Psyllid ID: psy10576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSLSQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHcccHHHHccHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHccHHHHccHHHHHHHHHHHHHHccccEEcc
Coil and Loop (DISEMBL)
mptielpdinvsQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFdrlcgedasifdekinTENLNNCLQSLIHMYDDlhaqglvcpnepeFRAYEILLKLNRGDIIWEFQqlsphlqtapEILFSLRVFSAFNNNLYSLSQ
Flexible Loop (DISEMBL)
mptielpdinvsQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSLSQ
Low Complexity Region (SEG)
MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSLSQ
Disordered region (IsUnstruct)
*****LPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLY****
Disordered Region (DISOPRED)
**T****DINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSLSQ
Disordered Region (DISEMBL)
MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSLSQ
Disordered Region (DISPRO)
******PDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYSLSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q9WUU9	1971	80 kDa MCM3-associated pr	yes	N/A	0.900	0.069	0.5	2e-39
O60318	1980	80 kDa MCM3-associated pr	yes	N/A	0.900	0.068	0.492	2e-38
Q9U3V9	1370	Protein xmas-2 OS=Drosoph	yes	N/A	0.920	0.101	0.460	3e-35
O74889	1024	SAC3 family protein 1 OS=	yes	N/A	0.688	0.101	0.392	2e-13
P46674	1301	Nuclear mRNA export prote	yes	N/A	0.721	0.083	0.336	8e-12
Q9USI4	458	SAC3 family protein 2 OS=	no	N/A	0.874	0.288	0.270	8e-07

>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2

 Score =  160 bits (406), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 94/136 (69%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
           ++  WYDF+W+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD KI
Sbjct: 708 SLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI 767

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
           N EN+  CLQSL  MY DL  +G+ C +E EF+ Y +LL LN+GDI+ E QQ  P ++ +
Sbjct: 768 NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREVQQFHPDVRNS 827

Query: 130 PEILFSLRVFSAFNNN 145
           PE+ F+++ F+A N+N
Sbjct: 828 PEVNFAVQAFAALNSN 843

May be involved in the nuclear localization pathway of MCM3.
Mus musculus (taxid: 10090)

>sp|O60318|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2

 Score =  157 bits (398), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/136 (49%), Positives = 93/136 (68%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
           ++  WYDF+W+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD KI
Sbjct: 715 SLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI 774

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
           N EN+  CLQSL  MY DL  +G+ C +E EF+ Y +LL LN+GDI+ E QQ  P ++ +
Sbjct: 775 NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNS 834

Query: 130 PEILFSLRVFSAFNNN 145
            E+ F+++ F+A N+N
Sbjct: 835 SEVKFAVQAFAALNSN 850

May be involved in the nuclear localization pathway of MCM3.

Homo sapiens (taxid: 9606)

>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 89/139 (64%)

Query: 7   PDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFD 66
           P  ++  W+ F+WDR R IRK+I QQ+LCS+    ++EQCARFHI C  RL   D S+FD
Sbjct: 283 PQSHMGDWFHFVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFD 342

Query: 67  EKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHL 126
            KIN ENL  CLQ+L +MY DL  +G+ CP E EFR Y +LL L   + +W+  QL   L
Sbjct: 343 SKINAENLTKCLQTLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADANFLWDIGQLPAEL 402

Query: 127 QTAPEILFSLRVFSAFNNN 145
           Q+ PE+  +++ + A  + 
Sbjct: 403 QSCPEVRQAIQFYLALQDT 421

Required for spermatogenesis, oogenesis and embryogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 17  FLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENL-N 75
           F+ DR R IR+D   Q    ++     E+ AR+HILC  +LC  +   F  +   E L  
Sbjct: 192 FVRDRTRSIRQDFTLQNCRDLDAVACHERIARYHILCIHQLC--EKKQFSAQQEVEQLRK 249

Query: 76  NCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQL 122
             LQSL   YDDL    + CPNEPEFR+Y I+  L   D++ + Q L
Sbjct: 250 GILQSLCEFYDDLRKVKIRCPNEPEFRSYAIITHLRDPDVVRQSQIL 296

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P46674|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 17  FLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNN 76
           FLWDR+R IR+D   Q        +  E+  R H+L    +   +   F  +   E L+ 
Sbjct: 282 FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVE-FSLQQELEQLHK 340

Query: 77  CLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHL 126
            L +L  +YDD+ + G  CPNE EFRAY +L K+         Q+L  H+
Sbjct: 341 SLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHI 390

Component of the SAC3-THP1 complex, which functions in transcription-coupled mRNA export from the nucleus to the cytoplasm. SAC3-THP1 functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket), by association with components of the nuclear mRNA export machinery (MEX67-MTR2 and SUB2) in the nucleoplasm and the nucleoporin NUP1 at the nuclear basket.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USI4|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.06 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 17  FLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNN 76
           F+ DR R +R+D   Q   S ++    E  ARFHI+    L       F  +   E L+ 
Sbjct: 157 FVRDRTRAVRQDFSVQSSFSQDSVYCHELIARFHIISLHELA--HTPNFSRQQEIEQLSK 214

Query: 77  CLQ---SLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEIL 133
            ++   +L  +YD +H +   C +E EFRAY +LL L    +  +       +   P + 
Sbjct: 215 SMEILYTLGQLYDYMHLRKEHCTHEAEFRAYMVLLSLGDPSVGLDTLSWPDFVFKKPIVK 274

