Psyllid ID: psy10574

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGNWNC
ccccHHHHHHHccccHHHHHcccEEcccccHHHHHHHcHHccccccccHHHHHcccccccHHHHHHHHHcccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccEEEEEEccEEEEEEEcEEEEcccccccccEEEccccccccccccccEEEEEcccccEEEEEcccccEEEccEEEccccEEEcccccEEEEEccccccc
cHHHHHHHcHEEcccHHHHHcccccccHccHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccEEEEEccEEEEEEEccEEEEEccccccEEEEEccccccccHEEHHEEEEEEcccccEEEEEccccEEEEccEEcccccEEEEccccEEEEEccccccc
MANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTllydpnlsrlAVQGMQNLHPEVVHNIQakalfsndeeellgsikspgytlrFIGFSLLILEKKELKKVEEEMKNWAVIVDHvtgsntpeldkQTYAVLRGRAVRYLMKFrdvtlgrstadhsvdidlslegpawkvSRRQACIRMRnngdffianegkrpiyvdgrpiiasnkyklnhnSIIErfdrgnwnc
MANEIrelnlnrtndikavHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLgsikspgytLRFIGFSLLILEKKELKKVEEEMKNWAVIVDhvtgsntpeldkqtYAVLRGRAVRYLMKFrdvtlgrstadhsvdidlslegpawkvsrRQACIRMrnngdffianegkrpiyVDGRPIIasnkyklnhnsiierfdrgnwnc
MANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSllilekkelkkveeemkNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGNWNC
***********RTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFD******
*ANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNL*********************************************IGFSLLIL****************************ELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGN***
MANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGNWNC
MANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGNWNC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANEIRELNLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGNWNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
Q96EZ8462 Microspherule protein 1 O yes N/A 0.530 0.266 0.577 1e-44
Q99L90462 Microspherule protein 1 O yes N/A 0.530 0.266 0.577 1e-44
>sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 107/123 (86%)

Query: 101 EKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTAD 160
           +K+E++++E+E+  W V+VD +TG ++P+ D QT AVLRGR VRYLM+ R++TLGR+T D
Sbjct: 312 QKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKD 371

Query: 161 HSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNS 220
           + +D+DLSLEGPAWK+SR+Q  I+++NNGDFFIANEG+RPIY+DGRP++  +K++L++NS
Sbjct: 372 NQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNS 431

Query: 221 IIE 223
           ++E
Sbjct: 432 VVE 434
Modulates the transcription repressor activity of DAXX by recruiting it to the nucleolus. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. May also be an inhibitor of TERT telomerase activity.
Homo sapiens (taxid: 9606)
>sp|Q99L90|MCRS1_MOUSE Microspherule protein 1 OS=Mus musculus GN=Mcrs1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
148226953 453 microspherule protein 1 [Xenopus laevis] 0.909 0.465 0.397 3e-53
307186249 471 Microspherule protein 1 [Camponotus flor 0.525 0.259 0.672 2e-45
432859586 460 PREDICTED: microspherule protein 1-like 0.913 0.460 0.360 4e-45
322801274 471 hypothetical protein SINV_06956 [Solenop 0.525 0.259 0.663 9e-45
332029635 471 Microspherule protein 1 [Acromyrmex echi 0.525 0.259 0.672 1e-44
10445201 530 target of Jun 3 [Coturnix coturnix] 0.517 0.226 0.601 1e-44
161089085 530 target of Jun 3 [Coturnix coturnix] 0.517 0.226 0.601 2e-44
363745520 513 PREDICTED: microspherule protein 1 [Gall 0.517 0.233 0.601 2e-44
328790508 472 PREDICTED: microspherule protein 1-like 0.525 0.258 0.655 2e-44
56090160 472 microspherule protein 1 [Danio rerio] gi 0.530 0.260 0.601 3e-44
>gi|148226953|ref|NP_001080873.1| microspherule protein 1 [Xenopus laevis] gi|33417269|gb|AAH56006.1| Mcrs1-prov protein [Xenopus laevis] Back     alignment and taxonomy information
 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 163/287 (56%), Gaps = 76/287 (26%)

