa--------~~--vi~~~~~~~~~~~--- 241 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQDLGA--------DD--YVIGSDQAKMSEL--- 241 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHTTSCC--------SC--EEETTCHHHHHHS---
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHcCC--------ce--eeccccHHHHHHh---
Confidence 56 899999999874 777788887765 4899999998888777643321 11 111110010 111
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+.+|+|+....-...++...+.|+++|+++....
T Consensus 242 ~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 242 ADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp TTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSC
T ss_pred cCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCC
Confidence 13579999876654455677899999999987643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.013 Score=46.35 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--cccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~~-~~ 120 (206)
.+.++.+||-.|+ |.|..+..+++..+ .+|++++.+++.++.+++. .. . ..+.. + ..+. ..
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~-g~---------~-~~~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA-GA---------W-QVINYREEDLVERLKE 203 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH-TC---------S-EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC---------C-EEEECCCccHHHHHHH
Confidence 3678999999983 34777777776654 4899999999888877652 11 1 11111 1 1111 00
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+++.+.. ...++.+.+.|+++|+++....
T Consensus 204 ~-~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 I-TGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp H-TTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCC
T ss_pred H-hCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEec
Confidence 1 12335799999888 5667888999999999887643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.085 Score=41.53 Aligned_cols=92 Identities=12% Similarity=-0.048 Sum_probs=62.9
Q ss_pred eEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCCCee
Q psy10573 53 RILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHGSTR 129 (206)
Q Consensus 53 ~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~D 129 (206)
.||-.|+ | .|..+..+++..+ .+|++++.+++..+.+++.-.. .++.. +...... +..+.+|
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~--~~~~~~d 213 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKSLGAN-----------RILSRDEFAESRP--LEKQLWA 213 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTCS-----------EEEEGGGSSCCCS--SCCCCEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCC-----------EEEecCCHHHHHh--hcCCCcc
Confidence 4888887 4 4888888888764 4999999999998888763211 11211 1111111 2445789
Q ss_pred EEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 130 VIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++....-+ .++.+.+.|+++|+++.....
T Consensus 214 ~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~ 243 (324)
T 3nx4_A 214 GAIDTVGDK-VLAKVLAQMNYGGCVAACGLA 243 (324)
T ss_dssp EEEESSCHH-HHHHHHHTEEEEEEEEECCCT
T ss_pred EEEECCCcH-HHHHHHHHHhcCCEEEEEecC
Confidence 998877655 778889999999999876443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0099 Score=47.57 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=65.0
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-c---ccccc-c
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-Y---FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~---d~~~~-~ 119 (206)
.+.++.+||..|+ |.|..+..+++..+ .+|++++.+++..+.+++. .. . .++. . ++.+. .
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~~~-g~---------~-~~~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFRSI-GG---------E-VFIDFTKEKDIVGAVL 232 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHHHT-TC---------C-EEEETTTCSCHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHHHc-CC---------c-eEEecCccHhHHHHHH
Confidence 3678999999998 35777777776554 4899999988877777642 11 1 1111 1 11110 0
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. .++.+|+++.+......++.+.+.|+++|+++....
T Consensus 233 ~~--~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 233 KA--TDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HH--HTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCC
T ss_pred HH--hCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeC
Confidence 01 112579999988876778889999999999887643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.032 Score=45.00 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=63.1
Q ss_pred CC-CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IK-PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~-~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
+. ++.+||-+|+|. |..+..+++..+ .+|++++.+++.++.+++.+.. . .++...-.+. ...
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~lGa--------~--~v~~~~~~~~~~~~--- 248 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALKNFGA--------D--SFLVSRDQEQMQAA--- 248 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHHTSCC--------S--EEEETTCHHHHHHT---
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcCC--------c--eEEeccCHHHHHHh---
Confidence 56 889999999874 777777777654 4899999999888777643321 1 1221110111 111
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+.+|+|+........++...+.|+++|+++....
T Consensus 249 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 249 AGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp TTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCC
T ss_pred hCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEcc
Confidence 13579999876654445677889999999877643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.033 Score=44.47 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++.-.. .+.-...++.+. ... ..
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~ga~---------~v~~~~~~~~~~v~~~-~~ 224 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKSVGAD---------IVLPLEEGWAKAVREA-TG 224 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCS---------EEEESSTTHHHHHHHH-TT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCc---------EEecCchhHHHHHHHH-hC
Confidence 678999999997 3 4788888887654 4999999999888888763211 110001121111 111 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++.+..-. .++.+.+.|+++|+++....
T Consensus 225 ~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 225 GAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp TSCEEEEEESCC---CHHHHHHTEEEEEEEEEC--
T ss_pred CCCceEEEECCchh-HHHHHHHhhcCCCEEEEEEc
Confidence 33679999877654 45778899999999987643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.051 Score=43.03 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=62.6
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---cccccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFWLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~~~~-~~ 120 (206)
.+.++.+||..|+ |.|..+..+++..+ ++|++++.+++.++.+++ +.. ...+-. .++.+. ..
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~-~g~---------~~~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQ-IGF---------DAAFNYKTVNSLEEALKK 209 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-TTC---------SEEEETTSCSCHHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-cCC---------cEEEecCCHHHHHHHHHH
Confidence 3678999999997 34666666666543 589999999988877743 211 111110 111110 11
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
. ..+.+|+++.+..-. .++...+.|+++|++++..
T Consensus 210 ~--~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 210 A--SPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp H--CTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECC
T ss_pred H--hCCCCeEEEECCChH-HHHHHHHHHhcCCEEEEEe
Confidence 1 124689999988764 4677889999999998764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.12 Score=41.45 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=64.7
Q ss_pred CCCCCeEEEEc-cc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG-~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+||-.| +| .|..+..+++..+ .+|++++.+++.++.+++.-. . .++.. ++.+. ...
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~Ga---------~--~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLKSLGC---------D--RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCC---------c--EEEecCChhHHHHHHHh
Confidence 78899999999 34 5888888887654 489999999988888875211 1 11111 11111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+++.+..- ...+.+.+.|+++|+++....
T Consensus 228 --~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 228 --YPEGVDVVYESVGG-AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp --CTTCEEEEEECSCT-HHHHHHHHHEEEEEEEEECCC
T ss_pred --cCCCCCEEEECCCH-HHHHHHHHHHhcCCEEEEEeC
Confidence 12457999987775 466888899999999887643
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0053 Score=49.12 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+ ++.+||-+|+|. |..+..+++..+ . +|++++.+++.++.+++. .. .++.. ++.+. ...
T Consensus 163 ~-~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~l-a~-----------~v~~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 163 V-SGKSVLITGAGPIGLMAAMVVRASG--AGPILVSDPNPYRLAFARPY-AD-----------RLVNPLEEDLLEVVRRV 227 (343)
T ss_dssp C-TTSCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHGGGTTT-CS-----------EEECTTTSCHHHHHHHH
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-HH-----------hccCcCccCHHHHHHHh
Confidence 6 889999999864 777777777654 4 899999998877776553 21 11111 11110 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
....+|+|+....-...++...+.|+++|+++....
T Consensus 228 --~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 228 --TGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp --HSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred --cCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 123569999988776677888999999999877643
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.015 Score=46.47 Aligned_cols=76 Identities=12% Similarity=-0.047 Sum_probs=49.9
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
.+++|+.||.|.++..+....-....+.++|+++.+.+.-+.++.. ..++.+|..+...-.++...+|++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----------~~~~~~DI~~~~~~~~~~~~~D~l 73 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE----------TNLLNRNIQQLTPQVIKKWNVDTI 73 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECCCGGGCCHHHHHHTTCCEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC----------CceeccccccCCHHHhccCCCCEE
Confidence 4799999999999998876431112578999999999988887643 234555632211100123345999
Q ss_pred EecCCh
Q psy10573 132 QSCWTK 137 (206)
Q Consensus 132 ~~~~~~ 137 (206)
+..+++
T Consensus 74 ~ggpPC 79 (333)
T 4h0n_A 74 LMSPPC 79 (333)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 887775
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.035 Score=44.30 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+||-.|+ | .|..+..+++..+ ++|+++ .+++.++.+++.-.. .+. ...++.+...-....
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~~~lGa~---------~i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYVRDLGAT---------PID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHHHHHTSE---------EEE-TTSCHHHHHHHHHTT
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHHHHcCCC---------Eec-cCCCHHHHHHHHhcC
Confidence 678999999994 4 4788888887654 489999 888888877653211 121 011111110000123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....- ..++...+.|+++|+++....
T Consensus 215 ~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 215 QGFDLVYDTLGG-PVLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp SCEEEEEESSCT-HHHHHHHHHEEEEEEEEESCC
T ss_pred CCceEEEECCCc-HHHHHHHHHHhcCCeEEEEcc
Confidence 457999987774 466788899999999987643
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.11 Score=41.55 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CCCC--CeEEEEcc-c-CchHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-
Q psy10573 48 IKPG--ARILDIGS-G-SGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH- 118 (206)
Q Consensus 48 ~~~~--~~vLDlG~-G-~G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~- 118 (206)
+.++ .+||-.|+ | .|..+..+++..+ . +|++++.+++.++.+++.+.. . ..+.. +..+.
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~G--a~~Vi~~~~~~~~~~~~~~~~g~---------~-~~~d~~~~~~~~~~ 223 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLG--CSRVVGICGTHEKCILLTSELGF---------D-AAINYKKDNVAEQL 223 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSCC---------S-EEEETTTSCHHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHHHcCC---------c-eEEecCchHHHHHH
Confidence 7888 99999997 3 4666666666543 4 899999998887777653321 1 11111 11110
Q ss_pred cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
... ..+.+|+++.+..- ..++.+.+.|+++|+++...
T Consensus 224 ~~~--~~~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 224 RES--CPAGVDVYFDNVGG-NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHH--CTTCEEEEEESCCH-HHHHHHHHTEEEEEEEEECC
T ss_pred HHh--cCCCCCEEEECCCH-HHHHHHHHHhccCcEEEEEC
Confidence 111 12267999988875 56688889999999998653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.026 Score=45.24 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=63.1
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--cccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~~-~~ 120 (206)
.+.++.+||-.|+ |.|..+..+++..+ +++++++.+++.++.+++. .. . ..+.. + +.+. ..
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~-g~---------~-~~~~~~~~~~~~~~~~ 225 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLVTAGSQKKLQMAEKL-GA---------A-AGFNYKKEDFSEATLK 225 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH-TC---------S-EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC---------c-EEEecCChHHHHHHHH
Confidence 3678899999984 34677777766543 5899999999888887542 11 1 11111 1 1111 01
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+++.+..-. .++...+.|+++|+++....
T Consensus 226 ~-~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 226 F-TKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp H-TTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEECCC
T ss_pred H-hcCCCceEEEECCCch-HHHHHHHhccCCCEEEEEec
Confidence 1 1234679999887765 55777899999999987643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.027 Score=45.14 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=62.7
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~ 120 (206)
.+.++.+||-.|+ |.|..+..+++..+ ++|++++.+++.++.+++.-. . ..+.. ++.+. ..
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~ga---------~--~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGA---------H--EVFNHREVNYIDKIKK 233 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------S--EEEETTSTTHHHHHHH
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHHHHHHcCC---------C--EEEeCCCchHHHHHHH
Confidence 3678999999997 34677777776654 589999999988887654211 1 11111 11110 00
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
. .....+|+++.+..-. .+....+.|+++|+++...
T Consensus 234 ~-~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 Y-VGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp H-HCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECC
T ss_pred H-cCCCCcEEEEECCChH-HHHHHHHhccCCCEEEEEe
Confidence 0 1233679999887654 4577889999999998764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.031 Score=43.87 Aligned_cols=78 Identities=8% Similarity=-0.109 Sum_probs=51.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCC-CC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNP-HG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~ 126 (206)
....+++|+.||.|.++..+.... -... ++++|+++.+.+..+.+.. ...++.+|..+...-.++ .+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG-~~~~~v~a~E~d~~a~~ty~~N~~----------~~~~~~~DI~~i~~~~i~~~~ 82 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLG-IQVDRYIASEVCEDSITVGMVRHQ----------GKIMYVGDVRSVTQKHIQEWG 82 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTT-BCEEEEEEECCCHHHHHHHHHHTT----------TCEEEECCGGGCCHHHHHHTC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCC-CccceEEEEECCHHHHHHHHHhCC----------CCceeCCChHHccHHHhcccC
Confidence 456789999999999998887643 2223 6899999998888777653 234566673221110001 13
Q ss_pred CeeEEEecCCh
Q psy10573 127 STRVIQSCWTK 137 (206)
Q Consensus 127 ~~D~i~~~~~~ 137 (206)
.+|+++..+++
T Consensus 83 ~~Dll~ggpPC 93 (295)
T 2qrv_A 83 PFDLVIGGSPC 93 (295)
T ss_dssp CCSEEEECCCC
T ss_pred CcCEEEecCCC
Confidence 46999887665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.026 Score=44.82 Aligned_cols=98 Identities=23% Similarity=0.196 Sum_probs=63.8
Q ss_pred cCCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cc
Q psy10573 47 KIKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LL 120 (206)
Q Consensus 47 ~~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~ 120 (206)
.+.++.+||-.|+ |.|..+..+++..+ .++++++.+++.++.+++. .. . ..+.. +..+. ..
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~-g~---------~-~~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARKL-GC---------H-HTINYSTQDFAEVVRE 208 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH-TC---------S-EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc-CC---------C-EEEECCCHHHHHHHHH
Confidence 3678999999985 45777777776654 5899999999888877652 11 1 11111 11110 00
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .....+|+++.+..- ..++.+.+.|+++|+++....
T Consensus 209 ~-~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 I-TGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp H-HTTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEECCC
T ss_pred H-hCCCCCeEEEECCcH-HHHHHHHHhhccCCEEEEEec
Confidence 0 022357999988776 566788899999999877643
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.08 Score=41.88 Aligned_cols=71 Identities=11% Similarity=-0.045 Sum_probs=49.1
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
.+|||+-||.|.++.-+.+.. -. -+.++|+++.+.+.-+.++.. .++.+|..+...-.++ .+|++
T Consensus 1 mkvidLFsG~GG~~~G~~~aG-~~-~v~a~e~d~~a~~ty~~N~~~-----------~~~~~DI~~i~~~~~~--~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG-FR-IICANEYDKSIWKTYESNHSA-----------KLIKGDISKISSDEFP--KCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT-CE-EEEEEECCTTTHHHHHHHCCS-----------EEEESCGGGCCGGGSC--CCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCC-CE-EEEEEeCCHHHHHHHHHHCCC-----------CcccCChhhCCHhhCC--cccEE
Confidence 369999999999998886543 21 567999999999888877532 4566773322111112 46999
Q ss_pred EecCCh
Q psy10573 132 QSCWTK 137 (206)
Q Consensus 132 ~~~~~~ 137 (206)
+..+++
T Consensus 66 ~ggpPC 71 (331)
T 3ubt_Y 66 IGGPPS 71 (331)
T ss_dssp ECCCCG
T ss_pred EecCCC
Confidence 988886
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.03 Score=44.94 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCCCeEEEEc-cc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG-~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+||-.| +| .|..+..+++..+ .+|++++.+++.++.+++.-.. .++.. ++.+. ...
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACERLGAK-----------RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCC-----------EEEeCCchHHHHHHHHH
Confidence 67899999884 34 4777777777654 5899999999988888763211 11211 11111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+.+|+++.+..-. .++...+.|+++|+++.....
T Consensus 232 --~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~ 267 (353)
T 4dup_A 232 --TGQGVDIILDMIGAA-YFERNIASLAKDGCLSIIAFL 267 (353)
T ss_dssp --HSSCEEEEEESCCGG-GHHHHHHTEEEEEEEEECCCT
T ss_pred --hCCCceEEEECCCHH-HHHHHHHHhccCCEEEEEEec
Confidence 134579999877754 557788999999998876543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.023 Score=45.27 Aligned_cols=78 Identities=8% Similarity=-0.134 Sum_probs=49.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceE-EEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRV-YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v-~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
...+++|+.||.|.++..+....-+...+ .++|+++.+.+..+.++... ++.+|..+...-.++...+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-----------~~~~DI~~~~~~~i~~~~~ 77 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-----------VQVKNLDSISIKQIESLNC 77 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-----------CBCCCTTTCCHHHHHHTCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-----------cccCChhhcCHHHhccCCC
Confidence 34689999999999999887542111256 79999999999998887541 3344521111000122245
Q ss_pred eEEEecCChH
Q psy10573 129 RVIQSCWTKE 138 (206)
Q Consensus 129 D~i~~~~~~~ 138 (206)
|+++..+++.
T Consensus 78 Dil~ggpPCQ 87 (327)
T 3qv2_A 78 NTWFMSPPCQ 87 (327)
T ss_dssp CEEEECCCCT
T ss_pred CEEEecCCcc
Confidence 9998876643
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.35 Score=37.97 Aligned_cols=94 Identities=18% Similarity=0.052 Sum_probs=61.1
Q ss_pred cCCCCCeEEEEc-ccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCC
Q psy10573 47 KIKPGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTN 123 (206)
Q Consensus 47 ~~~~~~~vLDlG-~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 123 (206)
.+.++.+||-.| +|. |..+..+++..+ .++++++ ++...+.+++.-. . .++..+-.+ ...
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~~lGa---------~--~~i~~~~~~~~~~--- 211 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLKALGA---------E--QCINYHEEDFLLA--- 211 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHHHHTC---------S--EEEETTTSCHHHH---
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHHHcCC---------C--EEEeCCCcchhhh---
Confidence 378999999986 664 888888888764 4888887 4444666654211 1 122211011 000
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.-..+|+++....-... +...+.|+++|+++...
T Consensus 212 ~~~g~D~v~d~~g~~~~-~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 212 ISTPVDAVIDLVGGDVG-IQSIDCLKETGCIVSVP 245 (321)
T ss_dssp CCSCEEEEEESSCHHHH-HHHGGGEEEEEEEEECC
T ss_pred hccCCCEEEECCCcHHH-HHHHHhccCCCEEEEeC
Confidence 01356999988877666 88899999999998763
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.13 Score=40.56 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=64.0
Q ss_pred CCCCC-eEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CC
Q psy10573 48 IKPGA-RILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TN 123 (206)
Q Consensus 48 ~~~~~-~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 123 (206)
+.++. +||-.|+ | .|..+..+++..+ .++++++.+++.++.+++.-. . .++..+-...... .+
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~lGa---------~--~v~~~~~~~~~~~~~~ 213 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQLGA---------S--EVISREDVYDGTLKAL 213 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHHTC---------S--EEEEHHHHCSSCCCSS
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC---------c--EEEECCCchHHHHHHh
Confidence 56775 8999997 4 4788888887765 489999998888888765311 1 1121110100000 11
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+++....- ..++...+.++++|+++....
T Consensus 214 ~~~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 214 SKQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp CCCCEEEEEESCCT-HHHHHHHTTEEEEEEEEECCC
T ss_pred hcCCccEEEECCcH-HHHHHHHHhhcCCCEEEEEec
Confidence 33468999987776 466888899999999987643
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.67 E-value=0.03 Score=43.82 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc-ccccccCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW-LRHLLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~ 124 (206)
+.++.+||-.|+ | .|..+..+++..+ .+|++++.+++.++.+++. .. . .++..+- .+... .+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~-ga--------~--~~~~~~~~~~~~~-~~- 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLAL-GA--------E--EAATYAEVPERAK-AW- 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHT-TC--------S--EEEEGGGHHHHHH-HT-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhc-CC--------C--EEEECCcchhHHH-Hh-
Confidence 678999999997 3 4777777777654 4899999999888877642 11 1 1121110 00000 01
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++. ..- ...+...+.|+++|+++...
T Consensus 188 -~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 188 -GGLDLVLE-VRG-KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp -TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEEC-
T ss_pred -cCceEEEE-CCH-HHHHHHHHhhccCCEEEEEe
Confidence 35699998 655 46678889999999987653
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.034 Score=45.95 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCeEEEEcccCchHHHHHHHHhC---C-CceEEEEeCCHHHHHHHHHhhh
Q psy10573 51 GARILDIGSGSGYLTACLAYMAG---P-EGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~---~-~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
...|+|+|+|+|.++..+++.+. + ..+++.||+|+...+.=++++.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 47999999999999988876541 1 2379999999988777666665
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.05 Score=42.57 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=39.3
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCChH--------------------------HHHHHHHhcccCCcEEEEEec
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------------------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------------------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.++.++++|..+... .+++++||+|+++++.. .++.++.++|+|||.+++.+.
T Consensus 20 ~~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 357899999554332 13788999999988751 134678899999999988876
Q ss_pred C
Q psy10573 160 E 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 99 d 99 (297)
T 2zig_A 99 D 99 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.28 Score=40.63 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=65.7
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc----c---c--
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY----F---W-- 115 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~----d---~-- 115 (206)
.+.++.+||-+|+ | .|..+..+++..+ +++++++.+++.++.+++.-.....+ ....++.+... + +
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~~~lGa~~vi~-~~~~d~~~~~~~~~~~~~~~~~ 301 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEICRAMGAEAIID-RNAEGYRFWKDENTQDPKEWKR 301 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHTCCEEEE-TTTTTCCSEEETTEECHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCcEEEe-cCcCcccccccccccchHHHHH
Confidence 3688999999997 5 4788888887654 58899999998888886532210000 00000000000 0 0
Q ss_pred -ccc-cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 116 -LRH-LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 116 -~~~-~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+. ... .....+|+|+....- ..++...+.|+++|+++....
T Consensus 302 ~~~~i~~~-t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 302 FGKRIREL-TGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHH-HTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHH-hCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEec
Confidence 000 000 123467999988776 567888899999999987643
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.059 Score=42.58 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=61.8
Q ss_pred CCCCC-eEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCC
Q psy10573 48 IKPGA-RILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~-~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~ 123 (206)
+.++. +||-.|+ | .|..+..+++..+ +++++++.+++.++.+++.-.. .++.. +......-.+
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~lGa~-----------~~i~~~~~~~~~~~~~ 212 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVLGAK-----------EVLAREDVMAERIRPL 212 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHTTCS-----------EEEECC---------C
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc-----------EEEecCCcHHHHHHHh
Confidence 66775 8999997 4 4788888887764 5899999998888888652111 11111 1000000011
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....-. .++...+.++++|+++...
T Consensus 213 ~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 213 DKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp CSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECS
T ss_pred cCCcccEEEECCcHH-HHHHHHHhhccCCEEEEEe
Confidence 334679999876653 5677889999999998764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.12 Score=41.52 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=61.7
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCH---HHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCC
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVM---ELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPH 125 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~ 125 (206)
+.+||-.|+|. |..+..+++..+ .+|++++.++ +..+.+++.-.. .+. ..++.+.. .. .
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~~ga~---------~v~--~~~~~~~~~~~--~- 244 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEETKTN---------YYN--SSNGYDKLKDS--V- 244 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHHHTCE---------EEE--CTTCSHHHHHH--H-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHHhCCc---------eec--hHHHHHHHHHh--C-
Confidence 99999999864 667777776654 4899999987 777777642111 111 00211100 01 1
Q ss_pred CCeeEEEecCChHHHH-HHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYN-SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~-~~~~~~L~~gG~l~~~~~~ 160 (206)
+.+|+++......... +.+.+.|+++|+++.....
T Consensus 245 ~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 245 GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp CCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCC
T ss_pred CCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecC
Confidence 4569999988776666 8889999999998876443
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.1 Score=42.44 Aligned_cols=46 Identities=22% Similarity=0.152 Sum_probs=35.6
Q ss_pred CeEEEEcccCchHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 52 ARILDIGSGSGYLTACLAYMAG------PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~------~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..|+|+|+|+|.++..+++.+. ...+++.||+|+...+.=++++..
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence 4799999999999988876542 234889999999888766666543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.15 Score=41.02 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=62.7
Q ss_pred CCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 49 KPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 49 ~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
.++.+||-.|+ | .|..+..+++..+ .+++++. +++.++.+++.-. . .++.. |+.+. ...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~v~~~- 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKSRGA---------E--EVFDYRAPNLAQTIRTY- 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHHTTC---------S--EEEETTSTTHHHHHHHH-
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHHcCC---------c--EEEECCCchHHHHHHHH-
Confidence 78899999998 3 5888888888764 4788774 7877777765321 1 12221 11111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcc-cCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQL-VPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~l~~~~ 158 (206)
-++.+|+++....-...++.+.+.| +++|+++...
T Consensus 228 -t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 228 -TKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp -TTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESS
T ss_pred -ccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEe
Confidence 2334799998888777778888888 6999987664
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.12 Score=43.43 Aligned_cols=89 Identities=13% Similarity=-0.047 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~ 125 (206)
..++.+|+-+|+|. |......++..+ .+|+++|.++.....+++. .+++. +..+ ....
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~~------------Ga~~~--~l~e~l~~a---- 330 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMME------------GFDVV--TVEEAIGDA---- 330 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT------------TCEEC--CHHHHGGGC----
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc------------CCEEe--cHHHHHhCC----
Confidence 56789999999985 766666666654 4899999999877666532 12221 2111 1123
Q ss_pred CCeeEEEecCChHHHHH-HHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNS-WLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~-~~~~~L~~gG~l~~~~~ 159 (206)
|+|+.......++. ...+.+++||+++....
T Consensus 331 ---DvVi~atgt~~~i~~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 331 ---DIVVTATGNKDIIMLEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp ---SEEEECSSSSCSBCHHHHHHSCTTCEEEECSS
T ss_pred ---CEEEECCCCHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99988766555443 67788999998876544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.11 Score=41.13 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.7
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCCh--------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
....++.+|..+... .++++++|+|+++++. ...+..+.++|+|||.+++.+...
T Consensus 13 ~~~~ii~gD~~~~l~-~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 13 SNGSMYIGDSLELLE-SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SSEEEEESCHHHHGG-GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCceEEeCcHHHHHh-hCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 457888999444333 1378899999999874 235578899999999999986653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.11 Score=45.45 Aligned_cols=107 Identities=13% Similarity=-0.078 Sum_probs=64.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHh------CC-----CceEEEEeCCH---HHHHHHHHh-----------hhccCcc---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEHVM---ELAESSIKN-----------IDKGNSE--- 101 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~------~~-----~~~v~~iD~s~---~~~~~a~~~-----------~~~~~~~--- 101 (206)
+.-+|+|+|.|+|.....+.+.. .| ..+++++|..| +.+..+... +..+...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44689999999998877665432 11 13678999844 444332221 1111100
Q ss_pred ----c--cCCCceEEEEcccccccccCCC---CCCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEE
Q psy10573 102 ----L--LDQGRVQFVAYFWLRHLLLTNP---HGSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 102 ----~--~~~~~i~~~~~d~~~~~~~~~~---~~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~ 157 (206)
. .+.-.++++.+|..+..+ .+. .+.+|.++.++.. ..++..+.+++++||.+...
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~-~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLP-TLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGG-GCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEEccCHHHHHh-hcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 0 011256788888433322 122 5678999997653 45778899999999987543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.46 Score=38.00 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=62.7
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--cccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~~-~~~ 121 (206)
.+.++.+||-.|+|. |..+..+++.. + .+|+++|.+++.++.+++.-.. .++... +.+. ...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~v~~~ 249 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLGAD-----------HVVDARRDPVKQVMEL 249 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTTCS-----------EEEETTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCC-----------EEEeccchHHHHHHHH
Confidence 378899999999874 77777777766 4 4899999999988888753111 112111 0010 111
Q ss_pred CCCCCCeeEEEecCChHH--HHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEE--YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~--~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+|+....-.. .++...+. ++|+++....
T Consensus 250 -~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~ 286 (359)
T 1h2b_A 250 -TRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGY 286 (359)
T ss_dssp -TTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCC
T ss_pred -hCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeC
Confidence 01226799998877664 56666666 8998877643
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.4 Score=38.56 Aligned_cols=94 Identities=19% Similarity=0.064 Sum_probs=59.7
Q ss_pred CCCCCeEEEEc-cc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccC
Q psy10573 48 IKPGARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG-~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~ 122 (206)
+.++.+||-.| +| .|..+..+++..+ ++|++++ +++..+.+++.-. . .++.. ++.+.. .
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~~lGa---------~--~v~~~~~~~~~~~~-~- 244 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVRKLGA---------D--DVIDYKSGSVEEQL-K- 244 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHHTTC---------S--EEEETTSSCHHHHH-H-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHHHcCC---------C--EEEECCchHHHHHH-h-
Confidence 56889999998 45 4788888887654 5888888 6666666643211 1 11111 111110 0
Q ss_pred CCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~ 158 (206)
....+|+++....-. ..++...+.++++|+++...
T Consensus 245 -~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 245 -SLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp -TSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESC
T ss_pred -hcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeC
Confidence 113569999877655 44567788899999998754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.63 Score=38.36 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=63.8
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--c-------
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--W------- 115 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~------- 115 (206)
.+.++.+||-.|+ | .|..+..+++..+ .++++++.+++.++.+++.-. ..+ +...+ +
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~~~~~~lGa---------~~~-i~~~~~~~~~~~~~~ 284 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKEAAVRALGC---------DLV-INRAELGITDDIADD 284 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------CCE-EEHHHHTCCTTGGGC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCC---------CEE-Eeccccccccccccc
Confidence 3688999999997 4 4777777777654 588999999988888865311 111 11111 0
Q ss_pred -----------ccc-cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 116 -----------LRH-LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 116 -----------~~~-~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+. ... -...+|+++....-. .++...+.++++|+++....
T Consensus 285 ~~~~~~~~~~~~~~v~~~--~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 285 PRRVVETGRKLAKLVVEK--AGREPDIVFEHTGRV-TFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHHHHHHHHHHH--HSSCCSEEEECSCHH-HHHHHHHHSCTTCEEEESCC
T ss_pred ccccchhhhHHHHHHHHH--hCCCceEEEECCCch-HHHHHHHHHhcCCEEEEEec
Confidence 000 001 123569999887764 56778889999999987643
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.094 Score=41.86 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=55.0
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--ccccc-ccc
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~~-~~~ 121 (206)
.+.++.+||-.|+ | .|..+..+++..+ ..+|++++ ++...+.++ +.. . .++.. |+.+. ...
T Consensus 139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~--~ga--------~--~~~~~~~~~~~~~~~~ 204 (349)
T 4a27_A 139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK--DSV--------T--HLFDRNADYVQEVKRI 204 (349)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG--GGS--------S--EEEETTSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH--cCC--------c--EEEcCCccHHHHHHHh
Confidence 3688999999998 3 3677777776542 34888887 555555554 211 1 12221 11111 112
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+|+....-..+ +.+.+.|+++|+++..-.