Query: 134 FSLRVFSAFNNNLYSLS 150
            SL+++S    N ++++
Sbjct: 275 TSLKLYSLAQRNNHTIT 291

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
322798618	1613	hypothetical protein SINV_06677 [Solenop	1.0	0.093	0.546	3e-45
307203956	1623	Protein xmas-2 [Harpegnathos saltator]	0.920	0.085	0.553	1e-43
270006333	1350	hypothetical protein TcasGA2_TC008518 [T	0.973	0.108	0.544	3e-43
383864959	1605	PREDICTED: uncharacterized protein LOC10	0.913	0.085	0.536	7e-43
189236908	1247	PREDICTED: similar to conserved hypothet	0.973	0.117	0.544	1e-42
157124473	1384	80 kda MCM3-associated protein [Aedes ae	0.933	0.101	0.560	2e-42
340708915	1613	PREDICTED: hypothetical protein LOC10064	0.913	0.085	0.543	3e-42
345480722	1692	PREDICTED: hypothetical protein LOC10012	0.927	0.082	0.578	4e-42
350419045	1612	PREDICTED: hypothetical protein LOC10074	0.913	0.085	0.543	6e-42
307188155	1632	Protein xmas-2 [Camponotus floridanus]	0.947	0.087	0.552	4e-41

>gi|322798618|gb|EFZ20222.1| hypothetical protein SINV_06677 [Solenopsis invicta]

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 111/152 (73%), Gaps = 1/152 (0%)

Query: 1   MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGE 60
           M   E    N+++WY FLWDR RGIRKDI QQ+LC V +  +LEQCARFHI+C +RLC E
Sbjct: 420 MDLCEQEGTNLAEWYHFLWDRTRGIRKDITQQELCCVESVELLEQCARFHIVCSERLCAE 479

Query: 61  DASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQ 120
           DAS+FD+KIN+ENL  CLQ+L +MY DL  +G+ C NEPEFRAY +LL LN G+ +++ Q
Sbjct: 480 DASVFDKKINSENLTKCLQTLKYMYHDLRVKGITCENEPEFRAYVVLLNLNSGNFLYDLQ 539

Query: 121 QLSPHLQTAPEILFSLRV-FSAFNNNLYSLSQ 151
           QL   +Q +PE+ F++++ FS  +NN Y   Q
Sbjct: 540 QLPKLVQNSPEVQFAIKMYFSLDSNNYYKFFQ 571

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203956|gb|EFN82863.1| Protein xmas-2 [Harpegnathos saltator]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 107/139 (76%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
           N+++WY FLWDR RGIRKDI QQ+LC  ++  ++EQCARFHI+C ++LC EDAS+FD+KI
Sbjct: 428 NLAEWYHFLWDRTRGIRKDITQQELCCKDSVELIEQCARFHIVCSEKLCEEDASVFDKKI 487

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
           N+ENL  CLQ+L +MY DL  +G+ C NEPEFRAY +LL LN G  +++ QQL   +Q +
Sbjct: 488 NSENLTKCLQTLKYMYQDLREKGIACENEPEFRAYIVLLNLNNGSFMYDLQQLPKSVQNS 547

Query: 130 PEILFSLRVFSAFNNNLYS 148
           PEI F+ +V+ A ++N Y+
Sbjct: 548 PEIQFATKVYFALSSNNYN 566

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006333|gb|EFA02781.1| hypothetical protein TcasGA2_TC008518 [Tribolium castaneum]

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/147 (54%), Positives = 103/147 (70%)

Query: 1   MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGE 60
           M   + PD+N+++WY FLWDR RGIRKDI QQ+LC      ++EQCARFHI C  RL  E
Sbjct: 285 MGLCDTPDVNLAEWYHFLWDRTRGIRKDITQQELCCQGAVELVEQCARFHIFCSARLVAE 344

Query: 61  DASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQ 120
           D S+FD+KINTENL  CLQ+L +MY DL  +G  C NE EFRAY ILL LN G+ +WE Q
Sbjct: 345 DPSVFDQKINTENLTKCLQTLKYMYHDLALKGEDCTNEAEFRAYIILLNLNDGNFMWEVQ 404

Query: 121 QLSPHLQTAPEILFSLRVFSAFNNNLY 147
           QL  H+Q + ++ F+L V+S+ +   Y
Sbjct: 405 QLKKHIQQSQQVRFALEVYSSLDKQNY 431

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864959|ref|XP_003707945.1| PREDICTED: uncharacterized protein LOC100882718 [Megachile rotundata]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 106/138 (76%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
           N+++WY FLWDR RGIRKDI QQ+LC  ++  ++EQCARFHI+C +RLC E+AS+FD++I
Sbjct: 429 NLAEWYHFLWDRTRGIRKDITQQELCCTDSVELVEQCARFHIVCSERLCAEEASVFDKRI 488

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
           N++NL  CLQSL +MY DL  +G+ C NEPEFR Y ILL LN G+ +W+ Q+L  ++Q +
Sbjct: 489 NSDNLTKCLQSLKYMYHDLRVKGISCKNEPEFRTYIILLNLNNGNFMWDLQRLPRNIQKS 548

Query: 130 PEILFSLRVFSAFNNNLY 147
           PE+ F+L ++ A  ++ Y
Sbjct: 549 PEVHFALEIYFALESSNY 566

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236908|ref|XP_968818.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 103/147 (70%)

Query: 1   MPTIELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGE 60
           M   + PD+N+++WY FLWDR RGIRKDI QQ+LC      ++EQCARFHI C  RL  E
Sbjct: 285 MGLCDTPDVNLAEWYHFLWDRTRGIRKDITQQELCCQGAVELVEQCARFHIFCSARLVAE 344