Query: 12  RTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAV------------------- 52
           +TND+ AVH G KFSC+FT NE  +RW+ LLYDP LS+LA                    
Sbjct: 140 QTNDLHAVHLGAKFSCRFTLNEIQERWYALLYDPVLSKLACQAIRQLHPEVIAAIQSRVL 199

Query: 53  -----------------------QGMQNLHPEVVH-NIQAKAL----------------- 71
                                  QG+ N HPEV + +  AK+L                 
Sbjct: 200 FSKAEEQLLSIVSSASQPTLDTFQGLLNKHPEVFYMSRTAKSLQVHWQLMKQYYLLEDQT 259

Query: 72  ------------FSNDEEELLGSIKSPGYTLRFIGFSLLIL---EKKELKKVEEEMKNWA 116
                       FS D E++L   K        +   L +    +K+E++++E+E+  W 
Sbjct: 260 VQPLPKGDQVLNFS-DAEDMLEDSKLRETRDEVLEHELTVADRRQKREIRQLEQELNRWQ 318

Query: 117 VIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKV 176
           V+VD +TG ++P+ D QT AVLRGR VRYLM+ R++TLGR+T D+ +D+DLSLEGPAWK+
Sbjct: 319 VLVDSITGMSSPDFDTQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKI 378

Query: 177 SRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIE 223
           SR+Q  I+++NNGDFF+ANEG+R IY+DGRP++  +K+KL+HNS++E
Sbjct: 379 SRKQGVIKLKNNGDFFLANEGRRAIYIDGRPVLPGSKWKLSHNSVVE 425

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|307186249|gb|EFN71912.1| Microspherule protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|432859586|ref|XP_004069168.1| PREDICTED: microspherule protein 1-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|322801274|gb|EFZ21961.1| hypothetical protein SINV_06956 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332029635|gb|EGI69524.1| Microspherule protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|10445201|gb|AAG16624.1| target of Jun 3 [Coturnix coturnix] Back     alignment and taxonomy information
>gi|161089085|gb|ABV21625.2| target of Jun 3 [Coturnix coturnix] Back     alignment and taxonomy information
>gi|363745520|ref|XP_001232507.2| PREDICTED: microspherule protein 1 [Gallus gallus] Back     alignment and taxonomy information
>gi|328790508|ref|XP_624688.3| PREDICTED: microspherule protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|56090160|ref|NP_998438.1| microspherule protein 1 [Danio rerio] gi|41351103|gb|AAH65654.1| Microspherule protein 1 [Danio rerio] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
UNIPROTKB|H9KYV0458 MCRS1 "Uncharacterized protein 0.469 0.237 0.642 4.2e-61
UNIPROTKB|Q96EZ8462 MCRS1 "Microspherule protein 1 0.469 0.235 0.614 1.8e-60
RGD|1311607462 Mcrs1 "microspherule protein 1 0.469 0.235 0.614 1.8e-60
UNIPROTKB|G3V9E0462 Mcrs1 "Protein Mcrs1" [Rattus 0.469 0.235 0.614 1.8e-60
UNIPROTKB|Q08E44462 MCRS1 "Uncharacterized protein 0.469 0.235 0.614 2.3e-60
MGI|MGI:1858420462 Mcrs1 "microspherule protein 1 0.469 0.235 0.614 2.3e-60
ZFIN|ZDB-GENE-040426-2434472 mcrs1 "microspherule protein 1 0.469 0.230 0.633 2.9e-60
FB|FBgn0263832578 Rcd5 "Reduction in Cnn dots 5" 0.469 0.188 0.554 3.2e-53
UNIPROTKB|E2R2M5271 MCRS1 "Uncharacterized protein 0.469 0.402 0.614 2e-45
UNIPROTKB|Q7Z372271 DKFZp686N07218 "Putative uncha 0.469 0.402 0.614 2e-45
UNIPROTKB|H9KYV0 MCRS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 424 (154.3 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 70/109 (64%), Positives = 95/109 (87%)