T Consensus 205 --~~~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 205 --SAEGVDIVLDCLCGDNT-GKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp --CTTCEEEEEEECC--------CTTEEEEEEEEEEC-
T ss_pred --cCCCceEEEECCCchhH-HHHHHHhhcCCEEEEECC
Confidence 34567999987665544 778899999999987643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.09 E-value=1.1 Score=30.42 Aligned_cols=96 Identities=9% Similarity=-0.069 Sum_probs=55.4
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCee
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTR 129 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D 129 (206)
.+|+-+|+|. |......+.. .+..++++|.+++.++.+++ ..+.++.+|..+...+ ...-..+|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~~~~l~~a~i~~ad 73 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE------------RGVRAVLGNAANEEIMQLAHLECAK 73 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH------------TTCEEEESCTTSHHHHHHTTGGGCS
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH------------cCCCEEECCCCCHHHHHhcCcccCC
Confidence 5788889864 4444333333 23489999999998887764 1456777773221111 00123458
Q ss_pred EEEecCChHH---HHHHHHhcccCCcEEEEEecCC
Q psy10573 130 VIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++++..+-.. ..-...+.+.|+..++....+.
T Consensus 74 ~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~ 108 (140)
T 3fwz_A 74 WLILTIPNGYEAGEIVASARAKNPDIEIIARAHYD 108 (140)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 8876544332 1233455567888777666544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.62 Score=40.62 Aligned_cols=108 Identities=10% Similarity=-0.071 Sum_probs=63.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHh------CC-----CceEEEEeC---CHHHHHHHHHh-----------hhccCccc--
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEH---VMELAESSIKN-----------IDKGNSEL-- 102 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~------~~-----~~~v~~iD~---s~~~~~~a~~~-----------~~~~~~~~-- 102 (206)
+.-+|+|+|-|+|.......+.. .| .-+++++|. +.+.+..+... +..+....
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34589999999998776664432 11 135789998 66666543332 11111000
Q ss_pred -------cCCCceEEEEcccccccccCCC---CCCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEe
Q psy10573 103 -------LDQGRVQFVAYFWLRHLLLTNP---HGSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 103 -------~~~~~i~~~~~d~~~~~~~~~~---~~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...++++.+|..+..+ .+. .+.+|+++.+.-. ..++..+.++++|||.+...+
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~-~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTS-QLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGG-GBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEecCCHHHHHH-hcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 011235666677332222 011 4678999997542 347789999999999876443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.4 Score=38.79 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=56.9
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLTNPH 125 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~ 125 (206)
++.+|+-+|+|. |..+...++..+ .+|+++|.++..++.+++.+.. .+..... +..+..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~---------~~~~~~~~~~~l~~~l------ 229 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCG---------RIHTRYSSAYELEGAV------ 229 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTT---------SSEEEECCHHHHHHHH------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCC---------eeEeccCCHHHHHHHH------
Confidence 468899999975 666666665554 4899999999888777654422 1111111 111110
Q ss_pred CCeeEEEecCChHH------HHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~ 158 (206)
...|+|+.....+. +.+...+.+++||+++...
T Consensus 230 ~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 230 KRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred cCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 12399987543322 2466778899999887665
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.53 Score=37.80 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccCCCCC
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLTNPHG 126 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~~ 126 (206)
+.+|+-+|+|. |..+..+++..+ ++|+++|.+++.++.+++.... .+..+..+ ..+. . .
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~--~----~ 229 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETA--V----A 229 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHH--H----H
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc---------eeEeeeCCHHHHHHH--H----c
Confidence 47899999974 666666666554 4899999999888887765432 22222211 1111 1 1
Q ss_pred CeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|+|+....... +.+...+.+++||+++.....
T Consensus 230 ~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 230 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp TCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecC
Confidence 2399987654432 245667889999988876554
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.29 E-value=3.5 Score=32.70 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc----------------ccCCCceEEEE
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----------------LLDQGRVQFVA 112 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----------------~~~~~~i~~~~ 112 (206)
.+...|+.+|||.......+.... +...++-+|. |++++.-++.+...... .....+.+++.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 456789999999998888877543 4457777776 77877777776552100 00125688888
Q ss_pred cccccc-------cccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEE
Q psy10573 113 YFWLRH-------LLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 113 ~d~~~~-------~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~ 157 (206)
.|+.+. .... ..+...++++-..+. .+++.+.+.+ |+|.+++.
T Consensus 174 ~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp CCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred cCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 883321 1111 223456777766553 2455555555 67776543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.09 E-value=1 Score=36.23 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=55.1
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
++.+|+-+|+|. |..+...+...+ .+|+++|.++..++.+++.+.. .+.....+....... + ..+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g~---------~~~~~~~~~~~l~~~-~--~~~ 230 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFGG---------RVITLTATEANIKKS-V--QHA 230 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTT---------SEEEEECCHHHHHHH-H--HHC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcCc---------eEEEecCCHHHHHHH-H--hCC
Confidence 357899999864 555555555443 4899999999887776653321 122221110000000 0 123
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|+....... +.+...+.+++||.++....
T Consensus 231 DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 231 DLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp SEEEECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence 99988776543 24677888899998876543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.80 E-value=1.4 Score=34.92 Aligned_cols=92 Identities=13% Similarity=-0.039 Sum_probs=57.0
Q ss_pred CeEEEE-ccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---cccccc-ccCCCC
Q psy10573 52 ARILDI-GSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHL-LLTNPH 125 (206)
Q Consensus 52 ~~vLDl-G~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~-~~~~~~ 125 (206)
..||-. |+| .|..+..+++..+ .+|++++.+++.++.+++.-.. .++.. ++.+.. .. ...
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~~Ga~-----------~~~~~~~~~~~~~v~~~-~~~ 231 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKDIGAA-----------HVLNEKAPDFEATLREV-MKA 231 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHHHTCS-----------EEEETTSTTHHHHHHHH-HHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCC-----------EEEECCcHHHHHHHHHH-hcC
Confidence 566643 444 3677777777664 4999999999888888753211 11211 111100 00 011
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-... +.+.+.|+++|+++...
T Consensus 232 ~g~D~vid~~g~~~~-~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 232 EQPRIFLDAVTGPLA-SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HCCCEEEESSCHHHH-HHHHHHSCTTCEEEECC
T ss_pred CCCcEEEECCCChhH-HHHHhhhcCCCEEEEEe
Confidence 245999988776654 77889999999998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=91.53 E-value=2.7 Score=31.63 Aligned_cols=99 Identities=11% Similarity=0.006 Sum_probs=58.2
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.+|--|++. ..+..+++.+ ..+.+|+.++.+++.++...+.+. .++.++..|..+.....
T Consensus 7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHHH
Confidence 467788777654 4444444433 245699999999887776665542 36788888833221100
Q ss_pred -CCCCCeeEEEecCCh-----------H--------------HHHHHHHhcccCCcEEEEEe
Q psy10573 123 -NPHGSTRVIQSCWTK-----------E--------------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 -~~~~~~D~i~~~~~~-----------~--------------~~~~~~~~~L~~gG~l~~~~ 158 (206)
-.-+..|+++.+... + .+.+.+...++.+|.|+...
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 011356999887542 0 12355666666778777654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=3.3 Score=31.14 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=57.9
Q ss_pred CCCeEEEEccc--CchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC----
Q psy10573 50 PGARILDIGSG--SGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT---- 122 (206)
Q Consensus 50 ~~~~vLDlG~G--~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---- 122 (206)
.++.+|-.|++ .| .+..+++.+ ..+.+|+.++.++...+.+.+.... ....++.++..|..+.....
T Consensus 6 ~~k~vlVTGasg~~G-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 6 EGRNIVVMGVANKRS-IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGT-----LDRNDSIILPCDVTNDAEIETCFA 79 (266)
T ss_dssp TTCEEEEECCCSTTS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHT-----SSSCCCEEEECCCSSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCc-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHh-----cCCCCceEEeCCCCCHHHHHHHHH
Confidence 46778877765 33 333333322 2345899999887666666555443 12236888888833221100
Q ss_pred ---CCCCCeeEEEecCCh---------------H--------------HHHHHHHhcccCCcEEEEEec
Q psy10573 123 ---NPHGSTRVIQSCWTK---------------E--------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ---~~~~~~D~i~~~~~~---------------~--------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
-..+..|+++.+... + .+.+.+...++++|.|+....
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 001345888876531 0 133566677777888776653
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=91.07 E-value=0.32 Score=40.82 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=34.4
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
..+++|+.||.|.++.-+.... - -.++++|+++.+.+.-+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG-~-~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG-G-QCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT-E-EEEEEECCCHHHHHHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCC-C-EEEEEEeCCHHHHHHHHHhc
Confidence 3579999999999999886532 1 14789999999988888776
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.43 Score=39.35 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.-.+++|+-+|+|. |......++.++ .+|+++|+++.....+... .+.+...+ +. + .
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~~------------G~~v~~Le--ea--l--~-- 274 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACMD------------GFRLVKLN--EV--I--R-- 274 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT------------TCEECCHH--HH--T--T--
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHHc------------CCEeccHH--HH--H--h--
Confidence 45789999999996 666666666554 4899999998655444321 12222111 11 1 1
Q ss_pred CeeEEEecCChHHHH-HHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYN-SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~-~~~~~~L~~gG~l~~~~~~ 160 (206)
..|+|+......+++ .+....+|+|++++-..-.
T Consensus 275 ~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 275 QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSST
T ss_pred cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCC
Confidence 128888865444444 4677888999877665433
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.78 E-value=1.4 Score=31.30 Aligned_cols=97 Identities=13% Similarity=-0.000 Sum_probs=51.5
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CC-CCCC
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TN-PHGS 127 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~-~~~~ 127 (206)
+.+|+-+|+|. |......+... .+..|+++|.+++.++.+++. .+.++.+|..+...+ .. .-..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~-~g~~V~vid~~~~~~~~~~~~------------g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRAR-YGKISLGIEIREEAAQQHRSE------------GRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHHHT------------TCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-cCCeEEEEECCHHHHHHHHHC------------CCCEEEcCCCCHHHHHhccCCCC
Confidence 45788888864 44443333332 024899999999887766531 234555552211100 00 1234
Q ss_pred eeEEEecCChHHHH---HHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEEYN---SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~~~---~~~~~~L~~gG~l~~~~~~ 160 (206)
+|+|+...+-.... -...+.+.|++.++..+..
T Consensus 106 ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 106 VKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred CCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 69888755433222 2234455667777766544
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.68 E-value=1.9 Score=34.27 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=58.9
Q ss_pred cCCCC-CeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHhhhccCccccCCCceEEEEc------
Q psy10573 47 KIKPG-ARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMEL----AESSIKNIDKGNSELLDQGRVQFVAY------ 113 (206)
Q Consensus 47 ~~~~~-~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~----~~~a~~~~~~~~~~~~~~~~i~~~~~------ 113 (206)
.+.++ .+||-.|+ | .|..+..+++..+ ++++++..++.. .+.+++ +.. . .++..
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~-lGa--------~--~vi~~~~~~~~ 229 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKE-LGA--------T--QVITEDQNNSR 229 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHH-HTC--------S--EEEEHHHHHCG
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHHh-cCC--------e--EEEecCccchH
Confidence 36788 99999987 4 4888888888765 477777544432 344432 211 1 12211
Q ss_pred cccccc-ccCC--CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHL-LLTN--PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~-~~~~--~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+.+.. .. . ..+.+|+|+....-.... ...+.|+++|+++....
T Consensus 230 ~~~~~i~~~-t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 230 EFGPTIKEW-IKQSGGEAKLALNCVGGKSST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp GGHHHHHHH-HHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEECCC
T ss_pred HHHHHHHHH-hhccCCCceEEEECCCchhHH-HHHHHhccCCEEEEecC
Confidence 111100 00 0 123579999988776665 67899999999987643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.54 E-value=3.1 Score=33.48 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=63.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.+.+||.++.+.|.+++.++.. .++.+.-|-.....++.+++.++++ ...+++...- . - ..+.+|
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~---~~~~~~~~~~-~----~--~~~~~~ 102 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGID---ESSVKFLDST-A----D--YPQQPG 102 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCC---GGGSEEEETT-S----C--CCSSCS
T ss_pred CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCC---ccceEecccc-c----c--cccCCC
Confidence 4578999999999999888642 3455554666666777788775432 2235554332 1 1 234569
Q ss_pred EEEecCCh-----HHHHHHHHhcccCCcEEEEEecC
Q psy10573 130 VIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 130 ~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+|+...+- ...+..+...|++|+.+++....
T Consensus 103 ~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 103 VVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred EEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 98886653 34667888889999999766553
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.23 E-value=3.7 Score=31.60 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+. .+...+..|..+....
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---------~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---------GGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeEEEEecCCCHHHHHHHHHHH
Confidence 4677776676665 444443332 245699999999988877665543 2566777773221110
Q ss_pred CCCCCCeeEEEecCCh--------------HH-----------HHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTK--------------EE-----------YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~--------------~~-----------~~~~~~~~L~~gG~l~~~~ 158 (206)
.-.-+..|+++.+... .. +.+.+...++.+|.++...
T Consensus 98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 0012567999887652 11 2256677777777776653
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.86 E-value=1.5 Score=30.83 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s 84 (206)
.....|||+|-|+|..--.+...+ |...|+++|..
T Consensus 39 ~~~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR~ 73 (174)
T 3iht_A 39 GLSGPVYELGLGNGRTYHHLRQHV-QGREIYVFERA 73 (174)
T ss_dssp TCCSCEEEECCTTCHHHHHHHHHC-CSSCEEEEESS
T ss_pred CCCCceEEecCCCChhHHHHHHhC-CCCcEEEEEee
Confidence 445789999999999999999888 78899999853
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=88.79 E-value=1.5 Score=36.40 Aligned_cols=90 Identities=13% Similarity=-0.075 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.-.|++|+-+|+|. |......++.++ .+|+++|+++.....+.. . .+++...+ ......
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~~---~---------G~~vv~Le-ElL~~A----- 303 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAAM---D---------GFEVVTLD-DAASTA----- 303 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHH---T---------TCEECCHH-HHGGGC-----
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHHh---c---------CceeccHH-HHHhhC-----
Confidence 45789999999996 666666666554 599999998865443321 1 22232222 111123
Q ss_pred CeeEEEecCChHHHH-HHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYN-SWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~-~~~~~~L~~gG~l~~~~~ 159 (206)
|+|+......+++ .+....+|+|++++-+.-
T Consensus 304 --DIVv~atgt~~lI~~e~l~~MK~GAILINvGR 335 (464)
T 3n58_A 304 --DIVVTTTGNKDVITIDHMRKMKDMCIVGNIGH 335 (464)
T ss_dssp --SEEEECCSSSSSBCHHHHHHSCTTEEEEECSS
T ss_pred --CEEEECCCCccccCHHHHhcCCCCeEEEEcCC
Confidence 8888765544443 567788899998775543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.73 E-value=0.54 Score=37.19 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=38.2
Q ss_pred ceEEE-EcccccccccCCCCCCeeEEEecCChH-----------------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 107 RVQFV-AYFWLRHLLLTNPHGSTRVIQSCWTKE-----------------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 107 ~i~~~-~~d~~~~~~~~~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++|..+... .++++++|+|+.+++.. ..+..+.++|+|+|.+++.+...
T Consensus 38 ~~~l~i~gD~l~~L~-~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLA-KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEEEECCHHHHHH-TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEECCcHHHHHH-hCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 35667 888443332 24778899999988741 24467789999999999886643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=88.69 E-value=2.9 Score=33.16 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=56.5
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEE-EeCCHH---HHHHHHHhhhccCccccCCCceEEEEcc---ccc
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYG-VEHVME---LAESSIKNIDKGNSELLDQGRVQFVAYF---WLR 117 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~-iD~s~~---~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~ 117 (206)
.+.++.+||-.|+ | .|..+..+++..+ +++++ ++.++. ..+.+++. . .. .++..+ ...
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~l-G--------a~--~vi~~~~~~~~~ 230 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDIQKLSDRLKSL-G--------AE--HVITEEELRRPE 230 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCHHHHHHHHHHT-T--------CS--EEEEHHHHHSGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccchHHHHHHHHhc-C--------Cc--EEEecCcchHHH
Confidence 3788999999997 4 5888888888765 35554 444332 34445432 1 11 122211 001
Q ss_pred ccccCCCC-CCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 118 HLLLTNPH-GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 118 ~~~~~~~~-~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.... ... +.+|+|+....-... ....+.|+++|+++..
T Consensus 231 ~~~~-~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 231 MKNF-FKDMPQPRLALNCVGGKSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp GGGT-TSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred HHHH-HhCCCCceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence 1111 011 147999988776555 4578999999999876
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.66 E-value=6.2 Score=29.57 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=47.5
Q ss_pred CCCeEEEEcc-cCchHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-----
Q psy10573 50 PGARILDIGS-GSGYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT----- 122 (206)
Q Consensus 50 ~~~~vLDlG~-G~G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----- 122 (206)
.++.+|-.|+ |+|. +..+++. ...+.+|+.++.++...+...+.+.. ....++.++..|..+.....
T Consensus 21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLAD-----LGLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----TCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-----cCCCceEEEEeCCCCHHHHHHHHHH
Confidence 4677887776 4443 2223222 22445899999999887777766644 22357889998833221100
Q ss_pred --CCCCCeeEEEecCC
Q psy10573 123 --NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 --~~~~~~D~i~~~~~ 136 (206)
-..+..|+++.+..
T Consensus 95 ~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHhCCCcEEEECCC
Confidence 00134699988765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.17 E-value=4.3 Score=27.18 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=52.1
Q ss_pred CCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCe
Q psy10573 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~ 128 (206)
..+|+-+|+|. .+..+++.+. .+.+++++|.+++.++.+++. .+.++.+|..+...+ ...-..+
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------------GFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------------TCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------------CCcEEECCCCCHHHHHhCCcccC
Confidence 35788899864 4444443321 234899999999887776542 356777773222111 0122356
Q ss_pred eEEEecCChHH---HHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+...+-.. ......+.+. ...++......
T Consensus 72 d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~ 106 (141)
T 3llv_A 72 SAVLITGSDDEFNLKILKALRSVS-DVYAIVRVSSP 106 (141)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHC-CCCEEEEESCG
T ss_pred CEEEEecCCHHHHHHHHHHHHHhC-CceEEEEEcCh
Confidence 88877655332 1222333344 55555555444
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=0.7 Score=32.01 Aligned_cols=100 Identities=15% Similarity=0.020 Sum_probs=51.4
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 126 (206)
.++.+|+-+|+|. |......+... +..|+++|.+++.++.+++ . ....++.+|..+...+ ...-.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~--------~g~~~~~~d~~~~~~l~~~~~~ 83 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---E--------FSGFTVVGDAAEFETLKECGME 83 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---T--------CCSEEEESCTTSHHHHHTTTGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---c--------CCCcEEEecCCCHHHHHHcCcc
Confidence 4567899999864 44444333333 3489999998865543321 1 1234555552111000 00112
Q ss_pred CeeEEEecCChHHHHHHH---HhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKEEYNSWL---LDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~---~~~L~~gG~l~~~~~~~ 161 (206)
.+|+|+...........+ .+.+.+...++....+.
T Consensus 84 ~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 84 KADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp GCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 459888876655443333 33334455665555443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.04 E-value=2.4 Score=32.79 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~ 126 (206)
-.+.+|+-+|+|. |......+...+ .+|+++|.++...+.+.+ + ...+... +..+. + .
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~-~-----------g~~~~~~~~l~~~--l----~ 212 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIAE-M-----------GMEPFHISKAAQE--L----R 212 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-T-----------TSEEEEGGGHHHH--T----T
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH-C-----------CCeecChhhHHHH--h----c
Confidence 3578999999885 555555555444 489999999876544432 1 1222221 21111 1 1
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..|+|+...+.+.+.+.....+++|++++-...++
T Consensus 213 ~aDvVi~~~p~~~i~~~~l~~mk~~~~lin~ar~~ 247 (293)
T 3d4o_A 213 DVDVCINTIPALVVTANVLAEMPSHTFVIDLASKP 247 (293)
T ss_dssp TCSEEEECCSSCCBCHHHHHHSCTTCEEEECSSTT
T ss_pred CCCEEEECCChHHhCHHHHHhcCCCCEEEEecCCC
Confidence 23999887665433345667789999887665543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=5.2 Score=31.28 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=49.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc--ccccCCCCCCe
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR--HLLLTNPHGST 128 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~ 128 (206)
.+|.-||+|. |..........+....|+++|.+++.++.+.+.- -+.-...+..+ ....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G-----------~~~~~~~~~~~~~~~~a------- 95 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----------IIDEGTTSIAKVEDFSP------- 95 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----------SCSEEESCTTGGGGGCC-------
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC-----------CcchhcCCHHHHhhccC-------
Confidence 5788899885 4433333233333238999999998877765421 01111222111 1223
Q ss_pred eEEEecCChH---HHHHHHHhcccCCcEEEE
Q psy10573 129 RVIQSCWTKE---EYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 129 D~i~~~~~~~---~~~~~~~~~L~~gG~l~~ 156 (206)
|+|+...+.. .+++++...++++.+++-
T Consensus 96 DvVilavp~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 96 DFVMLSSPVRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence 9888866543 355677777888876543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.05 E-value=8 Score=29.77 Aligned_cols=80 Identities=13% Similarity=-0.058 Sum_probs=48.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.+|-.|++. ..+..+++.+ ..+.+|+.++.++..++.+.+.+... ..++.++..|..+.....
T Consensus 30 ~gk~vlVTGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 30 DGRAAVVTGGAS-GIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ------GFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 467788777664 4444444433 24458999999998887777666542 146788888833221100
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-..+..|+++.+..
T Consensus 103 ~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHSSCSEEEECCC
T ss_pred HHhCCCCCEEEECCC
Confidence 00135699988765
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.68 E-value=3.1 Score=32.26 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=55.6
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cccccccccCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~ 126 (206)
-.+.+|+-+|+|. |......+...+ .+|+++|.++...+.+.+ + .+..+. .+..+. + .
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~-~-----------g~~~~~~~~l~~~--l----~ 214 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITE-M-----------GLVPFHTDELKEH--V----K 214 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-T-----------TCEEEEGGGHHHH--S----T
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH-C-----------CCeEEchhhHHHH--h----h
Confidence 3578999999975 555555554443 489999998865544332 1 122221 121111 1 1
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..|+|+...+.+.+.+.....+++|++++-...++
T Consensus 215 ~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~ 249 (300)
T 2rir_A 215 DIDICINTIPSMILNQTVLSSMTPKTLILDLASRP 249 (300)
T ss_dssp TCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTT
T ss_pred CCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCC
Confidence 23999887765433355667889999887666543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=86.19 E-value=3.9 Score=26.13 Aligned_cols=90 Identities=12% Similarity=-0.054 Sum_probs=47.1
Q ss_pred CCeEEEEcccCchHHHHHHHHhC-CC-ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 51 GARILDIGSGSGYLTACLAYMAG-PE-GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
+.+|+-+|+ |..+..+++.+. .+ .+++++|.++...+.... ..+.++..|..+.....-.-..+
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR------------MGVATKQVDAKDEAGLAKALGGF 70 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT------------TTCEEEECCTTCHHHHHHHTTTC
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh------------CCCcEEEecCCCHHHHHHHHcCC
Confidence 467888998 444444443321 22 489999999877766541 24555666632211100000245
Q ss_pred eEEEecCChHHHHHHHHhcccCCcEE
Q psy10573 129 RVIQSCWTKEEYNSWLLDQLVPGGRM 154 (206)
Q Consensus 129 D~i~~~~~~~~~~~~~~~~L~~gG~l 154 (206)
|+|+...+......-+...++.|...
T Consensus 71 d~vi~~~~~~~~~~~~~~~~~~g~~~ 96 (118)
T 3ic5_A 71 DAVISAAPFFLTPIIAKAAKAAGAHY 96 (118)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred CEEEECCCchhhHHHHHHHHHhCCCE
Confidence 99988776543323233333444433
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=86.10 E-value=4.6 Score=33.00 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCe
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~ 128 (206)
..+|+-+|+|. |......+.. .+..|+++|.+++.++.+++. .+.++.+|..+..-+ ...-...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~~------------g~~vi~GDat~~~~L~~agi~~A 69 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKA 69 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHHT------------TCCCEESCTTCHHHHHHTTTTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHhC------------CCeEEEcCCCCHHHHHhcCCCcc
Confidence 35688888864 4443333333 234899999999998887642 355677883222111 0122345
Q ss_pred eEEEecCChHH---HHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|++...-.. ......+.+.|...++..+...
T Consensus 70 ~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~ 105 (413)
T 3l9w_A 70 EVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDV 105 (413)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred CEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 87776544332 2234455667887777766554
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=11 Score=29.51 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=65.3
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc----cc-cCCCCC
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH----LL-LTNPHG 126 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~-~~~~~~ 126 (206)
..||+||||.=.....+.. ++..+++-+| .|.++...++.+...+. ....+.+++..|+.+. .. -.+..+
T Consensus 104 ~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~--~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGV--TPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTC--CCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred CeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCC--CCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 5799999997655333321 2346888899 69999999988864211 1235678888884321 00 001222
Q ss_pred CeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.--++++-..+. .+++.+...+.||+.+++...+..
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~ 222 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH 222 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 334555554442 366777777789999988876653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.64 E-value=6.6 Score=26.75 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=53.7
Q ss_pred CCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCC-HHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-CCCCC
Q psy10573 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHV-MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT-NPHGS 127 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~ 127 (206)
..+|+-+|+ |..+..+++.+. .+..++.+|.+ ++..+...+... ..+.++.+|..+...+. ..-..
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---------DNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---------TTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc---------CCCeEEEcCCCCHHHHHHcChhh
Confidence 356777776 455555544331 23489999997 454444443322 24678888832211110 01134
Q ss_pred eeEEEecCChHH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|.|++...-.. ......+.+.|...++....+..
T Consensus 72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~ 109 (153)
T 1id1_A 72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred CCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 588877654333 22344455566677776655543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.58 E-value=0.76 Score=34.99 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=32.4
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCCh--------------------HHHHHHHHhcccCCcEEEEEe
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.++++|..+... .++++++|+|+.+++. ...++.+.++|+|+|.+++..
T Consensus 6 ~l~~gD~~~~l~-~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 6 KIHQMNCFDFLD-QVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SEEECCHHHHHH-HSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHH-hccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456677332222 1366778888887763 124567789999999998875
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=2.1 Score=39.15 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=35.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
...+++|+.||.|+++.-+.... -.-.++++|+++.+.+.-+.++.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG-~~~vv~avEid~~A~~ty~~N~p 584 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAG-ISDTLWAIEMWDPAAQAFRLNNP 584 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHT-SEEEEEEECSSHHHHHHHHHHCT
T ss_pred CCCeEEEeccCccHHHHHHHHCC-CCceEEEEECCHHHHHHHHHhCC
Confidence 34589999999999999886543 11257899999999888877653
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.38 E-value=6.2 Score=29.93 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=48.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.| .+..+++.+ ..+++|..+|.+++.++.+.+.+...+ .++..+..|..+....
T Consensus 8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g------~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG------YDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 4667775565544 444444433 245699999999988877776665522 3577777883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 81 ~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 81 DAEGIHVDILINNAG 95 (255)
T ss_dssp HHTTCCCCEEEECCC
T ss_pred HHHCCCCcEEEECCC
Confidence 012356799988765
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=84.68 E-value=3.8 Score=30.51 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=52.5
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCC--HHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHV--MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
-.+.+||-+|+|. |..-...+.. .++.|+.++.+ ++....+. . .+++++...+.. ..+
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~~~~~l~~l~~----~--------~~i~~i~~~~~~-~dL---- 89 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPTVSAEINEWEA----K--------GQLRVKRKKVGE-EDL---- 89 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSSCCHHHHHHHH----T--------TSCEEECSCCCG-GGS----
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHH----c--------CCcEEEECCCCH-hHh----
Confidence 3578999999985 3222222222 23578888543 33333322 1 356776655321 111
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..+|+|++...-+.+...+....+ -|+++-.+-.+
T Consensus 90 ~~adLVIaAT~d~~~N~~I~~~ak-~gi~VNvvD~p 124 (223)
T 3dfz_A 90 LNVFFIVVATNDQAVNKFVKQHIK-NDQLVNMASSF 124 (223)
T ss_dssp SSCSEEEECCCCTHHHHHHHHHSC-TTCEEEC----
T ss_pred CCCCEEEECCCCHHHHHHHHHHHh-CCCEEEEeCCc
Confidence 235999998887777777777777 78776655443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=10 Score=28.20 Aligned_cols=80 Identities=10% Similarity=-0.027 Sum_probs=46.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC--C--
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT--N-- 123 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-- 123 (206)
.++++|-.| |+|..+..+++.+. .+.+|+.++.++...+...+.+... ..++.++..|..+..... +
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHHHH
Confidence 345677444 66777766665442 3458999999887666655555431 135778888833221100 0
Q ss_pred ---CCCCeeEEEecCC
Q psy10573 124 ---PHGSTRVIQSCWT 136 (206)
Q Consensus 124 ---~~~~~D~i~~~~~ 136 (206)
..+.+|+++.+..
T Consensus 76 ~~~~~g~id~li~~Ag 91 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAG 91 (276)
T ss_dssp HHHHHSSEEEEEECCC
T ss_pred HHHhcCCCCEEEECCc
Confidence 0135699987654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=84.41 E-value=3.5 Score=41.57 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE-EEEcccccc-cccC
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVAYFWLRH-LLLT 122 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~-~~~~ 122 (206)
.+++|.+||-.|+ | .|..+..+++..| ++|++++.+++..+.+++.+... +...+. ....++.+. ...
T Consensus 1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~G--a~Viat~~s~~k~~~l~~~~~~l-----ga~~v~~~~~~~~~~~i~~~- 1735 (2512)
T 2vz8_A 1664 RMQPGESVLIHSGSGGVGQAAIAIALSRG--CRVFTTVGSAEKRAYLQARFPQL-----DETCFANSRDTSFEQHVLRH- 1735 (2512)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTTC-----CSTTEEESSSSHHHHHHHHT-
T ss_pred cCCCCCEEEEEeCChHHHHHHHHHHHHcC--CEEEEEeCChhhhHHHHhhcCCC-----CceEEecCCCHHHHHHHHHh-
Confidence 3688999998864 3 5778888887754 58999999998888887754210 011110 000111111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.....+|+|+.... ...++...++|+++|+++...