Query: 61  DASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQ 120
           D S+FD+KINTENL  CLQ+L +MY DL  +G  C NE EFRAY ILL LN G+ +WE Q
Sbjct: 345 DPSVFDQKINTENLTKCLQTLKYMYHDLALKGEDCTNEAEFRAYIILLNLNDGNFMWEVQ 404

Query: 121 QLSPHLQTAPEILFSLRVFSAFNNNLY 147
           QL  H+Q + ++ F+L V+S+ +   Y
Sbjct: 405 QLKKHIQQSQQVRFALEVYSSLDKQNY 431

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124473|ref|XP_001660477.1| 80 kda MCM3-associated protein [Aedes aegypti] gi|108873988|gb|EAT38213.1| AAEL009871-PA [Aedes aegypti]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 103/141 (73%)

Query: 8   DINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDE 67
           D+N+S W+ F+WDR RGIRKDI QQ+LCSV    ++EQCARFHI C  RL  ED S+FD+
Sbjct: 183 DVNLSDWFHFVWDRTRGIRKDITQQELCSVRAVRLVEQCARFHIHCAARLVAEDPSVFDQ 242

Query: 68  KINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQ 127
           KINTEN+  CLQSL +MY DL  +G+ CPNE EFRAY +LL LN G+ +WE +QL+  + 
Sbjct: 243 KINTENMTKCLQSLKYMYHDLGLKGIRCPNEAEFRAYVVLLNLNDGNFLWEVKQLAGDIM 302

Query: 128 TAPEILFSLRVFSAFNNNLYS 148
            + EI F+L+V+ A   N Y+
Sbjct: 303 HSKEIRFALQVYFALEGNNYA 323

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708915|ref|XP_003393062.1| PREDICTED: hypothetical protein LOC100647953 [Bombus terrestris]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 103/138 (74%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
           N+ +WY FLWDR RGIRKDI QQ+LC +++  ++EQCARFHI+C +RLC E  S+FD+KI
Sbjct: 433 NLGEWYHFLWDRTRGIRKDITQQELCCIDSVELVEQCARFHIVCSERLCAEQPSVFDKKI 492

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
           N++NL  CLQSL +MY DL  + + C NEPEFRAY ILL LN G+ +W+ Q+L  ++Q +
Sbjct: 493 NSDNLTKCLQSLKYMYHDLRVKEITCKNEPEFRAYIILLNLNNGNFMWDLQRLPNNIQKS 552

Query: 130 PEILFSLRVFSAFNNNLY 147
            E+ F+L  +SA  +N Y
Sbjct: 553 SEVQFALDTYSALESNNY 570

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480722|ref|XP_001605782.2| PREDICTED: hypothetical protein LOC100122178 [Nasonia vitripennis]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 101/140 (72%)

Query: 8   DINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDE 67
           D N+++WY FLWDR+R IRKDI QQ+LC V+T  ++EQCARFHIL  +RLC E+AS+FD 
Sbjct: 508 DANLTEWYHFLWDRMRSIRKDITQQELCCVDTVELVEQCARFHILSSERLCAEEASVFDP 567

Query: 68  KINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQ 127
           KIN+ENL  CLQSL +MY DL   G+ C NEPEFRAY ILL LN G  I E + L P +Q
Sbjct: 568 KINSENLTKCLQSLKYMYYDLRENGISCKNEPEFRAYIILLNLNNGTFISELRTLPPEVQ 627

Query: 128 TAPEILFSLRVFSAFNNNLY 147
            + E+ F+L V SA   + Y
Sbjct: 628 HSTEVKFALEVHSAIAMDNY 647

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419045|ref|XP_003492052.1| PREDICTED: hypothetical protein LOC100740547 [Bombus impatiens]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 103/138 (74%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
           N+ +WY FLWDR RGIRKDI QQ+LC +++  ++EQCARFHI+C +RLC E  S+FD+KI
Sbjct: 433 NLGEWYHFLWDRTRGIRKDITQQELCCIDSVELVEQCARFHIVCSERLCAEQPSVFDKKI 492

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
           N++NL  CLQSL +MY DL  + + C NEPEFRAY ILL LN G+ +W+ Q+L  ++Q +
Sbjct: 493 NSDNLTKCLQSLKYMYHDLRVKEISCKNEPEFRAYIILLNLNNGNFMWDLQRLPNNIQKS 552

Query: 130 PEILFSLRVFSAFNNNLY 147
            E+ F+L  +SA  +N Y
Sbjct: 553 SEVQFALDTYSALESNNY 570

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188155|gb|EFN72987.1| Protein xmas-2 [Camponotus floridanus]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 109/143 (76%)

Query: 5   ELPDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASI 64
           E  + N+++WY FLWDR RGIRKDI QQ+LC + +  ++EQCARFHI+C +RLC EDAS+
Sbjct: 430 EQENTNLAEWYHFLWDRTRGIRKDITQQELCCIESVELIEQCARFHIVCSERLCAEDASV 489

Query: 65  FDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSP 124
           FD+KINTENL  CLQ+L +MYDDL  +G+ C NE EFRAY +LL LN G+ +++ QQL  
Sbjct: 490 FDKKINTENLTKCLQTLKYMYDDLRVKGITCENESEFRAYIVLLNLNNGNFLYDLQQLPK 549