Query:   115 WAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAW 174
             W V+VD +TG N+P+ D QT AVLRGR VRYLM+ R++TLGR+T D+ +D+DL+LEGPAW
Sbjct:   322 WQVLVDSITGMNSPDFDSQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLALEGPAW 381

Query:   175 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIE 223
             K+SR+Q  I+++NNGDFFIANEG+RPIY+DGRP++  NK+KLN+NS++E
Sbjct:   382 KISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLGGNKWKLNNNSVVE 430
GO:0000123 "histone acetyltransferase complex" evidence=IEA
GO:0031011 "Ino80 complex" evidence=IEA
GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA
GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA
GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA
GO:0071339 "MLL1 complex" evidence=IEA
UNIPROTKB|Q96EZ8 MCRS1 "Microspherule protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311607 Mcrs1 "microspherule protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9E0 Mcrs1 "Protein Mcrs1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q08E44 MCRS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1858420 Mcrs1 "microspherule protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2434 mcrs1 "microspherule protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0263832 Rcd5 "Reduction in Cnn dots 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2M5 MCRS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z372 DKFZp686N07218 "Putative uncharacterized protein DKFZp686N07218" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99L90MCRS1_MOUSENo assigned EC number0.57720.53010.2662yesN/A
Q96EZ8MCRS1_HUMANNo assigned EC number0.57720.53010.2662yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
pfam13325199 pfam13325, MCRS_N, N-terminal region of micro-sphe 2e-34
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 6e-08
pfam0049867 pfam00498, FHA, FHA domain 8e-08
smart0024052 smart00240, FHA, Forkhead associated domain 3e-06
TIGR03354 396 TIGR03354, VI_FHA, type VI secretion system FHA do 6e-05
>gnl|CDD|205505 pfam13325, MCRS_N, N-terminal region of micro-spherule protein Back     alignment and domain information 
 Score =  121 bits (306), Expect = 2e-34
 Identities = 47/77 (61%), Positives = 64/77 (83%)

Query: 9  NLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQA 68
           + +TND++AVHRG+KFSC+FT  E  +RW+ LLYDP +SR+AV  M+NLHPE V ++Q+
Sbjct: 13 GVEQTNDLRAVHRGVKFSCRFTLQEVQERWYALLYDPVISRIAVAAMRNLHPETVASVQS 72

Query: 69 KALFSNDEEELLGSIKS 85
          KALFS +EE+LLG+IKS
Sbjct: 73 KALFSQEEEQLLGTIKS 89

This domain is found in plants and higher eukaryotes, and is the N-terminal region of micro-spherule proteins which repress the transactivation activities of Nrf1 (p45 nuclear factor-erythroid 2 (p45 NF-E2)-related factor 1). In conjunction with DIPA the full-length protein acts as a transcription repressor. The exact function of the region is not known. Length = 199
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
KOG2293|consensus547 100.0
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 100.0
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.62
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.48
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.19
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.0
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 98.99
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 98.91
COG3456 430 Predicted component of the type VI protein secreti 98.74
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 98.21
KOG1882|consensus293 97.32
KOG0245|consensus 1221 97.31
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 97.15
KOG1881|consensus 793 97.04
KOG1880|consensus 337 96.31
TIGR02500 410 type_III_yscD type III secretion apparatus protein 95.75
KOG2293|consensus 547 94.4
KOG0615|consensus 475 93.97
KOG0241|consensus 1714 93.89
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 93.06
>KOG2293|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.5e-44  Score=338.58  Aligned_cols=218  Identities=36%  Similarity=0.497  Sum_probs=200.3