T Consensus 1736 t~g~GvDvVld~~g-~~~l~~~l~~L~~~Gr~V~iG 1770 (2512)
T 2vz8_A 1736 TAGKGVDLVLNSLA-EEKLQASVRCLAQHGRFLEIG 1770 (2512)
T ss_dssp TTSCCEEEEEECCC-HHHHHHHHTTEEEEEEEEECC
T ss_pred cCCCCceEEEECCC-chHHHHHHHhcCCCcEEEEee
Confidence 12235799998665 556788899999999987653
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.89 E-value=6.6 Score=29.94 Aligned_cols=82 Identities=7% Similarity=-0.038 Sum_probs=49.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cc---c---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LL---L--- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~---~--- 121 (206)
.++.+|-.|++ |..+..+++.+ ..+.+|+.++.++...+.+.+.+... ...++.++..|..+. .. +
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~~v~~~~~~ 84 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-----NHENVVFHQLDVTDPIATMSSLADF 84 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----TCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEEccCCCcHHHHHHHHHH
Confidence 35677755654 55555555443 24569999999998777766666541 224688888884332 10 0
Q ss_pred -CCCCCCeeEEEecCCh
Q psy10573 122 -TNPHGSTRVIQSCWTK 137 (206)
Q Consensus 122 -~~~~~~~D~i~~~~~~ 137 (206)
.-..+..|+++.+...
T Consensus 85 ~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 85 IKTHFGKLDILVNNAGV 101 (311)
T ss_dssp HHHHHSSCCEEEECCCC
T ss_pred HHHhCCCCCEEEECCcc
Confidence 0011356999998763
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.89 E-value=5.2 Score=31.87 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..+|+-+|| |..+..+++.+.....++.+|++...++.+++
T Consensus 16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~ 56 (365)
T 3abi_A 16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE 56 (365)
T ss_dssp CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT
T ss_pred ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc
Confidence 457999998 45555555555455589999999887776643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.62 E-value=12 Score=28.17 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=56.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCC------------HHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV------------MELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.++.+|--|++. ..+..+++.+ ..+.+|+.+|.+ ...++.+...+... ..++.++..|..
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~ 81 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT------GRKAYTAEVDVR 81 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT------TSCEEEEECCTT
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc------CCceEEEEccCC
Confidence 356777666654 4444444433 244689999876 55555555444431 246888888833
Q ss_pred cccccC-------CCCCCeeEEEecCCh---------H--------------HHHHHHHhcccCCcEEEEEe
Q psy10573 117 RHLLLT-------NPHGSTRVIQSCWTK---------E--------------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 117 ~~~~~~-------~~~~~~D~i~~~~~~---------~--------------~~~~~~~~~L~~gG~l~~~~ 158 (206)
+..... -.-+..|+++.+... + .+.+.+...++.+|.++...
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 221100 001345999887552 1 12355666677778776653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=83.51 E-value=14 Score=28.71 Aligned_cols=82 Identities=9% Similarity=0.007 Sum_probs=48.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.||--|++. ..+..+++.+ ..+.+|++++.++...+.+.+.+.... ...++.++..|..+...+.
T Consensus 7 ~~k~vlVTGas~-gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (319)
T 3ioy_A 7 AGRTAFVTGGAN-GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG----SGPEVMGVQLDVASREGFKMAADEV 81 (319)
T ss_dssp TTCEEEEETTTS-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEcCCch-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCCeEEEEECCCCCHHHHHHHHHHH
Confidence 356788777654 4444444433 245689999999988777766654311 1136888888833221100
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-..+..|+++.+..
T Consensus 82 ~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 82 EARFGPVSILCNNAG 96 (319)
T ss_dssp HHHTCCEEEEEECCC
T ss_pred HHhCCCCCEEEECCC
Confidence 01245699998765
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=83.11 E-value=1.5 Score=36.17 Aligned_cols=89 Identities=13% Similarity=-0.007 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.-.+++|.-+|.|. |......++.++ .+|+++|+++.....+... .+.+. +..+.. .
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~~------------G~~~~--sL~eal----~-- 265 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAME------------GYQVL--LVEDVV----E-- 265 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT------------TCEEC--CHHHHT----T--
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHHh------------CCeec--CHHHHH----h--
Confidence 34688999999986 666666666554 5899999998665544321 12222 211111 1
Q ss_pred CeeEEEecCChHHHH-HHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYN-SWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~-~~~~~~L~~gG~l~~~~ 158 (206)
..|+|+.......++ ......+|+|++++-..
T Consensus 266 ~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 266 EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp TCSEEEECSSCSCSBCTTTGGGCCTTEEEEECS
T ss_pred hCCEEEECCCCcCccCHHHHhhcCCCcEEEEeC
Confidence 128888765544433 35567788888766554
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=82.46 E-value=13 Score=27.76 Aligned_cols=82 Identities=7% Similarity=-0.033 Sum_probs=47.8
Q ss_pred CCCeEEEEcccCc-hHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc------
Q psy10573 50 PGARILDIGSGSG-YLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------ 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G-~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------ 121 (206)
.++.+|--|++++ ..+..+++.+ ..+++|+.++.+++..+.+.+.+.. ....++.++..|..+....
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQ-----LNQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGG-----GTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCCcEEEEEccCCCHHHHHHHHHH
Confidence 4778887785431 2333333222 1446999999999888887777665 2234678888883221110
Q ss_pred -CCCCCCeeEEEecCC
Q psy10573 122 -TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 -~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 80 ~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHCCCSEEEECCC
T ss_pred HHHHhCCCCEEEeccc
Confidence 001245698887644
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=82.46 E-value=0.93 Score=36.49 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=32.7
Q ss_pred CCCCeEEEEc--cc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 49 KPGARILDIG--SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 49 ~~~~~vLDlG--~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
.++.+||-+| +| .|..+..+++..+ ++|++++.+++.++.+++
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~ 214 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKA 214 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh
Confidence 5788888884 44 3666677777664 489999999999888875
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=82.34 E-value=16 Score=28.51 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAE 89 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~ 89 (206)
..+|.-+|+|. |......+...+....++.+|++++..+
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~ 45 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI 45 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence 46788899986 4433333333333348999999987544
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=82.11 E-value=5 Score=30.01 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=48.2
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.+|-.|++. ..+..+++.+ ..+.+|+.++.+++.++.+.+.+... ..++.++..|..+.....
T Consensus 6 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 6 RNATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA------GGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp CSCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECcCCCHHHHHHHHHHH
Confidence 456777667654 4444444433 24458999999988777776666542 146888888833221100
Q ss_pred CCCCCeeEEEecCC
Q psy10573 123 NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 ~~~~~~D~i~~~~~ 136 (206)
...+..|+++.+..
T Consensus 79 ~~~g~id~lv~nAg 92 (252)
T 3h7a_A 79 DAHAPLEVTIFNVG 92 (252)
T ss_dssp HHHSCEEEEEECCC
T ss_pred HhhCCceEEEECCC
Confidence 00156799988765
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=81.90 E-value=15 Score=27.89 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=44.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.+|-.|++. ..+..+++.+ ..+.+|+.++.+++..+...+.+. .++.++..|..+.....
T Consensus 28 ~gk~vlVTGas~-gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 28 AGKVAIVTGAGA-GIGLAVARRLADEGCHVLCADIDGDAADAAATKIG---------CGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp TTCEEEETTTTS-THHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC---------SSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC---------CcceEEEecCCCHHHHHHHHHHH
Confidence 356777666554 4444444333 245699999999887776655442 35777888832221100
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-.-+..|+++.+..
T Consensus 98 ~~~~g~iD~lvnnAg 112 (277)
T 3gvc_A 98 VAAFGGVDKLVANAG 112 (277)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 00134599988755
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.70 E-value=9.4 Score=28.27 Aligned_cols=80 Identities=19% Similarity=0.032 Sum_probs=47.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.+|-.|++ |..+..+++.+ ..+.+|+.++.+++..+...+.+... ..++.++..|..+.....
T Consensus 8 ~~k~vlITGas-~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T 3qiv_A 8 ENKVGIVTGSG-GGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD------GGTAISVAVDVSDPESAKAMADRT 80 (253)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46677766754 45555554443 24458999999998877776666541 246788888833221100
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-..+..|+++.+..
T Consensus 81 ~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 81 LAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 00134599988764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.57 E-value=14 Score=27.52 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=43.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEE-eCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-----
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT----- 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----- 122 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.+ +.++...+...+.+... ..++.++..|..+.....
T Consensus 7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 79 (259)
T 3edm_A 7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL------GRSALAIKADLTNAAEVEAAISA 79 (259)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT------TSCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 4667786776544 444444433 234588877 66666666555555431 135778888833221100
Q ss_pred --CCCCCeeEEEecCC
Q psy10573 123 --NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 --~~~~~~D~i~~~~~ 136 (206)
-.-+..|+++.+..
T Consensus 80 ~~~~~g~id~lv~nAg 95 (259)
T 3edm_A 80 AADKFGEIHGLVHVAG 95 (259)
T ss_dssp HHHHHCSEEEEEECCC
T ss_pred HHHHhCCCCEEEECCC
Confidence 00135699988754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=81.43 E-value=16 Score=27.93 Aligned_cols=103 Identities=11% Similarity=-0.016 Sum_probs=55.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCC--HHHHHHHHHhhhccCccccCCCceEEEEcccccccccC----
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV--MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT---- 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---- 122 (206)
.++.+|-.|++ |..+..+++.+ ..+.+|+.++.+ +...+...+.+... ..++.++..|..+.....
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC------GRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT------TCCEEECCCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc------CCcEEEEEecCCCHHHHHHHHH
Confidence 45678867755 45555554433 234588888876 33344444433331 136778888832211100
Q ss_pred ---CCCCCeeEEEecCCh---------------H-----------HHHHHHHhcccCCcEEEEEec
Q psy10573 123 ---NPHGSTRVIQSCWTK---------------E-----------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ---~~~~~~D~i~~~~~~---------------~-----------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
-.-+..|+++.+... . .+.+.+...++.+|.|+...-
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 001355998876542 0 133566677777888776543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.26 E-value=14 Score=30.58 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=52.8
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-------C-cccc--CCCceEEEEcccccccc
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-------N-SELL--DQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~-~~~~--~~~~i~~~~~d~~~~~~ 120 (206)
.+|.-||+|. |......... .+..|+.+|.+++.++.+++..... + .... ......+ ..|......
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~~~ 114 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKELST 114 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGGTT
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHHCC
Confidence 4688899986 4433333222 2348999999998888776533210 0 0000 0011222 334211122
Q ss_pred cCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.|+|+..-+- ..+++++...++++.+++.++.
T Consensus 115 -------aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs 151 (463)
T 1zcj_A 115 -------VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 151 (463)
T ss_dssp -------CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred -------CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCC
Confidence 3888876542 3455677778888877665333
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=80.61 E-value=12 Score=28.39 Aligned_cols=80 Identities=14% Similarity=0.044 Sum_probs=48.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|-=|++.| .+..+++.+ ..+++|..+|.+++.++.+.+.+...+ .++.++..|..+....
T Consensus 6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG------KEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 3677776676655 344443332 245699999999998888777776522 4678888883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 79 ~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 79 FETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCc
Confidence 001245699988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 206 | ||||
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 7e-32 | |
| d1r18a_ | 223 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-30 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 6e-18 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 8e-17 | |
| d1jg1a_ | 215 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 4e-16 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-14 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 1e-13 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 1e-11 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-09 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 2e-09 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-08 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-08 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 4e-07 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-07 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 8e-07 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 2e-06 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 5e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-05 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 6e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-04 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 3e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 4e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 4e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 5e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 5e-04 | |
| d2ih2a1 | 223 | c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina | 7e-04 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 9e-04 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.002 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 0.002 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.002 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.002 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 0.004 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 0.004 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 7e-32
Identities = 76/192 (39%), Positives = 101/192 (52%), Gaps = 7/192 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 30 MLATDRSHY---AKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 86
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ V +
Sbjct: 87 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD---GRM 143
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180
I L+DQL PGGR+++PVG Q L DKL DG +I
Sbjct: 144 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SIK 202
Query: 181 TTVVRGVRTNPL 192
+ GV PL
Sbjct: 203 MKPLMGVIYVPL 214
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 109 bits (274), Expect = 1e-30
Identities = 72/197 (36%), Positives = 104/197 (52%), Gaps = 12/197 (6%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ R PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 34 MKETDRKHYSPR---NPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 90
Query: 61 SGYLTACLAYMAGPEG-----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115
SGYLTAC +G R+ G+EH EL S N++ + +LD G++ V
Sbjct: 91 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 150
Query: 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
+ P+ + V + + + L++QL GGR+++PVG Q + DK A+
Sbjct: 151 RKGYPPNAPYNAIHVGAAAP---DTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDAN 207
Query: 176 GYTIVTTVVRGVRTNPL 192
G + T + GV PL
Sbjct: 208 G-KVEMTRLMGVMYVPL 223
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 76.8 bits (188), Expect = 6e-18
Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 29/199 (14%)
Query: 1 MLRVDRKNFFTRVVNEPYR-------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+VDR F + E + ++ I G + ++ ++ ML+ + + G +
Sbjct: 20 FNKVDRSLF----LPENLKDYAYAHTHEALPILPGINTTALNLGIFMLD--ELDLHKGQK 73
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113
+L+IG+G GY TA +A + +V VE ++ + K + N+ L G
Sbjct: 74 VLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130
Query: 114 FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKL 173
+ + T +QL GG M++P+G + Q L + K
Sbjct: 131 EEKPY----------DRVVVWATAPTLLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIKK 179
Query: 174 ADGYTIVTTVVRGVRTNPL 192
+ ++ + V +
Sbjct: 180 GNSPSL--ENLGEVMFGRI 196
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (183), Expect = 8e-17
Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 8/143 (5%)
Query: 22 SRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV
Sbjct: 72 VVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISF 129
Query: 82 EHVMELAESSIKNIDKGNSELL------DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCW 135
E + + + KN V F+ V
Sbjct: 130 EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
Query: 136 TKEEYNSWLLDQLVPGGRMVMPV 158
L GG + V
Sbjct: 190 NPHVTLPVFYPHLKHGGVCAVYV 212
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 71.8 bits (175), Expect = 4e-16
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 15/193 (7%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
L+ R + + + I G +S+PH+ A MLE+ +KPG IL++G+
Sbjct: 30 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEI--ANLKPGMNILEVGT 87
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119
GSG+ A ++ + VY +E + EL E + +N+++ V + +
Sbjct: 88 GSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF 140
Query: 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTI 179
P+ V + L++QL GG++++PVG Q L + K DG I
Sbjct: 141 PPKAPYDVIIVTAGAP---KIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKI 197
Query: 180 VTTVVRGVRTNPL 192
GV PL
Sbjct: 198 --KNHGGVAFVPL 208
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 67.7 bits (165), Expect = 2e-14
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ G + P AQ++ I PGAR+L+ G+GSG LT L GP G+V E
Sbjct: 71 MSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYE 128
Query: 83 HVMELAESSIKNIDKGNSELLDQ--GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEY 140
+ AE + +N+ + D V +A L R + E
Sbjct: 129 QRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD------GSVDRAVLDMLAPWEV 182
Query: 141 NSWLLDQLVPGGRMV 155
+ LV GG ++
Sbjct: 183 LDAVSRLLVAGGVLM 197
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 65.0 bits (157), Expect = 1e-13
Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 17/198 (8%)
Query: 1 MLRVDRKNFFTRVVNEPY------RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARI 54
L + R+ F T+ Y + + S P + A +E + R+
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGM--RV 79
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114
L+IG G+GY A ++ + G +G V VE+ ++ E + +N+++ E V +
Sbjct: 80 LEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE--------NVIFV 131
Query: 115 WLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLA 174
VI +E QL GGR+++P+ + + K
Sbjct: 132 CGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK 191
Query: 175 DGYTIVTTVVRGVRTNPL 192
D Y +V R
Sbjct: 192 DPY-LVGNYKLETRFITA 208
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 60.1 bits (145), Expect = 1e-11
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 22 SRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
R I I S + ++ ++PG IL++G GSG +++ + Y +G + V
Sbjct: 59 GRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVV 116
Query: 82 EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYN 141
E E ++K SE D G V+ + I W +
Sbjct: 117 ----ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWN---HV 169
Query: 142 SWLLDQLVPGGRMV 155
+ + PG
Sbjct: 170 QKIASMMKPGSVAT 183
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 54.1 bits (129), Expect = 2e-09
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
KI I+D G G GYL L + + G++ L + + +
Sbjct: 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 83
Query: 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
++ + + T E ++ + GG+++
Sbjct: 84 GDATEIELNDKYDIAI----CHAFLLHMTTPETMLQKMIHSVKKGGKIIC 129
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 53.6 bits (128), Expect = 2e-09
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ I P + + +L +K G RI+D G GSG + A LA G G+V+ E
Sbjct: 80 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 137
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
E A+ + N+ K +V+ ++ + + + Y
Sbjct: 138 EEFAKLAESNLTKWGLIERVTIKVRDISEGF-------DEKDVDALFLDVPDPWNYIDKC 190
Query: 145 LDQLVPGGRMVM 156
+ L GGR
Sbjct: 191 WEALKGGGRFAT 202
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 51.1 bits (121), Expect = 1e-08
Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 8/130 (6%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ +A + +L+ +KPG RILD+GSGSG + A G G++ +
Sbjct: 18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAK 73
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGG 152
+ ++ A + L L PGG
Sbjct: 74 RRAEELGVSERVHFIHNDAAGYVANEKCDVAA--CVGATWIAGGFAGAEELLAQSLKPGG 131
Query: 153 RMVMPVGEPF 162
M+ +GEP+
Sbjct: 132 IML--IGEPY 139
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.2 bits (122), Expect = 2e-08
Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 13/134 (9%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
P+ + + + + +K G +D+GSG G A G +G E + + ++ +I
Sbjct: 201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTI 257
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS------TRVIQSCW----TKEEYNS 142
++ G F L+ + N + ++ + + +
Sbjct: 258 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 317
Query: 143 WLLDQLVPGGRMVM 156
+L G +++
Sbjct: 318 KILQTAKVGCKIIS 331
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 50.4 bits (119), Expect = 2e-08
Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
G+D+ A+++++ +K +LD+ +G G++ A +V + ++
Sbjct: 1 GSDL------AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDI 49
Query: 88 AESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQ 147
+ + + VQ A + + S
Sbjct: 50 LK--VARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRV 107
Query: 148 LVPGGRMVM 156
L GG++++
Sbjct: 108 LKKGGQLLL 116
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 46.4 bits (109), Expect = 4e-07
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ + ++ L + +D+G G+G +T LA VY ++ E ++
Sbjct: 18 AMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTE 72
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGG 152
N+ + V + L V S +E + D+L PGG
Sbjct: 73 MNLQRHGLG----DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGG 128
Query: 153 RMVMPVGEPFKGQNLTIIDKLAD-GYTIVTTVVRGVRTNPLYRDRF 197
R+++ ++ L D G+ + T + R L R
Sbjct: 129 RIIVTA--ILLETKFEAMECLRDLGFDVNITELNIARGRALDRGTM 172
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 45.7 bits (107), Expect = 8e-07
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 11/124 (8%)
Query: 37 HAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
H L L+ + R+LDIG+G+G+ + GV + + ++
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGV----DATKEMVEV 53
Query: 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGG 152
E + + T + + + L G
Sbjct: 54 ASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG 113
Query: 153 RMVM 156
R ++
Sbjct: 114 RFLL 117
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 8e-07
Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 14/135 (10%)
Query: 35 HIHAQMLELLKD--KIKPGARILDIGSGSGYLT-----ACLAYMAGPEGRVYGVEHVMEL 87
+ ++ ++ K +IL IG G+G + A G VE E
Sbjct: 23 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQ 82
Query: 88 AESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG-------STRVIQSCWTKEEY 140
+ + K ++ + + +L +++
Sbjct: 83 IAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPAT 142
Query: 141 NSWLLDQLVPGGRMV 155
+ L +M+
Sbjct: 143 LKFFHSLLGTNAKML 157
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.3 bits (104), Expect = 2e-06
Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 11/155 (7%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSI 92
+ A +L+ + K++ R+L +G+ SG + LA + EG +Y VE E +
Sbjct: 42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELV 100
Query: 93 KNIDKGNSELLDQGRVQF----VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQL 148
+ + L D + V L + + + + + + ++ +
Sbjct: 101 RERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV--I 158
Query: 149 VPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 183
+ R + EP + +++ ++ + IV
Sbjct: 159 MVKARSIDSTAEP-EEVFKSVLKEMEGDFKIVKHG 192
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.6 bits (102), Expect = 5e-06
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELLD 104
IKPG +L +G SG + ++ + G EG+++G+E V+ ++ L D
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130
Query: 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMV-------MP 157
+ + L+ + + L GG + +
Sbjct: 131 ATKPEEYR------ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSID 184
Query: 158 VGEPFKGQNLTIIDKLADGYTIVTTV 183
V + + + +L++ + ++ +
Sbjct: 185 VTKEPEQVFREVERELSEYFEVIERL 210
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 3/137 (2%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
AD+ ++E + LD+ G+G LT L + V+ E
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQE 70
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLD 146
+ + + + + L+T ST I ++Y + +
Sbjct: 71 MLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSN 130
Query: 147 QLVPGGRMVMPVGEPFK 163
L GG + + +K
Sbjct: 131 HLKEGGVFIFDINSYYK 147
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 4e-05
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 13/145 (8%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+ AQM++ +K + +D+GSG G + +A A YGVE A+ +
Sbjct: 139 LVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVA-AATNCKHHYGVEKADIPAKYAETMD 195
Query: 96 DKGNSELLDQG----RVQFVAYFWLRHLLLTNPHGSTRVIQSC----WTKEEYNSWLLDQ 147
+ + G +L ++ + + +
Sbjct: 196 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN 255
Query: 148 LVPGGRMVMPVGEPFKGQNLTIIDK 172
+ GGR+V +PF N I +
Sbjct: 256 MKEGGRIV--SSKPFAPLNFRINSR 278
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 40.1 bits (92), Expect = 6e-05
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 15/136 (11%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLA----YMAGPEGRVYGVEHVMELA 88
++ + + + PGAR+L G + L+ ++ G E VE
Sbjct: 3 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 62
Query: 89 ESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWT--------KEEY 140
+G+ ++ ++ + L G +E Y
Sbjct: 63 GEQPHITSQGDFKVYAAPGIEIWCGDF--FALTARDIGHCAAFYDRAAMIALPADMRERY 120
Query: 141 NSWLLDQLVPGGRMVM 156
L + ++
Sbjct: 121 VQHLEALMPQACSGLL 136
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 36 IHAQMLE------------LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IH +ML+ I +LD+G G+G L+ A AG + +V GV+
Sbjct: 9 IHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAA-KAGAK-KVLGVDQ 66
Query: 84 --VMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYN 141
++ A I+ ++ L +G+++ V + + + + + +
Sbjct: 67 SEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWMGYFLLFESMLDSVL 125
Query: 142 SWLLDQLVPGGRMV 155
L GG +
Sbjct: 126 YAKNKYLAKGGSVY 139
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 38.2 bits (87), Expect = 3e-04
Identities = 16/125 (12%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSI 92
+I + L + + + + D+G G T + + P ++ G+++ + E
Sbjct: 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR 82
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGG 152
++I +SE+ + + + +++ + + + + + + L P G
Sbjct: 83 QHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKI-YEGLNPNG 141
Query: 153 RMVMP 157
+V+
Sbjct: 142 VLVLS 146
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.8 bits (87), Expect = 4e-04
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IK ++IL +G+ +G + +A + +G VY +E
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIE 105
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 37.9 bits (87), Expect = 4e-04
Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 15/162 (9%)
Query: 28 GADISSPHIHAQML--ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85
G + H L + L ++PG ++LD+G+GSG L + G+ GV+
Sbjct: 96 GMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDP 152
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLL 145
+ + N + + + + P
Sbjct: 153 MVLPQAEANAKRNG--VRPRFLEGSLEAALPFG-----PFDLLVANLYAELHAALAPRYR 205
Query: 146 DQLVPGGRMVMPVGEPFKGQNLTIIDKLAD-GYTIVTTVVRG 186
+ LVPGGR + + K + + + +A G+ + G
Sbjct: 206 EALVPGGRAL--LTGILKDRAPLVREAMAGAGFRPLEEAAEG 245
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 37.6 bits (86), Expect = 5e-04
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 13/161 (8%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102
L++ K G +LD+G G G G YGV ++AE SI + +
Sbjct: 17 LIRLYTKRGDSVLDLGCGKGGDLLKYE--RAGIGEYYGV----DIAEVSINDARVRARNM 70
Query: 103 LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162
+ +V F A + Q + S LD + G F
Sbjct: 71 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 130
Query: 163 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYY 203
I + I+ +G +N Y+ ++ +
Sbjct: 131 -------IMTVPSRDVILERYKQGRMSNDFYKIELEKMEDV 164
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 37.2 bits (85), Expect = 5e-04
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
+H M+ +PG +L++GS G + + + VE E
Sbjct: 7 MHPFMVRAFTPFFRPG-NLLELGSFKGDF---TSRLQEHFNDITCVEASEE 53
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 37.0 bits (84), Expect = 7e-04
Identities = 18/127 (14%), Positives = 29/127 (22%), Gaps = 3/127 (2%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
P + M+ L + G R+L+ G G R GVE + +
Sbjct: 5 PEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 62
Query: 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
LL + F S I ++
Sbjct: 63 AEGILADFLLWEPGEAFD-LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYN 121
Query: 154 MVMPVGE 160
+ E
Sbjct: 122 LYGAFLE 128
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 9e-04
Identities = 25/190 (13%), Positives = 46/190 (24%), Gaps = 36/190 (18%)
Query: 19 RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRV 78
+ + + + + + + LK K G R+ G + + A V
Sbjct: 16 KWVNGKTAFHQEQGHQLLKKHLDTFLK--GKSGLRVFFPLCGKAV---EMKWFADRGHSV 70
Query: 79 YGVEHV------------MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126
GVE + +E I I G + L G
Sbjct: 71 VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD--LPRTNIG 128
Query: 127 STRVIQSCWT--------KEEYNSWLLDQLVPGGRMVM---------PVGEPFKGQNLTI 169
+I ++ Y + L + ++ G PF + I
Sbjct: 129 KFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEI 188
Query: 170 IDKLADGYTI 179
I
Sbjct: 189 ERLFGKICNI 198
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 13/119 (10%), Positives = 24/119 (20%), Gaps = 2/119 (1%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ + G ++DIGSG + + + E K
Sbjct: 36 FNLECLHKTFGPGGLQGDTLIDIGSGPTIYQ--VLAACDSFQDITLSDFTDRNREELEKW 93
Query: 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
+ K V+F R K + +
Sbjct: 94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPL 152
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.002
Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 6/120 (5%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
M L G R+L++G G + + P + +E + + +
Sbjct: 43 MHALAAAASSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT 100
Query: 100 SELLDQGRVQFVAYFWLRH----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMV 155
+++ + L +L + + + + L PGG +
Sbjct: 101 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 35.9 bits (81), Expect = 0.002
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 6/141 (4%)
Query: 27 YGADISSPHIHAQMLE--LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
Y I +E +D + R+LD+ G+G T +A V G++
Sbjct: 16 YRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPT---LELAERGYEVVGLDLH 72
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
E+ + + + N ++ F +T + + S +
Sbjct: 73 EEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM-YFDEEDLRKLFSKV 131
Query: 145 LDQLVPGGRMVMPVGEPFKGQ 165
+ L PGG + F G
Sbjct: 132 AEALKPGGVFITDFPCWFYGG 152
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.9 bits (82), Expect = 0.002
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 36 IHAQMLE------------LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IH +ML+ + +LD+GSG+G L A AG +V G+E
Sbjct: 7 IHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAA-KAGAR-KVIGIEC 64
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 34.6 bits (78), Expect = 0.004
Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
++E + + ILD+G G G + LA + + + +NI N
Sbjct: 44 LVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN 98
Query: 100 SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159
+ D V Y ++ + + + L G + + +
Sbjct: 99 LDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158
Query: 160 EPFKGQNLTIIDKLADGYTIVTTVVR 185
K ++ + D + V TV
Sbjct: 159 --TKQGAKSLAKYMKDVFGNVETVTI 182
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 35.1 bits (80), Expect = 0.004
Identities = 16/123 (13%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 5 DRKNFFTRVVNEPYRIKSRQIGYGADISSPH---------IHAQMLELLKDKIKPGARIL 55
R F + E + + + + ++ +H + L+ + ++L
Sbjct: 78 GRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVL 137
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115
++ +G + +A AG E V V+ + + +N L+Q ++++
Sbjct: 138 NLFGYTGVAS-LVAAAAGAE--VTHVDASKKAIGWAKENQVLAG---LEQAPIRWICEDA 191
Query: 116 LRH 118
++
Sbjct: 192 MKF 194
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 206 | |||
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.98 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.96 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.96 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.95 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.94 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.79 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.77 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.76 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.75 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.69 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.65 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.65 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.65 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.64 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.64 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.64 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.64 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.63 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.62 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.59 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.58 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.54 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.51 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.51 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.5 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.5 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.49 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.48 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.46 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.45 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.45 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.45 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.43 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.4 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.4 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.4 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.39 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.37 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.36 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.36 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.35 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.32 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.32 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.29 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.27 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.21 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.2 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.19 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.13 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.12 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.1 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.08 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.08 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.06 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.05 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.03 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.02 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.01 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.99 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.98 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.92 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.92 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.89 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.84 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.84 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.81 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.75 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.73 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.73 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.63 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.56 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.53 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.49 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.46 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.38 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.11 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 98.1 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.07 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.0 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.98 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.9 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.85 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.82 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.76 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.76 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.72 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.61 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.52 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.45 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.45 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.43 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.43 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.38 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.34 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.25 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.14 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.09 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.01 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.83 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.79 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.78 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.77 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.74 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.71 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.42 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.34 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.27 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.97 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.89 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.63 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.49 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.36 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.18 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.54 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.52 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.5 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.34 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.82 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.79 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.69 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.59 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.21 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.32 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.31 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.21 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.64 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.29 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.25 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.35 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 88.81 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.71 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.54 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 86.63 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.27 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 86.19 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 86.15 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.03 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.59 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 85.15 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 85.09 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.02 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.36 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.59 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.25 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 83.14 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 83.04 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 81.37 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.12 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 81.03 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.95 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 80.67 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 80.66 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.52 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 80.32 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.32 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 80.28 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 80.28 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 80.23 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 80.11 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.6e-32 Score=205.96 Aligned_cols=194 Identities=39% Similarity=0.574 Sum_probs=169.1
Q ss_pred CccccccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEE
Q psy10573 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG 80 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~ 80 (206)
|++|||+.|+|. .+|.|.+++++.++.++.|.+.+.+++.|...++++.+|||+|||+|+.+..+++..++.++|++
T Consensus 30 ~~~vpRe~Fvp~---~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ 106 (224)
T d1i1na_ 30 MLATDRSHYAKC---NPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIG 106 (224)
T ss_dssp HHTSCGGGTCSS---CTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE
T ss_pred HHhCCHHHcCCc---ccCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEE
Confidence 578999999984 48999999999999999999999999999766899999999999999999999998888889999
Q ss_pred EeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 81 VEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 81 iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+|+++++++.|++++...+.......++.++.+|.. .... +.+.||+|++....+++++.+.+.|||||+++++...
T Consensus 107 ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~-~~~~--~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 107 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR-MGYA--EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG-GCCG--GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESC
T ss_pred EcCCHHHHHHHHHhccccCcccccccceEEEEeecc-cccc--hhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEEcc
Confidence 999999999999999864443334567899999832 2233 4567899999999999999999999999999999887
Q ss_pred CCCCeeEEEEEecCCCceEEEEEEeeEEeeecccccccccc
Q psy10573 161 PFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKK 201 (206)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (206)
.+..+.+..+.+...+.|.. ..++++.|.|+.+.+.+|.+
T Consensus 184 ~~~~q~l~~~~k~~~~~~~~-~~l~~v~fvPl~~~~~~~~~ 223 (224)
T d1i1na_ 184 AGGNQMLEQYDKLQDGSIKM-KPLMGVIYVPLTDKEKQWSR 223 (224)
T ss_dssp TTSCEEEEEEEECTTSCEEE-EEEEEECCCBCCCHHHHCCC
T ss_pred CCCcEEEEEEEEeCCCeEEE-EEEeeEEEECCCCchhhccC
Confidence 77778888999988888999 99999999999998877754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.96 E-value=1e-29 Score=192.41 Aligned_cols=185 Identities=38% Similarity=0.584 Sum_probs=156.7
Q ss_pred CccccccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-----C
Q psy10573 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----E 75 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-----~ 75 (206)
|++|||+.|+|+. +|.|.+.+++.++.++.|.+.+.+++.|...++++.+|||+|||+|+.+..+++..++ .
T Consensus 34 ~~~vpRe~Fvp~~---aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~ 110 (223)
T d1r18a_ 34 MKETDRKHYSPRN---PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD 110 (223)
T ss_dssp HHTSCGGGTCSSC---TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT
T ss_pred HHhCCHHHcCCcc---ccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcc
Confidence 6789999999854 8999999999999999999999999999655899999999999999999999887643 3
Q ss_pred ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEE
Q psy10573 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 76 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~ 155 (206)
.+|+++|+++++++.+++++........+..++.++.+|.... .. +.+.||.|++....+.+++.+.+.|++||+++
T Consensus 111 ~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~-~~--~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 111 TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YP--PNAPYNAIHVGAAAPDTPTELINQLASGGRLI 187 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CG--GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEE
T ss_pred cEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc-cc--cccceeeEEEEeechhchHHHHHhcCCCcEEE
Confidence 4899999999999999988765322222346899999993321 22 34567999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeec
Q psy10573 156 MPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 192 (206)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (206)
+........+.+..+.+..++.|.. +.++.+.|.|+
T Consensus 188 ~pvg~~~~~q~l~~i~k~~~g~~~~-~~l~~v~FvPL 223 (223)
T d1r18a_ 188 VPVGPDGGSQYMQQYDKDANGKVEM-TRLMGVMYVPL 223 (223)
T ss_dssp EEESCSSSCEEEEEEEECTTSCEEE-EEEEEECCCCC
T ss_pred EEEecCCCcEEEEEEEEeCCCcEEE-EEEeeEEeecC
Confidence 9988766678899999998888998 99999999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=1.3e-28 Score=185.03 Aligned_cols=181 Identities=27% Similarity=0.348 Sum_probs=157.9
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.+ ..+|.|.+.+++.++.++.|.+.+.+++.+. +.++.+|||+|||+|+.+..+++..+ ++|+
T Consensus 30 ~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g--~~V~ 105 (215)
T d1jg1a_ 30 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVY 105 (215)
T ss_dssp HHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEE
T ss_pred HHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhC--ceeE
Confidence 57899999999998 9999999999999999999999999999998 99999999999999999999998764 4799
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|.++..++.+++++.. .+..|+.++.+|..... . ..+.||.|++....+.+++.+.+.|++||++++...
T Consensus 106 ~ie~~~~l~~~a~~~l~~-----~g~~nv~~~~gd~~~g~-~--~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 106 TIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF-P--PKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp EEESCHHHHHHHHHHHHH-----TTCCSEEEEESCGGGCC-G--GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred EEeccHHHHHHHHHHHHH-----cCCceeEEEECccccCC-c--ccCcceeEEeecccccCCHHHHHhcCCCCEEEEEEc
Confidence 999999999999999988 44579999999933221 1 345669999999999999999999999999999988
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
.....+.+..+.+..+ .|.. +.++.+.|.|+.+.
T Consensus 178 ~~~~~q~l~~~~k~~~-~~~~-~~l~~v~fvPl~g~ 211 (215)
T d1jg1a_ 178 SYHLWQELLEVRKTKD-GIKI-KNHGGVAFVPLIGE 211 (215)
T ss_dssp SSSSCEEEEEEEEETT-EEEE-EEEEEECCCBCBST
T ss_pred cCCccEEEEEEEEECC-EEEE-EEEccEEEEcCCCc
Confidence 7776677777776544 5888 89999999999754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=4.3e-28 Score=182.78 Aligned_cols=184 Identities=22% Similarity=0.275 Sum_probs=150.0
Q ss_pred Cccccccccccccc--cCccccccccc----cCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC
Q psy10573 1 MLRVDRKNFFTRVV--NEPYRIKSRQI----GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (206)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~ 74 (206)
|++|||+.|+|+.+ +.+|.|.+... ..++.++.|.+.+.+++.+. ++++.+|||+|||+|+.+..+++..++
T Consensus 22 ~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~ 99 (213)
T d1dl5a1 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 99 (213)
T ss_dssp HHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred HHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCC
Confidence 57899999999886 56677777653 45677899999999999998 999999999999999999999998888
Q ss_pred CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEE
Q psy10573 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRM 154 (206)
Q Consensus 75 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l 154 (206)
.++|+++|+++.+++.+++++... ...++.++.+|.. ...+ .+++||+|++...++++++.+.++|+|||++
T Consensus 100 ~g~V~~id~~~~~~~~a~~~~~~~-----~~~n~~~~~~d~~-~~~~--~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~l 171 (213)
T d1dl5a1 100 KGLVVSVEYSRKICEIAKRNVERL-----GIENVIFVCGDGY-YGVP--EFSPYDVIFVTVGVDEVPETWFTQLKEGGRV 171 (213)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGG-GCCG--GGCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred CCcEEEeecchhhHHHhhhhHhhh-----cccccccccCchH-Hccc--cccchhhhhhhccHHHhHHHHHHhcCCCcEE
Confidence 889999999999999999999873 3468888888833 2233 4567899999999999999999999999999
Q ss_pred EEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 155 VMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
++.............+.+..+..+.. ...+.++|.|+.+.
T Consensus 172 v~pv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Fvpl~g~ 211 (213)
T d1dl5a1 172 IVPINLKLSRRQPAFLFKKKDPYLVG-NYKLETRFITAGGN 211 (213)
T ss_dssp EEEBCBGGGTBCEEEEEEEETTEEEE-EEEEECCCCBCCGG
T ss_pred EEEECccCCcEEEEEEEEEeCCeEEE-EEEeeEEEEECCCC
Confidence 99876544333333444445566777 78888999998764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.94 E-value=8.8e-27 Score=176.03 Aligned_cols=178 Identities=20% Similarity=0.214 Sum_probs=150.1
Q ss_pred Cccccccccccccc-cCccccc--cccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCce
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIK--SRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR 77 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~ 77 (206)
|++|||+.|+|+.. ..+|.|. +.+++.++.++.|.+.+.+++.+. ++++.+|||+|||+|+.+..+++..+ +
T Consensus 20 ~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~ 94 (224)
T d1vbfa_ 20 FNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---K 94 (224)
T ss_dssp HHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---E
T ss_pred HHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---c
Confidence 57899999999998 8889775 577788999999999999999998 99999999999999999999988653 9
Q ss_pred EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 78 VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 78 v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
|+++|+++..++.|++++.. ..++.++.+|.... .. ..+.||+|++....+++++.+.+.|+|||++++.
T Consensus 95 V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~~~g-~~--~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 95 VVSVEINEKMYNYASKLLSY-------YNNIKLILGDGTLG-YE--EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEESCHHHHHHHHHHHTT-------CSSEEEEESCGGGC-CG--GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred cccccccHHHHHHHHHHHhc-------ccccccccCchhhc-ch--hhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence 99999999999999998764 35899999983221 11 2455799999999999999999999999999998
Q ss_pred ecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 158 VGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
.... ..+.+.++.+.. ..+.. +.++.+.|.|+.+.-
T Consensus 165 vg~~-~~q~l~~i~k~~-~~~~~-~~l~~v~F~pl~g~~ 200 (224)
T d1vbfa_ 165 IGVG-RVQKLYKVIKKG-NSPSL-ENLGEVMFGRIGGLY 200 (224)
T ss_dssp ECSS-SSEEEEEEECCT-TSCEE-EEEEEECCCBCCSTT
T ss_pred EcCC-CceEEEEEEEEC-CceEE-EEeeeEEEEECCCcc
Confidence 7654 457888888765 45888 889999999998754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=7.7e-20 Score=138.98 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+.....+++.+. ++|+.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|++++... +..++.++.+
T Consensus 2 ~~~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~-----~~~~~~~~~~ 71 (234)
T d1xxla_ 2 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEK-----GVENVRFQQG 71 (234)
T ss_dssp HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHH-----TCCSEEEEEC
T ss_pred chHHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccc-----cccccccccc
Confidence 345667788887 9999999999999999999998865 38999999999999999998773 3457999999
Q ss_pred ccccccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
| ....++ ++++||+|++...+++ +++++.++|+|||++++....
T Consensus 72 d-~~~~~~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 72 T-AESLPF--PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp B-TTBCCS--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c-cccccc--cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 9 455677 8999999999887754 679999999999999887554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=2.3e-19 Score=135.70 Aligned_cols=112 Identities=13% Similarity=0.251 Sum_probs=94.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
..++++.+. ++++.+|||||||+|.++..+++.. ++++|+|+|+.+++.|++++.. .+.+++.++.+| .
T Consensus 4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~-----~~~~~i~~~~~d-~ 72 (231)
T d1vl5a_ 4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGD-A 72 (231)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECC-C
T ss_pred HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccc-----cccccccccccc-c
Confidence 456777776 8999999999999999999998764 3999999999999999999877 334689999999 4
Q ss_pred cccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++++||+|++...+++ +++++.++|+|||++++..+..
T Consensus 73 ~~l~~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 73 EQMPF--TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp -CCCS--CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccc--cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 44667 8999999999888754 6799999999999999875543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=5.5e-19 Score=135.80 Aligned_cols=132 Identities=27% Similarity=0.310 Sum_probs=112.2
Q ss_pred cccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
......++..|.....++..+. +.||.+|||+|||+|.++..+++..+|.++++++|+++++++.|++++..... .
T Consensus 72 ~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--~ 147 (264)
T d1i9ga_ 72 SMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--Q 147 (264)
T ss_dssp TSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--S
T ss_pred hccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--C
Confidence 4555678889999999999998 99999999999999999999999999999999999999999999998875210 1
Q ss_pred CCCceEEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
...++.++.+|. ...++ ++++||.|+++.+-+ ..++++.++|||||++++.+++.+
T Consensus 148 ~~~nv~~~~~d~-~~~~~--~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 148 PPDNWRLVVSDL-ADSEL--PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVT 204 (264)
T ss_dssp CCTTEEEECSCG-GGCCC--CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred CCceEEEEeccc-ccccc--cCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccC
Confidence 246899999993 34456 889999999876544 477899999999999999988865
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=4e-19 Score=135.72 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=95.5
Q ss_pred cccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC
Q psy10573 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~ 99 (206)
+.......+.++..|.....++..+. +.||.+|||+|||+|.++..+++..++.++|+++|.++++++.|++++....
T Consensus 57 ~~~~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~ 134 (250)
T d1yb2a1 57 YFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134 (250)
T ss_dssp GHHHHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred HHHhhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc
Confidence 33334455677777888888888887 9999999999999999999999988888999999999999999999997632
Q ss_pred ccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 100 SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 100 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
...++++..+|..+. + ++++||.|+++.+-+ .+++++.++|||||++++.+++.+
T Consensus 135 ----~~~nv~~~~~Di~~~--~--~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i~ 190 (250)
T d1yb2a1 135 ----DIGNVRTSRSDIADF--I--SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFD 190 (250)
T ss_dssp ----CCTTEEEECSCTTTC--C--CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHH
T ss_pred ----CCCceEEEEeeeecc--c--ccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCcC
Confidence 236899999994432 3 678899999876544 477999999999999999888754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=3.2e-18 Score=128.60 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=90.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+...+.++++++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|++++...+ .++.++.+| .
T Consensus 24 ~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d-~ 93 (226)
T d1ve3a1 24 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGD-A 93 (226)
T ss_dssp HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECC-T
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccc------ccccccccc-c
Confidence 44445556566788899999999999999999874 3499999999999999999887632 356788888 4
Q ss_pred cccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
...++ ++++||+|++..++++ +++++.++|+|||++++...+
T Consensus 94 ~~l~~--~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 94 RKLSF--EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp TSCCS--CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccc--cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 44566 8899999999888654 568899999999999988765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=9.2e-18 Score=132.62 Aligned_cols=141 Identities=19% Similarity=0.147 Sum_probs=110.0
Q ss_pred ccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc
Q psy10573 19 RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~ 98 (206)
.+.........++..|.....++..+. +.||.+|||+|||+|.++..+++..++.++|+++|+++++++.|++++...
T Consensus 69 ~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~ 146 (324)
T d2b25a1 69 EDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW 146 (324)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh
Confidence 344445666788899999999999998 999999999999999999999999989999999999999999999998752
Q ss_pred Cc------cccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 99 NS------ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 99 ~~------~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.. ......+++++..|... ..+.++.+.||.|+.+.+-+ ..+.++.++|||||++++.+++.+
T Consensus 147 ~~~~~~~~~~~~~~nv~~~~~di~~-~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~ 216 (324)
T d2b25a1 147 RDSWKLSHVEEWPDNVDFIHKDISG-ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNIT 216 (324)
T ss_dssp HHHHTTTCSSCCCCCEEEEESCTTC-CC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred hhhhhhhhhhccccceeEEecchhh-cccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 11 01224689999999433 22234677899999876543 477899999999999999888764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.5e-17 Score=127.02 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.+.....+.+.+. +.|+.+|||||||+|..+..+++..+ ++++|+|+|+.+++.++++....+. ..+++++.
T Consensus 18 ~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl----~~~v~~~~ 89 (245)
T d1nkva_ 18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIH 89 (245)
T ss_dssp CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred CHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhc----cccchhhh
Confidence 4567777888876 89999999999999999999987653 5999999999999999998877432 25799999
Q ss_pred cccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+|..+ . + ++++||+|++...++ .+++++.++|||||++++..+.
T Consensus 90 ~d~~~-~-~--~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 90 NDAAG-Y-V--ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp SCCTT-C-C--CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hHHhh-c-c--ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 99433 2 3 678899999976654 4779999999999999997653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.74 E-value=1.7e-17 Score=129.30 Aligned_cols=104 Identities=14% Similarity=0.018 Sum_probs=87.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..+ ++|+|+|+|+.+++.|+++....++ ..+++++.+| ....++ ++++
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl----~~~v~~~~~d-~~~l~~--~~~s 135 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGS-FLEIPC--EDNS 135 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECC-TTSCSS--CTTC
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccc----cccccccccc-cccccc--cccc
Confidence 57899999999999999999988753 4899999999999999998876332 2589999999 444567 8999
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...+++ +++++.++|+|||++++..+.
T Consensus 136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence 999999877654 678999999999999987553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=5.1e-17 Score=119.09 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=97.0
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
.+..++...++..+. +.++.+|||+|||+|.++..+++.. ++|+++|+++.+++.|++++...+. ..++++
T Consensus 16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl----~~~v~~ 86 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL----GDNVTL 86 (186)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC----CTTEEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCC----CcceEE
Confidence 456778888888887 8999999999999999999998743 4999999999999999999988442 258999
Q ss_pred EEcccccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecC
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.+|.. ...+ +...||.|+++... ..+++.+.+.|+|||++++....
T Consensus 87 ~~gda~-~~~~--~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 87 MEGDAP-EALC--KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp EESCHH-HHHT--TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred EECchh-hccc--ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence 999933 3334 56788999998764 45778999999999999887654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=3.4e-17 Score=126.20 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=109.7
Q ss_pred cccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC
Q psy10573 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~ 99 (206)
|.........++..|.....++..+. +.|+.+|||+|||+|.++..+++..++.++++++|+++++++.|++++...+
T Consensus 75 d~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g 152 (266)
T d1o54a_ 75 DEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG 152 (266)
T ss_dssp HHHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred HHHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc
Confidence 33344555678889999999999998 9999999999999999999999998888999999999999999999998743
Q ss_pred ccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 100 SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 100 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. ..++.+...|.. ..+ ....+|.|+.+.+-+ .+++++.++|||||++++.+++.+
T Consensus 153 ~----~~~v~~~~~d~~--~~~--~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~ 208 (266)
T d1o54a_ 153 L----IERVTIKVRDIS--EGF--DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTN 208 (266)
T ss_dssp C----GGGEEEECCCGG--GCC--SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred c----ccCcEEEecccc--ccc--cccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCccc
Confidence 2 257788777732 223 667789998876654 578999999999999999888754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=5.3e-17 Score=124.26 Aligned_cols=112 Identities=25% Similarity=0.425 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+...+.+++.+.+...++.+|||+|||+|.++..+++. + ++|+|+|+|+.+++.|++++..++. +.+++.+
T Consensus 104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~------~~~~~~~ 174 (254)
T d2nxca1 104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV------RPRFLEG 174 (254)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC------CCEEEES
T ss_pred cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCC------ceeEEec
Confidence 45677778888777899999999999999999888763 2 4899999999999999999987442 4577888
Q ss_pred ccccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEe
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~ 158 (206)
|... .+ +.++||+|+++...+ .+++.+.++|||||+++++-
T Consensus 175 d~~~--~~--~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 175 SLEA--AL--PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp CHHH--HG--GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc--cc--cccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 8432 23 567889999986654 45678899999999999864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=5.2e-17 Score=125.64 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+...+.+.+... ..++.+|||+|||+|.++..+++.. +...++|+|+|+.+++.|+++. +++.++.+|
T Consensus 69 l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d 137 (268)
T d1p91a_ 69 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVAS 137 (268)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc----------ccccceeee
Confidence 344444444433 3567899999999999999998876 6779999999999999998764 468899999
Q ss_pred cccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
....++ ++++||+|++....++ ++++.++|||||++++.++++.
T Consensus 138 -~~~l~~--~~~sfD~v~~~~~~~~-~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 138 -SHRLPF--SDTSMDAIIRIYAPCK-AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp -TTSCSB--CTTCEEEEEEESCCCC-HHHHHHHEEEEEEEEEEEECTT
T ss_pred -hhhccC--CCCCEEEEeecCCHHH-HHHHHHHhCCCcEEEEEeeCCc
Confidence 455677 8999999999887766 4789999999999999998764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.69 E-value=2.5e-16 Score=118.59 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=90.6
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+...+...+..+++++.+|||+|||+|..+..+++... ++.+++|+|+|+.+++.|++++...+ ...++.+..+|
T Consensus 25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~----~~~~~~~~~~d 100 (225)
T d1im8a_ 25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCND 100 (225)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC----CSSCEEEECSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc----ccchhhhccch
Confidence 44555555665678999999999999999999987642 67799999999999999999887632 12467777776
Q ss_pred cccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.. ++ +.+.+|+|++...++ .++++++++|+|||.+++.....
T Consensus 101 ~~---~~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 101 IR---HV--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp TT---TC--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hh---cc--ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 32 23 566779998876653 37899999999999999875543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=9.5e-17 Score=121.91 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=80.7
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
..+.+++.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+| ....++
T Consensus 34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~-~~~l~~ 98 (246)
T d2avna1 34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK-----------NVVEAK-AEDLPF 98 (246)
T ss_dssp HHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS-----------CEEECC-TTSCCS
T ss_pred HHHHHhcCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccccc-----------cccccc-cccccc
Confidence 334445678899999999999999999874 34999999999999999986432 245677 444566
Q ss_pred CCCCCCeeEEEecC-ChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCW-TKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~-~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++++||+|++.. .++ .+++++.++|+|||++++.+++
T Consensus 99 --~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 99 --PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp --CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 889999999754 444 3678999999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.68 E-value=1.7e-16 Score=121.55 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=84.4
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
++.++.+|||+|||+|..+..+++.. .++++|+|+|+.+++.|++++...+ ...++.+..+|....... ..+
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~--~~~ 92 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMD--LGK 92 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCC--CSS
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcC----CCcceEEEEcchhhhccc--ccc
Confidence 46889999999999999998887753 2389999999999999999886522 124789999994322222 466
Q ss_pred CeeEEEecCChHH----------HHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+||+|++...+++ +++++.++|+|||++++++++.
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 8999999888754 5578899999999999987763
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=2.8e-16 Score=115.81 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=89.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. +.++.+|||+|||+|.++..+++.. + +++++|+|+.+++.+++++..++.+ ..+++++.+|..
T Consensus 41 t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~l~---~~~i~~~~~d~~ 112 (194)
T d1dusa_ 41 TKILVENVV--VDKDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNNLD---NYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTTCT---TSCEEEEECSTT
T ss_pred HHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhCCc---cceEEEEEcchh
Confidence 455666665 6789999999999999999988754 3 8999999999999999998874432 346899999843
Q ss_pred cccccCCCCCCeeEEEecCChH-------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE-------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~-------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+ .+ ++++||+|+++++++ .+++.+.+.|+|||.+++.....
T Consensus 113 ~--~~--~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 113 E--NV--KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp T--TC--TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred h--hh--ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence 2 34 678899999987743 36788899999999998866543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.1e-15 Score=119.11 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=88.8
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. +++|.+|||||||+|.++..+++..+ ++++|+++|+..++.++++....++ ..++++...|..
T Consensus 50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l----~~~v~~~~~d~~ 121 (291)
T d1kpia_ 50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWE 121 (291)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCC----SSCEEEEECCGG
T ss_pred HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhcc----chhhhhhhhccc
Confidence 334444444 78999999999999999999998774 5999999999999999999887443 246777777732
Q ss_pred cccccCCCCCCeeEEEecCChHH---------------HHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE---------------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+ .+++||.|++...+++ +++++.++|+|||++++.+.+.
T Consensus 122 ----~--~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 122 ----E--FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp ----G--CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred ----c--cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 3 5778899999888754 5789999999999999876653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=8.6e-16 Score=117.12 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++.. .+++|+|+|+.+++.|++++...+ .+++++.+|+ ...++ + ++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~-~~l~~--~-~~ 105 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDV-LEIAF--K-NE 105 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCG-GGCCC--C-SC
T ss_pred CCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccccc------ccchheehhh-hhccc--c-cc
Confidence 4566899999999999999998753 489999999999999999987632 3689999994 44444 4 58
Q ss_pred eeEEEecCC-h--------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWT-K--------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~-~--------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++... + ...++++.++|+|||++++...+
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999998643 2 24678999999999999987654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=1.1e-15 Score=112.91 Aligned_cols=100 Identities=17% Similarity=0.034 Sum_probs=80.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.+.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++.... +..++.+...|.. ... ++++||
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~d~~-~~~---~~~~fD 97 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAE-----GLDNLQTDLVDLN-TLT---FDGEYD 97 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT-----TCTTEEEEECCTT-TCC---CCCCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhc-----cccchhhhheecc-ccc---cccccc
Confidence 34599999999999999999854 49999999999999999888763 3457888888832 222 467899
Q ss_pred EEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 130 VIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|++...+++ +++++.++|+|||++++.+...
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999877653 6788999999999999876643
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.8e-16 Score=116.81 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=84.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++.. .+..+++++++|. ...++ ++++|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~-----~~~~~~~f~~~d~-~~~~~--~~~~f 128 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGE-----EGKRVRNYFCCGL-QDFTP--EPDSY 128 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGG-----GGGGEEEEEECCG-GGCCC--CSSCE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccc-----ccccccccccccc-ccccc--ccccc
Confidence 5668999999999999998765442 3899999999999999999876 2335789999994 33445 78899
Q ss_pred eEEEecCChHH--------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|++...+++ +++++.+.|+|||.+++......
T Consensus 129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~ 170 (222)
T d2ex4a1 129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 170 (222)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence 99999887754 56889999999999998865444
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.65 E-value=8.7e-16 Score=117.01 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=85.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+.+.+.....++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|++++...+ .+++++.+|.
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~ 93 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCG
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccC------ccceeeccch
Confidence 3455666666545567899999999999999998754 389999999999999999876522 3689999994
Q ss_pred ccccccCCCCCCeeEEEecC-Ch---------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCW-TK---------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~-~~---------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+ .++ +++||+|++.. .+ ..+++++.+.|+|||.+++.+.+
T Consensus 94 ~~-~~~---~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 94 SN-LNI---NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GG-CCC---SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hh-hcc---cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 32 222 56899998742 22 23678999999999999986653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=9.8e-16 Score=115.25 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhc-cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 35 ~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
.+.+.++.-+.. .+.||.+|||+|||+|..+..+++..+++++|+++|+++.+++.+++++.. ..++..+..
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-------~~~~~~i~~ 129 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILG 129 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEEC
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-------cCCceEEEE
Confidence 345555444432 268999999999999999999999999999999999999999999988765 346777787
Q ss_pred ccccccccCCCCCCeeEEEecCCh----HHHHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTK----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|......+.....++|+|+++... ..+++++.+.|+|||+++++..
T Consensus 130 d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 130 DATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 733333332355788999887553 3367899999999999998764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.8e-15 Score=117.40 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+++|.+|||||||+|.++..+++..+ ++|+|+|+|+..++.++++....+. ..++.+...|..+ .+++
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l----~~~~~~~~~d~~~------~~~~ 117 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWED------FAEP 117 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGG------CCCC
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhcc----ccchhhhhhhhhh------hccc
Confidence 68999999999999999999988764 5999999999999999999887442 2457777666321 3567
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
||.|++...+++ +++++.++|||||++++.+.
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 799999888754 57899999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8.9e-16 Score=115.90 Aligned_cols=124 Identities=15% Similarity=0.004 Sum_probs=94.9
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc----------
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS---------- 100 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~---------- 100 (206)
-..|.+...+.+.+. +.++.+|||+|||+|..+..|++.. .+|+|+|+|+.+++.+++.......
T Consensus 28 ~~~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~ 102 (229)
T d2bzga1 28 QGHQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102 (229)
T ss_dssp TCCHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence 356777777777776 7788999999999999999999753 4999999999999999887653110
Q ss_pred --cccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 101 --ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 101 --~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
......+++++.+|..+..+. ..+.||+|+....++ .+++.+.++|+|||.+++.+...
T Consensus 103 ~~~~~~~~~v~~~~~d~~~l~~~--~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 103 KVFKSSSGNISLYCCSIFDLPRT--NIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp EEEEETTSSEEEEESCGGGGGGS--CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred ceeeecCCcEEEEEcchhhcccc--ccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 001224688999985544445 678899999876653 36689999999999988877653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.64 E-value=1.2e-15 Score=118.70 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=85.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+..+.+|||+|||+|.++..+++..+.+.+++|+|+|+.+++.|++++...+ .+++++.+|. ...++ +++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d~-~~~~~---~~~ 94 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDA-TEIEL---NDK 94 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESCT-TTCCC---SSC
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------cccccccccc-ccccc---cCC
Confidence 5677899999999999999998877556789999999999999999987622 3688999883 33344 357
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...+++ +++++.++|||||.+++..+.
T Consensus 95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999988764 679999999999999987764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.64 E-value=1.1e-15 Score=115.17 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=83.2
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+.... .+.+|||+|||+|.++..+++.. .+|+|+|+|+++++.|+++.. .++.++.++..
T Consensus 9 ~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~- 74 (225)
T d2p7ia1 9 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK---------DGITYIHSRFE- 74 (225)
T ss_dssp HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGG-
T ss_pred HHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc---------ccccccccccc-
Confidence 34445554433 46689999999999999987653 389999999999999998754 36888888833
Q ss_pred ccccCCCCCCeeEEEecCChHH------HHHHHH-hcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE------YNSWLL-DQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~------~~~~~~-~~L~~gG~l~~~~~~~~ 162 (206)
... .+++||+|++...+++ .+.++. ++|+|||.+++.+++..
T Consensus 75 ~~~---~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 75 DAQ---LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp GCC---CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred ccc---cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 222 3678999999988865 556776 78999999999987543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=2.5e-15 Score=116.75 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=84.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+|.+|||||||+|..+..+++..+ ++|+|+++|+..++.++++....+. ..++++..+|... .+++
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~----~~~v~~~~~d~~~------~~~~ 127 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGWEQ------FDEP 127 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCGGG------CCCC
T ss_pred CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhh----hhhhHHHHhhhhc------cccc
Confidence 68999999999999999999998864 6999999999999999998876432 3688999888432 2456
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||.|++...+++ +++++.++|+|||++++.+..
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 799999877654 678999999999999986553
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2e-15 Score=116.32 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=105.2
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
...|+.......-+-.+++|..-..+-..+......+.+|||+|||+|..+..++... |..+++++|+|+.+++.|+++
T Consensus 73 ~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 73 VREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHH
T ss_pred cEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHH
Confidence 4456666666666777777776544444444434667899999999999999998877 788999999999999999999
Q ss_pred hhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHHH
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNSW 143 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~~ 143 (206)
+... +..+++++.+|+.+ ++ ++++||+|++|++. ..+++.
T Consensus 152 a~~~-----~~~~v~~~~~d~~~--~~--~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~ 222 (274)
T d2b3ta1 152 AQHL-----AIKNIHILQSDWFS--AL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ 222 (274)
T ss_dssp HHHH-----TCCSEEEECCSTTG--GG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH
T ss_pred HHHh-----Ccccceeeeccccc--cc--CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHH
Confidence 9873 34579999999533 23 56789999999873 125577
Q ss_pred HHhcccCCcEEEEEecCC
Q psy10573 144 LLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 144 ~~~~L~~gG~l~~~~~~~ 161 (206)
+.+.|+|||.+++.....
T Consensus 223 a~~~L~~~G~l~lEig~~ 240 (274)
T d2b3ta1 223 SRNALVSGGFLLLEHGWQ 240 (274)
T ss_dssp HGGGEEEEEEEEEECCSS
T ss_pred HHHhcCCCCEEEEEECch
Confidence 788999999999976543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=1.5e-15 Score=113.10 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=82.1
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.++||.+|||+|||+|+.+..+++.. +.++|+|+|+|+.+++.++++... ..++.++.+|......+.....
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~-------~~ni~~i~~d~~~~~~~~~~~~ 124 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVE 124 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhc-------cCCceEEEeeccCccccccccc
Confidence 36899999999999999999999888 567999999999999999988765 2588999988433222211334
Q ss_pred CeeEEEecCCh----HHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTK----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+|+.+... ..++.++.+.|||||.+++...
T Consensus 125 ~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 125 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 67887765432 2367899999999999988754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=3.4e-15 Score=114.42 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..++..... +|+++|+++.+++.|++++.. .++++++.+|. ...++ ++++|
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~-~~~~~--~~~~f 159 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAG-------MPVGKFILASM-ETATL--PPNTY 159 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCG-GGCCC--CSSCE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccc-------cccceeEEccc-ccccc--CCCcc
Confidence 56789999999999999988765532 899999999999999988754 34688999883 34444 78899
Q ss_pred eEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|++...+++ +++++.+.|+|||.|++.....
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~ 200 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99999988764 4688999999999999875543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=1.2e-15 Score=111.85 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc-------ccCCC
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE-------LLDQG 106 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-------~~~~~ 106 (206)
|.+.+ ....|. +.|+.+|||+|||+|..+..|++.. .+|+|+|+|+.+++.|++++...... .....
T Consensus 7 ~~~~~-~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T d1pjza_ 7 KDLQQ-YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP 80 (201)
T ss_dssp HHHHH-HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred HHHHH-HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence 34333 344454 7899999999999999999999864 49999999999999999988642210 01123
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++++.+|.....+. ...+||+|++...++ .+++.+.+.|||||.+++.....
T Consensus 81 ~~~~~~~d~~~l~~~--~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 81 GIEIWCGDFFALTAR--DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp SSEEEEECCSSSTHH--HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccceecccccccccc--cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 456777774332223 345679999877754 35688999999999988776554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=1.8e-15 Score=114.19 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhc-cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 35 ~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
.+.+.+...+.. .+.||.+|||+|||+|+.+..+++.. +++.|+|+|+|+.+++.+++.... .+++..+.+
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~ 129 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE-------RENIIPILG 129 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEEC
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEE
Confidence 345555554432 25899999999999999999999875 778999999999999999988654 357778888
Q ss_pred ccccccccCCCCCCeeEE--EecCC----hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVI--QSCWT----KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i--~~~~~----~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|......+ .+..+|++ +.... ...++.++.+.|||||.+++....
T Consensus 130 d~~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 130 DANKPQEY--ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp CTTCGGGG--TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eeccCccc--ccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence 84444444 44444554 43322 233678999999999999887543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=4.2e-15 Score=110.30 Aligned_cols=93 Identities=23% Similarity=0.155 Sum_probs=77.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+. +++|+|+|+.+++.++++ ++.++.+| ....++ ++++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~------------~~~~~~~d-~~~l~~--~~~~ 91 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR------------GVFVLKGT-AENLPL--KDES 91 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT------------TCEEEECB-TTBCCS--CTTC
T ss_pred hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc------------cccccccc-cccccc--cccc
Confidence 3556789999999999877652 568999999999999863 57889998 445566 8899
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...+++ +++++.++|+|||.+++..++..
T Consensus 92 fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 92 FDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ccccccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence 999999888765 67899999999999999987654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=8.9e-15 Score=108.29 Aligned_cols=105 Identities=10% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+...|||||||+|.++..+++.. |...++|+|+++.++..+.++.... +..|+.++.+|...... .++++++
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~-----~l~Nv~~~~~Da~~l~~-~~~~~~~ 100 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDS-----EAQNVKLLNIDADTLTD-VFEPGEV 100 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHS-----CCSSEEEECCCGGGHHH-HCCTTSC
T ss_pred CCCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHH-----hccCchhcccchhhhhc-ccCchhh
Confidence 345689999999999999999886 8889999999999999999998873 34689999999443222 1389999
Q ss_pred eEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|.|++..+. +.+++.+.++|||||+|++.+-.
T Consensus 101 d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 101 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred hccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 999887654 24789999999999999988744
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.3e-14 Score=108.09 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+...+.+.+ ..+|.+|||||||+|..+..+++.. + .+++++|+|+.+++.|++++... ..++.++..++
T Consensus 42 ~~~~la~~~---~~~g~~VLdIGcG~G~~a~~~a~~~-~-~~v~~id~s~~~~~~a~~~~~~~------~~~~~~~~~~~ 110 (229)
T d1zx0a1 42 YMHALAAAA---SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLW 110 (229)
T ss_dssp HHHHHHHHH---TTTCEEEEEECCTTSHHHHHHHTSC-E-EEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCH
T ss_pred HHHHHHHhh---ccCCCeEEEeeccchHHHHHHHHcC-C-CeEEEeCCCHHHHHHHHHHhhhc------ccccccccccc
Confidence 444454444 4678899999999999999998753 2 48999999999999999998762 24577777773
Q ss_pred cc-ccccCCCCCCeeEEEecCCh-----------HHHHHHHHhcccCCcEEEEE
Q psy10573 116 LR-HLLLTNPHGSTRVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~-~~~~~~~~~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~ 157 (206)
.. ...+ ++++||.|+.+... ..+++++.++|||||+|++.
T Consensus 111 ~~~~~~~--~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 111 EDVAPTL--PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp HHHGGGS--CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccc--ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 22 2234 88899999865431 23668899999999999764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=3.9e-14 Score=112.04 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=91.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
+.....+...+.++.+|||+|||+|.++..++... . .+|+++|+++.+++.+++++..++.+ .+++++.+|..+
T Consensus 133 r~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~g-a-~~V~~vD~s~~al~~a~~N~~~ngl~----~~~~~~~~d~~~ 206 (324)
T d2as0a2 133 RENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAG-A-DEVIGIDKSPRAIETAKENAKLNGVE----DRMKFIVGSAFE 206 (324)
T ss_dssp HHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHH
T ss_pred hhHHHHHHhhcCCCCeeecccCcccchhhhhhhcC-C-cEEEeecCCHHHHHHHHHHHHHcCCC----ccceeeechhhh
Confidence 33344445557889999999999999999988653 2 38999999999999999999985532 578999999332
Q ss_pred c---cccCCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 H---LLLTNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~---~~~~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. ... .+.+||+|+++++. ..++..+.++|+|||+|+.++.+..
T Consensus 207 ~~~~~~~--~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 207 EMEKLQK--KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp HHHHHHH--TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred hhHHHHh--ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 2 222 45678999998883 3366788899999999999887764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.51 E-value=1.1e-13 Score=102.23 Aligned_cols=104 Identities=10% Similarity=0.123 Sum_probs=85.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
....|||||||+|.++..+++.. |...++|+|+++.++..+.++... .+..|+.++.+|...... .++++++|
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~-----~~l~Ni~~~~~da~~l~~-~~~~~~~~ 103 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE-----VGVPNIKLLWVDGSDLTD-YFEDGEID 103 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH-----HCCSSEEEEECCSSCGGG-TSCTTCCS
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhh-----hccccceeeecCHHHHhh-hccCCcee
Confidence 45689999999999999999887 778999999999999999888877 334689999999443222 24889999
Q ss_pred EEEecCCh--------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 130 VIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 130 ~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.|++..+. ..+++.+.++|+|||.|.+.+-.
T Consensus 104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 99887653 34789999999999999987744
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.51 E-value=1.5e-13 Score=104.92 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++++...+. ..+++++.+|..+ + ..++
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~rv~~~~~D~~~--~---~~~~ 146 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFE--P---LPRK 146 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTS--C---CSSC
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhc----ccchhhccccchh--h---cccc
Confidence 4667899999999999999999887 7789999998 6688999988876332 3589999999432 1 2346
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
||+|++...+++ +++++.++|+|||++++...
T Consensus 147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 799999888753 57899999999999998754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=1.3e-13 Score=97.36 Aligned_cols=114 Identities=16% Similarity=0.053 Sum_probs=85.4
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+...|... -.+.+|||+|||+|.++..++.+. . .+|+++|.++.+++.+++++...+. ..+++++++|+...
T Consensus 4 ~~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rg-a-~~v~~ve~~~~a~~~~~~n~~~~~~----~~~~~ii~~D~~~~ 76 (152)
T d2esra1 4 AIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRG-M-SAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEAERA 76 (152)
T ss_dssp HHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTT-C-CEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCHHHH
T ss_pred HHHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhC-c-ceeeeehhchhhhhhhhhhhhhccc----ccchhhhccccccc
Confidence 344555432 358999999999999999887654 3 3999999999999999999987443 25699999995444
Q ss_pred cccCCCCCCeeEEEecCChHH-----HHHHHH--hcccCCcEEEEEecCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE-----YNSWLL--DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~-----~~~~~~--~~L~~gG~l~~~~~~~ 161 (206)
... ..++||+|+++++... .++.+. +.|+++|++++.....
T Consensus 77 l~~--~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~ 124 (152)
T d2esra1 77 IDC--LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 124 (152)
T ss_dssp HHH--BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ccc--cccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence 444 5678899999988532 344443 4689999999876543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=7.4e-14 Score=108.84 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=80.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+.+.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|+++....... .......+...++.
T Consensus 45 ~~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 45 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWL 118 (292)
T ss_dssp HHHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGG
T ss_pred HHHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccc-cccceeeeeecccc
Confidence 344555555 4567899999999999999998753 49999999999999999987653221 00112344444422
Q ss_pred cc-cccCCCCCCeeEEEecC-ChH-------------HHHHHHHhcccCCcEEEEEecC
Q psy10573 117 RH-LLLTNPHGSTRVIQSCW-TKE-------------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 117 ~~-~~~~~~~~~~D~i~~~~-~~~-------------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.. ..+ ...++||.|++.. .+. .+++++.++|||||++++...+
T Consensus 119 ~~~~~~-~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 119 TLDKDV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp GHHHHS-CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccccc-CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 11 111 1356789998743 222 3789999999999999997653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=1.1e-13 Score=109.12 Aligned_cols=104 Identities=19% Similarity=0.096 Sum_probs=84.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc---cccCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH---LLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~ 125 (206)
..+.+|||+|||+|.++..++... .+|+++|+|+.+++.+++++..++ ..+++++.+|..+. ... ..
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~~i~~d~~~~~~~~~~--~~ 213 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEK--EG 213 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHH--TT
T ss_pred hCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcC-----CCCcceeeccHHHHhhhhHh--hh
Confidence 468999999999999999887643 399999999999999999999844 45799999993322 222 45
Q ss_pred CCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++||+|+++++. ..++..+.++|+|||+|+.++.+..
T Consensus 214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 688999999873 2366788999999999999888754
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.48 E-value=1.8e-13 Score=107.70 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=87.5
Q ss_pred hhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cC
Q psy10573 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LT 122 (206)
Q Consensus 44 l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 122 (206)
+...+.++.+|||++||+|.++..++... ..+|+++|+++.+++.+++++..++. +..+++++.+|..+... ..
T Consensus 138 l~~~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~~~i~~d~~~~l~~~~ 212 (317)
T d2b78a2 138 LINGSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFKYAR 212 (317)
T ss_dssp HHHTTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHHHHH
T ss_pred HHHHhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcc---cCcceEEEEccHHHHHHHHH
Confidence 33346789999999999999998877532 23899999999999999999987553 23579999999433221 11
Q ss_pred CCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 123 NPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.....||+|+++++. ..++..+.++|+|||+|++++.+..
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 135678999999882 3477888999999999999888754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=2.9e-13 Score=97.39 Aligned_cols=121 Identities=18% Similarity=0.072 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
....+.+.+..++...+..+.+|||+|||+|.++..++... ++++++|.++.+++.+++++...+.+ .++...
T Consensus 23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~~~~~----~~v~~~ 95 (171)
T d1ws6a1 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGLG----ARVVAL 95 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTCC----CEEECS
T ss_pred CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHhhccc----cceeee
Confidence 33445566667776667889999999999999999887753 48999999999999999999874321 234444
Q ss_pred Eccc-ccccccCCCCCCeeEEEecCCh----HHHHHHHH--hcccCCcEEEEEecCC
Q psy10573 112 AYFW-LRHLLLTNPHGSTRVIQSCWTK----EEYNSWLL--DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~-~~~~~~~~~~~~~D~i~~~~~~----~~~~~~~~--~~L~~gG~l~~~~~~~ 161 (206)
..|. ...... ...+||+|++++++ ...+..+. ..|+|||++++.....
T Consensus 96 ~~d~~~~~~~~--~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 96 PVEVFLPEAKA--QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred ehhcccccccc--cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 4441 112223 56678999999874 23444443 4689999998876543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=5.5e-13 Score=97.45 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.+...+++.+. +.++..+||++||+|.++..+++.. ++++++++|.++.+++.+++++.... .++.++.+
T Consensus 9 pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~ 79 (192)
T d1m6ya2 9 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKV 79 (192)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEEC
T ss_pred chHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc------ccccchhH
Confidence 557888899987 8899999999999999999999988 77899999999999999999987622 47999998
Q ss_pred cccccccc--CCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 114 FWLRHLLL--TNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 114 d~~~~~~~--~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++.+...+ .+..+++|.|+.+.++ ...+..+.++|+|||++++.++...
T Consensus 80 ~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~ 145 (192)
T d1m6ya2 80 SYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL 145 (192)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred HHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence 84332110 1256789999988664 1255778899999999999887653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.9e-13 Score=102.55 Aligned_cols=108 Identities=16% Similarity=0.001 Sum_probs=78.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh-----CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce--EEEEccccc----
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA-----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV--QFVAYFWLR---- 117 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~-----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i--~~~~~d~~~---- 117 (206)
++..+|||+|||+|.++..+++.+ +....++++|+|+.+++.+++++.... ...++ .+...+..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS----NLENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC----SCTTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc----ccccccccchhhhhhhhcch
Confidence 344589999999999988876643 123467999999999999999876521 12333 344433211
Q ss_pred -ccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 -HLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 -~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..+. ++++||+|++...+++ .++++.++|+|||.+++.++++.
T Consensus 115 ~~~~~--~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 115 MLEKK--ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp HTTSS--SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred hcccC--CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 1233 6889999999888754 77999999999999999887654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4e-13 Score=100.22 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=95.2
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
+.....|.....+...+. ....++|||+|||+|+.+..++..+.++++++++|.+++..+.|++++...+. ..+
T Consensus 39 ~~~~i~~~~g~lL~~L~~--~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~----~~~ 112 (219)
T d2avda1 39 GDSMMTCEQAQLLANLAR--LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHK 112 (219)
T ss_dssp GGGSCCHHHHHHHHHHHH--HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTT
T ss_pred CCcccCHHHHHHHHHHHH--ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc----cce
Confidence 333455655444444443 56788999999999999999998886688999999999999999999987443 257
Q ss_pred eEEEEcccccccc---cCCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEEec
Q psy10573 108 VQFVAYFWLRHLL---LTNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 108 i~~~~~d~~~~~~---~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~ 159 (206)
++++.+|..+..+ .....++||+|+.+..-.. +++.+.+.|+|||++++--.
T Consensus 113 i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 113 IDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 9999999433221 1124678899999877543 56788999999999988533
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.6e-13 Score=106.56 Aligned_cols=121 Identities=20% Similarity=0.124 Sum_probs=88.6
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc----cccCCCc
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS----ELLDQGR 107 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~~~~~ 107 (206)
..+.....+++.+. +.++..|||+|||+|..+..+++.. +..+++|+|+++.+++.|++....... ......+
T Consensus 135 ~~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp CCHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 35667778888876 8999999999999999999998776 445899999999999999887654110 0012457
Q ss_pred eEEEEcccccccccCCCCC--CeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEe
Q psy10573 108 VQFVAYFWLRHLLLTNPHG--STRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~--~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.++++|+.+ .++ .+. ..|+|+++... ...+.++.+.|||||+++...
T Consensus 212 i~~~~gd~~~-~~~--~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 212 YTLERGDFLS-EEW--RERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp EEEEECCTTS-HHH--HHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eEEEECcccc-ccc--ccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 9999999432 222 222 23788875443 346688899999999998753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.43 E-value=1e-12 Score=100.41 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=81.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|||||||+|.++..+++.. |+.+++++|+ +++++.+++++...+. ..++.++.+|..+ +. + .+
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~----~~ri~~~~~d~~~--~~--p-~~ 147 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFK--PL--P-VT 147 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTS--CC--S-CC
T ss_pred CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCC----cceeeeeeeeccc--cc--c-cc
Confidence 4566899999999999999999887 7889999997 7789999988876332 3579999888432 22 3 35
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|+|++...+++ +++++.++|+|||++++...
T Consensus 148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 799999888753 67899999999999998754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.40 E-value=2e-12 Score=100.66 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=84.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+.+.+. ....+.+|||++||+|.++..++... ++|++||.|+.+++.|++++..++.+ ..+++++++|+
T Consensus 119 nr~~~~~~~~-~~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~---~~~~~~i~~D~ 191 (309)
T d2igta1 119 HWEWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDA 191 (309)
T ss_dssp HHHHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCH
T ss_pred HHHHHHHHHh-hccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhccc---CCcEEEEeCCH
Confidence 3444444443 24668899999999999999988643 48999999999999999999875432 34699999994
Q ss_pred ccccc-cCCCCCCeeEEEecCCh----------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLL-LTNPHGSTRVIQSCWTK----------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~-~~~~~~~~D~i~~~~~~----------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..... .......||+|+++++. ..+.+.+..+|+|||.+++.+.+
T Consensus 192 ~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 32211 00134567999998772 22556778899999875555443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-13 Score=105.24 Aligned_cols=122 Identities=16% Similarity=0.025 Sum_probs=80.4
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC------------
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD------------ 104 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~------------ 104 (206)
...+.+.+.....++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++.........
T Consensus 38 ~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (257)
T d2a14a1 38 LECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG 115 (257)
T ss_dssp HHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhcc
Confidence 344444444334567899999999999887665432 227999999999999999988753211000
Q ss_pred ------------CCce-EEEEccccc---ccccCCCCCCeeEEEecCChHH----------HHHHHHhcccCCcEEEEEe
Q psy10573 105 ------------QGRV-QFVAYFWLR---HLLLTNPHGSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 105 ------------~~~i-~~~~~d~~~---~~~~~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~ 158 (206)
...+ .....+... ..++ +.++||+|++...+++ +++++.++|||||.+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 116 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp CGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchHHHHHHHHhhhhhcccccccccccccccc--cCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 0001 111111111 1233 7889999999888765 4588999999999999987
Q ss_pred cCCC
Q psy10573 159 GEPF 162 (206)
Q Consensus 159 ~~~~ 162 (206)
+...
T Consensus 194 ~~~~ 197 (257)
T d2a14a1 194 TLRL 197 (257)
T ss_dssp ESSC
T ss_pred eccc
Confidence 7554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1.2e-12 Score=103.50 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++++|||+|||+|.++..+++.. . .+|+++|.++ ++..+++....++. ..+++++.+| ....++ ++++
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~G-a-~~V~avd~s~-~~~~a~~~~~~~~~----~~~i~~i~~~-~~~l~~--~~~~ 105 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHG-A-KHVIGVDMSS-IIEMAKELVELNGF----SDKITLLRGK-LEDVHL--PFPK 105 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTC-C-SEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESC-TTTSCC--SSSC
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhC-C-CEEEEEeCCH-HHHHHHHHHHHhCc----cccceEEEee-hhhccC--cccc
Confidence 3578999999999999998888754 2 3899999987 56777777766332 3679999998 444455 7889
Q ss_pred eeEEEecCCh---------HHHHHHHHhcccCCcEEE
Q psy10573 128 TRVIQSCWTK---------EEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 128 ~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~ 155 (206)
||+|++.... ..++....++|||||+++
T Consensus 106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9999986442 346677789999999885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.1e-12 Score=101.35 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++++|||+|||+|.++..+++.. . .+|+++|.++.+... ++....++ ...++.++.+| .....+ +.++
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~G-a-~~V~aid~s~~~~~a-~~~~~~~~----~~~~i~~~~~~-~~~l~~--~~~~ 102 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAG-A-KKVLGVDQSEILYQA-MDIIRLNK----LEDTITLIKGK-IEEVHL--PVEK 102 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEESSTHHHHH-HHHHHHTT----CTTTEEEEESC-TTTSCC--SCSC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcC-C-CEEEEEeCHHHHHHH-HHHHHHhC----CCccceEEEee-HHHhcC--cccc
Confidence 4578999999999999999888754 3 389999999987654 44443322 23689999998 344444 7789
Q ss_pred eeEEEecCCh---------HHHHHHHHhcccCCcEEEE
Q psy10573 128 TRVIQSCWTK---------EEYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 128 ~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~ 156 (206)
||+|++.... +.++....+.|+|||+++.
T Consensus 103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9999986443 3455667789999998863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=1.5e-12 Score=99.53 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=82.5
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+.++.+|||+|||+|.++..+++.. .++|+++|+++.+++.+++++..++.+ .+++++.+|..+. .+.+
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~----~~v~~~~~D~~~~----~~~~ 173 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDF----PGEN 173 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTC----CCCS
T ss_pred hcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCC----ceEEEEEcchHHh----ccCC
Confidence 36889999999999999999998763 359999999999999999999985543 5699999994321 2456
Q ss_pred CeeEEEecCCh--HHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.||.|+++.+. ..+++.+.+.|++||++.+..
T Consensus 174 ~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 174 IADRILMGYVVRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp CEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence 78999997653 457788889999999986543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=5.9e-12 Score=96.48 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=96.6
Q ss_pred cCccccccccccCccccCcHHHHHH---HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQ---MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a 91 (206)
+..|+........+-.+++|..-.. +.+... ..+...++|+|||+|..+..+++ . +..+|+++|+|+.+++.|
T Consensus 74 ~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~--~~~~~~vld~g~GsG~i~~~la~-~-~~~~v~a~Dis~~Al~~A 149 (271)
T d1nv8a_ 74 EKEFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAK-F-SDAIVFATDVSSKAVEIA 149 (271)
T ss_dssp EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHH-H-SSCEEEEEESCHHHHHHH
T ss_pred cEEEeeeEEEEecCccCchhhhhhhhhhhhhhhc--cccccEEEEeeeeeehhhhhhhh-c-ccceeeechhhhhHHHHH
Confidence 4556666666666777777764332 222222 13456899999999999988875 4 677999999999999999
Q ss_pred HHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------------------HHHHHHHH
Q psy10573 92 IKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------------------EEYNSWLL 145 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------------------~~~~~~~~ 145 (206)
++|+..++. ..++.+..+|+.+..+. ..++||+|++|++. ..+-+-+.
T Consensus 150 ~~Na~~~~~----~~~~~i~~~~~~~~~~~--~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~ 223 (271)
T d1nv8a_ 150 RKNAERHGV----SDRFFVRKGEFLEPFKE--KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFG 223 (271)
T ss_dssp HHHHHHTTC----TTSEEEEESSTTGGGGG--GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHH
T ss_pred HHHHHHcCC----CceeEEeeccccccccc--ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHH
Confidence 999987443 24677788885544333 45788999999883 11113345
Q ss_pred hcccCCcEEEEEecCC
Q psy10573 146 DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 146 ~~L~~gG~l~~~~~~~ 161 (206)
+.|+|||.+++.....
T Consensus 224 ~~L~~~G~l~~Eig~~ 239 (271)
T d1nv8a_ 224 RYDTSGKIVLMEIGED 239 (271)
T ss_dssp HCCCTTCEEEEECCTT
T ss_pred HhcCCCCEEEEEECHH
Confidence 6799999999887654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.36 E-value=2.8e-12 Score=95.99 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=90.5
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|.. ..++..+.+ .....+|||+|+++|+.+..++..++++++++++|.++...+.|++++...+. ..+++++
T Consensus 43 ~~~~~-g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~----~~~i~~~ 116 (227)
T d1susa1 43 TSADE-GQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFR 116 (227)
T ss_dssp CCHHH-HHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEE
T ss_pred cCHHH-HHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc----ccceeee
Confidence 33443 334444332 45688999999999999999999887788999999999999999999987543 2579999
Q ss_pred Ecccccccc----cCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEE
Q psy10573 112 AYFWLRHLL----LTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 112 ~~d~~~~~~----~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~ 157 (206)
.++..+..+ -....++||+|+++..-. .+++.+.+.|+|||++++-
T Consensus 117 ~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 117 EGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp ESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred ehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 999332211 000245789999987654 4668889999999999886
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.5e-12 Score=99.90 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc----------
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL---------- 103 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~---------- 103 (206)
+.....+.+.+......+.++||+|||+|.++...+.... .+|+++|+|+.+++.+++++........
T Consensus 38 ~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~ 115 (263)
T d2g72a1 38 PWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL 115 (263)
T ss_dssp HHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence 3445555565553345678999999999987755443332 2899999999999999988764210000
Q ss_pred ---------------CCCceEEEEccccccccc---CCCCCCeeEEEecCChHH----------HHHHHHhcccCCcEEE
Q psy10573 104 ---------------DQGRVQFVAYFWLRHLLL---TNPHGSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMV 155 (206)
Q Consensus 104 ---------------~~~~i~~~~~d~~~~~~~---~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~ 155 (206)
..........|.....++ ...+++||+|++...+++ .++++.++|||||.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li 195 (263)
T d2g72a1 116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195 (263)
T ss_dssp HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 000112333442222111 125678999999887754 4578899999999999
Q ss_pred EEecCC
Q psy10573 156 MPVGEP 161 (206)
Q Consensus 156 ~~~~~~ 161 (206)
+.....
T Consensus 196 ~~~~~~ 201 (263)
T d2g72a1 196 LIGALE 201 (263)
T ss_dssp EEEEES
T ss_pred EecccC
Confidence 876643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=3.7e-12 Score=94.69 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|...+.+...+. ...+.+|||+|||+|+.+..+++.++++++++++|+++...+.+++++...+. ..+++++.+
T Consensus 42 ~~~G~lL~~lv~--~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl----~~~i~l~~G 115 (214)
T d2cl5a1 42 DAKGQIMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL----QDKVTILNG 115 (214)
T ss_dssp HHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEES
T ss_pred HHHHHHHHHHHH--hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC----Cccceeeec
Confidence 433344444443 34568999999999999999998876778999999999999999999987443 257999999
Q ss_pred ccccccc-c--CCCCCCeeEEEecCChHH-----HHHHHHhcccCCcEEEEE
Q psy10573 114 FWLRHLL-L--TNPHGSTRVIQSCWTKEE-----YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 114 d~~~~~~-~--~~~~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~l~~~ 157 (206)
|..+..+ + ....+.||+|+++..-.. .+.+..+.|+|||+|++-
T Consensus 116 d~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 116 ASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp CHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred cccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEe
Confidence 9433211 0 114567899999876543 235567789999988763
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=4.4e-12 Score=99.72 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=73.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++++|||+|||+|.++..+++.. . .+|+++|.++.+ ..+++....++. ..++.++.+| ....++ +.+++
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~G-a-~~V~avd~s~~~-~~a~~~~~~n~~----~~~v~~~~~~-~~~~~~--~~~~~ 101 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAG-A-RKVIGIECSSIS-DYAVKIVKANKL----DHVVTIIKGK-VEEVEL--PVEKV 101 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEECSTTH-HHHHHHHHHTTC----TTTEEEEESC-TTTCCC--SSSCE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhC-C-CEEEEEcCcHHH-hhhhhHHHHhCC----ccccceEecc-HHHccc--cccee
Confidence 478999999999999999888753 3 389999999854 555555554332 3579999999 344445 77889
Q ss_pred eEEEecCC---------hHHHHHHHHhcccCCcEEEE
Q psy10573 129 RVIQSCWT---------KEEYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 129 D~i~~~~~---------~~~~~~~~~~~L~~gG~l~~ 156 (206)
|+|++... ++.++..+.+.|+|||.++-
T Consensus 102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 99987544 34577888999999998863
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=3.2e-12 Score=103.09 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc----ccCCCc
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGR 107 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~ 107 (206)
..+.....+++.+. +.++.++||||||+|..+..++...+ ..+++|+|+++.+++.|+++....... ......
T Consensus 200 l~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~ 276 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276 (406)
T ss_dssp BCHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred CCHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 35667888888887 89999999999999999999998874 348999999999999999887641100 011122
Q ss_pred eEE-EEcccccccccCCCCCCeeEEEecCC-----hHHHHHHHHhcccCCcEEEEE
Q psy10573 108 VQF-VAYFWLRHLLLTNPHGSTRVIQSCWT-----KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 108 i~~-~~~d~~~~~~~~~~~~~~D~i~~~~~-----~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+.+ ..++......+...-..+|+|+++.. +.+.+.++.+.|||||+|+..
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ceeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 333 22331111111001123488887643 345778999999999999874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.1e-11 Score=89.89 Aligned_cols=119 Identities=17% Similarity=0.092 Sum_probs=86.9
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+...+... -.+.+|||++||+|.++..++.+.. .+|+.||.++.+++.+++++.. ....++.++
T Consensus 26 t~~~vre~lfn~l~~~-~~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~-----~~~~~~~ii 97 (183)
T d2fpoa1 26 TTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLAT-----LKAGNARVV 97 (183)
T ss_dssp -CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH-----TTCCSEEEE
T ss_pred CcHHHHHHHHhhhhcc-cchhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhh-----ccccceeee
Confidence 3334555565555432 3578999999999999998887653 2899999999999999999986 334578899
Q ss_pred EcccccccccCCCCCCeeEEEecCChH-----HHHHHHHh--cccCCcEEEEEecC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLLD--QLVPGGRMVMPVGE 160 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~--~L~~gG~l~~~~~~ 160 (206)
..|+...... ....||+|+++++.. .+++.+.+ .|+++|++++....