Query: 125 HLQTAPEILFSLRVFSAFNNNLY 147
            +Q +PEI F++ ++ A ++N Y
Sbjct: 550 SVQNSPEIQFAINIYFALDSNNY 572

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
UNIPROTKB|F1NVG3	1659	MCM3AP "Uncharacterized protei	0.900	0.081	0.514	1.3e-35
ZFIN|ZDB-GENE-040715-1	2118	mcm3ap "MCM3 minichromosome ma	0.900	0.064	0.514	6.2e-35
UNIPROTKB|E1BJE7	1979	MCM3AP "Uncharacterized protei	0.874	0.066	0.522	1.2e-34
MGI|MGI:1930089	1971	Mcm3ap "minichromosome mainten	0.900	0.069	0.5	1.9e-34
RGD|1306834	1908	Mcm3ap "minichromosome mainten	0.900	0.071	0.5	2.3e-34
UNIPROTKB|O60318	1980	MCM3AP "80 kDa MCM3-associated	0.900	0.068	0.492	1.4e-33
UNIPROTKB|I3LCF4	1990	MCM3AP "Uncharacterized protei	0.900	0.068	0.492	1.8e-33
FB|FBgn0028974	1370	xmas-2 "xmas-2" [Drosophila me	0.913	0.100	0.463	6.6e-32
WB|WBGene00017642	1116	F20D12.2 [Caenorhabditis elega	0.887	0.120	0.358	1.2e-22
TAIR|locus:2082485	1697	SAC3B "AT3G06290" [Arabidopsis	0.841	0.074	0.35	1.1e-15

UNIPROTKB|F1NVG3 MCM3AP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 399 (145.5 bits), Expect = 1.3e-35, P = 1.3e-35
 Identities = 70/136 (51%), Positives = 94/136 (69%)

Query:    10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
             N  +WYDF+W+R RGIRKDI QQ LC+    +++E+C RFHI C   LC E  S FD KI
Sbjct:   397 NYREWYDFVWNRTRGIRKDITQQHLCNPLMVSLIEKCTRFHIHCAHHLCEEPMSSFDAKI 456

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             N EN+  CLQSL  MY DL  +G+ C +E EFR Y +LL LN+GDI+ E QQ  P ++ +
Sbjct:   457 NNENMTKCLQSLKEMYQDLANKGIYCKSEAEFRGYNVLLNLNKGDILREVQQFHPEVRNS 516

Query:   130 PEILFSLRVFSAFNNN 145
             PE+ F+++ F+A N+N
Sbjct:   517 PEVRFAVQAFAALNSN 532

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-040715-1 mcm3ap "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 70/136 (51%), Positives = 91/136 (66%)

Query:    10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
             N   WYDF+W+R RGIRKDI QQ LC   T +++E+C RFHI C   LC E    FD KI
Sbjct:   767 NCRDWYDFVWNRTRGIRKDITQQHLCDPETVSLIEKCTRFHIHCAHHLCQEPMMSFDAKI 826

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             N EN+  CLQSL  MY DL  + + CP E EFR Y +L+KLN GDI+ E QQ    ++ +
Sbjct:   827 NNENMTKCLQSLKEMYQDLATKEVYCPKEAEFRQYNVLVKLNDGDILREVQQFRKEIRES 886

Query:   130 PEILFSLRVFSAFNNN 145
             PE+ F+++VF+A N+N
Sbjct:   887 PEVTFAVQVFAALNSN 902

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BJE7 MCM3AP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 391 (142.7 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 69/132 (52%), Positives = 92/132 (69%)

Query:    14 WYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTEN 73
             WYDFLW+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD KIN EN
Sbjct:   717 WYDFLWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKINNEN 776

Query:    74 LNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEIL 133
             +  CLQSL  MY DL  +G+ C +E EF+ Y +LL LN+GDI+ E QQ  P ++ +PE+ 
Sbjct:   777 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREVQQFHPAVRNSPEVK 836

Query:   134 FSLRVFSAFNNN 145
             F+++ F+A N+N
Sbjct:   837 FAVQAFAALNSN 848

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1930089 Mcm3ap "minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Mus musculus (taxid:10090)]

 Score = 389 (142.0 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 68/136 (50%), Positives = 94/136 (69%)

Query:    10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
             ++  WYDF+W+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD KI
Sbjct:   708 SLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI 767

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             N EN+  CLQSL  MY DL  +G+ C +E EF+ Y +LL LN+GDI+ E QQ  P ++ +
Sbjct:   768 NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREVQQFHPDVRNS 827

Query:   130 PEILFSLRVFSAFNNN 145
             PE+ F+++ F+A N+N
Sbjct:   828 PEVNFAVQAFAALNSN 843

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

RGD|1306834 Mcm3ap "minichromosome maintenance complex component 3 associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 388 (141.6 bits), Expect = 2.3e-34, P = 2.3e-34
 Identities = 68/136 (50%), Positives = 94/136 (69%)

Query:    10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
             ++  WYDF+W+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD KI
Sbjct:   713 SLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI 772

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             N EN+  CLQSL  MY DL  +G+ C +E EF+ Y +LL LN+GDI+ E QQ  P ++ +
Sbjct:   773 NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREVQQFHPDVRNS 832

Query:   130 PEILFSLRVFSAFNNN 145
             PE+ F+++ F+A N+N
Sbjct:   833 PEVDFAVQAFAALNSN 848

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

UNIPROTKB|O60318 MCM3AP "80 kDa MCM3-associated protein" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 67/136 (49%), Positives = 93/136 (68%)

Query:    10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
             ++  WYDF+W+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD KI
Sbjct:   715 SLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI 774

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             N EN+  CLQSL  MY DL  +G+ C +E EF+ Y +LL LN+GDI+ E QQ  P ++ +
Sbjct:   775 NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNS 834

Query:   130 PEILFSLRVFSAFNNN 145
              E+ F+++ F+A N+N
Sbjct:   835 SEVKFAVQAFAALNSN 850

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006606 "protein import into nucleus" evidence=TAS

UNIPROTKB|I3LCF4 MCM3AP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 380 (138.8 bits), Expect = 1.8e-33, P = 1.8e-33
 Identities = 67/136 (49%), Positives = 92/136 (67%)

Query:    10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
             ++  WYDFLW+R RGIRKDI QQ LC   T +++E+C RFHI C   +C E  S FD  I
Sbjct:   718 SLRDWYDFLWNRTRGIRKDITQQHLCDPVTVSLIEKCTRFHIHCAHFMCEEPMSSFDANI 777

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             N+EN+  CLQSL  MY DL  +G+ C  E EF+ Y +LL LN+GDI+ E QQ  P ++ +
Sbjct:   778 NSENMTRCLQSLKEMYQDLRVKGVFCAGEAEFQGYNVLLHLNKGDILREVQQFHPAVRNS 837

Query:   130 PEILFSLRVFSAFNNN 145
              E+ F+++ F+A N+N
Sbjct:   838 SEVKFAVQAFAALNSN 853

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0028974 xmas-2 "xmas-2" [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 6.6e-32, P = 6.6e-32
 Identities = 64/138 (46%), Positives = 89/138 (64%)

Query:     7 PDINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFD 66
             P  ++  W+ F+WDR R IRK+I QQ+LCS+    ++EQCARFHI C  RL   D S+FD
Sbjct:   283 PQSHMGDWFHFVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFD 342

Query:    67 EKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHL 126
              KIN ENL  CLQ+L +MY DL  +G+ CP E EFR Y +LL L   + +W+  QL   L
Sbjct:   343 SKINAENLTKCLQTLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADANFLWDIGQLPAEL 402

Query:   127 QTAPEILFSLRVFSAFNN 144
             Q+ PE+  +++ + A  +
Sbjct:   403 QSCPEVRQAIQFYLALQD 420

GO:0009790 "embryo development" evidence=NAS

GO:0003729 "mRNA binding" evidence=NAS

GO:0007283 "spermatogenesis" evidence=NAS

GO:0048477 "oogenesis" evidence=NAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005643 "nuclear pore" evidence=IDA

WB|WBGene00017642 F20D12.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 275 (101.9 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 48/134 (35%), Positives = 80/134 (59%)

Query:    14 WYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTEN 73
             WY+FLW+R R +RK++ Q  L      N++E+C R HIL    LC      FD  +N E 
Sbjct:   376 WYNFLWNRTRALRKEVTQLSLSDTLALNLVERCTRLHILFGYVLCDLGVEQFDPAMNNET 435

Query:    74 LNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEIL 133
             L  CLQ+L H+Y+D   +G+ C NEPEFR+Y+++L +N  +++ +       ++ +  + 
Sbjct:   436 LGKCLQTLRHLYEDFEKRGISCENEPEFRSYDVMLHMNDTNVLAQVLAYRSEVRQSQPVR 495

Query:   134 FSLRVFSAFNNNLY 147
              +L++ +AF +N Y
Sbjct:   496 LALQLATAFRDNNY 509

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

TAIR|locus:2082485 SAC3B "AT3G06290" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 49/140 (35%), Positives = 71/140 (50%)

Query:    15 YDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLC----GEDASI-FDEKI 69
             Y+FLWDR+R IR D+  Q + +     +LEQ  R HI+    LC    GE  S  FD  +
Sbjct:   565 YNFLWDRMRAIRMDLRMQHIFNQEAITLLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHL 624

Query:    70 NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNR--------GDIIWEFQQ 121
             N E +N     L  MYDD   +G+  P E EFR Y  LLKL++         ++  +   
Sbjct:   625 NIEQMNKTSVELFQMYDDHRKKGITVPTEKEFRGYYALLKLDKHPGYKVEPSELSLDLAN 684

Query:   122 LSPHLQTAPEILFSLRVFSA 141
             ++P ++   E+LF+  V  A
Sbjct:   685 MTPEIRQTSEVLFARNVARA 704

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0034399 "nuclear periphery" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
COG5079	646	COG5079, SAC3, Nuclear protein export factor [Intr	8e-23
pfam03399	155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	3e-14

>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

 Score = 93.1 bits (231), Expect = 8e-23
 Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 15  YDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENL 74
           + F+ DR R +R+D   Q     +     E+ ARFHIL    L   D   F ++   E L
Sbjct: 157 HRFVRDRTRAVRQDFTIQNEKGKDAVECHERIARFHILFLHLLH--DHPHFSKQQELEQL 214

Query: 75  NNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILF 134
              L SLI +YDD  A    CPNE EFRAY IL  L     +   Q     +     +  
Sbjct: 215 KKSLASLIELYDDGRAGKKECPNEAEFRAYAILASLGDPRYVAGIQGWPGGIFCDLPVQI 274

Query: 135 SLRVFSAFNNNLYSL 149
           +L++     +N + L
Sbjct: 275 ALKLMQLAQSNNFRL 289

Length = 646

>gnl|CDD|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 21/110 (19%)

Query: 42  ILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEF 101
           +LE  AR  +               EK + E  N CL  L  +YDDL       PNE EF
Sbjct: 15  VLEIGARIAL---------------EKGDLEQFNQCLSQLKELYDDL---LGKSPNEAEF 56

Query: 102 RAYEILLKL---NRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFNNNLYS 148
            AY +L  L      D   E + L   ++  P I F+L +  A     Y 
Sbjct: 57  IAYYLLYLLSNNPISDFHTELELLPDEIRNDPYIQFALELEQALMEGNYH 106

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG1860|consensus	927		100.0
COG5079	646	SAC3 Nuclear protein export factor [Intracellular	100.0
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
KOG1861|consensus	540		99.96
KOG3151|consensus	260		92.64
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	88.97

>KOG1860|consensus

Probab=100.00  E-value=1.2e-43  Score=317.37  Aligned_cols=147  Identities=38%  Similarity=0.692  Sum_probs=141.7

Q ss_pred             cccCCC-ChhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHH
Q psy10576          4 IELPDI-NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLI   82 (151)
Q Consensus         4 ~~~~~~-~~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~   82 (151)
                      ++.... ++.++|+|||||+||||||+|+||+.+..||.++|+|+||||++.|+||++| +.||+++|++||++|+.+|.
T Consensus       180 v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~~Av~llE~i~RfhI~~~h~Lce~~-~~Fda~~nlEQL~K~l~sL~  258 (927)
T KOG1860|consen  180 VLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQEAVELLERIARFHILFRHRLCEEP-EQFDAQQNLEQLQKCLQSLG  258 (927)
T ss_pred             hhccccccHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccCc-ccCChhHHHHHHHHHHHHHH
Confidence            344444 8999999999999999999999999999999999999999999999999998 79999999999999999999


Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576         83 HMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLSQ  151 (151)
Q Consensus        83 ~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk  151 (151)
                      ++|+|+++.|++||||+||+||++|++|+++++...++.||+++++++.|++|+.++.|++ |||++|||
T Consensus       259 elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~~~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r  328 (927)
T KOG1860|consen  259 ELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQVVRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFR  328 (927)
T ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHhcCCchHHHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeee
Confidence            9999999999999999999999999999999999999999999999999999999999999 99999985

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

Probab=100.00  E-value=2.8e-36  Score=257.04  Aligned_cols=138  Identities=30%  Similarity=0.429  Sum_probs=132.9

Q ss_pred             CCChhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHH
Q psy10576          8 DINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDD   87 (151)
Q Consensus         8 ~~~~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~   87 (151)
                      +.++.+.|.|+|||+||||||+|+||..+.+||+|+|++|||||++.|.|++.|  .|+.++++|||.+.|.+|.++|++
T Consensus       150 ~d~l~e~~~Fv~drtRavrqDftiQN~~g~dAV~c~EriaRfhIl~lh~L~~~p--~Fs~qqeleQL~ksL~sL~elYdd  227 (646)
T COG5079         150 GDQLIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHP--HFSKQQELEQLKKSLASLIELYDD  227 (646)
T ss_pred             CcchHHHHHHHHhhhHHHHhhceeecccCchHHHHHHHHHHHHHHHHHHHhcCc--cccHHhHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999997  899999999999999999999999


Q ss_pred             HhhCCCCCCCHHHHHHHHHHHhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcc
Q psy10576         88 LHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLY  147 (151)
Q Consensus        88 ~~~~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~  147 (151)
                      .++.+..||||+||+||.||.+|+||+....++.||.+++..+.|+.|+.+.+-.+ |||.
T Consensus       228 ~r~~~~~cpneaEFraYaiL~slgDp~yv~~iq~wp~~if~d~~vq~alkl~~laq~nn~r  288 (646)
T COG5079         228 GRAGKKECPNEAEFRAYAILASLGDPRYVAGIQGWPGGIFCDLPVQIALKLMQLAQSNNFR  288 (646)
T ss_pred             HHhhcCCCCCHHHHHHHHHHHHhCCchhhhccccCCccccccchHHHHHHHHHHhhccCee
Confidence            99988999999999999999999999999999999999999999999999999888 8764

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=100.00  E-value=4.2e-36  Score=231.94  Aligned_cols=126  Identities=34%  Similarity=0.554  Sum_probs=110.8

Q ss_pred             ChhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHh
Q psy10576         10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLH   89 (151)
Q Consensus        10 ~~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~   89 (151)
                      ++.++|+|||||+||||||+++||+.+++++.|||.+|||+|.+               .|.+|+++|+++|+++|++.+
T Consensus        26 ~~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~---------------~d~~qf~~c~~~L~~lY~~~~   90 (204)
T PF03399_consen   26 PFKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES---------------GDLEQFNQCLSQLKELYDDLR   90 (204)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc---------------CCHHHHHHHHHHHHHHHHhhc
Confidence            67789999999999999999999999999999999999999998               469999999999999999974


Q ss_pred             hCCCCCCCHHHHHHHHHHHhC-CC--hhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576         90 AQGLVCPNEPEFRAYEILLKL-NR--GDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLSQ  151 (151)
Q Consensus        90 ~~g~~~~ne~EF~aY~iL~~l-~~--~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk  151 (151)
                       .+.+++|++||.||+||+++ ++  +++...+..+|++++++|.|++|++|.+|+. |||++||+
T Consensus        91 -~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~  155 (204)
T PF03399_consen   91 -DLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFR  155 (204)
T ss_dssp             -HT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHH
T ss_pred             -cCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHH
Confidence             46678999999999999999 45  5888888899999999999999999999999 99999985

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>KOG1861|consensus

Probab=99.96  E-value=1e-29  Score=215.30  Aligned_cols=119  Identities=26%  Similarity=0.383  Sum_probs=109.3

Q ss_pred             hhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy10576         13 QWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQG   92 (151)
Q Consensus        13 ~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g   92 (151)
                      .-|.|++||++|||||||||+|.+++||+|||++||+.+..               -|.++++||+++|+.+|.    .|
T Consensus       321 ~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEk---------------GD~~EfNQCQtQLk~LY~----eg  381 (540)
T KOG1861|consen  321 ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEK---------------GDLEEFNQCQTQLKALYS----EG  381 (540)
T ss_pred             ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhc---------------CCHHHHHHHHHHHHHHHc----cC
Confidence            57999999999999999999999999999999999999854               478999999999999996    56


Q ss_pred             CCCCCHHHHHHHHHHHhCC---ChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576         93 LVCPNEPEFRAYEILLKLN---RGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLSQ  151 (151)
Q Consensus        93 ~~~~ne~EF~aY~iL~~l~---~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk  151 (151)
                      +++. -.||.||+|||.+-   .++++..+..+.++++++|.|.+||+|+.|+. |||++||+
T Consensus       382 ipg~-~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~hAL~vR~A~~~GNY~kFFr  443 (540)
T KOG1861|consen  382 IPGA-YLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVAHALEVRSAVTLGNYHKFFR  443 (540)
T ss_pred             CCCc-hhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHHHHHHHHHHHHhccHHHHHH
Confidence            6655 99999999999973   46888888899999999999999999999999 99999996

>KOG3151|consensus

Probab=92.64  E-value=0.5  Score=38.11  Aligned_cols=97  Identities=15%  Similarity=0.201  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhCCCh---hH
Q psy10576         39 TANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRG---DI  115 (151)
Q Consensus        39 ~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~---~~  115 (151)
                      |=+|||..|=..|..               -|.+.|..=+.+|+-.|-|..+.=..++++.-+.+..+|+.+...   ++
T Consensus        55 aR~ilEi~vl~SI~t---------------~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNRiaeF  119 (260)
T KOG3151|consen   55 ARDILEIGVLLSILT---------------KDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNRIAEF  119 (260)
T ss_pred             HHHHHHHHHHHHHHh---------------ccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhccHHHH
Confidence            457899888666654               255677888889999998877643457888999999999988643   56


Q ss_pred             HHHHHccChHhhcC-HhHHHHHHHHHHHh-cCccccc
Q psy10576        116 IWEFQQLSPHLQTA-PEILFSLRVFSAFN-NNLYSLS  150 (151)
Q Consensus       116 l~~l~~l~~~~~~~-~~v~~Al~i~~a~~-~Ny~rfF  150 (151)
                      -..+..+|.++..+ |.|+.++++=..++ |-|-++|
T Consensus       120 HteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~  156 (260)
T KOG3151|consen  120 HTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVL  156 (260)
T ss_pred             HHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHH
Confidence            66788899998877 99999999999999 9887664

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=88.97  E-value=0.81  Score=33.31  Aligned_cols=53  Identities=21%  Similarity=0.221  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhCC---ChhHHHHHHccChHhhcC-HhHHHHHHHHHHHh-cCccccc
Q psy10576         98 EPEFRAYEILLKLN---RGDIIWEFQQLSPHLQTA-PEILFSLRVFSAFN-NNLYSLS  150 (151)
Q Consensus        98 e~EF~aY~iL~~l~---~~~~l~~l~~l~~~~~~~-~~v~~Al~i~~a~~-~Ny~rfF  150 (151)
                      .+++.+-.++..|-   -.++-..+..+|+++.++ |.++....+..++. ++|..|+
T Consensus         3 ~~~~~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~   60 (143)
T PF10075_consen    3 NPEIYALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFW   60 (143)
T ss_dssp             -HHHHHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHH
T ss_pred             chhHHHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence            56677766665542   246665666899999985 99999999999999 9999886

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
3t5v_A	316	Sac3:thp1:sem1 Complex Length = 316		1e-12

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 17  FLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNN 76
           FLWDR+R IR+D   Q        +  E+  R H+L    +   +   F  +   E L+ 
Sbjct: 35  FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVE-FSLQQELEQLHK 93
Query: 77  CLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHL 126
            L +L  +YDD+ + G  CPNE EFRAY +L K+         Q+L  H+
Sbjct: 94  SLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHI 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	4e-39

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316

 Score =  133 bits (335), Expect = 4e-39
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 10  NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKI 69
            + +   FLWDR+R IR+D   Q        +  E+  R H+L    +   +   F  + 
Sbjct: 28  TLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVE-FSLQQ 86

Query: 70  NTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTA 129
             E L+  L +L  +YDD+ + G  CPNE EFRAY +L K+         Q+L  H+   
Sbjct: 87  ELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQD 146

Query: 130 PEILFSLRVFSAFNNNLY 147
             +  +L      +N+ Y
Sbjct: 147 KLVQMALCFRRVISNSAY 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.71
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	99.65
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	93.14

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-46  Score=309.83  Aligned_cols=140  Identities=29%  Similarity=0.469  Sum_probs=134.2

Q ss_pred             hhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhh
Q psy10576         11 VSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHA   90 (151)
Q Consensus        11 ~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~   90 (151)
                      +.++|+||||||||||||+|+|++.+++||+|||+||||||+|.|+||+.+. +||+++|.+|+++||++|+++|++.++
T Consensus        29 ~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~-~f~~~~~~eQl~~~L~sL~~lY~d~~~  107 (316)
T 3t5v_A           29 LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV-EFSLQQELEQLHKSLITLSEIYDDVRS  107 (316)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhCCC-ccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999999999999999999999999999999998764 899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh----------------cCcccccC
Q psy10576         91 QGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN----------------NNLYSLSQ  151 (151)
Q Consensus        91 ~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~----------------~Ny~rfFk  151 (151)
                      .|..+|||+||+||+||++++++++...+..||++++++|.||+|+++.+|+.                |||+||||
T Consensus       108 ~~~~~~ne~EF~aY~lL~~l~~~~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFr  184 (316)
T 3t5v_A          108 SGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQ  184 (316)
T ss_dssp             TTCCCTTHHHHHHHHHHHSTTCTHHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHhccchHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence            89899999999999999999999999999999999999999999999999985                68999996

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.71  E-value=2.4e-17  Score=129.55  Aligned_cols=121  Identities=12%  Similarity=0.174  Sum_probs=101.6

Q ss_pred             hhhHHHHhhhhhhhhhhhhhccCC--------cchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHH
Q psy10576         13 QWYDFLWDRLRGIRKDIVQQQLCS--------VNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHM   84 (151)
Q Consensus        13 ~~y~Fi~DR~RaIRqDl~iQ~~~~--------~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~l   84 (151)
                      .-|+.+.+.+..|++||+.|++..        ..|.+|||..+|..|..               -|.+++++|+++|+.+
T Consensus        21 ~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~---------------~D~~~F~~~~~qLk~~   85 (229)
T 4b0z_A           21 KDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQT---------------CDIESFARYASQVIPF   85 (229)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHHH
Confidence            357899999999999999999842        35789999999999864               4789999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHhCC--C-hhHHHHHHccChH--hhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576         85 YDDLHAQGLVCPNEPEFRAYEILLKLN--R-GDIIWEFQQLSPH--LQTAPEILFSLRVFSAFN-NNLYSLSQ  151 (151)
Q Consensus        85 Y~~~~~~g~~~~ne~EF~aY~iL~~l~--~-~~~l~~l~~l~~~--~~~~~~v~~Al~i~~a~~-~Ny~rfFk  151 (151)
                      |.+.   ...++++.||.||+||+.+.  + +++...+..+|++  +.++|.|++|++|.+|++ |||.+||+
T Consensus        86 Y~~~---~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~  155 (229)
T 4b0z_A           86 YHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVAS  155 (229)
T ss_dssp             HSSC---CCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcc---CCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9852   23578999999999998874  3 3555566667654  689999999999999999 99999985

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.4e-17  Score=131.98  Aligned_cols=124  Identities=16%  Similarity=0.119  Sum_probs=81.4

Q ss_pred             hhhHHHHhhhhhhhhhhhhhccCCc--------------chHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHH
Q psy10576         13 QWYDFLWDRLRGIRKDIVQQQLCSV--------------NTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCL   78 (151)
Q Consensus        13 ~~y~Fi~DR~RaIRqDl~iQ~~~~~--------------~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl   78 (151)
                      .-|+-+.+.+..++++++.|++-.+              .|.+|||..||+.|..               .|.+++++|+
T Consensus        18 ~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~---------------~D~~~F~~~~   82 (274)
T 4b4t_T           18 GDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQT---------------FNFDSFENYF   82 (274)
T ss_dssp             -------------------------------------------CHHHHHHCCSSC---------------SSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHH
Confidence            3567888999999999999987421              2457999999998743               4789999999


Q ss_pred             HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhCC---ChhHHHHHHccC---hHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576         79 QSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLN---RGDIIWEFQQLS---PHLQTAPEILFSLRVFSAFN-NNLYSLSQ  151 (151)
Q Consensus        79 ~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~---~~~~l~~l~~l~---~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk  151 (151)
                      ++|+.+|.+.+..+..++|+.||.||+||+.+.   .+++-..+..+|   +++.++|.|++|+++.+|+. |||.+||+
T Consensus        83 ~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~  162 (274)
T 4b4t_T           83 NQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWD  162 (274)
T ss_dssp             HHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred             HHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999998765555789999999999999874   356666677777   46788999999999999999 99999985

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=93.14  E-value=0.55  Score=36.18  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=67.7

Q ss_pred             hhccC--CcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy10576         31 QQQLC--SVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILL  108 (151)
Q Consensus        31 iQ~~~--~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~  108 (151)
                      ++++.  |++.+..+|+.+.-.+.-       +  .||...|+        .|+.+|.-.     +.....+..+..+|.
T Consensus        15 l~~~~rYnp~~l~~le~Yv~qq~~~-------~--~YD~~anl--------alLklYq~~-----p~~~~~~ii~~iLlk   72 (226)
T 1rz4_A           15 LKGIDRYNPENLATLERYVETQAKE-------N--AYDLEANL--------AVLKLYQFN-----PAFFQTTVTAQILLK   72 (226)
T ss_dssp             HHSGGGGCGGGHHHHHHHHHHHHHH-------T--CCCHHHHH--------HHHHHHHHS-----GGGCCHHHHHHHHHH
T ss_pred             HhccccCCHHHHHHHHHHHHHHHhc-------c--cccHHHHH--------HHHHHHhcC-----CcccchhHHHHHHHH
Confidence            34444  788999999887665421       1  34422222        244556531     234567888888865


Q ss_pred             hC---CChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCccccc
Q psy10576        109 KL---NRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLS  150 (151)
Q Consensus       109 ~l---~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfF  150 (151)
                      .|   ..+++...+.-+|+.+.++|.++..+.+-..+. +||.+||
T Consensus        73 ~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW  118 (226)
T 1rz4_A           73 ALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFW  118 (226)
T ss_dssp             HHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHH
Confidence            54   456777666668999999999999999999999 9999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00