Q ss_pred             hcccchHHHHhccccCccccHHHHHHhhHHhhcChHhhH-HHHHhhhcCChHHHHhhhhccCCChHHHHHhhhcC--CCC
Q psy10574         11 NRTNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSR-LAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIK--SPG   87 (232)
Q Consensus        11 ~~~~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~-~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L~~~~--s~~   87 (232)
                      ++++++..||.|++|+ +|++.||++||+.++|+|.+++ .|.++++++|||.++.++.+++++..++.+|.++.  ++.
T Consensus       221 ~~~s~~~~vr~g~k~~-~~~~~ei~~r~~~~ly~pk~~~~la~s~vrn~~pE~~~~~~~s~l~i~~~~~ll~~~~~gss~  299 (547)
T KOG2293|consen  221 EPTSVSAKVRCGVKFS-MRDLAEIQERWYALLYEPKTSKPLAESAVRNNHPERLDPEQRSALQIKHSKDLLDTVGYGSSK  299 (547)
T ss_pred             ccccccceeeeccccc-ccchhhhhhhchhhhcChhhccccchhhcccCCCCccCchhcchhhhhhhHHhhhcccCCccc
Confidence            8999999999999999 9999999999999999999999 99999999999999999999999999999999988  444


Q ss_pred             C--------------------------------------------CC----cccCchHH---------------------
Q psy10574         88 Y--------------------------------------------TL----RFIGFSLL---------------------   98 (232)
Q Consensus        88 ~--------------------------------------------t~----~~lsfsd~---------------------   98 (232)
                      +                                            ||    ..|+|+++                     
T Consensus       300 q~~~~~l~~ll~~~~d~f~~~~T~~~lq~h~~l~k~~s~~e~~~v~p~~~sd~l~~~~ae~q~~~~~~~~e~DE~Le~di  379 (547)
T KOG2293|consen  300 QAALITLQELLVRLGDTFKEKATGTALQNHWQLMKQYSCLEDQEVTPQNESDHLRRIDAEDQIQGENYNEESDEELESDI  379 (547)
T ss_pred             cchhhHHHHHhhccCcchhhhhHHHHHHhhhhhhhhcccccccccccccCCcccccccchhccchhhhcccccccccchH
Confidence            4                                            11    12455555                     


Q ss_pred             ------HHhh---HHHHHHHHHhhhhhhhhhhhcCCC-CcCCCCc-------eEEEEEccceEEEeecCeeEeCCCCCCC
Q psy10574         99 ------ILEK---KELKKVEEEMKNWAVIVDHVTGSN-TPELDKQ-------TYAVLRGRAVRYLMKFRDVTLGRSTADH  161 (232)
Q Consensus        99 ------r~~~---~~i~~le~e~~~~~~lvd~v~~~~-~~~~d~~-------~lAvL~G~~~~y~m~~~ei~IGR~s~~~  161 (232)
                            ++.+   +.++.||+++++|++|++++++.. .+.++.+       |+|||+|+..+|+|++++|++||++.+.
T Consensus       380 Eami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EVtlGRat~d~  459 (547)
T KOG2293|consen  380 EAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEVTLGRATGDL  459 (547)
T ss_pred             HHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhhhhhhcceeEEEechhhHhhhcCcceEeeccCCCc
Confidence                  2445   889999999999999999998843 6677776       9999999999999999999999999999


Q ss_pred             CcceecCCCCCCcccchhceeEEEccCCcEEEEEcCcCceEECCEEecCCCceeCCCCCeEEECCCCc
Q psy10574        162 SVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRGN  229 (232)
Q Consensus       162 ~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~~g~~~~L~~gdiIeig~~~~  229 (232)
                      +|||||+.+||+++|||+||.|++..+|.|+|+|+||+.|+|||.+|.+|+++.|+++|+|||.|..|
T Consensus       460 ~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~l~~gq~~~L~~nclveIrg~~F  527 (547)
T KOG2293|consen  460 KVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGELDRGQKVILKNNCLVEIRGLRF  527 (547)
T ss_pred             ceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCccccCCceEEeccCcEEEEccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999876

>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>KOG1882|consensus Back     alignment and domain information
>KOG0245|consensus Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG1881|consensus Back     alignment and domain information
>KOG1880|consensus Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG2293|consensus Back     alignment and domain information
>KOG0615|consensus Back     alignment and domain information
>KOG0241|consensus Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 2e-06
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 2e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-05
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 2e-05
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 4e-05
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 6e-05
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 1e-04
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 3e-04
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 4e-04
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 7e-04
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 137 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 194
              G +     L    +VT+GR      V   L  +     +SR    ++    G + I 
Sbjct: 13  RRVGMSAGWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIM 69