T Consensus 98 ~~d~~~~l~~--~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 98 NSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp CSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred eecccccccc--cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9994443333 566789999999853 34454443 58999999987543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.29 E-value=3.2e-11 Score=87.30 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=90.6
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
+.+...+.+.+...|.. ...+.+|||++||+|.++..++.+.. .+|+.+|.++.+++.+++++...+. ..+++
T Consensus 22 RPt~~~vrealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~----~~~~~ 94 (182)
T d2fhpa1 22 RPTTDKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKE----PEKFE 94 (182)
T ss_dssp CCCCHHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTC----GGGEE
T ss_pred CcCcHHHHHHHHHHHHH-hcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhc----ccccc
Confidence 33445566777777753 35689999999999999998887653 2899999999999999999976332 24799
Q ss_pred EEEcccccccc-cCCCCCCeeEEEecCChH-----HHHHHHHh--cccCCcEEEEEecCC
Q psy10573 110 FVAYFWLRHLL-LTNPHGSTRVIQSCWTKE-----EYNSWLLD--QLVPGGRMVMPVGEP 161 (206)
Q Consensus 110 ~~~~d~~~~~~-~~~~~~~~D~i~~~~~~~-----~~~~~~~~--~L~~gG~l~~~~~~~ 161 (206)
++.+|+..... +......||+|+++++.. ..++.+.+ .|+++|++++.+...
T Consensus 95 i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 95 VRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 99999433211 111345679999999863 35555543 689999998876544
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.27 E-value=1.8e-11 Score=89.40 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=67.8
Q ss_pred CccccCcHHHHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
..|..+.+.+.+.++..+... --.|.+|||+|||+|.++..++... . .+|+++|+++.+++.|++++.
T Consensus 24 leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g-a-~~V~~vDid~~a~~~ar~N~~--------- 92 (197)
T d1ne2a_ 24 LEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG-A-ESVTAFDIDPDAIETAKRNCG--------- 92 (197)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT-B-SEEEEEESCHHHHHHHHHHCT---------
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC-C-CcccccccCHHHHHHHHHccc---------
Confidence 345556677776665544321 1257899999999999988776643 2 389999999999999998863
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
++.++.+|..+ .+++||+|++|+++
T Consensus 93 -~~~~~~~D~~~------l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 93 -GVNFMVADVSE------ISGKYDTWIMNPPF 117 (197)
T ss_dssp -TSEEEECCGGG------CCCCEEEEEECCCC
T ss_pred -cccEEEEehhh------cCCcceEEEeCccc
Confidence 57889999432 24678999999886
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=6.1e-11 Score=90.02 Aligned_cols=113 Identities=14% Similarity=0.020 Sum_probs=78.5
Q ss_pred cccccccCccccCcHHHHHHHHHHhhc---cC----CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy10573 20 IKSRQIGYGADISSPHIHAQMLELLKD---KI----KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~----~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~ 92 (206)
.-.+..+.+..++.+........++.. .. .+..++||+|||+|..+..++... ++.+++|+|+++.+++.|+
T Consensus 24 gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~ 102 (250)
T d2h00a1 24 GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAK 102 (250)
T ss_dssp CCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHH
T ss_pred CceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHH
Confidence 334455566667766554333333221 11 234689999999999999998887 6789999999999999999
Q ss_pred HhhhccCccccCCCceEEEEcccccccc---cCCCCCCeeEEEecCCh
Q psy10573 93 KNIDKGNSELLDQGRVQFVAYFWLRHLL---LTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~D~i~~~~~~ 137 (206)
+++..++.+ .++.++..+...... ....+++||+|++|+++
T Consensus 103 ~N~~~n~l~----~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY 146 (250)
T d2h00a1 103 KNVEQNNLS----DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPF 146 (250)
T ss_dssp HHHHHTTCT----TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred HHHHHhCCC----cceeeeeeccHHhhhhhhhhcccCceeEEEecCcc
Confidence 999885432 568887766222110 11246689999999986
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=4.3e-11 Score=93.54 Aligned_cols=111 Identities=21% Similarity=0.149 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
....++||.+|.|.|..+..+++.. +..+++.+|+++.+++.|++.+...+......++++++.+|..+...- .+.+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~ 151 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEER 151 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCC
T ss_pred CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh--cCCc
Confidence 3566899999999999999988654 566999999999999999998854211113457899999995444333 4567
Q ss_pred eeEEEecCCh-------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK-------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~-------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+++..- ..+.+.+.+.|+|||++++.+.+.
T Consensus 152 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~ 198 (312)
T d1uira_ 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (312)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred ccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence 8999986521 236789999999999999876543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=1.5e-10 Score=85.05 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=69.4
Q ss_pred ccccCcHHHHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC
Q psy10573 28 GADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 106 (206)
+|..+.+.+...+....... --.|.+|||+|||+|.++..++... . .+|+++|+++.+++.+++++...+ .
T Consensus 23 ~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~-~~v~~vdi~~~~~~~a~~N~~~~~------~ 94 (201)
T d1wy7a1 23 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-A-KEVICVEVDKEAVDVLIENLGEFK------G 94 (201)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHTGGGT------T
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC-C-CEEEEEcCcHHHHHHHHHHHHHcC------C
Confidence 34445566666655433321 1357899999999999998877543 2 489999999999999999987633 3
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
+..++..|... .++.||+|++++++
T Consensus 95 ~~~~~~~d~~~------~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 95 KFKVFIGDVSE------FNSRVDIVIMNPPF 119 (201)
T ss_dssp SEEEEESCGGG------CCCCCSEEEECCCC
T ss_pred CceEEECchhh------hCCcCcEEEEcCcc
Confidence 57888888322 24567999999985
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=6.1e-11 Score=94.54 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+++.+.+. ..++.+|||+.||+|.++..+++... +|+|+|.++.+++.|++++.. ++..|+.++
T Consensus 194 ~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~-----n~i~n~~~~ 265 (358)
T d1uwva2 194 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARL-----NGLQNVTFY 265 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHH-----TTCCSEEEE
T ss_pred hhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHh-----cccccceee
Confidence 44455554444332 55788999999999999999987553 999999999999999999988 445689999
Q ss_pred Ecccccccc-cCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeE
Q psy10573 112 AYFWLRHLL-LTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGV 187 (206)
Q Consensus 112 ~~d~~~~~~-~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (206)
.++...... .......+|+|+.+++- +..++.+.+ ++|.-++++++...+ ..+.+......+|.. ..+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~T---laRDl~~l~~~gy~l-~~i~~~ 340 (358)
T d1uwva2 266 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPAT---LARDSEALLKAGYTI-ARLAML 340 (358)
T ss_dssp ECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHHH---HHHHHHHHHHTTCEE-EEEEEE
T ss_pred ecchhhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHHH---HHHHHHHHHHCCCeE-eEEEEE
Confidence 988333221 11135667999999874 344454444 367777777765443 122222222345777 777777
Q ss_pred Eeeeccc
Q psy10573 188 RTNPLYR 194 (206)
Q Consensus 188 ~~~~~~~ 194 (206)
.+.|.+.
T Consensus 341 D~FP~T~ 347 (358)
T d1uwva2 341 DMFPHTG 347 (358)
T ss_dssp CCSTTSS
T ss_pred ecCCCCc
Confidence 7776654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=2.1e-10 Score=88.66 Aligned_cols=110 Identities=19% Similarity=0.116 Sum_probs=84.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
....+||-||.|.|..+..+++.. +..+++.+|+++.+++.+++.+..... ....++++++.+|......- .+++|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~--~~~~y 163 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRK--FKNEF 163 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGG--CSSCE
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcc-cccCCCcEEEhhhHHHHHhc--CCCCC
Confidence 556899999999999999998754 455899999999999999998865211 12357899999995444333 45678
Q ss_pred eEEEecCCh-----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++..- ..+.+.+.+.|+|||++++.+.++.
T Consensus 164 DvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 164 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred CEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 999987542 2366899999999999999877653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.10 E-value=3.2e-10 Score=86.97 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=86.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.....+||-+|.|.|..+..+.+.. +..+++.+|+++.+++.|++.+..... ....++++++.+|......- .+.+
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~-~~~d~r~~i~~~D~~~~l~~--~~~~ 148 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDDPRVDVQVDDGFMHIAK--SENQ 148 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTSTTEEEEESCSHHHHHT--CCSC
T ss_pred cCCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcc-cccCCCeEEEechHHHHHhh--cCCC
Confidence 3566899999999999999998754 445999999999999999998864211 13457899999994443333 4667
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++..- ..+.+.+.+.|+|+|+++..+.++.
T Consensus 149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~ 193 (274)
T d1iy9a_ 149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW 193 (274)
T ss_dssp EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence 8999987542 3467899999999999998876643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.08 E-value=3.9e-10 Score=87.60 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=85.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.....+||-+|.|.|..+..+++.. +..+++.+|+++.+++.+++.+..... ....++++++.+|......- ...+
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~-~~~dprv~i~i~Da~~~l~~--~~~~ 179 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKN--HKNE 179 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHH--CTTC
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhcc-ccCCCCeEEEEchHHHHHHh--CCCC
Confidence 3566899999999999999998754 445999999999999999998865321 13457999999994443333 4667
Q ss_pred eeEEEecCChH----------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE----------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~----------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++..-+ .+.+.+.+.|+|||+++....+..
T Consensus 180 yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 180 FDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp EEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred CCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 89999976532 256889999999999999876654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=5.1e-10 Score=86.21 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=85.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
....++||-+|.|.|..+..+.+.. +..+++.+|+++.+++.|++.+..... ....++++++.+|......- .+++
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~l~~--~~~~ 151 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQ--NQDA 151 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHT--CSSC
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHHHhc--CCCC
Confidence 3556899999999999999998754 445999999999999999998864211 13357999999994443332 4567
Q ss_pred eeEEEecCChH----------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE----------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~----------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++..-+ .+.+.+.+.|+|||++++.+.+..
T Consensus 152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 196 (285)
T d2o07a1 152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 196 (285)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence 89999975431 256889999999999999877654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.06 E-value=1.2e-09 Score=78.87 Aligned_cols=121 Identities=16% Similarity=0.048 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.+.+...+... -.+.+|||+.||||.++..++.+.. .+++.||.+..+++.++++++..+.+ .....++..|
T Consensus 29 ~vrealFn~l~~~-~~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~---~~~~~~~~~d 102 (183)
T d2ifta1 29 RVKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQS 102 (183)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSC
T ss_pred HHHHHHHHHhhhh-cccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhccc---cccccccccc
Confidence 3455555555422 3578999999999999999997753 29999999999999999999873321 2346667776
Q ss_pred cccccccCCCCCCeeEEEecCChH-----HHHHHHH--hcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLL--DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~--~~L~~gG~l~~~~~~~ 161 (206)
.............||+|+++++.. .+++.+. ..|+++|++++.....
T Consensus 103 ~~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 103 SLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp HHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred ccccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 333222212355789999999963 3445553 4689999999876653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.05 E-value=9e-10 Score=86.63 Aligned_cols=124 Identities=16% Similarity=0.099 Sum_probs=88.4
Q ss_pred ccccCcHHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhccCcc
Q psy10573 28 GADISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVMELAESSIKNIDKGNSE 101 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~ 101 (206)
++.++...+...|.+.+... ..++.+|+|.|||+|.++..+..... ...+++|+|+++.++..|+.++....
T Consensus 93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-- 170 (328)
T d2f8la1 93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-- 170 (328)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--
T ss_pred CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--
Confidence 45555555665565554322 35667899999999999988876542 34478999999999999988876522
Q ss_pred ccCCCceEEEEcccccccccCCCCCCeeEEEecCChH------------------------HHHHHHHhcccCCcEEEEE
Q psy10573 102 LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE------------------------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 102 ~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~------------------------~~~~~~~~~L~~gG~l~~~ 157 (206)
....+..+|... . .+...||+|++++++. .+++.+.+.|++||++++.
T Consensus 171 ----~~~~~~~~d~~~--~--~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 171 ----QKMTLLHQDGLA--N--LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp ----CCCEEEESCTTS--C--CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ----hhhhhhcccccc--c--cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 345566666221 1 2566789999999851 1468889999999999888
Q ss_pred ecCC
Q psy10573 158 VGEP 161 (206)
Q Consensus 158 ~~~~ 161 (206)
++..
T Consensus 243 ~p~~ 246 (328)
T d2f8la1 243 VPDA 246 (328)
T ss_dssp EEGG
T ss_pred ecCc
Confidence 7753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.03 E-value=1.3e-09 Score=84.21 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=85.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
....+||-+|.|.|..+..+.+.. +..+++.+|+++.+++.+++.+.... .....++++++.+|...... ..++++|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~~r~~i~~~Da~~~l~-~~~~~~y 155 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVA-IGYEDPRVNLVIGDGVAFLK-NAAEGSY 155 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHH-GGGGSTTEEEEESCHHHHHH-TSCTTCE
T ss_pred CCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhh-ccccCCCcEEEEccHHHHHh-hccccCc
Confidence 556899999999999999998754 44589999999999999999885421 11345789999999433322 1145688
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++..- ..+.+.+.+.|+|||++++.+.+..
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 999986542 2367899999999999999887654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=2.7e-09 Score=83.33 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+|.+|||++||.|+=+..++......+.+++.|+++..+...++++.+ .+..++.+...|... .+. .++.
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r-----~~~~~i~~~~~d~~~-~~~--~~~~ 185 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR-----LGVLNVILFHSSSLH-IGE--LNVE 185 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-----HTCCSEEEESSCGGG-GGG--GCCC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH-----HHhhccccccccccc-ccc--cccc
Confidence 78999999999999999999988877778999999999999999999887 344677777777322 222 4667
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
||.|++++++ ..++..+.+.|+|||+++.++.+...
T Consensus 186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 8999998885 12567889999999999999998663
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.01 E-value=1e-09 Score=81.21 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+.+.+...|++.+. ..++.+|||.|||+|.++..+.+.......++|+|+++..+..+ ....++
T Consensus 3 TP~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------~~~~~~ 66 (223)
T d2ih2a1 3 TPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGI 66 (223)
T ss_dssp CCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEE
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------------ccceee
Confidence 44567777888776 67889999999999999998887775666899999998654332 234566
Q ss_pred EcccccccccCCCCCCeeEEEecCCh-----------------------------------HHHHHHHHhcccCCcEEEE
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTK-----------------------------------EEYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~-----------------------------------~~~~~~~~~~L~~gG~l~~ 156 (206)
.+|.... .....||+++.++++ ..++....+.|++||++.+
T Consensus 67 ~~~~~~~----~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~ 142 (223)
T d2ih2a1 67 LADFLLW----EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 142 (223)
T ss_dssp ESCGGGC----CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeehhcc----ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence 6663221 134677999998773 1234677889999999988
Q ss_pred EecCC
Q psy10573 157 PVGEP 161 (206)
Q Consensus 157 ~~~~~ 161 (206)
.+++.
T Consensus 143 I~p~~ 147 (223)
T d2ih2a1 143 VVPAT 147 (223)
T ss_dssp EEEGG
T ss_pred EEeee
Confidence 88753
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2.6e-09 Score=82.28 Aligned_cols=107 Identities=17% Similarity=0.080 Sum_probs=84.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+++|.|+=+..++... .++.++++|+++..+...++++.+.+ ..++.....|....... ..+.
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g-----~~~~~~~~~~~~~~~~~--~~~~ 171 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWC--GEQQ 171 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHH--TTCC
T ss_pred ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhccc-----ccceeeeccccccchhc--cccc
Confidence 7889999999999999999998765 55799999999999999999998833 34555555442222222 4567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++ ..+++.+.+.|+|||.++.++.+..
T Consensus 172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 8999999885 1256788889999999999999865
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=2.7e-09 Score=76.81 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.+...+++.|. +.++..++|.++|.|+.+..+++. +++|+++|.++++++.+++.. .+++.+++.
T Consensus 4 pVll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~ 69 (182)
T d1wg8a2 4 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLH---------LPGLTVVQG 69 (182)
T ss_dssp CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTC---------CTTEEEEES
T ss_pred chHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhcc---------ccceeEeeh
Confidence 456788888887 889999999999999999999874 459999999999999998653 257899988
Q ss_pred cccccccc--CCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 114 FWLRHLLL--TNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 114 d~~~~~~~--~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++.+.... .+..+.+|.|+.+.++ ...++.....|++||++++.+++..
T Consensus 70 ~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~ 135 (182)
T d1wg8a2 70 NFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL 135 (182)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred HHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence 83332111 1245778999998764 1245777889999999999888643
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1e-08 Score=79.21 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||++||+|+-+..++...+..+.++++|+++..++..++++.+ .+..++.+...|.....+..-..+.
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r-----~g~~~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR-----AGVSCCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCGGGSCTTCGGGTT
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh-----cCccceeeeehhhhhhcccccccce
Confidence 68899999999999999999988877778999999999999999999988 4456888888883322221002356
Q ss_pred eeEEEecCChH------------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE------------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~------------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++. .++..+. .+++||+++-++.+..
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 89999987741 0223333 4789999999988755
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.92 E-value=4.9e-09 Score=80.37 Aligned_cols=110 Identities=20% Similarity=0.133 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc-----cccCCCceEEEEcccccccccC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-----ELLDQGRVQFVAYFWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~i~~~~~d~~~~~~~~ 122 (206)
.....+||.+|+|.|..+..+.+. +..+++.+|+++.+++.|++.+..... .....++++++.+|......
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~-- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--
T ss_pred CCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh--
Confidence 466789999999999999988764 334899999999999999988754211 00235789999999433222
Q ss_pred CCCCCeeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 123 NPHGSTRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+++||+|+++..- ..+.+.+.+.|+|+|++++.+.++.
T Consensus 146 -~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 146 -NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp -HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred -ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 24568999986542 2467899999999999998776543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.92 E-value=7.6e-09 Score=77.41 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.+...+++.+. +.++.+|||||||+|.++..+++... +++++|+++.+++.+++++.. .++++++
T Consensus 5 ~d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~-------~~n~~i~ 72 (235)
T d1qama_ 5 TSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD-------HDNFQVL 72 (235)
T ss_dssp CCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT-------CCSEEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhc-------ccchhhh
Confidence 44567777777775 78999999999999999999998643 899999999999999988754 3689999
Q ss_pred EcccccccccCCCCCCeeEEEecCChH
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
.+|+.+. .+ +......|+.|.+..
T Consensus 73 ~~D~l~~-~~--~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 73 NKDILQF-KF--PKNQSYKIFGNIPYN 96 (235)
T ss_dssp CCCGGGC-CC--CSSCCCEEEEECCGG
T ss_pred hhhhhhc-cc--cccccceeeeeehhh
Confidence 9994332 22 444435677777753
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=5.8e-09 Score=86.93 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=91.5
Q ss_pred cCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC-----------------CceEEEEeCCHHHH
Q psy10573 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----------------EGRVYGVEHVMELA 88 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-----------------~~~v~~iD~s~~~~ 88 (206)
..|++++...+...|++.+. ..++.+|+|-+||+|.+...+.+.... ...++|+|+++...
T Consensus 142 ~~GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~ 219 (524)
T d2ar0a1 142 GAGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 219 (524)
T ss_dssp ---CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred ccchhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence 34888899999999999987 677889999999999999887665321 12589999999999
Q ss_pred HHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------------------HHHHHHHhcc
Q psy10573 89 ESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------------------EYNSWLLDQL 148 (206)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------------------~~~~~~~~~L 148 (206)
..|+-++...+.+........+...+....... ....||+|++|+++- .+++.+.+.|
T Consensus 220 ~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 297 (524)
T d2ar0a1 220 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 297 (524)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred HHHHHHHHhhcccccccccchhhhhhhhhhccc--ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc
Confidence 999988765332111011122333332111112 345689999999861 2668899999
Q ss_pred cCCcEEEEEecC
Q psy10573 149 VPGGRMVMPVGE 160 (206)
Q Consensus 149 ~~gG~l~~~~~~ 160 (206)
++||++.+.++.
T Consensus 298 k~gGr~aiIlP~ 309 (524)
T d2ar0a1 298 HPGGRAAVVVPD 309 (524)
T ss_dssp EEEEEEEEEEEH
T ss_pred cccCcEEEEEeh
Confidence 999999888874
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.89 E-value=1e-08 Score=83.35 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=96.3
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC------------CceEEEEeCCHHHHHHHH
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP------------EGRVYGVEHVMELAESSI 92 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~------------~~~v~~iD~s~~~~~~a~ 92 (206)
...|+.++...+...|++.+. ..++.+|+|.+||+|.+...+.+.... ...++|+|+++.....|+
T Consensus 139 k~~G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~ 216 (425)
T d2okca1 139 SGAGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS 216 (425)
T ss_dssp TCCGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred ccchhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHH
Confidence 345888899999999999887 677899999999999999888765421 125899999999999999
Q ss_pred HhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-----------------------HHHHHHHHhccc
Q psy10573 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-----------------------EEYNSWLLDQLV 149 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-----------------------~~~~~~~~~~L~ 149 (206)
-++...+. ......+...|... .. +...||+|++++++ ..++..+.+.|+
T Consensus 217 ~n~~l~g~---~~~~~~i~~~d~l~--~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk 289 (425)
T d2okca1 217 MNLYLHGI---GTDRSPIVCEDSLE--KE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK 289 (425)
T ss_dssp HHHHHTTC---CSSCCSEEECCTTT--SC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE
T ss_pred hhhhhcCC---ccccceeecCchhh--hh--cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC
Confidence 88765331 12344556666321 12 45678999999996 126688999999
Q ss_pred CCcEEEEEecC
Q psy10573 150 PGGRMVMPVGE 160 (206)
Q Consensus 150 ~gG~l~~~~~~ 160 (206)
+||++.+.+++
T Consensus 290 ~~G~~~iI~p~ 300 (425)
T d2okca1 290 TGGRAAVVLPD 300 (425)
T ss_dssp EEEEEEEEEEH
T ss_pred CCCeEEEEech
Confidence 99999888874
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.84 E-value=7.4e-10 Score=83.51 Aligned_cols=96 Identities=23% Similarity=0.328 Sum_probs=76.0
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.||++ ..+.+.+.+++.+. +.++..|||||||+|.++..+++... ++++||+++.+++.+++++.. .
T Consensus 7 ~GQnFL~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~-------~ 74 (245)
T d1yuba_ 7 YSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKL-------N 74 (245)
T ss_dssp SCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTT-------C
T ss_pred CCCcccCCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhh-------c
Confidence 45555 55778889998887 78899999999999999999998643 999999999998888776643 3
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
++++++.+|+.+ ..+ +....+.|+.+.+.
T Consensus 75 ~n~~ii~~D~l~-~~~--~~~~~~~vv~NLPY 103 (245)
T d1yuba_ 75 TRVTLIHQDILQ-FQF--PNKQRYKIVGNIPY 103 (245)
T ss_dssp SEEEECCSCCTT-TTC--CCSSEEEEEEECCS
T ss_pred cchhhhhhhhhc-ccc--ccceeeeEeeeeeh
Confidence 689999999432 233 66777888888775
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.84 E-value=4.1e-08 Score=71.23 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=70.4
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHH----HHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhccCc-c-------
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLT----ACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNS-E------- 101 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~----~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~-~------- 101 (206)
...+.+.+.. -.+..+|+++|||+|.-. +.+..... ...+++++|+++.+++.|++..-.... .
T Consensus 12 f~~L~~~~~~-~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~ 90 (193)
T d1af7a2 12 FPILAEHARR-RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL 90 (193)
T ss_dssp HHHHHHHHHH-SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred HHHHHHHHhc-cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHH
Confidence 3344444432 244569999999999743 33333321 234799999999999999754321000 0
Q ss_pred ------ccC------------CCceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEE
Q psy10573 102 ------LLD------------QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 102 ------~~~------------~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~ 155 (206)
..+ ...+.+...+.....+. +.+.||+|+|...+. .+++.+.+.|+|||.|+
T Consensus 91 ~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~ 168 (193)
T d1af7a2 91 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN--VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF 168 (193)
T ss_dssp HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC--CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred hhceeecCCCccceeehHHHHHHHHHHhhhhccccccC--CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEE
Confidence 000 01122333331111222 457899999988863 47899999999999877
Q ss_pred EE
Q psy10573 156 MP 157 (206)
Q Consensus 156 ~~ 157 (206)
+-
T Consensus 169 lG 170 (193)
T d1af7a2 169 AG 170 (193)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.81 E-value=1.2e-08 Score=76.82 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
....+|||+|||+|.++..+++.. |+.+++..|..+ .++.+ ....+++++.+|+.+. . | ..
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~-----------~~~~ri~~~~gd~~~~--~--p--~~ 140 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLPQ-VIENA-----------PPLSGIEHVGGDMFAS--V--P--QG 140 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HHTTC-----------CCCTTEEEEECCTTTC--C--C--CE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecchh-hhhcc-----------CCCCCeEEecCCcccc--c--c--cc
Confidence 445799999999999999999988 888999999743 32211 1236899999995332 2 3 23
Q ss_pred eEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
|++++...++. ++++++++|+|||++++.-.
T Consensus 141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99998877754 77999999999999988753
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.75 E-value=2.3e-08 Score=74.49 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
.|.....+.+.+.+ ..+.+|||+|++.|+.+..++.. .++.++++++|+++....... ....+++
T Consensus 65 ~p~d~~~~~eli~~--~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----------~~~~~I~ 132 (232)
T d2bm8a1 65 DPDTQAVYHDMLWE--LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----------SDMENIT 132 (232)
T ss_dssp CHHHHHHHHHHHHH--HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----------GGCTTEE
T ss_pred CHHHHHHHHHHHHH--hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----------cccccee
Confidence 36666555555542 23679999999999888776643 356789999999774332211 1236899
Q ss_pred EEEccccccccc-CCCCCCeeEEEecCC--hHHHH-H-HHHhcccCCcEEEEE
Q psy10573 110 FVAYFWLRHLLL-TNPHGSTRVIQSCWT--KEEYN-S-WLLDQLVPGGRMVMP 157 (206)
Q Consensus 110 ~~~~d~~~~~~~-~~~~~~~D~i~~~~~--~~~~~-~-~~~~~L~~gG~l~~~ 157 (206)
++.+|..+...+ .+....+|.|+.+.. ..+.. + .+...|++||++++.
T Consensus 133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 133 LHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE 185 (232)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred eeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEE
Confidence 999983222111 124556788888755 11211 1 345789999998875
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=8.3e-08 Score=70.16 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=80.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+++|+|||.|.-+..++-.. |..+++.+|.+..-+...++.... .+..+++++.....+ . . ++.+||
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~-~-~--~~~~fD 134 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE-----LKLENIEPVQSRVEE-F-P--SEPPFD 134 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH-----TTCSSEEEEECCTTT-S-C--CCSCEE
T ss_pred cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHH-----cCCcceeeeccchhh-h-c--cccccc
Confidence 46799999999999999988655 888999999999988888877776 344689999877332 1 1 345789
Q ss_pred EEEecCC--hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 130 VIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|++-+. +..+++.+...++++|.+++.-...
T Consensus 135 ~V~sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~~ 168 (207)
T d1jsxa_ 135 GVISRAFASLNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp EEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred eehhhhhcCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 9998655 4668888999999999998876543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=7.5e-08 Score=68.97 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=75.0
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-----cc
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-----LL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 121 (206)
.++++.+|||+||++|.++..+.+..+..+.++++|+.+. ...+++.++.+|..... ..
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------------~~i~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------------DPIVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------------CCCTTEEEEESCTTSHHHHHHHHH
T ss_pred ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------------cccCCceEeecccccchhhhhhhh
Confidence 3689999999999999999999988877789999997651 12357888998832111 00
Q ss_pred CCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
....+.+|+|+++.+. ...+.-+.+.|++||.+++-++.+.
T Consensus 83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~ 140 (180)
T d1ej0a_ 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence 1246678999998773 1234667889999999999988765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.63 E-value=8.4e-08 Score=72.06 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=67.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
....+|+|+|||+|.++..+++.. |+.++++.|..+ +++.+ ....+++++.+|+.+. . + .+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~-----------~~~~rv~~~~gD~f~~--~--p--~a 139 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ-VVENL-----------SGSNNLTYVGGDMFTS--I--P--NA 139 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HHTTC-----------CCBTTEEEEECCTTTC--C--C--CC
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCHH-HHHhC-----------cccCceEEEecCcccC--C--C--CC
Confidence 344789999999999999999988 788999999743 33222 1236899999994332 1 2 34
Q ss_pred eEEEecCChHH--------HHHHHHhcccCC---cEEEEE
Q psy10573 129 RVIQSCWTKEE--------YNSWLLDQLVPG---GRMVMP 157 (206)
Q Consensus 129 D~i~~~~~~~~--------~~~~~~~~L~~g---G~l~~~ 157 (206)
|++++...+|. +++++++.|+|| |++++.
T Consensus 140 D~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 140 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred cEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 99998877753 779999999998 666665
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.3e-06 Score=66.43 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..+.+...+++.+. +.++..|||||+|.|.++..+++... +++++|+++.+++..++.+.... ...+++++
T Consensus 5 ~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i 75 (278)
T d1zq9a1 5 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTP----VASKLQVL 75 (278)
T ss_dssp CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTST----TGGGEEEE
T ss_pred CCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhc----cccchhhh
Confidence 56778888888886 78899999999999999999998652 99999999999999999886521 12589999
Q ss_pred EcccccccccCCCCCCeeEEEecCChH
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
.+|+... .+ + .++.|+.|.+..
T Consensus 76 ~~D~l~~-~~--~--~~~~vV~NLPY~ 97 (278)
T d1zq9a1 76 VGDVLKT-DL--P--FFDTCVANLPYQ 97 (278)
T ss_dssp ESCTTTS-CC--C--CCSEEEEECCGG
T ss_pred HHHHhhh-hh--h--hhhhhhcchHHH
Confidence 9994321 11 2 236788887764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.53 E-value=5.6e-07 Score=66.96 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=79.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.+.+++|+|+|.|.-+..++-.. |..+++.+|.+..-+...+..... .+..++.++.....+.....-..+.||
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~-----L~L~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEA-----LQLENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHH-----hCCCCcEEEeehhhhccccccccccce
Confidence 56799999999999999887655 778999999999877777766665 334688888876322211111246789
Q ss_pred EEEecCC--hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 130 VIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|++-+. +..+++.+...++++|.+++.-...
T Consensus 144 ~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~ 177 (239)
T d1xdza_ 144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAAS 177 (239)
T ss_dssp EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred EEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence 9998654 5678899999999999998876553
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.4e-07 Score=71.05 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
+..+.+...+++.+. +.++..|||||||+|.++..+++.. .+++++|+++.+++..++.+.. .+++++
T Consensus 4 L~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~-------~~~~~i 71 (252)
T d1qyra_ 4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFL-------GPKLTI 71 (252)
T ss_dssp ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTT-------GGGEEE
T ss_pred cCCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhh-------ccchhH
Confidence 356778888988886 7889999999999999999999754 3899999999999999876543 358999
Q ss_pred EEccc
Q psy10573 111 VAYFW 115 (206)
Q Consensus 111 ~~~d~ 115 (206)
+.+|.
T Consensus 72 i~~D~ 76 (252)
T d1qyra_ 72 YQQDA 76 (252)
T ss_dssp ECSCG
T ss_pred Hhhhh
Confidence 99994
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.46 E-value=2.9e-07 Score=69.00 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=66.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+..+|+|+|||+|.++..+++.. |+.++++.|..+. ++.+ ....++.++.+|+.+. . |.+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~-----------~~~~r~~~~~~d~~~~--~--P~a-- 140 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA-----------PSYPGVEHVGGDMFVS--I--PKA-- 140 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC-----------CCCTTEEEEECCTTTC--C--CCC--
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc-----------ccCCceEEeccccccc--C--CCc--
Confidence 335789999999999999999988 8889999998653 2111 1236899999995432 2 433
Q ss_pred eEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 129 RVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 129 D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
|+++....++ .++++++++|+|||++++.-
T Consensus 141 d~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 141 DAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp SCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred ceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 5555544432 47899999999999988863
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=1.4e-06 Score=69.18 Aligned_cols=107 Identities=13% Similarity=-0.054 Sum_probs=77.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc----------cCCCceEEEEccccccc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL----------LDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~----------~~~~~i~~~~~d~~~~~ 119 (206)
.+.+|||..||+|..++..+...+ ..+|+..|+|+.+++.+++++..++... .....+.+...|.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 578999999999999998777664 4489999999999999999998744221 11223556666622211
Q ss_pred ccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.- ....||+|.+++- ...+++.+.+.++.||.+.++.-
T Consensus 124 ~~--~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AE--RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HH--STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Hh--hcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence 11 3456799988753 23477888999999999888754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.11 E-value=1.4e-05 Score=56.42 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~~ 122 (206)
++++.+|+-+|||. |..+..+++..+.. .++++|.++..++.+++.-.. +++..+ +.+. ...
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~-~v~~~~~~~~k~~~a~~~Ga~-----------~~i~~~~~~~~~~i~~~- 92 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGAS-IIIAVDIVESRLELAKQLGAT-----------HVINSKTQDPVAAIKEI- 92 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH-
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccc-eeeeeccHHHHHHHHHHcCCe-----------EEEeCCCcCHHHHHHHH-
Confidence 78999999999986 66777777777543 788899999999999864221 223222 1111 112
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.++.+|+|+....-...++.+.+.++++|++++.-
T Consensus 93 -t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 93 -TDGGVNFALESTGSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp -TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECC
T ss_pred -cCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEe
Confidence 45678999998888888899999999999998764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=8e-06 Score=63.42 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=62.8
Q ss_pred cCcccc-CcHHHHHHHHHHhhc--cC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc
Q psy10573 26 GYGADI-SSPHIHAQMLELLKD--KI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~--~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~ 100 (206)
.+||++ ..+.+...+++.+.- .. ..+..|||+|+|.|.++..+.+...+. +++++|+++...+..++.+..
T Consensus 14 ~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~-~v~~iE~D~~~~~~L~~~~~~--- 89 (322)
T d1i4wa_ 14 FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEG--- 89 (322)
T ss_dssp GGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCS-EEEEECCCHHHHHHHHHHTTT---
T ss_pred hccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCC-EEEEEECCHHHHHHHHHhccC---
Confidence 355555 678899999988741 11 246789999999999999998775443 899999999999999887643
Q ss_pred cccCCCceEEEEcc
Q psy10573 101 ELLDQGRVQFVAYF 114 (206)
Q Consensus 101 ~~~~~~~i~~~~~d 114 (206)
.++.++.+|
T Consensus 90 -----~~~~ii~~D 98 (322)
T d1i4wa_ 90 -----SPLQILKRD 98 (322)
T ss_dssp -----SSCEEECSC
T ss_pred -----CCcEEEeCc
Confidence 578888888
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.07 E-value=3.8e-06 Score=62.65 Aligned_cols=82 Identities=20% Similarity=0.077 Sum_probs=59.6
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc----CCCceEEEEcccccccccCCCCCC
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----DQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.+|||+.||.|..+..++... ++|+++|.++.+....+..+.+...... ...+++++.+|..+...- ..+.
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~--~~~~ 164 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITPR 164 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT--CSSC
T ss_pred CEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc--cCCC
Confidence 489999999999999998754 4999999999887777766654211000 123789999994443332 3456
Q ss_pred eeEEEecCChH
Q psy10573 128 TRVIQSCWTKE 138 (206)
Q Consensus 128 ~D~i~~~~~~~ 138 (206)
||+|+.+++++
T Consensus 165 ~DvIYlDPMFp 175 (250)
T d2oyra1 165 PQVVYLDPMFP 175 (250)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCc
Confidence 79999999874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.00 E-value=5.1e-05 Score=52.95 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-------cccc-
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-------WLRH- 118 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-------~~~~- 118 (206)
++++.+|+-+|||. |..+..+++..+ ++++++|.++..++.+++.-.. ..+...+ ..+.
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga~----------~~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGAD----------VTLVVDPAKEEESSIIERI 91 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCS----------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCCc----------EEEeccccccccchhhhhh
Confidence 78999999999995 788888887754 5999999999999999875432 1121111 0000
Q ss_pred cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
... ..+.+|+|+....-+..++.+.+.++++|++++.....
T Consensus 92 ~~~--~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 92 RSA--IGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp HHH--SSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred hcc--cccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence 001 23456999998888888899999999999998775443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.98 E-value=7.2e-06 Score=58.00 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=73.1
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~ 121 (206)
.++++.+|+-+|||. |..+..+++..+.. +|+++|.++..++.+++.=.. +++... +.+. ...
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~-~Vi~~d~~~~r~~~a~~lGa~-----------~~i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAG-RIIGVGSRPICVEAAKFYGAT-----------DILNYKNGHIEDQVMKL 91 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCS-CEEEECCCHHHHHHHHHHTCS-----------EEECGGGSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhccccc-ccccccchhhhHHHHHhhCcc-----------ccccccchhHHHHHHHH
Confidence 378999999999996 88888888876532 799999999999999764221 222211 1111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.....+|+|+....-...++...+.++|+|++++.-....
T Consensus 92 -t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~ 131 (174)
T d1jqba2 92 -TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGS 131 (174)
T ss_dssp -TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCS
T ss_pred -hhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 1334579999988877888899999999999988754443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=4.3e-05 Score=54.08 Aligned_cols=100 Identities=12% Similarity=-0.020 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--ccc----cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLR----HL 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~----~~ 119 (206)
+++|.+||-+|+|. |..+..+++..+.. +|+++|.++..++.+++.-.. .++.. + ..+ ..
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~-~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAE-NVIVIAGSPNRLKLAEEIGAD-----------LTLNRRETSVEERRKAIM 93 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBS-EEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccchhheecccccccc-cccccccccccccccccccce-----------EEEeccccchHHHHHHHH
Confidence 67899999999985 88888888876532 899999999999999764221 12211 1 100 01
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.. .....+|+|+....-...++...+.+++||++++.-..
T Consensus 94 ~~-~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 94 DI-THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp HH-TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred Hh-hCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence 11 12345799998877777788899999999999776443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00018 Score=50.17 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cccccc-ccc-CC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFWLRH-LLL-TN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~~~-~~ 123 (206)
++++.+|+-+|+|. |..+..+++..+. .+|+++|.++..++.+++.-.. .+.... .+..+. ... ..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~Ga~---------~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIGAD---------LVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTCS---------EEEECSSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhCCc---------cccccccccccccccccccc
Confidence 78999999999996 6777777776643 3899999999999999864322 111111 110000 000 00
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
....+|+|+....-+..++...+.+++||++++.....
T Consensus 94 ~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 94 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp HTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred CCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence 13356999998888888899999999999998875544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.82 E-value=0.0001 Score=54.36 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+.+..+|+|+|||.|+++..++... +...+.++++--+... ... ..+...-.-+++...+ .-+.++++
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-----~P~-~~~~~~~ni~~~~~~~----dv~~l~~~ 131 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-----EPI-PMSTYGWNLVRLQSGV----DVFFIPPE 131 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-----CCC-CCCSTTGGGEEEECSC----CTTTSCCC
T ss_pred CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-----CCc-cccccccccccchhhh----hHHhcCCC
Confidence 36888899999999999999998654 4447777776322100 000 0000011123333333 11234677
Q ss_pred CeeEEEecCCh-------H-----HHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 127 STRVIQSCWTK-------E-----EYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 127 ~~D~i~~~~~~-------~-----~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
..|+|+|+.+. + .+++-+.+.|+|||.|++-+..+..
T Consensus 132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~ 180 (257)
T d2p41a1 132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM 180 (257)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence 78999998642 1 2556777899999999998887653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.76 E-value=8.4e-05 Score=52.01 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~ 123 (206)
++|+..||-+|+|. |..+..+++..+. ..++++|.++..++.+++.... .++..+ ....... .
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~ga~-----------~~i~~~~~~~~~~~~~-~ 96 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLGAD-----------HVVDARRDPVKQVMEL-T 96 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTTCS-----------EEEETTSCHHHHHHHH-T
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcccc-----------eeecCcccHHHHHHHh-h
Confidence 68899999999986 6666777776643 3889999999999998875432 222221 1111111 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
....+|+|+....-...++...+.++++|++++.-.
T Consensus 97 ~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 97 RGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp TTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCC
T ss_pred CCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeC
Confidence 344579999998888888999999999999987643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.76 E-value=3e-05 Score=54.66 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---c-cccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---F-WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d-~~~~~~~~ 122 (206)
++++.+|+-+|||. |..+..+++..+. ..|+.+|.++..++.+++.-.. .++.. | ......-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~-----------~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGAT-----------DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCC-----------cccCCccchhhhhhhHhh
Confidence 78999999999997 8888888887753 3899999999999999874322 12211 1 00000000
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEecC
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVGE 160 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~~ 160 (206)
...+.+|+++....-+..++...+.++++ |.+++.-..
T Consensus 94 ~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 94 LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp HHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred hhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCC
Confidence 13456799999988888899999999996 999876443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.72 E-value=3.5e-05 Score=53.63 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~ 123 (206)
++++.+|+-+|+|. |..+..+++..+ .+++++|.++..++.+++.-.. .++... ..+.... .
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga~-----------~~i~~~~~~~~~~~~~-~ 90 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGAS-----------LTVNARQEDPVEAIQR-D 90 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHH-H
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCcc-----------ccccccchhHHHHHHH-h
Confidence 78999999999996 778888888765 5999999999999998764322 222211 1111000 0
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+ +|.++....-...++...+.|+++|++++.-
T Consensus 91 ~~g-~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 91 IGG-AHGVLVTAVSNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp HSS-EEEEEECCSCHHHHHHHHTTEEEEEEEEECC
T ss_pred hcC-CcccccccccchHHHHHHHHhcCCcEEEEEE
Confidence 122 3444444554566788899999999998764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.0002 Score=49.81 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=68.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
++++.+|+-+|+|. |.++..+++..+ ++++++|.++...+.+++.-.. .++.........- ...
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~lGad-----------~~i~~~~~~~~~~--~~~ 92 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGAD-----------EVVNSRNADEMAA--HLK 92 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCS-----------EEEETTCHHHHHT--TTT
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhccCCc-----------EEEECchhhHHHH--hcC
Confidence 78999999999985 888888888764 5788899999888888764322 2222220111111 234
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++....-...++...+.++++|++++...
T Consensus 93 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 93 SFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CEEEEEECCSSCCCHHHHHTTEEEEEEEEECCC
T ss_pred CCceeeeeeecchhHHHHHHHHhcCCEEEEecc
Confidence 679999877766667888899999999987643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.52 E-value=0.00012 Score=51.04 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=66.1
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNP 124 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 124 (206)
.++++.+|+-+|+|. |..+..+++..+ ++++++|.+++.++.+++.-.. .++.. +-.+...- .
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~lGa~-----------~~i~~~~~~~~~~~--~ 88 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGAD-----------HYIATLEEGDWGEK--Y 88 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCS-----------EEEEGGGTSCHHHH--S
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhccCCc-----------EEeeccchHHHHHh--h
Confidence 378999999999994 788888887765 5999999999999998764221 22221 10111111 2
Q ss_pred CCCeeEEEecCCh--HHHHHHHHhcccCCcEEEEEecC
Q psy10573 125 HGSTRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 125 ~~~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+.+|+++....- ...++...+.++++|++++.-..
T Consensus 89 ~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 89 FDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp CSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred hcccceEEEEecCCccchHHHHHHHhhccceEEEeccc
Confidence 3467988775332 22346678999999999887443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.45 E-value=0.00023 Score=49.90 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---c-cccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---F-WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d-~~~~~~~~ 122 (206)
++++.+|+-+|||. |..+..+++..+. .+|+++|.++..++.+++.-.. .++.. | ........
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~-----------~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGAT-----------ECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCc-----------EEEcCCCchhHHHHHHHH
Confidence 79999999999996 6666777777653 4899999999999999875322 22221 1 00000000
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccC-CcEEEEEecCC
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVP-GGRMVMPVGEP 161 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~-gG~l~~~~~~~ 161 (206)
..++.+|+++.........+.....+++ +|.+++.-...
T Consensus 93 ~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 93 KTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEec
Confidence 1334579999888877777777777655 58887765433
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.45 E-value=0.00047 Score=49.21 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=67.9
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
.++++.+||.+|||. |..+..+++..+ ..+|+++|.++..++.+++.-.. .++.. |+.+. ...
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~Ga~-----------~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQGFE-----------IADLSLDTPLHEQIAAL 89 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCE-----------EEETTSSSCHHHHHHHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcccc-----------EEEeCCCcCHHHHHHHH
Confidence 389999999999997 666677776654 34899999999999999875322 12211 11110 001
Q ss_pred CCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+++..... ...++.+.+.++|+|++++.-.
T Consensus 90 -t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 90 -LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp -HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred -hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 133456999876542 2477899999999999987743
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=9.5e-05 Score=51.82 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~ 122 (206)
++++.+||-.|+ | .|..+..+++..+ +++++++.+++..+.+++.-.. .++.. |+.+...-.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~-----------~vi~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAH-----------EVFNHREVNYIDKIKKY 92 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCS-----------EEEETTSTTHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccC--cccccccccccccccccccCcc-----------cccccccccHHHHhhhh
Confidence 789999999996 4 4777888887764 5899999898888888763221 12211 111111100
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.....+|+|+.... ...++...+.++++|+++..
T Consensus 93 t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 93 VGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCceEEeeccc-HHHHHHHHhccCCCCEEEEE
Confidence 14556799998766 45678888999999999876
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.43 E-value=0.00015 Score=50.28 Aligned_cols=99 Identities=18% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~ 123 (206)
++++.+||-.|+|+ |..+..+++..+ .++++++.++..++.+++.-.. .++.. |....... .
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~Ga~-----------~~~~~~~~~~~~~~~~-~ 90 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGAD-----------LVVNPLKEDAAKFMKE-K 90 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCS-----------EEECTTTSCHHHHHHH-H
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhcCcc-----------eecccccchhhhhccc-c
Confidence 78999999999997 666666676654 4899999999999998774221 11111 11111110 0
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++. |.++.+..-...++...+.++++|.+++.....
T Consensus 91 ~~~~-~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~ 127 (168)
T d1rjwa2 91 VGGV-HAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPP 127 (168)
T ss_dssp HSSE-EEEEESSCCHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred cCCC-ceEEeecCCHHHHHHHHHHhccCCceEeccccc
Confidence 1222 445555666777889999999999998765443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.38 E-value=0.00019 Score=49.95 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=69.1
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~ 122 (206)
+.++.+|+-+|+ | .|..+..+++..+ ...|+++|.++..++.+++.-.. .++..+ ..+...-.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAGAD-----------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHcCCc-----------eeeccCCcCHHHHHHHH
Confidence 789999999996 4 4666676776654 34899999999999998864221 122211 11111100
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+.+|+++....-...++...+.++|+|++++.-.
T Consensus 93 ~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 93 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhcccchhhhcccccchHHHhhhhhcccCCEEEEecc
Confidence 1345679999988888888889999999999987743
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.34 E-value=0.0017 Score=44.98 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-----ccccccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-----WLRHLLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-----~~~~~~~ 121 (206)
++++.+|+-.|+|. |..+..+++..+. ..|+++|.++...+.+++.=.. .++..+ .......
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~-----------~~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGAT-----------ECINPQDFSKPIQEVLIE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCc-----------EEEeCCchhhHHHHHHHH
Confidence 79999999998884 6666777777653 3889999999999998864322 222211 0000000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...+.+|+|+....-....+.....+++||.+++.....
T Consensus 94 -~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~ 132 (176)
T d2fzwa2 94 -MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA 132 (176)
T ss_dssp -HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred -HcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeec
Confidence 123457999999888888899999999998776654443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.25 E-value=0.00053 Score=48.03 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---ccc-ccc-ccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFW-LRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~-~~~-~~~ 121 (206)
++++..|+-+|+|. |..+..+++..+ ..+|+++|.+++.++.|++.-.. .++. .|. ... ...
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~GA~-----------~~in~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAVGAT-----------ECISPKDSTKPISEVLSE 94 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHHTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhcCCc-----------EEECccccchHHHHHHHH
Confidence 78999999999996 666666677664 24899999999999999987543 1221 110 000 000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcc-cCCcEEEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQL-VPGGRMVMPVGEP 161 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~l~~~~~~~ 161 (206)
.....+|+++....-....+.....+ +.+|.+++.-...
T Consensus 95 -~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 95 -MTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp -HHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred -hccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccc
Confidence 12345699888777666655555555 5558888775443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.14 E-value=0.0008 Score=49.46 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
.+.+.+++.. -.+|..|||.-||+|+.+.++.+.. .+.+|+|+++..++.|++++.
T Consensus 200 ~L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHc
Confidence 4566666655 4789999999999999988776543 399999999999999999875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.09 E-value=0.00075 Score=51.17 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..+.+.+++.. -.+|..|||.-||+|+.+..+.... .+.+|+|++++.++.|++++..
T Consensus 237 ~~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~lg---R~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 237 AKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp THHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGSC
T ss_pred hHHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHHHh
Confidence 35677777666 4789999999999999988877643 3999999999999999999865
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.01 E-value=0.0013 Score=45.71 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c---cc-ccccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F---WL-RHLLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d---~~-~~~~~ 121 (206)
++++.+||-+|+|. |..+..+++..+ ..+|+++|.++...+.+++.-.. ..+.. + .. ....
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~Ga~-----------~~i~~~~~~~~~~~~~~- 92 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGAT-----------ECVNPQDYKKPIQEVLT- 92 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHH-
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhCCe-----------eEEecCCchhHHHHHHH-
Confidence 89999999999975 445555566553 35999999999999999876432 12211 1 00 0000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVGEP 161 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~~~ 161 (206)
....+.+|+++.....+...+.....++++ |.+++....+
T Consensus 93 ~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~ 133 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPP 133 (176)
T ss_dssp HHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred HHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCC
Confidence 013456799999998888888888888887 4554444333
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.83 E-value=0.0025 Score=44.17 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=63.0
Q ss_pred cCCCCCeEEEEcccCchH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc----ccccccc
Q psy10573 47 KIKPGARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF----WLRHLLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~-~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~ 121 (206)
.++++.+|+-+|+|.+.. +..+++.. -...|+++|.+++.++.+++.=.. +++..+ .......
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~GAd-----------~~in~~~~~~~~~~~~~ 92 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGAT-----------DFVNPNDHSEPISQVLS 92 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCC-----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHcCCc-----------EEEcCCCcchhHHHHHH
Confidence 378999999999998444 44445554 345899999999999999874322 222211 0000000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEE
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMP 157 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~ 157 (206)
....+.+|+++....-..........++++ |++++.
T Consensus 93 ~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 93 KMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp HHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEE
Confidence 012345699999888887778878877766 444433
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.79 E-value=0.0025 Score=47.24 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..+...+++.. -.+|..|||.-+|+|+.+.++.... . +.+|+|+++...+.+++++..
T Consensus 194 ~~L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~lg-R--~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 194 AAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEG-R--NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHT-C--EEEEEESSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHhC-C--eEEEEeCCHHHHHHHHHHHHH
Confidence 34566666665 4789999999999999988776643 3 999999999999999999875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.78 E-value=0.0036 Score=43.14 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=66.1
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLTNPH 125 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~ 125 (206)
++.+|+-||+|. |..+...+..++ ++|+.+|.+++.++..+..+.. ++.....+ ..+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~------ 93 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAV------ 93 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHH------
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhh------
Confidence 467899999996 777787787775 5999999999999988887654 45555554 11111
Q ss_pred CCeeEEEecCChHH------HHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~ 159 (206)
...|+||.....+. +-+++.+.+|||..++=...
T Consensus 94 ~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 94 AEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp HTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred ccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence 12399988655432 33788899999998875433
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.77 E-value=0.00099 Score=46.57 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cc--cccc-ccc
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YF--WLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d--~~~~-~~~ 121 (206)
++++.+||-.|+ | .|..+..+++..+ ++++++..+++..+.+++.-.. .++. .+ +.+. ...
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~Ga~-----------~vi~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLGVE-----------YVGDSRSVDFADEILEL 89 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTCCS-----------EEEETTCSTHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcccccchhhcccc--ccceeeeccccccccccccccc-----------ccccCCccCHHHHHHHH
Confidence 688999998763 3 4788888888765 5888888888778877753211 1222 11 1111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.....+|+|+....- ..++.+.++|+++|+++..
T Consensus 90 -t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 90 -TDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp -TTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEEC
T ss_pred -hCCCCEEEEEecccc-hHHHHHHHHhcCCCEEEEE
Confidence 134568999987774 4667889999999999876
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.74 E-value=0.0016 Score=45.58 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cc--cccccccC
Q psy10573 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YF--WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d--~~~~~~~~ 122 (206)
++++.+||-.|++. |..+..+++..+ ++++++..+++..+.+++.-.. .++. .+ ..+...-.
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~-----------~vi~~~~~~~~~~~~~~ 93 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFD-----------AAFNYKTVNSLEEALKK 93 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCS-----------EEEETTSCSCHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhh-----------hhcccccccHHHHHHHH
Confidence 78999999877754 566677777654 5999999999888888765322 2222 22 11110000
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.....+|+|+..-.- ...+...+.|+++|.++..
T Consensus 94 ~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 94 ASPDGYDCYFDNVGG-EFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HCTTCEEEEEESSCH-HHHHHHGGGEEEEEEEEEC
T ss_pred hhcCCCceeEEecCc-hhhhhhhhhccCCCeEEee
Confidence 134567999987764 5678899999999999876
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0017 Score=45.10 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
++++.+||-.|+| .|..+..+++..+ +++++++.+++..+.+++.-.. +++.. |+.+. ...
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~-----------~vi~~~~~d~~~~v~~~ 92 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAW-----------QVINYREEDLVERLKEI 92 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCe-----------EEEECCCCCHHHHHHHH
Confidence 7889999888655 4677788887764 5999999999999998864321 22221 11111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+|+....-+ .++.....++++|+++....
T Consensus 93 -t~g~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 93 -TGGKKVRVVYDSVGRD-TWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp -TTTCCEEEEEECSCGG-GHHHHHHTEEEEEEEEECCC
T ss_pred -hCCCCeEEEEeCccHH-HHHHHHHHHhcCCeeeeccc
Confidence 1345679988877644 56788899999998876543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.42 E-value=0.019 Score=39.12 Aligned_cols=89 Identities=15% Similarity=0.022 Sum_probs=53.6
Q ss_pred eEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 53 RILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 53 ~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
+|+=+|||. |..........+...+|+++|.+++.++.+++.-. +.....+.... .....|+|
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----------~~~~~~~~~~~-----~~~~~dlI 66 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----------IDEGTTSIAKV-----EDFSPDFV 66 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----------CSEEESCGGGG-----GGTCCSEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----------chhhhhhhhhh-----hccccccc
Confidence 577799986 54333333333455689999999999999886421 11111121111 11223999
Q ss_pred EecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 132 QSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 132 ~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
+...+... +++++...++++.+++-.
T Consensus 67 ila~p~~~~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 67 MLSSPVRTFREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp EECSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCchhhhhhhhhhhcccccccccccc
Confidence 88877654 556777778877655433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.0068 Score=41.84 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCC
Q psy10573 47 KIKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNP 124 (206)
Q Consensus 47 ~~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 124 (206)
.++++.+||-.|+ | .|..+..+++..+ +++++++.+++..+.+++.-.+ .+ +-..+...... .
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~---------~~-i~~~~~~~~~~---~ 88 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAE---------EA-ATYAEVPERAK---A 88 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCS---------EE-EEGGGHHHHHH---H
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccccccc---------ee-eehhhhhhhhh---c
Confidence 3789999998874 4 3677777887754 5899999999888888763221 11 11112111111 2
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
...+|+|+.... ..++...+.|+++|+++..
T Consensus 89 ~~g~D~v~d~~G--~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 89 WGGLDLVLEVRG--KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp TTSEEEEEECSC--TTHHHHHTTEEEEEEEEEC
T ss_pred cccccccccccc--hhHHHHHHHHhcCCcEEEE
Confidence 345699987544 2457788999999999865
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.27 E-value=0.011 Score=46.05 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=37.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAG------PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~------~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+..+|+|+|+|+|.++..+++.+. ...+++.+|.|+...+.-++++..
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence 345899999999999988876542 234688999999888777776653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.97 E-value=0.019 Score=39.75 Aligned_cols=102 Identities=11% Similarity=-0.079 Sum_probs=65.2
Q ss_pred CCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
..++.+||--|++ .|..+..+++..+ ++++++..+++-.+.+++.-.. .+--...+..+.. ....+
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~G--a~Viat~~s~~k~~~~~~lGa~---------~vi~~~~~~~~~~-~~~~~ 96 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAERI-RPLDK 96 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHTTCS---------EEEECC----------CCS
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcC--CceEEecCchHHHHHHHhcccc---------eeeecchhHHHHH-HHhhc
Confidence 5667889877754 4677778887754 5899999888888888764332 1110011111111 11245
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+|+|+....-. .++...++|+++|+++.+.....
T Consensus 97 ~gvD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g 132 (176)
T d1xa0a2 97 QRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGG 132 (176)
T ss_dssp CCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSS
T ss_pred cCcCEEEEcCCch-hHHHHHHHhCCCceEEEeecccC
Confidence 6789988765533 56888999999999988766543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.057 Score=37.41 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=60.3
Q ss_pred CCCC--CeEEEEc--ccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccc
Q psy10573 48 IKPG--ARILDIG--SGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLL 120 (206)
Q Consensus 48 ~~~~--~~vLDlG--~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~ 120 (206)
++++ ..||-.| .|.|..+..+++..+.. .|+++..+++......+.+.. -.++... ..+...
T Consensus 26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~-~vi~~~~~~e~~~~l~~~~ga----------d~vi~~~~~~~~~~~~ 94 (187)
T d1vj1a2 26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCS-RVVGICGTQEKCLFLTSELGF----------DAAVNYKTGNVAEQLR 94 (187)
T ss_dssp CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCS-EEEEEESSHHHHHHHHHHSCC----------SEEEETTSSCHHHHHH
T ss_pred CCCCCCCEEEEECCCchhhHHHHHHHHHcCCc-ceecccchHHHHhhhhhcccc----------eEEeeccchhHHHHHH
Confidence 5665 6788766 34699999999887533 677777776665555443321 1222211 111111
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
- ..+..+|+|+....- ..++...+.|+++|+++.+
T Consensus 95 ~-~~~~GvDvv~D~vGg-~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 95 E-ACPGGVDVYFDNVGG-DISNTVISQMNENSHIILC 129 (187)
T ss_dssp H-HCTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred H-HhccCceEEEecCCc-hhHHHHhhhccccccEEEe
Confidence 0 123457999987764 4568889999999999765
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.63 E-value=0.026 Score=38.69 Aligned_cols=101 Identities=14% Similarity=-0.009 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
..++..||--|+ |.|..+..+++..+ ++|+++..+++-.+.+++.-.. .+ +...+...........
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~lGad---------~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQLGAS---------EV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHHTCS---------EE-EEHHHHCSSCCCSSCC
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHhhccc---------ce-EeccchhchhhhcccC
Confidence 345666776653 34788888888875 5899999888888888764332 11 1112211111111245
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+|+|+....-. .+++..+.|+++|+++..-...
T Consensus 89 ~gvd~vid~vgg~-~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 89 QQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp CCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSS
T ss_pred CCceEEEecCcHH-HHHHHHHHhccCceEEEeeccC
Confidence 6789998776644 5578899999999998765443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.49 E-value=0.0098 Score=43.68 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhC---C------------------------------------CceEEEEeCCHHHHH
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAG---P------------------------------------EGRVYGVEHVMELAE 89 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~---~------------------------------------~~~v~~iD~s~~~~~ 89 (206)
.++..++|-.||+|++.+..+-... | ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 4556799999999999987754210 0 123466777777777
Q ss_pred HHH---HhhhccCccccCCCceEEEEcccccccccC--CCCCCeeEEEecCCh---------------HHHHHHHHhccc
Q psy10573 90 SSI---KNIDKGNSELLDQGRVQFVAYFWLRHLLLT--NPHGSTRVIQSCWTK---------------EEYNSWLLDQLV 149 (206)
Q Consensus 90 ~a~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~ 149 (206)
.++ +++...+. ...+++...|+.+..+.. .++...++|++|++. ..+...+.+.+.
T Consensus 129 ~A~~~r~n~~~Agl----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 129 AARRLRERLTAEGG----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHTTS----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCC----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 763 45554332 246788888833222110 123445899999885 123345666675
Q ss_pred CCcEEEEE
Q psy10573 150 PGGRMVMP 157 (206)
Q Consensus 150 ~gG~l~~~ 157 (206)
....++++
T Consensus 205 ~~s~~~it 212 (249)
T d1o9ga_ 205 AHAVIAVT 212 (249)
T ss_dssp TTCEEEEE
T ss_pred CCcEEEEe
Confidence 54555544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.36 E-value=0.016 Score=40.31 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
++.+|+-||+|. |..+...+..++ ++|+.+|.++..++..++....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~ 74 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGK 74 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCE
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcc
Confidence 467899999997 777777777765 5999999999999999876543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0088 Score=45.51 Aligned_cols=77 Identities=18% Similarity=0.010 Sum_probs=48.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
..+|+|+.||.|.++..+... |-.. -+.++|+++.+.+..+.++.. ..++.+|..+...-.++...+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~~----------~~~~~~di~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPH----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCCC----------CCcccCchhhCCHhHcCCCCcc
Confidence 457999999999998877543 3322 367899999999988877632 3445555221110001233459
Q ss_pred EEEecCChH
Q psy10573 130 VIQSCWTKE 138 (206)
Q Consensus 130 ~i~~~~~~~ 138 (206)
+++..+++.
T Consensus 71 ll~ggpPCq 79 (343)
T d1g55a_ 71 MILMSPPCQ 79 (343)
T ss_dssp EEEECCC--
T ss_pred EEEeecccc
Confidence 999988874
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.54 E-value=0.13 Score=39.58 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=30.1
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCC-CCeEEEEcccCchHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTA 66 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~ 66 (206)
.-.|.+++...........|.+.+.+.+.......+ .-+|.|+||.+|..+.
T Consensus 15 ~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl 67 (359)
T d1m6ex_ 15 ENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNAL 67 (359)
T ss_dssp STTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHH
Confidence 345665554433333335565666666654422222 2579999999998773
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.52 E-value=0.075 Score=39.63 Aligned_cols=70 Identities=11% Similarity=-0.056 Sum_probs=47.4
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+|||+-||-|.+..-+.... -. .+.++|+++.+.+..+.++.. .++.+|..+...-.++ .+|+++
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG-~~-~~~a~e~d~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~--~~dll~ 66 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAG-FR-IICANEYDKSIWKTYESNHSA-----------KLIKGDISKISSDEFP--KCDGII 66 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHT-CE-EEEEEECCHHHHHHHHHHCCS-----------EEEESCTTTSCGGGSC--CCSEEE
T ss_pred eEEEeCcCcCHHHHHHHHCC-CE-EEEEEeCCHHHHHHHHHHCCC-----------CCccCChhhCCHhHcc--cccEEe
Confidence 69999999999998876543 22 456999999999888777532 3455663222111112 359999
Q ss_pred ecCCh
Q psy10573 133 SCWTK 137 (206)
Q Consensus 133 ~~~~~ 137 (206)
..+++
T Consensus 67 ~g~PC 71 (324)
T d1dcta_ 67 GGPPC 71 (324)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 88775
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.50 E-value=0.2 Score=33.53 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=49.2
Q ss_pred eEEEEcccC-ch-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 53 RILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~-G~-~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+|.=||+|. |. ++..+.+ .+-+|+++|.+++.++.+++.-. +.....+....... |+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~~~~-----------~~~~~~~~~~~~~~-------Di 60 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVERQL-----------VDEAGQDLSLLQTA-------KI 60 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTTS-----------CSEEESCGGGGTTC-------SE
T ss_pred EEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHHhhc-----------cceeeeeccccccc-------cc
Confidence 466688885 43 3344443 23489999999988887765321 11111121111223 99
Q ss_pred EEecCChH---HHHHHHHhcccCCcEEEEE
Q psy10573 131 IQSCWTKE---EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 131 i~~~~~~~---~~~~~~~~~L~~gG~l~~~ 157 (206)
|+...+.. .+++++...++++.+++-.
T Consensus 61 Iilavp~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 61 IFLCTPIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp EEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred ccccCcHhhhhhhhhhhhhhcccccceeec
Confidence 98876654 4667777777777765433
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.34 E-value=0.05 Score=40.97 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=37.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..+.+|||+.||-|.++..+.+. |-. -+.++|+++.+.+..+.+...
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~a-G~~-~v~a~e~d~~a~~~~~~N~~~ 55 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESC-GAE-CVYSNEWDKYAQEVYEMNFGE 55 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHT-TCE-EEEEECCCHHHHHHHHHHHSC
T ss_pred CCCCeEEEECccccHHHHHHHHC-CCe-EEEEEeCCHHHHHHHHHHCCC
Confidence 46789999999999999887653 321 456789999999999888754
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.82 E-value=0.14 Score=39.95 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=41.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.++..++|+|+-.|..+..++.... ...+|+++|+++...+..++++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 35677999999999999988776552 345899999999999999988765
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.15 Score=35.08 Aligned_cols=95 Identities=13% Similarity=-0.057 Sum_probs=61.0
Q ss_pred CCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCC
Q psy10573 50 PGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHG 126 (206)
Q Consensus 50 ~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~ 126 (206)
++..||-.|+. .|..+..+++..+ ++++++..+++..+.+++.-.+ .++..+ ...... +...
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~~lGad-----------~vi~~~~~~~~~~--l~~~ 95 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLGAS-----------RVLPRDEFAESRP--LEKQ 95 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTEE-----------EEEEGGGSSSCCS--SCCC
T ss_pred CCCcEEEEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHHhhccc-----------cccccccHHHHHH--HHhh
Confidence 34567755432 4677788887765 5899999999888888754322 223222 111112 2556
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|.++ +......+....+.|+++|+++.+-..
T Consensus 96 ~~~~vv-D~Vgg~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 96 VWAGAI-DTVGDKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp CEEEEE-ESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred cCCeeE-EEcchHHHHHHHHHhccccceEeeccc
Confidence 678876 445556778999999999999887443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.69 E-value=0.27 Score=33.76 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcc--c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccc-
Q psy10573 48 IKPGARILDIGS--G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLL- 120 (206)
Q Consensus 48 ~~~~~~vLDlG~--G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~- 120 (206)
++++..||-+.+ | .|..+..+++..+ ++++++-.++...+...+.+.+.+ --.++..+ ..+...
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lG-------ad~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELG-------ATQVITEDQNNSREFGPT 96 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHT-------CSEEEEHHHHHCGGGHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhcc-------ccEEEeccccchhHHHHH
Confidence 688888777733 3 3667777887765 477776434333333333332211 11233222 111000
Q ss_pred ---c-CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 121 ---L-TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 121 ---~-~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
. ....+.+|+++....-+ ......+.|+++|+++..
T Consensus 97 v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCCcEEEEE
Confidence 0 00234579998766544 457778999999999765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.59 E-value=0.036 Score=40.61 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=37.1
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.++.+|..+... .++++++|+|+.+++. ...+.++.++|+|+|.+++....
T Consensus 6 ~~~~~D~le~l~-~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 6 VYDVCDCLDTLA-KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEEECCHHHHHH-TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred eEEechHHHHHh-hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 466677444333 3488999999998873 23557899999999999887643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.89 Score=32.73 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=50.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------C
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-------T 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-------~ 122 (206)
+++.+|--|++.|.-...+......+.+|+.++.+++.++.+.+.+.... ...++.++..|..+.... .
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCCHHHHHHHHHHHH
Confidence 46788888877664433322222345699999999998888777766522 123677888883222110 0
Q ss_pred CCCCCeeEEEecCC
Q psy10573 123 NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 ~~~~~~D~i~~~~~ 136 (206)
-..+..|+++.+..
T Consensus 85 ~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 85 SQHSGVDICINNAG 98 (257)
T ss_dssp HHHCCCSEEEECCC
T ss_pred HhcCCCCEEEeccc
Confidence 01255699988765
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.56 Score=34.12 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=64.9
Q ss_pred CCeEEEEcccCchHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-------c
Q psy10573 51 GARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-------L 121 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------~ 121 (206)
|++|.=|..|++..+..+++.+. .+.+|+.++.+++.++.+.+.+...+ .++.++..|..+... .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHHH
Confidence 67776665566666655554432 24589999999999888887776522 467888888322111 0
Q ss_pred CCCCCCeeEEEecCCh--------------H-----------HHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTK--------------E-----------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~--------------~-----------~~~~~~~~~L~~gG~l~~~~ 158 (206)
.-..+..|+++.|... + .+.+.+...++++|+++...
T Consensus 76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 0012567999998763 0 13366777888889877654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.31 E-value=0.34 Score=30.30 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=55.9
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEe--CCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVE--HVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+.+||-+|.|. |.--...... .+++++.++ .+++....+.+ .+++++...+.. ..+ .
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~~~~~~~~------------~~i~~~~~~~~~-~dl----~ 71 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQFTVWANE------------GMLTLVEGPFDE-TLL----D 71 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHHHHHHHTT------------TSCEEEESSCCG-GGG----T
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChHHHHHHhc------------CCceeeccCCCH-HHh----C
Confidence 478999999986 3222222222 345777764 44444443321 356777665222 112 2
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+++|+....-+.+..++.+..++-|+++-..-.
T Consensus 72 ~~~lv~~at~d~~~n~~i~~~a~~~~ilVNv~D~ 105 (113)
T d1pjqa1 72 SCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDA 105 (113)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred CCcEEeecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence 2388988888788888888888889988765443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.21 E-value=0.098 Score=38.83 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=40.5
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCCh--------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+-.++.+|..+.+. .++++++|+|+.+++. ...+..+.++|+++|.+++.....
T Consensus 12 ~~~l~~GD~le~l~-~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 12 NGSMYIGDSLELLE-SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp SEEEEESCHHHHGG-GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCEEEehhHHHHHh-hCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch
Confidence 34788899544333 2489999999999873 235688999999999999876653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.64 E-value=0.081 Score=38.08 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=35.0
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCCh--------------------HHHHHHHHhcccCCcEEEEEe
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.++.+|..+... .++++++|+|+.+++. ...++++.++|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~-~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLD-QVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHH-HSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHh-hCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 367778444333 2488899999998873 125578999999999887654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.29 E-value=2.2 Score=30.49 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=49.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----c---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----L--- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~--- 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+...+ .++..+..|..+... +
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 4778887776655 333333332 245699999999999988888776522 367788888322110 0
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 77 ~~~~g~iDilVnnaG 91 (260)
T d1zema1 77 VRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCeehhhhc
Confidence 001245698887644
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=1.3 Score=31.51 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----c---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----L--- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~--- 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+.. +...+..|..+... +
T Consensus 3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~~~~~ 72 (243)
T d1q7ba_ 3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLGA---------NGKGLMLNVTDPASIESVLEKI 72 (243)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC---------CCcEEEEEecCHHHhhhhhhhh
Confidence 3567776666554 444444333 2456999999999888877766543 56677777322110 0
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 73 ~~~~g~iDilVnnAg 87 (243)
T d1q7ba_ 73 RAEFGEVDILVNNAG 87 (243)
T ss_dssp HHHTCSCSEEEECCC
T ss_pred hcccCCcceehhhhh
Confidence 001256699987754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.91 E-value=0.9 Score=28.80 Aligned_cols=91 Identities=10% Similarity=-0.041 Sum_probs=54.7
Q ss_pred ccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-CCCCCeeEEEecCCh
Q psy10573 59 SGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT-NPHGSTRVIQSCWTK 137 (206)
Q Consensus 59 ~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~D~i~~~~~~ 137 (206)
||.|..+..+++.+ .+..+..+|.++...+..+. ..+.++.+|..+..-+. ..=.+.+.+++...-
T Consensus 6 ~G~g~~g~~l~~~L-~~~~i~vi~~d~~~~~~~~~------------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLREL-RGSEVFVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGARAVIVNLES 72 (129)
T ss_dssp ESCCHHHHHHHHTS-CGGGEEEEESCTTHHHHHHH------------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred ECCCHHHHHHHHHH-cCCCCEEEEcchHHHHHHHh------------cCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence 45677888888877 45578899999988776643 35788889932221110 012234666554332
Q ss_pred HH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 138 EE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 138 ~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.. ......+.+.|...++..+....
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~~~~~ 100 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEAERYE 100 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred hhhhHHHHHHHHHHCCCceEEEEEcCHH
Confidence 21 22344566788877777665543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.35 E-value=1.6 Score=27.60 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=49.4
Q ss_pred eEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCeeE
Q psy10573 53 RILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~ 130 (206)
+|+-+|+ |..+..+++.+. .+..++.+|.+++.++.+.+.+ ...++.+|..+..-+ ...-...|.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhhhhcChhhhhh
Confidence 5666776 555555554432 2348999999999888776542 356788883221111 012234577
Q ss_pred EEecCChHH---HHHHHHhcccCCcEE
Q psy10573 131 IQSCWTKEE---YNSWLLDQLVPGGRM 154 (206)
Q Consensus 131 i~~~~~~~~---~~~~~~~~L~~gG~l 154 (206)
+++...-+. +.....+.+.+..++
T Consensus 69 vv~~t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 69 YIAVTGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCCEE
T ss_pred hcccCCcHHHHHHHHHHHHHcCCceEE
Confidence 776433322 223444556666443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=88.81 E-value=2 Score=27.92 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=49.0
Q ss_pred eEEEEcccC-ch-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 53 RILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~-G~-~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+|.=||||+ |. ++..+.+.. + -+++.+|.+++.++...+.+ .+... .+...-.. .|+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~-~-~~i~v~~r~~~~~~~l~~~~-----------~~~~~-~~~~~v~~-------~Di 60 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG-G-YRIYIANRGAEKRERLEKEL-----------GVETS-ATLPELHS-------DDV 60 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-S-CEEEEECSSHHHHHHHHHHT-----------CCEEE-SSCCCCCT-------TSE
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-C-CcEEEEeCChhHHHHhhhhc-----------ccccc-cccccccc-------cce
Confidence 466688886 44 333344432 3 38999999998887766543 12222 12111111 288
Q ss_pred EEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 131 IQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 131 i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+..-.. +....+.+.+++.+.+++++..+
T Consensus 61 v~lavkP-~~~~~v~~~l~~~~~~viS~~ag 90 (152)
T d1yqga2 61 LILAVKP-QDMEAACKNIRTNGALVLSVAAG 90 (152)
T ss_dssp EEECSCH-HHHHHHHTTCCCTTCEEEECCTT
T ss_pred EEEecCH-HHHHHhHHHHhhcccEEeecccC
Confidence 8876553 33455566666666677765543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.71 E-value=2.1 Score=30.50 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+.. +..++..|..+....
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~~~~~~~~~ 74 (253)
T d1hxha_ 5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE---------RSMFVRHDVSSEADWTLVMAAV 74 (253)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT---------TEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---------CeEEEEeecCCHHHHHHHHHHH
Confidence 4677776665554 444444433 2456999999999888777665532 466677772211000
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 75 ~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 75 QRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHCSCCEEEECCC
T ss_pred HHHhCCCCeEEeccc
Confidence 001245699988765
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.54 E-value=3 Score=29.60 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=50.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++. ..+..+++.+. .+.+|+.++.+++.++.+.+.+...+ .++..+..|..+....
T Consensus 9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 456677666554 46666655543 45699999999998888887776522 3577888883222110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 82 ~~~~g~iDilvnnag 96 (251)
T d2c07a1 82 LTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHCSCCCEEEECCC
T ss_pred HHhcCCceeeeeccc
Confidence 002256699988765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.63 E-value=4 Score=28.93 Aligned_cols=81 Identities=14% Similarity=0.003 Sum_probs=46.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----c---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----L--- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~--- 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|..+|.+++.++.+.+.+... ...++..+..|..+... +
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-----~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK-----YGVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----HCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-----hCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4677887777665 333333332 24569999999988777666555331 11357777888322111 0
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 78 ~~~~g~iDiLVnnAG 92 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAG 92 (251)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 001245699988765
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.27 E-value=3.2 Score=27.47 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
+.++++||-+|||- +......+...+. .+++.+..+.+..+...+.+
T Consensus 14 ~~~~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 14 LNKNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp CCTTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHHHHHhh
Confidence 45678999999984 4444444444432 37888898887666655544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.19 E-value=3.3 Score=27.62 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=26.2
Q ss_pred eEEEEcccC-chHHHHHHHHhCCCceEEEE-eCCHHHHHHHHHh
Q psy10573 53 RILDIGSGS-GYLTACLAYMAGPEGRVYGV-EHVMELAESSIKN 94 (206)
Q Consensus 53 ~vLDlG~G~-G~~~~~l~~~~~~~~~v~~i-D~s~~~~~~a~~~ 94 (206)
+|.=+|||. |.......... ++.+++++ |.+++..+...+.
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~ 45 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATA 45 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhc
Confidence 566789985 55444444444 56688866 8888766555444
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=86.15 E-value=4.1 Score=28.63 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCCeEEEEcccCchHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc----C--
Q psy10573 50 PGARILDIGSGSGYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL----T-- 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~-- 122 (206)
.++.+|-.|++.|. +..+++. ...+.+|+.++.+.+.++...+.+. .++.++..|..+.... .
T Consensus 4 ~gK~alItGas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 4 SGKTILVTGAASGI-GRAALDLFAREGASLVAVDREERLLAEAVAALE---------AEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC---------SSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CceEEEEecCCCHHHHHHHHHHH
Confidence 46788877777554 3333333 3356799999999987766655432 3677788883222110 0
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-.-+..|+++.+..
T Consensus 74 ~~~~g~iDiLinnAg 88 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAG 88 (241)
T ss_dssp HHHHSCCCEEEEGGG
T ss_pred HHHhCCccEeccccc
Confidence 01145699888755
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.03 E-value=2.2 Score=30.65 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=48.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+.. ...+.++..|..+....
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHHH
Confidence 4678887787665 344444332 3456999999999988887776643 23577788883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-..+..|+++.+..
T Consensus 77 ~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 77 IAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCcceeccccc
Confidence 001245698887654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.59 E-value=2.3 Score=30.42 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCCeEEEEcccCchHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----c---
Q psy10573 50 PGARILDIGSGSGYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----L--- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~--- 121 (206)
.++.+|-.|++.| .+..+++. ...+.+|+.++.++..++.+.+.+...+ .++.++..|..+... +
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeecCCHHHHHHHHHHH
Confidence 5788887887654 43334332 2245699999999988888877776522 457788888322111 0
Q ss_pred -CCCCCCeeEEEecCC
Q psy10573 122 -TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 -~~~~~~~D~i~~~~~ 136 (206)
..-++..|+++.+..
T Consensus 78 ~~~~~g~idilinnag 93 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNAG 93 (258)
T ss_dssp HHHTTSCCCEEEECCC
T ss_pred HHHhCCCcEEEecccc
Confidence 011355688887654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=85.15 E-value=2.1 Score=27.82 Aligned_cols=100 Identities=9% Similarity=0.027 Sum_probs=52.7
Q ss_pred eEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCeeE
Q psy10573 53 RILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~ 130 (206)
+++=+|+| ..+..+++.+. .+..++.+|.+++......+.... ..+.++.+|..+..-+ ...-...|.
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--------~~~~vi~Gd~~d~~~L~~a~i~~a~~ 74 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--------CCcEEEEccCcchHHHHHhccccCCE
Confidence 56666665 45555544331 234889999888654333333222 3688899983222111 001223476
Q ss_pred EEecCChH-H--HHHHHHhcccCCcEEEEEecCCC
Q psy10573 131 IQSCWTKE-E--YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 131 i~~~~~~~-~--~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++...-+ . ......+.+.|...++..+....
T Consensus 75 vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~ 109 (153)
T d1id1a_ 75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred EEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence 76644322 2 22334555677777777666544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.09 E-value=3.5 Score=26.80 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
..+.+|--+|+|. |....+.+...+-..++..+|+.++..
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~ 44 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA 44 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence 3456888899875 555555444433334799999998763
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.02 E-value=1.9 Score=30.61 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.|+.+|--|++.|. +..+++.+ ..+.+|+.+|.+++.++...+.+...+ .++..+..|..+....
T Consensus 6 ~Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 6 TGEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 46677766766653 33343332 245699999999998888877776522 4678888883222110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-..+..|+++.+..
T Consensus 79 ~~~~g~idilinnag 93 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAG 93 (244)
T ss_dssp HHHTCCCSEEEECCC
T ss_pred HHHcCCCceeEeecc
Confidence 002355699988766
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.36 E-value=3.1 Score=29.61 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=49.2
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.|+.+|--|++ +..+..+++.+ ..+++|+.++.+++.++.+.+.+...+ .++.++..|..+....
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 46777755655 44555554443 356799999999998888877776522 3677788883322110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 83 ~~~~g~iDilvnnAG 97 (255)
T d1fmca_ 83 ISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEeeeCCc
Confidence 001145698888754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.59 E-value=2.7 Score=30.26 Aligned_cols=83 Identities=16% Similarity=0.049 Sum_probs=49.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+ ....++..+..|..+....
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG---VSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCCCceEEEEccCCCHHHHHHHHHHH
Confidence 3667776676554 444444333 245699999999999888888776522 1124688888883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 80 ~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCceEEEeCCc
Confidence 001245698887643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.25 E-value=4.5 Score=26.61 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=51.0
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC---CceEEEEcccccccccCCCCCC
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ---GRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
++|--+|+|. |......+... +..|+.+|.++..++..++.-...... ... ........|..+. . ..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~--~----~~ 72 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEG-PGLAGTAHPDLLTSDIGLA--V----KD 72 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEES-SSCCEEECCSEEESCHHHH--H----TT
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhh-hhhhhhhhhhhhhhhhHhH--h----cC
Confidence 4677789986 43333333332 248999999998887776542210000 000 0011111121111 1 12
Q ss_pred eeEEEecCCh---HHHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTK---EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~ 157 (206)
.|+|++.-.. ..+++++...++++..++..
T Consensus 73 aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 73 ADVILIVVPAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp CSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred CCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence 3888875443 34667888888888866543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.14 E-value=2.7 Score=30.31 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=49.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.|+.+|--|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+...+. ...++..+..|..+....
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV---PAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEEeeCCCHHHHHHHHHHH
Confidence 3677776676655 444444333 2456999999999988888777765221 124688888883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 79 ~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 79 LAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCceEEEeecc
Confidence 001245699988644
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.04 E-value=3.7 Score=29.06 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=46.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----c---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----L--- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~--- 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+.. +..++..|..+... +
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~~~~~ 74 (244)
T d1nffa_ 5 TGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD---------AARYVHLDVTQPAQWKAAVDTA 74 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG---------GEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC---------cceEEEeecCCHHHHHHHHHHH
Confidence 4677887777665 344343332 2456999999999888777766543 56777888322111 0
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-..+..|+++.+..
T Consensus 75 ~~~~g~idilinnAG 89 (244)
T d1nffa_ 75 VTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCeEEEECCc
Confidence 001245699988755
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=81.37 E-value=5 Score=28.39 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=47.7
Q ss_pred CCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------C
Q psy10573 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-------T 122 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-------~ 122 (206)
++.+|--|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+ .++.++..|..+.... .
T Consensus 2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG------VEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeecCCHHHHHHHHHHHH
Confidence 445565565544 444444433 245699999999998888877776522 3678888883221110 0
Q ss_pred CCCCCeeEEEecCC
Q psy10573 123 NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 ~~~~~~D~i~~~~~ 136 (206)
-.-+..|+++.+..
T Consensus 75 ~~~g~iDilVnnAG 88 (257)
T d2rhca1 75 ERYGPVDVLVNNAG 88 (257)
T ss_dssp HHTCSCSEEEECCC
T ss_pred HHhCCCCEEEeccc
Confidence 01256699988755
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.12 E-value=3.5 Score=29.39 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=49.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.| .+..+++.+ ..+++|+.++.+++.++.+.+.+...+ ....++.++..|..+....
T Consensus 4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG---VSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCcCceEEEEccCCCHHHHHHHHHHH
Confidence 3666776666554 444444333 355699999999998888877765522 1124688888883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 80 ~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 80 LGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCEeecccc
Confidence 001245698887644
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=81.03 E-value=2.4 Score=30.77 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=47.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.|+.+|--|++.| .+..+++.+ ..+.+|+.+|.++..++.+.+.+... ...++.++..|..+....
T Consensus 24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~-----~g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ-----TGNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----HSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh-----cCCceEEEEecccChHHHHHHhhhh
Confidence 3577887776654 444444432 24469999999998877766655431 113567777883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-..+..|+++.+..
T Consensus 98 ~~~~g~iDilvnnAg 112 (294)
T d1w6ua_ 98 IKVAGHPNIVINNAA 112 (294)
T ss_dssp HHHTCSCSEEEECCC
T ss_pred hhhccccchhhhhhh
Confidence 012356699888755
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.95 E-value=4.9 Score=28.50 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=44.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCC-HHHHHHHHHhhhccCccccCCCceEEEEccccccccc------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV-MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------ 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------ 121 (206)
.++.+|--|++.| .+..+++.+ ..+.+|+.++.+ +..++.+.+.+... ...++.++..|..+....
T Consensus 3 ~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~-----~g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-----HGVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-----HTSCEEEECCCTTSHHHHHHHHHH
T ss_pred CcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHH
Confidence 4677775565554 444444333 245689999986 45666655554331 113677888883221110
Q ss_pred -CCCCCCeeEEEecCC
Q psy10573 122 -TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 -~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 77 ~~~~~G~iDiLVnnAG 92 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAG 92 (260)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHHHhCCCcEEEeecc
Confidence 001245699988765
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=4.7 Score=28.36 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=46.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc---CCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL---TNP 124 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~ 124 (206)
-.|+++|--|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+ .++..+..|..+.... .-.
T Consensus 5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHH
Confidence 35788887887665 333343332 24569999999998877666543 2466677773222110 012
Q ss_pred CCCeeEEEecCC
Q psy10573 125 HGSTRVIQSCWT 136 (206)
Q Consensus 125 ~~~~D~i~~~~~ 136 (206)
-+..|+++.+..
T Consensus 74 ~g~iDilVnnAg 85 (244)
T d1pr9a_ 74 VGPVDLLVNNAA 85 (244)
T ss_dssp CCCCCEEEECCC
T ss_pred hCCceEEEeccc
Confidence 256799987655
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.66 E-value=4 Score=28.96 Aligned_cols=80 Identities=13% Similarity=0.010 Sum_probs=46.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEE-eCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------ 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------ 121 (206)
.|+.+|--|+ ++..+..+++.+ ..+.+|+.. ..++...+.+.+.+...+ .++..+..|..+....
T Consensus 5 ~GK~alITGa-s~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 5 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC------CCceEecCCCCCHHHHHHHHHH
Confidence 4778886664 455555554443 244577764 567777777777766522 3677888883221100
Q ss_pred -CCCCCCeeEEEecCC
Q psy10573 122 -TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 -~~~~~~~D~i~~~~~ 136 (206)
.-..+..|+++.+..
T Consensus 78 ~~~~~g~idilinnag 93 (259)
T d1ja9a_ 78 AVSHFGGLDFVMSNSG 93 (259)
T ss_dssp HHHHHSCEEEEECCCC
T ss_pred HHHHcCCCcEEEeccc
Confidence 012355799988766
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.52 E-value=4.7 Score=28.64 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.|. +..+++.+ ..+++|+.+|.+++.++...+.+. .++.++..|..+....
T Consensus 4 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 73 (254)
T d1hdca_ 4 SGKTVIITGGARGL-GAEAARQAVAAGARVVLADVLDEEGAATARELG---------DAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCSEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEcccCCHHHHHHHHHHH
Confidence 46788877777653 33333332 245699999999987776655442 3677888883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 74 ~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 74 REEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCccEEEecCc
Confidence 001245698887755
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=80.32 E-value=4.9 Score=28.54 Aligned_cols=82 Identities=17% Similarity=0.024 Sum_probs=47.9
Q ss_pred CCCeEEEEcccCchHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|--|++.|.- ..+++. ...+++|+.+|.+++.++.+.+.+.... ...++..+..|+.+....
T Consensus 3 ~gK~alITGas~GIG-~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLG-RATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp TTCEEEEETTTSHHH-HHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEeccCCCHHHHHHHHHHH
Confidence 367777777766533 333322 2245699999999998887776665411 123677788883221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 78 ~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHHhCCCCEEEECCc
Confidence 001245699887654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.32 E-value=0.99 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
-.++++|-.|++.| .+..+++. ...+++|+.++.+++.++...+.+..
T Consensus 21 l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~ 69 (191)
T d1luaa1 21 VKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK 69 (191)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHh
Confidence 36788998886554 33333222 22456999999999888877776654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.28 E-value=4.5 Score=26.30 Aligned_cols=43 Identities=19% Similarity=0.059 Sum_probs=28.7
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
.++||-+|+|- |..+...+.. .+-+|+.+|.+....+...+.+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~~~a~~l~~~~ 45 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTLESAKKLSAGV 45 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCHHHHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECChHHHHHHHhcc
Confidence 46888899863 5444333222 2348999999999888776654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=80.28 E-value=0.51 Score=31.15 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=46.9
Q ss_pred eEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCCeeE
Q psy10573 53 RILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~D~ 130 (206)
+|.-+|+|. |......+...+ ..|+.++.++...... ..... ........+..+ ..... .+|+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~-------~~D~ 66 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSV----NLVET--DGSIFNESLTANDPDFLA-------TSDL 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEE----EEECT--TSCEEEEEEEESCHHHHH-------TCSE
T ss_pred EEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHHHhhhh----ccccC--Cccccccccccchhhhhc-------ccce
Confidence 678899986 544443333332 3899998776421110 00000 000001111112 11112 3499
Q ss_pred EEecCCh---HHHHHHHHhcccCCcEEEEEecC
Q psy10573 131 IQSCWTK---EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 131 i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+..... ...++.+...++++..++....+
T Consensus 67 iii~vka~~~~~~~~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 67 LLVTLKAWQVSDAVKSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp EEECSCGGGHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred EEEeecccchHHHHHhhccccCcccEEeeccCc
Confidence 9886554 34567777788888877665443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.23 E-value=1.7 Score=29.70 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=56.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-------Ccccc----------CCCceEEEEc
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-------NSELL----------DQGRVQFVAY 113 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~----------~~~~i~~~~~ 113 (206)
.+|--+|+|+ |.....+... .+..|+.+|.+++.++.+++++... +.... ...++.+..
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~- 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST- 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-
T ss_pred EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-
Confidence 4788899987 5444433333 3359999999999988887766531 00000 001222221
Q ss_pred ccccccccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|..+. -...|+|+-.-.- ..++.++.+.++++.+|...+.+.
T Consensus 82 d~~~a------~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l 128 (192)
T d1f0ya2 82 DAASV------VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL 128 (192)
T ss_dssp CHHHH------TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred hhHhh------hcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc
Confidence 11110 1123788775442 346778888888888776665543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.11 E-value=5.8 Score=28.01 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=49.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.|+.+|--|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+... ....++.++..|..+....
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ----FEPQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT----SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----cCCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3677776776654 444444433 25569999999999888877766541 1124688888883222110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 77 ~~~~G~iDilVnnAg 91 (254)
T d2gdza1 77 VDHFGRLDILVNNAG 91 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCcCeeccccc
Confidence 001245699988766
|