Query: 195 NEGKRP-IYVDGRPIIASNKYKLNHNSIIE 223
           +      ++++   +     Y ++    I+
Sbjct: 70  DNKSLNGVWLNRARLEPLRVYSIHQGDYIQ 99
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.61
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.61
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.61
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.6
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.6
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.59
3po8_A100 RV0020C protein, putative uncharacterized protein 99.58
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.58
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.57
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.56
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.56
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.56
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.55
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.54
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.54
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.54
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.52
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.51
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.5
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.49
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.48
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.46
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.46
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.45
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.44
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.43
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.37
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.37
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.23
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.09
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.07
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.06
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 98.93
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.91
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.9
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 98.68
4a0e_A123 YSCD, type III secretion protein; transport protei 98.24
1wv3_A238 Similar to DNA segregation ATPase and related prot 97.83
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 91.4
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 89.4
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 89.27
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 88.23
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 87.08
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 84.71
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 80.96
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
Probab=99.61  E-value=2e-15  Score=121.69  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             eEEEee-cCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecCCCceeCCCCC
Q psy10574        143 VRYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYKLNHNS  220 (232)
Q Consensus       143 ~~y~m~-~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~~~L~~gd  220 (232)
                      -.|.+. +..++|||+.   ..||.|........|||+||.|.++.++.|+|+|+| +|||||||+++.++.+++|++||
T Consensus        20 ~~~~l~~~~~~~IGR~~---~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~GD   96 (138)
T 2pie_A           20 GWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGD   96 (138)
T ss_dssp             CBEEECTTCCEEEESSS---SSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTTC
T ss_pred             CEEEecCCCeEEECCCC---CCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECCEEcCCCCcEECCCCC
Confidence            357776 7789999987   357777532223469999999999667899999997 59999999999999999999999


Q ss_pred             eEEECC
Q psy10574        221 IIERFD  226 (232)
Q Consensus       221 iIeig~  226 (232)
                      +|.||+
T Consensus        97 ~I~lG~  102 (138)
T 2pie_A           97 YIQLGV  102 (138)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            999998
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 232
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 2e-07
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 4e-06
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 139 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 198
                  L    +VT+GR      V   L  +     +SR    ++    G + I +   
Sbjct: 13  MSAGWLLLEDGCEVTVGRG---FGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKS 69

Query: 199 R-PIYVDGRPIIASNKYKLNHNSIIE 223
              ++++   +     Y ++    I+
Sbjct: 70  LNGVWLNRARLEPLRVYSIHQGDYIQ 95
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.65
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.6
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.58
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.58
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.56
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.53
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.53
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.52
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.5
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.35
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.29
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.26
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-16  Score=124.75  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecCCCceeCCCCC
Q psy10574        142 AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYKLNHNS  220 (232)
Q Consensus       142 ~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~~~L~~gd  220 (232)
                      .+-+...+.+++|||+.   .+|+.|........|||+||.|.++.+|.|+|.|+| +|||||||++|.+|++++|++||
T Consensus        16 ~~~~l~~~~~~tiGR~~---~~~~~l~~~~~~~~VSR~Ha~i~~~~~g~~~l~D~~S~NGt~lNg~~l~~~~~~~L~~GD   92 (127)
T d2piea1          16 GWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGD   92 (127)
T ss_dssp             CBEEECTTCCEEEESSS---SSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTTC
T ss_pred             CeEEcCCCCEEEeccCC---CccEEECCCCcccccchhheEEEECCCCeEEEEECCCcCCeEECCEEccCCceeEcCCCC
Confidence            34445578889999974   566666533334579999999999888899999997 59999999999999999999999


Q ss_pred             eEEEC
Q psy10574        221 IIERF  225 (232)
Q Consensus       221 iIeig  225 (232)
                      +|+||
T Consensus        93 ~I~iG   97 (127)
T d2piea1          93 YIQLG   97 (127)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99997
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure