Psyllid ID: psy10626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MRKDLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSLNNRQSVNNSKSSTLPPYVNPPYVKENSTRRPSESSSESEPTSVQRKDKRPNVLSSLFRKKKATHLII
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccccccEEEEEEEEEEEEEcccccccccccccEEEEEEEccEEEEEEcccHHHHcccccccEEEcccEEEEcccccccccEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccHcHccccccccccccccccccccccccccccccccccccEEccEEEEcEcccccccccccccccEEEEEEcccEEEEEEccccHHHcccccccEEccccEEEEcccccccccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccEEEcEEEccccccccccccccccccccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MRKDLKRAESMKadltkkpkrtpsfttrrRTQSFRKLQkleqldqlppveiQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLcffkdqddfvaskaatspIIIFKARCEkagdytkrkhVFRLYctdgseflflapsetlMEDWVNKISfhaqlppslqllsyddsqkvsqytgttiqekkktsifeeevgpggyinsdgysnlrnnhtsyeelpsphseppplpqtappqkhispnntpqrnpwpsdmnsyghgtiyqnigppqhigppptslnnrqsvnnsksstlppyvnppyvkenstrrpsessseseptsvqrkdkrpnvlSSLFRKkkathlii
Flexible Loop (DISEMBL)
mrkdlkraesmkadltkkpkrtpsfttrrrtqsfrklqkleqldqlppvEIQGVLerkhelqsggkkaavrSWKSLYTVLCGQLLCFFKDQDDFVAskaatspiiifkarcekagdytkRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTgttiqekkktsifeeevgpggYINSDGYSNLRNNHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSLNNRQSVNnsksstlppyvnppyvkenstrrpsessseseptsvqrkdkrpnvlsslfrkkkathlii
Low Complexity Region (SEG)
MRKDLKRAESMKADLtkkpkrtpsfttrrrtqsfrkLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYeelpsphseppplpqtappQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSLNNRQSVNNSKSSTLPPYVNPPYVKENstrrpsessseseptsVQRKDKRPNVLSSLFRKKKATHLII
Disordered region (IsUnstruct)
*******************************************************************AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSY**********************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***************************************************QGVLERKHELQ*****AA*RSWKSLYTVLCGQLLCFF****************IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH*************************************************************************************************************************************************************************************KK***HLII
Disordered Region (DISEMBL)
***********KADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLER************VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTS*********************KHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSLNNRQSVNNSKSSTLPPYVNPPYV**************************PNVLSSLFRK********
Disordered Region (DISPRO)
*******************************************DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSL****************************************************************************************SDM*S*GHGTIYQN**PPQHIGPPPT*******************VNPPYVKENSTRR*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKDLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSLNNRQSVNNSKSSTLPPYVNPPYVKENSTRRPSESSSESEPTSVQRKDKRPNVLSSLFRKKKATHLII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q62261	2363	Spectrin beta chain, non-	yes	N/A	0.398	0.057	0.356	1e-16
Q01082	2364	Spectrin beta chain, non-	yes	N/A	0.398	0.057	0.349	2e-16
O15020	2390	Spectrin beta chain, non-	no	N/A	0.281	0.040	0.396	8e-13
Q9QWN8	2388	Spectrin beta chain, non-	no	N/A	0.281	0.040	0.378	1e-11
Q9H254	2564	Spectrin beta chain, non-	no	N/A	0.299	0.040	0.415	2e-11
Q8NDX1	1056	PH and SEC7 domain-contai	no	N/A	0.401	0.130	0.293	2e-11
Q00963	2291	Spectrin beta chain OS=Dr	no	N/A	0.276	0.041	0.348	1e-09
Q8BLR5	1005	PH and SEC7 domain-contai	no	N/A	0.331	0.113	0.317	2e-09
Q9NRC6	3674	Spectrin beta chain, non-	no	N/A	0.281	0.026	0.371	9e-09
Q9BQI7	771	PH and SEC7 domain-contai	no	N/A	0.308	0.137	0.333	2e-08

>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus GN=Sptbn1 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 6/143 (4%)

Query: 16   TKKPKRTPSFTTRRRTQSFRKLQKLEQLD----QLPPVEIQGVLERKHELQSGGKKAAVR 71
            +K+    PS T  R+ +S    Q    L     + P  +++G L RKHE ++  KKA+ R
Sbjct: 2160 SKESSPVPSPTLDRKAKSALPAQSAATLPARTLETPAAQMEGFLNRKHEWEAHNKKASSR 2219

Query: 72   SWKSLYTVLCGQLLCFFKDQDDFVASKAATS--PIIIFKARCEKAGDYTKRKHVFRLYCT 129
            SW ++Y V+  Q + F+KD     +     S  P+ + +A CE A DY K+KHVF+L  +
Sbjct: 2220 SWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLS 2279

Query: 130  DGSEFLFLAPSETLMEDWVNKIS 152
            DG+E+LF A  +  M  W+  IS
Sbjct: 2280 DGNEYLFQAKDDEEMNTWIQAIS 2302

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.
Mus musculus (taxid: 10090)

>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 6/143 (4%)

Query: 16   TKKPKRTPSFTTRRRTQSFRKLQKLEQL----DQLPPVEIQGVLERKHELQSGGKKAAVR 71
            +K+    PS T+ R+ ++    Q    L     + P  +++G L RKHE ++  KKA+ R
Sbjct: 2161 SKESSPIPSPTSDRKAKTALPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSR 2220

Query: 72   SWKSLYTVLCGQLLCFFKDQDDFVASKAATS--PIIIFKARCEKAGDYTKRKHVFRLYCT 129
            SW ++Y V+  Q + F+KD     +     S  P+ + +A CE A DY K+KHVF+L   
Sbjct: 2221 SWHNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLKEAVCEVALDYKKKKHVFKLRLN 2280

Query: 130  DGSEFLFLAPSETLMEDWVNKIS 152
            DG+E+LF A  +  M  W+  IS
Sbjct: 2281 DGNEYLFQAKDDEEMNTWIQAIS 2303

Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.

Homo sapiens (taxid: 9606)

>sp|O15020|SPTN2_HUMAN Spectrin beta chain, non-erythrocytic 2 OS=Homo sapiens GN=SPTBN2 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 14/111 (12%)

Query: 50   EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS------- 102
            +++G+L RK E+++ GKKAA RSW+++Y VL    L F+KD      +KAA++       
Sbjct: 2220 QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKD------AKAASAGVPYHGE 2273

Query: 103  -PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A+   A DY KRKHVF+L   DG E+LF A  E  M  W+  ++
Sbjct: 2274 VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVN 2324

Probably plays an important role in neuronal membrane skeleton.

Homo sapiens (taxid: 9606)

>sp|Q9QWN8|SPTN2_RAT Spectrin beta chain, non-erythrocytic 2 OS=Rattus norvegicus GN=Sptbn2 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 14/111 (12%)

Query: 50   EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS------- 102
            +++G L RK E+++  KKAA RSW+++Y VL    L F+KD      ++AA++       
Sbjct: 2220 QMEGTLCRKQEMEAFNKKAANRSWQNVYCVLRRGSLGFYKD------ARAASAGVPYHGE 2273

Query: 103  -PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A+   A DY KRKHVF+L   DG E+LF A  E  M  W+  ++
Sbjct: 2274 VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVN 2324

Probably plays an important role in neuronal membrane skeleton.

Rattus norvegicus (taxid: 10116)

>sp|Q9H254|SPTN4_HUMAN Spectrin beta chain, non-erythrocytic 4 OS=Homo sapiens GN=SPTBN4 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 49   VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA-SKAATSPII-I 106
            V+ +G L RK EL +  +K++ RSW SLY VL    L F+KD     + S     P++ +
Sbjct: 2419 VQHEGFLLRKRELDAN-RKSSNRSWVSLYCVLSKGELGFYKDSKGPASGSTHGGEPLLSL 2477

Query: 107  FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             KA  E A DY K+KHVF+L   DGSEFL  A  E  M  W+  ++
Sbjct: 2478 HKATSEVASDYKKKKHVFKLQTQDGSEFLLQAKDEEEMNGWLEAVA 2523

Homo sapiens (taxid: 9606)

>sp|Q8NDX1|PSD4_HUMAN PH and SEC7 domain-containing protein 4 OS=Homo sapiens GN=PSD4 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 14  DLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQSGGKKA--AVR 71
           D  +  K  PS    + ++ F +L +    D   P   QG+L RK    + GKK     R
Sbjct: 746 DTARPEKAQPSLPAGKMSKPFLQLAQ----DPTVPTYKQGILARKMHQDADGKKTPWGKR 801

Query: 72  SWKSLYTVLCGQLLCFFKDQDDF------VASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
            WK  +T+L G +L F K  +D       +  +    P+ +  +    A  YTK+ HVF+
Sbjct: 802 GWKMFHTLLRGMVLYFLKQGEDHCLEGESLVGQMVDEPVGVHHSLATPATHYTKKPHVFQ 861

Query: 126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA 155
           L   D   +LF AP+   M  W+ +I+  A
Sbjct: 862 LRTADWRLYLFQAPTAKEMSSWIARINLAA 891

Guanine nucleotide exchange factor for ARF6 and ARL14/ARF7. Through ARL14 activation, controls the movement of MHC class II-containing vesicles along the actin cytoskeleton in dendritic cells. Involved in membrane recycling. Interacts with several phosphatidylinositol phosphate species, including phosphatidylinositol 3,4-bisphosphate, phosphatidylinositol 3,5-bisphosphate and phosphatidylinositol 4,5-bisphosphate.

Homo sapiens (taxid: 9606)

>sp|Q00963|SPTCB_DROME Spectrin beta chain OS=Drosophila melanogaster GN=beta-Spec PE=1 SV=2

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 14/109 (12%)

Query: 52   QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK--- 108
            +G + RKHE  S  KKA+ RSW  +Y       + F+KDQ  +      ++P + F+   
Sbjct: 2151 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGY-----KSNPELTFRGEP 2205

Query: 109  ------ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
                  A  E A DYTK+KHV R+   +G+ FL  A  +T M  WV  +
Sbjct: 2206 SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSL 2254

Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. Interacts with calmodulin in a calcium-dependent manner.

Drosophila melanogaster (taxid: 7227)

>sp|Q8BLR5|PSD4_MOUSE PH and SEC7 domain-containing protein 4 OS=Mus musculus GN=Psd4 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 42  QLDQLP--PVEIQGVLERKHELQSGGKKA--AVRSWKSLYTVLCGQLLCFFKDQDDFVAS 97
           Q+ Q P  P   QG+L RK    + GKK     R WK  +T+L G +L F K +  ++  
Sbjct: 718 QMAQDPTMPTYKQGILARKMHHIADGKKTPWGKRGWKMFHTLLRGMVLYFLKGEGQWLDG 777

Query: 98  KAATS-----PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
           ++        P+ +  +    A  YTK+ HVF+L   D   +LF AP+   M  W+ +I+
Sbjct: 778 ESLVGHMVDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMASWIARIN 837

Query: 153 FHA 155
             A
Sbjct: 838 LAA 840

Guanine nucleotide exchange factor for ARF6 and ARL14/ARF7. Through ARL14 activation, controls the movement of MHC class II-containing vesicles along the actin cytoskeleton in dendritic cells. Involved in membrane recycling. Interacts with several phosphatidylinositol phosphate species, including phosphatidylinositol 3,4-bisphosphate, phosphatidylinositol 3,5-bisphosphate and phosphatidylinositol 4,5-bisphosphate.

Mus musculus (taxid: 10090)

>sp|Q9NRC6|SPTN5_HUMAN Spectrin beta chain, non-erythrocytic 5 OS=Homo sapiens GN=SPTBN5 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 48/97 (49%)

Query: 51   IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR 110
            ++G LE K  L  GG++ +  SW S    L G  L  F D+       A+ + + +  AR
Sbjct: 3536 MEGSLEFKQHLLPGGRQPSSSSWDSCRGTLQGSSLSLFLDERMAAEKVASIALLDLTGAR 3595

Query: 111  CEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDW 147
            CE+      RKH F L  T G+E LF APSE   E W
Sbjct: 3596 CERLRGRHGRKHTFSLRLTSGAEILFAAPSEEQAESW 3632

Homo sapiens (taxid: 9606)

>sp|Q9BQI7|PSD2_HUMAN PH and SEC7 domain-containing protein 2 OS=Homo sapiens GN=PSD2 PE=2 SV=3

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 52  QGVLERKHELQSGGKKA--AVRSWKSLYTVLCGQLLCFFKDQ---DDFVASKAATSPIII 106
            GVL RK      GK+     R WK  Y VL G +L   KD+   D  ++     + I +
Sbjct: 516 HGVLTRKTHADMDGKRTPRGRRGWKKFYAVLKGTILYLQKDEYRPDKALSEGDLKNAIRV 575

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
             A   +A DY+K+ +V +L   D   FLF APS+  M  W+ +I+  A +
Sbjct: 576 HHALATRASDYSKKSNVLKLKTADWRVFLFQAPSKEEMLSWILRINLVAAI 626

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
328720391	4083	PREDICTED: spectrin beta chain-like isof	0.450	0.037	0.843	4e-84
328720389	4047	PREDICTED: spectrin beta chain-like isof	0.450	0.038	0.843	4e-84
328777761	4216	PREDICTED: spectrin beta chain [Apis mel	0.485	0.039	0.827	1e-78
340717274	4143	PREDICTED: spectrin beta chain, brain 4-	0.491	0.040	0.817	3e-78
340717276	4224	PREDICTED: spectrin beta chain, brain 4-	0.491	0.040	0.817	3e-78
350407651	4247	PREDICTED: spectrin beta chain, brain 4-	0.491	0.039	0.817	3e-78
383856370	4280	PREDICTED: spectrin beta chain, brain 4-	0.485	0.039	0.827	7e-78
307173781	4197	Spectrin beta chain, brain 4 [Camponotus	0.485	0.039	0.821	6e-77
345481110	4271	PREDICTED: spectrin beta chain, brain 1-	0.485	0.039	0.821	2e-76
242020108	4215	Spectrin beta chain, putative [Pediculus	0.485	0.039	0.730	8e-72

>gi|328720391|ref|XP_001946129.2| PREDICTED: spectrin beta chain-like isoform 3 [Acyrthosiphon pisum]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 161/173 (93%)

Query: 1    MRKDLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHE 60
            ++KD+KRAESMKAD+ KKPKRTPSFTTRRRTQSFRKLQKLE +DQLPPVEIQG L+RKHE
Sbjct: 3699 LKKDVKRAESMKADVYKKPKRTPSFTTRRRTQSFRKLQKLENVDQLPPVEIQGFLDRKHE 3758

Query: 61   LQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKR 120
            LQS GKKAAVRSWK+ YTVLCGQLLCFFKDQ+DFV+SKAATSPII+FKA+CEKA DYTKR
Sbjct: 3759 LQSTGKKAAVRSWKTFYTVLCGQLLCFFKDQEDFVSSKAATSPIIVFKAKCEKAFDYTKR 3818

Query: 121  KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVS 173
            KHVFRL CTDGSEFLFLA +   ME+WVNKI+FHAQLPPSLQLLSYDD+QK S
Sbjct: 3819 KHVFRLCCTDGSEFLFLADTSKEMEEWVNKITFHAQLPPSLQLLSYDDNQKGS 3871

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720389|ref|XP_003247015.1| PREDICTED: spectrin beta chain-like isoform 2 [Acyrthosiphon pisum]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 161/173 (93%)

Query: 1    MRKDLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHE 60
            ++KD+KRAESMKAD+ KKPKRTPSFTTRRRTQSFRKLQKLE +DQLPPVEIQG L+RKHE
Sbjct: 3663 LKKDVKRAESMKADVYKKPKRTPSFTTRRRTQSFRKLQKLENVDQLPPVEIQGFLDRKHE 3722

Query: 61   LQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKR 120
            LQS GKKAAVRSWK+ YTVLCGQLLCFFKDQ+DFV+SKAATSPII+FKA+CEKA DYTKR
Sbjct: 3723 LQSTGKKAAVRSWKTFYTVLCGQLLCFFKDQEDFVSSKAATSPIIVFKAKCEKAFDYTKR 3782

Query: 121  KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVS 173
            KHVFRL CTDGSEFLFLA +   ME+WVNKI+FHAQLPPSLQLLSYDD+QK S
Sbjct: 3783 KHVFRLCCTDGSEFLFLADTSKEMEEWVNKITFHAQLPPSLQLLSYDDNQKGS 3835

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777761|ref|XP_396777.4| PREDICTED: spectrin beta chain [Apis mellifera]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 152/168 (90%), Gaps = 1/168 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRKLQ++E +D LPPVEIQG+LERKHELQS
Sbjct: 3740 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKLQRMENMDALPPVEIQGLLERKHELQS 3798

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GKKAAVRSWK  YTVLCGQLLCFFKD +DF +SKAAT+PI IF A CEKA DYTK+K+V
Sbjct: 3799 AGKKAAVRSWKQYYTVLCGQLLCFFKDMEDFTSSKAATAPITIFNAICEKADDYTKKKNV 3858

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQK 171
            FRL CTDGSEFLFLAPS+  MEDWVNKISFHA+LPPSLQLLSYD+SQK
Sbjct: 3859 FRLKCTDGSEFLFLAPSQQEMEDWVNKISFHAKLPPSLQLLSYDESQK 3906

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717274|ref|XP_003397110.1| PREDICTED: spectrin beta chain, brain 4-like isoform 1 [Bombus terrestris]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%), Gaps = 1/170 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRKLQ++E +D LPPVEIQG+LERKHELQS
Sbjct: 3689 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKLQRMENMDALPPVEIQGLLERKHELQS 3747

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GKKAAVRSWK  YTVLCGQLLCFFKD +DF  SKAAT+PI IF A CEKA DYTK+K+V
Sbjct: 3748 AGKKAAVRSWKQYYTVLCGQLLCFFKDMEDFSLSKAATAPITIFNAICEKADDYTKKKNV 3807

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVS 173
            FRL CTDGSEFLFLAPS+  MEDWVNKISFHA+LPPS+QLLSYD+SQK S
Sbjct: 3808 FRLKCTDGSEFLFLAPSQQEMEDWVNKISFHAKLPPSMQLLSYDESQKES 3857

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717276|ref|XP_003397111.1| PREDICTED: spectrin beta chain, brain 4-like isoform 2 [Bombus terrestris]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%), Gaps = 1/170 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRKLQ++E +D LPPVEIQG+LERKHELQS
Sbjct: 3745 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKLQRMENMDALPPVEIQGLLERKHELQS 3803

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GKKAAVRSWK  YTVLCGQLLCFFKD +DF  SKAAT+PI IF A CEKA DYTK+K+V
Sbjct: 3804 AGKKAAVRSWKQYYTVLCGQLLCFFKDMEDFSLSKAATAPITIFNAICEKADDYTKKKNV 3863

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVS 173
            FRL CTDGSEFLFLAPS+  MEDWVNKISFHA+LPPS+QLLSYD+SQK S
Sbjct: 3864 FRLKCTDGSEFLFLAPSQQEMEDWVNKISFHAKLPPSMQLLSYDESQKES 3913

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407651|ref|XP_003488149.1| PREDICTED: spectrin beta chain, brain 4-like [Bombus impatiens]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 152/170 (89%), Gaps = 1/170 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRKLQ++E +D LPPVEIQG+LERKHELQS
Sbjct: 3768 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKLQRMENMDALPPVEIQGLLERKHELQS 3826

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GKKAAVRSWK  YTVLCGQLLCFFKD +DF  SKAAT+PI IF A CEKA DYTK+K+V
Sbjct: 3827 AGKKAAVRSWKQYYTVLCGQLLCFFKDMEDFSLSKAATAPITIFNAICEKADDYTKKKNV 3886

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVS 173
            FRL CTDGSEFLFLAPS+  MEDWVNKISFHA+LPPS+QLLSYD+SQK S
Sbjct: 3887 FRLKCTDGSEFLFLAPSQQEMEDWVNKISFHAKLPPSMQLLSYDESQKES 3936

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856370|ref|XP_003703682.1| PREDICTED: spectrin beta chain, brain 4-like [Megachile rotundata]

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 150/168 (89%), Gaps = 1/168 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRKLQ++E +D LPPVEIQG LERKHELQS
Sbjct: 3808 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKLQRMENMDALPPVEIQGFLERKHELQS 3866

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GKKAAVRSWK  YTVLCGQLLCFFKD +DF  SKAAT+PI IF A CEKA DYTK+K+V
Sbjct: 3867 AGKKAAVRSWKQYYTVLCGQLLCFFKDTEDFSLSKAATAPITIFNAICEKANDYTKKKNV 3926

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQK 171
            FRL CTDGSEFLFLAPS+  MEDWVNKISFHA+LPPSLQLLSYD+SQK
Sbjct: 3927 FRLKCTDGSEFLFLAPSQQEMEDWVNKISFHAKLPPSLQLLSYDESQK 3974

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173781|gb|EFN64568.1| Spectrin beta chain, brain 4 [Camponotus floridanus]

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRKLQ++E +D L PVEIQG LERKHELQS
Sbjct: 3705 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKLQRMENMDALRPVEIQGFLERKHELQS 3763

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GKKAAVRSWK  YTVLCGQLLCFFKD +DF  SKAAT+PI IF A CEKA DYTK+K+V
Sbjct: 3764 AGKKAAVRSWKQYYTVLCGQLLCFFKDVEDFSLSKAATAPITIFNALCEKADDYTKKKNV 3823

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQK 171
            FRL CTDGSEFLFLAPS+  MEDWVNKISFHA+LPPSLQLLSYD+SQK
Sbjct: 3824 FRLKCTDGSEFLFLAPSQQEMEDWVNKISFHAKLPPSLQLLSYDESQK 3871

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481110|ref|XP_001606391.2| PREDICTED: spectrin beta chain, brain 1-like [Nasonia vitripennis]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 4    DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQS 63
            D+KRAESMK D TKKPKRTPSFTTRRRTQSFRK Q++E +D LPPVEIQGVLERKHELQS
Sbjct: 3768 DIKRAESMKVD-TKKPKRTPSFTTRRRTQSFRKHQRIENVDSLPPVEIQGVLERKHELQS 3826

Query: 64   GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
            GGKKAAVRSWK  YTVLCGQLLCFFKD DDF +SKAAT+PI IF   CE+A DYTKRK+V
Sbjct: 3827 GGKKAAVRSWKPYYTVLCGQLLCFFKDIDDFQSSKAATAPINIFHGTCERAEDYTKRKNV 3886

Query: 124  FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQK 171
            FRL CTDGSEFLFLA S+  MEDWVNKISFHA+LPPSLQL+SYDDS K
Sbjct: 3887 FRLKCTDGSEFLFLASSKQDMEDWVNKISFHAKLPPSLQLMSYDDSHK 3934

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020108|ref|XP_002430498.1| Spectrin beta chain, putative [Pediculus humanus corporis] gi|212515655|gb|EEB17760.1| Spectrin beta chain, putative [Pediculus humanus corporis]

 Score =  276 bits (707), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 152/182 (83%), Gaps = 15/182 (8%)

Query: 1    MRKDLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHE 60
            MR+++KRAESMK + TKKPKRTPSFTTRRRTQSFRKL         PPVEI+G+L+RK +
Sbjct: 3842 MRREMKRAESMKIE-TKKPKRTPSFTTRRRTQSFRKL---------PPVEIRGLLDRKQD 3891

Query: 61   LQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKR 120
            LQSGGKKA VRSWK+ YTVLCGQLLCFFKD++DFV SKAA+SP+ I KA+CEKA DYTKR
Sbjct: 3892 LQSGGKKAPVRSWKTFYTVLCGQLLCFFKDKEDFVNSKAASSPVSILKAKCEKAQDYTKR 3951

Query: 121  KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQK-----VSQY 175
            KHVFRL CTDGSE+LFLA SE  M DW+NKISFHAQLPPS+QLLSYD+SQK     +S  
Sbjct: 3952 KHVFRLCCTDGSEYLFLADSEEKMSDWINKISFHAQLPPSMQLLSYDESQKNNEDRISNT 4011

Query: 176  TG 177
            TG
Sbjct: 4012 TG 4013

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
FB|FBgn0004167	4337	kst "karst" [Drosophila melano	0.537	0.042	0.552	2.9e-45
WB|WBGene00004855	4166	sma-1 [Caenorhabditis elegans	0.377	0.031	0.492	1.1e-29
UNIPROTKB|F1ND51	2364	SPTBN1 "Uncharacterized protei	0.296	0.043	0.405	1.6e-15
MGI|MGI:98388	2363	Sptbn1 "spectrin beta, non-ery	0.313	0.045	0.390	2e-15
UNIPROTKB|F1LRX5	2310	Sptbn1 "Protein Sptbn1" [Rattu	0.313	0.046	0.381	1.3e-14
UNIPROTKB|F1PXT8	2351	SPTBN1 "Uncharacterized protei	0.313	0.045	0.390	1.3e-14
UNIPROTKB|F1MYC9	2363	SPTBN1 "Uncharacterized protei	0.313	0.045	0.390	1.3e-14
UNIPROTKB|G3V6S0	2363	Sptbn1 "Protein Sptbn1" [Rattu	0.313	0.045	0.381	1.3e-14
UNIPROTKB|F1PXU1	2364	SPTBN1 "Uncharacterized protei	0.313	0.045	0.390	1.3e-14
UNIPROTKB|Q01082	2364	SPTBN1 "Spectrin beta chain, n	0.313	0.045	0.390	1.3e-14

FB|FBgn0004167 kst "karst" [Drosophila melanogaster (taxid:7227)]

 Score = 495 (179.3 bits), Expect = 2.9e-45, P = 2.9e-45
 Identities = 105/190 (55%), Positives = 124/190 (65%)

Query:     4 DLKRAESMKADLXXXXXXXXXXXXXXXXXXXXXLQKLEQLDQLPPVEIQGVLERKHELQS 63
             ++KRAESMK                         QK E  D LPPVEIQG LERKH LQS
Sbjct:  3756 NVKRAESMKVQPKQAKRTPSFTTRRRAQSFRKN-QKGEGFD-LPPVEIQGSLERKHGLQS 3813

Query:    64 GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
             GGKKA VRSWK  +TVLCGQL+CFFKD++DF+  K AT+P+ I  A+CE+A DYTK+K+V
Sbjct:  3814 GGKKAPVRSWKQFHTVLCGQLVCFFKDENDFLQQKTATAPVNILGAKCERADDYTKKKYV 3873

Query:   124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEK 183
             FRL   DGSEFLF APS  ++ DWV KISFHA LPP++QLLSYD+S K    +   I   
Sbjct:  3874 FRLKLPDGSEFLFEAPSLDILNDWVRKISFHASLPPNMQLLSYDESMKQQSSSSPDI--- 3930

Query:   184 KKTSIFEEEV 193
             K TS  E  V
Sbjct:  3931 KVTSSVESPV 3940

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0007009 "plasma membrane organization" evidence=TAS

GO:0003779 "actin binding" evidence=ISS;IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0008091 "spectrin" evidence=ISS

GO:0016327 "apicolateral plasma membrane" evidence=TAS

GO:0045186 "zonula adherens assembly" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0032432 "actin filament bundle" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0010797 "regulation of multivesicular body size involved in endosome transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IMP

WB|WBGene00004855 sma-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 348 (127.6 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 64/130 (49%), Positives = 89/130 (68%)

Query:    37 LQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA 96
             ++K  + + +  ++++G  +RK   QSGGK+A +RSWK+ Y +LCGQLLCFFKD+  F+ 
Sbjct:  3766 IRKGSRWEDMGAIDMKGFFDRKQCQQSGGKRATIRSWKNYYGILCGQLLCFFKDEQQFLE 3825

Query:    97 SKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
             + AA  P+ I+ A+CE+  +Y KRK+ FRL   DGSEF+F  P E  M +WV KI FHA 
Sbjct:  3826 NVAAAPPVYIYGAQCEQYPEYAKRKNSFRLLLQDGSEFIFSCPDERQMLEWVAKIKFHAH 3885

Query:   157 LPPSLQLLSY 166
             L PS QL SY
Sbjct:  3886 LTPSNQLKSY 3895

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0046622 "positive regulation of organ growth" evidence=IMP

GO:0045793 "positive regulation of cell size" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IGI;IMP

GO:0010172 "embryonic body morphogenesis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

UNIPROTKB|F1ND51 SPTBN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 47/116 (40%), Positives = 70/116 (60%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             ++P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD      SKAA S  
Sbjct:  2195 EIPSAQMEGFLHRKHEWETHNKKASSRSWHNVYCVINNQEMGFYKD------SKAAASGI 2248

Query:   103 ------PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
                   P+ + +A CE A DY K+KHVF+L  TDG+E+LF A  +  M  W+  I+
Sbjct:  2249 PYHNEIPVSLKEAVCEIAVDYKKKKHVFKLRLTDGNEYLFQAKDDEEMNTWIQAIT 2304

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007182 "common-partner SMAD protein phosphorylation" evidence=IEA

GO:0007184 "SMAD protein import into nucleus" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0032437 "cuticular plate" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

MGI|MGI:98388 Sptbn1 "spectrin beta, non-erythrocytic 1" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 43/110 (39%), Positives = 66/110 (60%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2193 ETPAAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEV 2252

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L  +DG+E+LF A  +  M  W+  IS
Sbjct:  2253 PVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 2302

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0003779 "actin binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007182 "common-partner SMAD protein phosphorylation" evidence=IDA

GO:0007184 "SMAD protein import into nucleus" evidence=IDA

GO:0008091 "spectrin" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0030506 "ankyrin binding" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=IDA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032437 "cuticular plate" evidence=IDA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051693 "actin filament capping" evidence=IEA

GO:0071709 "membrane assembly" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

UNIPROTKB|F1LRX5 Sptbn1 "Protein Sptbn1" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 42/110 (38%), Positives = 66/110 (60%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2140 ETPAAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGVPYHSEV 2199

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L  +DG+E+LF A  +  M  W+  I+
Sbjct:  2200 PVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDDEMNTWIQAIT 2249

GO:0003779 "actin binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

UNIPROTKB|F1PXT8 SPTBN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 43/110 (39%), Positives = 65/110 (59%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2181 ETPSAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKTAASGIPYHSEV 2240

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L   DG+E+LF A  +  M  W+  IS
Sbjct:  2241 PVSLKEAICEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAIS 2290

GO:0003779 "actin binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

UNIPROTKB|F1MYC9 SPTBN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 43/110 (39%), Positives = 65/110 (59%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2193 ETPSAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKTAASGIPYHSEV 2252

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L   DG+E+LF A  +  M  W+  IS
Sbjct:  2253 PVSLKEAICEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAIS 2302

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0032437 "cuticular plate" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0007184 "SMAD protein import into nucleus" evidence=IEA

GO:0007182 "common-partner SMAD protein phosphorylation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|G3V6S0 Sptbn1 "Protein Sptbn1" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 42/110 (38%), Positives = 66/110 (60%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2193 ETPAAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGVPYHSEV 2252

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L  +DG+E+LF A  +  M  W+  I+
Sbjct:  2253 PVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDDEMNTWIQAIT 2302

GO:0003779 "actin binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

UNIPROTKB|F1PXU1 SPTBN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 43/110 (39%), Positives = 65/110 (59%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2194 ETPSAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKTAASGIPYHSEV 2253

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L   DG+E+LF A  +  M  W+  IS
Sbjct:  2254 PVSLKEAICEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAIS 2303

GO:0003779 "actin binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

UNIPROTKB|Q01082 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 43/110 (39%), Positives = 65/110 (59%)

Query:    45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-- 102
             + P  +++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  
Sbjct:  2194 ETPSAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKTAASGIPYHSEV 2253

Query:   103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             P+ + +A CE A DY K+KHVF+L   DG+E+LF A  +  M  W+  IS
Sbjct:  2254 PVSLKEAVCEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAIS 2303

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008091 "spectrin" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0007182 "common-partner SMAD protein phosphorylation" evidence=IEA

GO:0007184 "SMAD protein import into nucleus" evidence=IEA

GO:0032437 "cuticular plate" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0071709 "membrane assembly" evidence=IMP

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0007009 "plasma membrane organization" evidence=IMP

GO:0030506 "ankyrin binding" evidence=NAS;IPI

GO:0014731 "spectrin-associated cytoskeleton" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=IMP

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0030673 "axolemma" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	344
cd10571	105	cd10571, PH_beta_spectrin, Beta-spectrin pleckstri	1e-52
cd01253	113	cd01253, PH_ARHGAP21-like, ARHGAP21 and related pr	2e-21
cd13295	126	cd13295, PH_EFA6, Exchange Factor for ARF6 Pleckst	3e-19
pfam00169	101	pfam00169, PH, PH domain	3e-12
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-12
cd13233	110	cd13233, PH_ARHGAP9-like, Beta-spectrin pleckstrin	2e-09
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	3e-07
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	8e-06
cd01230	127	cd01230, PH1_Tiam1_2, T-lymphoma invasion and meta	4e-05
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	3e-04
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	6e-04
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	7e-04
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	0.001
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	0.002
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	0.003

>gnl|CDD|241307 cd10571, PH_beta_spectrin, Beta-spectrin pleckstrin homology (PH) domain

 Score =  168 bits (429), Expect = 1e-52
 Identities = 57/105 (54%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF-VASKAATSPIIIFKA 109
           ++G LERKHEL+SGGKKA+ RSWK +Y VL GQ L F+KDQ      S A   P+ +  A
Sbjct: 1   MEGFLERKHELESGGKKASNRSWKKVYCVLKGQELSFYKDQKAAASESYAGEPPLNLSGA 60

Query: 110 RCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154
            CE A DY K+KHVFRL  +DGSE+LF A  E  M DWV K+   
Sbjct: 61  VCEVASDYKKKKHVFRLRLSDGSEYLFQAKDEEEMNDWVQKLQAA 105

Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to inositol-1,4,5-trisphosphate. The PH domain of beta-spectrin is thought to play a role in the association of spectrin with the plasma membrane of cells. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin homology (PH) domain

 Score = 87.4 bits (217), Expect = 2e-21
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDD-----FVASKAATSPIII 106
           +G L  K  +   GK+A+ RSWK ++ VL G  L  +KD+ +       A  +    I I
Sbjct: 3   EGWLHFKQSVLEKGKRASDRSWKQVWAVLRGHSLYLYKDKRETSPALSAAEDSEQ-RIDI 61

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
                + A  YTKRK+VFRL  +DGSE+LF A     M  W+  I
Sbjct: 62  RSCIVDIAYSYTKRKNVFRLTTSDGSEYLFQAEDRDDMLGWIKAI 106

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with a RhoGAP domain. These proteins functions as a GTPase-activating protein (GAP) for RHOA and CDC42. ARHGAP21 controls the Arp2/3 complex and F-actin dynamics at the Golgi complex by regulating the activity of the small GTPase Cdc42. It is recruited to the Golgi by to GTPase, ARF1, through its PH domain and its helical motif. It is also required for CTNNA1 recruitment to adherens junctions. ARHGAP21 and it related proteins all contains a PH domain and a RhoGAP domain. Some of the members have additional N-terminal domains including PDZ, SH3, and SPEC. The ARHGAP21 PH domain interacts with the GTPbound forms of both ARF1 and ARF6 ARF-binding domain/ArfBD. The members here include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241449 cd13295, PH_EFA6, Exchange Factor for ARF6 Pleckstrin homology (PH) domain

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 52  QGVLERKHELQSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDF---VASKAATSPIII 106
           +G L RK      GKK     R WK  Y  L G +L   KD+      ++ ++  + I +
Sbjct: 9   KGYLMRKCHADPDGKKTPRGKRGWKMFYATLKGLVLYLHKDEYGCKKQLSYESLRNAISV 68

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL---PP 159
             +  EKA DYTK+ HVFRL   D  EFLF A     M+ W+  I+  A     PP
Sbjct: 69  HHSLAEKATDYTKKPHVFRLQTADWREFLFQASDTEEMQSWIEAINLVAAAFSAPP 124

EFA6 (also called PSD/pleckstrin and Sec7 domain containing) is an guanine nucleotide exchange factor for ADP ribosylation factor 6 (ARF6), which is involved in membrane recycling. EFA6 has four structurally related polypeptides: EFA6A, EFA6B, EFA6C and EFA6D. It consists of a N-terminal proline rich region (PR), a SEC7 domain, a PH domain, a PR, a coiled-coil region, and a C-terminal PR. The EFA6 PH domain regulates its association with the plasma membrane. EFA6 activates Arf6 through its Sec7 catalytic domain and modulates this activity through its C-terminal domain, which rearranges the actin cytoskeleton in fibroblastic cell lines. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 126

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
           V  +G L +K            +SWK  Y VL   +L ++KD     +S      I +  
Sbjct: 1   VIKEGWLLKKGSGGR-------KSWKKRYFVLFDGVLLYYKDSKK--SSSRPKGSIPLSG 51

Query: 109 ARCEKAGDYT--KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155
            +  K  D    KRK+ F +   D   FL  A SE   ++WV  I    
Sbjct: 52  CQVTKVPDSEDGKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 61.8 bits (150), Expect = 4e-12
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
           V  +G L +K            +SWK  Y VL    L ++K + D  + K   S I +  
Sbjct: 1   VIKEGWLYKK-------SGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGS-IDLSG 52

Query: 109 ARCEKAGDYT--KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
               +A D    K+ H F +  +D    L  A SE   E WV  +     
Sbjct: 53  CTVREAPDPDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAIA 102

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241387 cd13233, PH_ARHGAP9-like, Beta-spectrin pleckstrin homology (PH) domain

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS-PIIIFK-- 108
           QG+L +    ++G K    ++W + + VL G  L F+KDQ    AS    S P       
Sbjct: 3   QGLLNKTKIAENGKKLR--KNWSTSWVVLTGSHLLFYKDQKSAAASGGPQSKPESSVDLR 60

Query: 109 -ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
            A  E A + + RK+VF+L    G+E+L  + ++T +++W + I 
Sbjct: 61  GASIEWAKEKSSRKNVFQLSTVTGTEYLLQSDNDTEIQEWFDAIK 105

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with RhoGAP domain. The ARHGAP members here all have a PH domain upstream of their C-terminal RhoGAP domain. Some have additional N-terminal SH3 and WW domains. The members here include: ARHGAP9, ARHGAP12, ARHGAP15, and ARHGAP27. ARHGAP27 and ARHGAP12 shared the common-domain structure, consisting of SH3, WW, PH, and RhoGAP domains. The PH domain of ArhGAP9 employs a non-canonical phosphoinositide binding mechanism, a variation of the spectrin- Ins(4,5)P2-binding mode, that gives rise to a unique PI binding profile, namely a preference for both PI(4,5)P2 and the PI 3-kinase products PI(3,4,5)P3 and PI(3,4)P2. This lipid binding mechanism is also employed by the PH domain of Tiam1 and Slm1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR 110
            +G L+++           ++SWK  + VL   +L ++K + D  +SK     I +    
Sbjct: 1   KEGWLKKRGGK-------GLKSWKKRWFVLFDDVLLYYKSKKD--SSKKPKGLIPLSDGL 51

Query: 111 CEKAGDYTKRKHVFRLYCTDGSE-FLFLAPSETLMEDWVNK 150
             +    + + + F L   D    +   A SE   E+W+  
Sbjct: 52  EVELVSSSGKPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR 110
            QG L ++     GG K     W   + VL G  L  F+ Q+    +KA    I +    
Sbjct: 1   YQGWLYQRRRKGKGGGK-----WAKRWFVLKGSNLYGFRSQES---TKADCV-IFLPGFT 51

Query: 111 CEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNK 150
              A +   RK+ F++Y T G+ F F A S+  M+ W++ 
Sbjct: 52  VSPAPEVKSRKYAFKVYHT-GTVFYFAAESQEDMKKWLDL 90

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241264 cd01230, PH1_Tiam1_2, T-lymphoma invasion and metastasis 1 and 2 Pleckstrin Homology (PH) domain, N-terminal domain

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 68  AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC--EKAGDYTKRKHVFR 125
           A+ R WK  +  L G  L F++  +       +T    +F      +   ++ K+ +VF 
Sbjct: 26  ASRRKWKKYWVTLKGCTLLFYECDERTGIDDNSTPKHALFVEGSIAQAVPEHPKKDNVFC 85

Query: 126 LYCTDGSEFLFLAPSETLMEDWVNKI 151
           L  + G  +LF A S+T +E+W+  I
Sbjct: 86  LSNSFGDAYLFQATSQTELENWITAI 111

Tiam1 activates Rac GTPases to induce membrane ruffling and cell motility while Tiam2 (also called STEF (SIF (still life) and Tiam1 like-exchange factor) contributes to neurite growth. Tiam1/2 are Dbl-family of GEFs that possess a Dbl(DH) domain with a PH domain in tandem. DH-PH domain catalyzes the GDP/GTP exchange reaction in the GTPase cycle and facillitating the switch between inactive GDP-bound and active GTP-bound states. Tiam1/2 possess two PH domains, which are often referred to as PHn and PHc domains. The DH-PH tandem domain is made up of the PHc domain while the PHn is part of a novel N-terminal PHCCEx domain which is made up of the PHn domain, a coiled coil region(CC), and an extra region (Ex). PHCCEx mediates binding to plasma membranes and signalling proteins in the activation of Rac GTPases. The PH domain resembles the beta-spectrin PH domain, suggesting non-canonical phosphatidylinositol binding. CC and Ex form a positively charged surface for protein binding. There are 2 motifs in Tiam1/2-interacting proteins that bind to the PHCCEx domain: Motif-I in CD44, ephrinBs, and the NMDA receptor and Motif-II in Par3 and JIP2.Neither of these fall in the PHn domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 127

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 71  RSWKSLYTVLCGQLLCFFKDQDDFVASKAA----TSPIIIFKARCEKAGDYTKRKHVFRL 126
           ++WK  + VL    L ++KD+ +    K       S +    A  +      KRK+VF +
Sbjct: 20  KTWKKRWFVLRPCQLSYYKDEKE---YKLRRVINLSELTAV-APLKDK----KRKNVFAI 71

Query: 127 YCTDGSEFLFLAPSETLMEDWVNKI 151
           Y T    + F A SE    +WV  I
Sbjct: 72  Y-TPSKNYHFQASSEKDANEWVEAI 95

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 12/106 (11%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-----LLCFFKDQDDFVASKAATSPIII 106
           +G L +  E  S     A++S+K  +  L        +L F+KD+      K+  +   I
Sbjct: 9   EGYLYKGPENSSMFISLAMKSFKRRFFHLKQLVDGSYILEFYKDE------KSKEAKGTI 62

Query: 107 FKARCEKAGDYTK-RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
           +   C      +K RK  F L   DG  ++  A SE+ M+DW++K+
Sbjct: 63  YLDSCTGVVQNSKRRKFCFELRMQDGKSYVLAAESESEMDDWISKL 108

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 70  VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIFKARCEKAG-DYTKRK-HVFRL 126
           V++WK+ + VL    L +FK + D       T PI  +    C     DY++ K + FRL
Sbjct: 16  VKNWKTRWFVLRKNELKYFKTRTD-------TKPIRTLDLTECSSVQADYSQGKPNCFRL 68

Query: 127 YCTDGSEFLFLAPSETLMEDWVNKIS 152
                  F   A +E   ++WV  + 
Sbjct: 69  -VFPDRTFYMYAKTEEEADEWVKLLK 93

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 22/99 (22%)

Query: 67  KAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA------ATSPIIIFKARCEKAGDYTKR 120
              V++W+  + VL G  L ++KD+D+   SK         + +       E+ G     
Sbjct: 13  GGIVKNWQRRWFVLRGDQLYYYKDEDE---SKPQGCIPLPGNTVKELPFNPEEPG----- 64

Query: 121 KHVFRLYCTDGSE--------FLFLAPSETLMEDWVNKI 151
           K +F +   DG          +L +A S+  ME+WV  I
Sbjct: 65  KFLFEIIPGDGGTRRSANHDSYLLMANSQAEMEEWVKVI 103

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 70  VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC---EKAGDYTKRKHVFRL 126
           +++W+  + VL    L +FKD+D    S+      +I  + C   + A + T ++  F +
Sbjct: 20  IKTWRRRWFVLKQGKLFYFKDEDPD--SEPRG---VIDLSDCLTVKSAEEATNKEFAFEV 74

Query: 127 YCTDGSEFLFLAPSETLMEDWVNKI 151
              + + F  +A SE   E+W++ I
Sbjct: 75  STPERT-FYLIADSEKEKEEWISAI 98

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 20/95 (21%)

Query: 66  KKAAVR-SWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--------D 116
           KK  V  +WK+ + VL    L ++K        K  +SP    K      G        +
Sbjct: 11  KKGHVVNNWKARWFVLLEDKLEYYK-------KKTDSSP----KGMILLKGCTITSPCLE 59

Query: 117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
           Y KR  VF+L    G +    A S    + W   I
Sbjct: 60  YEKRPLVFKLTTAKGQDHFLQACSREERDAWAKDI 94

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.94
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.94
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.9
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.79
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.75
KOG0932|consensus	774		99.73
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.69
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.69
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.69
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.68
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.67
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.67
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.67
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.66
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.65
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.63
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.62
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.6
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.6
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.56
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.51
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.49
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.48
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.44
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.37
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.33
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.26
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.25
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.23
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.07
PF15409	89	PH_8: Pleckstrin homology domain	99.07
KOG0930|consensus	395		99.01
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.91
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	98.86
KOG4407|consensus	1973		98.81
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.64
KOG0517|consensus	2473		98.63
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.57
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.45
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.39
KOG0690|consensus	516		98.37
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.36
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	98.27
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.25
KOG3640|consensus	1116		98.24
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	98.24
PTZ00267	478	NIMA-related protein kinase; Provisional	98.11
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.01
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.95
KOG2059|consensus	800		97.94
KOG1451|consensus	812		97.76
KOG1090|consensus	1732		97.68
KOG3751|consensus	622		97.59
PTZ00283	496	serine/threonine protein kinase; Provisional	97.56
KOG0521|consensus	785		97.54
KOG3531|consensus	1036		97.38
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.14
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	97.08
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	97.04
PLN02866	1068	phospholipase D	96.99
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	96.97
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	96.92
KOG1117|consensus	1186		96.84
KOG3723|consensus	851		96.64
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	96.52
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	96.2
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	96.0
PF15408	104	PH_7: Pleckstrin homology domain	95.94
KOG1738|consensus	638		95.92
KOG3549|consensus	505		95.8
KOG1117|consensus	1186		95.71
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	95.68
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	95.55
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	95.5
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	95.27
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	95.2
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	95.19
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	95.18
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	95.05
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	95.03
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	95.0
PF15406	112	PH_6: Pleckstrin homology domain	94.91
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	94.9
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	94.78
KOG0248|consensus	936		94.57
KOG3523|consensus	695		94.35
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	94.26
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	94.19
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	93.99
KOG4424|consensus	623		93.83
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	93.76
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	93.7
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	93.46
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	93.2
KOG3543|consensus	1218		92.94
KOG2070|consensus	661		92.92
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	92.64
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	92.37
KOG1739|consensus	611		92.23
PF15411	116	PH_10: Pleckstrin homology domain	92.02
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	91.8
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	91.78
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	91.68
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	91.44
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	91.29
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	91.2
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	91.05
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	90.99
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	90.53
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	89.65
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	89.13
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	88.66
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	88.56
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	88.51
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	88.37
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	88.26
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	87.78
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	87.75
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	87.61
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	87.27
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	87.22
PF15404	185	PH_4: Pleckstrin homology domain	85.57
KOG4269|consensus	1112		82.77
KOG1737|consensus	799		82.16
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	81.61
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	81.4
KOG1264|consensus	1267		81.19
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	81.07

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.94  E-value=3.9e-27  Score=198.59  Aligned_cols=107  Identities=50%  Similarity=0.800  Sum_probs=82.8

Q ss_pred             EEEEEEeeeeeeccCCccc--cccCCceEEEEEeCCeEeEEecCchhhccc----------CCCccEEecccEEEecCCC
Q psy10626         50 EIQGVLERKHELQSGGKKA--AVRSWKSLYTVLCGQLLCFFKDQDDFVASK----------AATSPIIIFKARCEKAGDY  117 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs--~~RsWKkrwfVLrG~~L~fYKDeke~a~~~----------a~~~~IsL~ga~v~ia~dy  117 (344)
                      +|+|||.||++++.+|||.  ..|+|+.+|+||+|+.|+||||+.......          .+...|+|.+|.|+++.||
T Consensus         1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY   80 (119)
T PF15410_consen    1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY   80 (119)
T ss_dssp             --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred             CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence            4899999999999999999  799999999999999999999966533221          1234599999999999999


Q ss_pred             CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +||+|||+|+++||.+|||||.|++||++||.+||.+|+
T Consensus        81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~AA  119 (119)
T PF15410_consen   81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAAA  119 (119)
T ss_dssp             TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH--
T ss_pred             ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhcC
Confidence            999999999999999999999999999999999999885

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.94  E-value=2.4e-26  Score=195.13  Aligned_cols=108  Identities=34%  Similarity=0.518  Sum_probs=98.2

Q ss_pred             EEEEEEeeeeeeccCCcccc--ccCCceEEEEEeCCeEeEEecCchhhccc---CCCccEEecccEEEecCCCCCCcceE
Q psy10626         50 EIQGVLERKHELQSGGKKAA--VRSWKSLYTVLCGQLLCFFKDQDDFVASK---AATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~--~RsWKkrwfVLrG~~L~fYKDeke~a~~~---a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      +|+|+|.||++++.+|||+.  .|.|+++||||+|+.|+||||+.....+.   ....+|.|.+++|+++.+|.||+|||
T Consensus         1 ~~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF   80 (117)
T cd01230           1 YKHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVF   80 (117)
T ss_pred             CCCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEE
Confidence            47999999999999999986  79999999999999999999997543332   23578999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      +|.+++|.+|||||.|++||+.||.+|+.+|++
T Consensus        81 ~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~  113 (117)
T cd01230          81 RLRTADWREFLFQTSSLKELQSWIERINVVAAA  113 (117)
T ss_pred             EEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999864

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.90  E-value=2.4e-23  Score=169.35  Aligned_cols=104  Identities=52%  Similarity=0.894  Sum_probs=92.0

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      ++|+|.||++++.+|++...+.|+++||||+|+.|+||+|+...........+|+|.++.++++.++.+++|+|+|.+++
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~   80 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPD   80 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecC
Confidence            47999999999999999999999999999999999999998754322222348899999999988888999999999999


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +.+|+|+|+|++||++||.+|+.|
T Consensus        81 ~~~~~f~a~s~e~~~~Wi~aL~~~  104 (104)
T cd01253          81 GAEFLFQAPDEEEMSSWVRALKSA  104 (104)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC
Confidence            999999999999999999999854

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.79  E-value=6.7e-19  Score=141.33  Aligned_cols=95  Identities=24%  Similarity=0.393  Sum_probs=79.1

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      ++|||.+|..  .+|  ...+.|+++||||+++.|++|+++.+..    +.+.|.|.++.+..+.+ .+++++|+|.+++
T Consensus         2 ~~GwL~kk~~--~~g--~~~k~WkkrwfvL~~~~L~yyk~~~~~~----~~~~I~L~~~~v~~~~~-~~k~~~F~I~~~~   72 (96)
T cd01260           2 CDGWLWKRKK--PGG--FMGQKWARRWFVLKGTTLYWYRSKQDEK----AEGLIFLSGFTIESAKE-VKKKYAFKVCHPV   72 (96)
T ss_pred             ceeEEEEecC--CCC--ccccCceeEEEEEECCEEEEECCCCCCc----cceEEEccCCEEEEchh-cCCceEEEECCCC
Confidence            6899997652  111  1478999999999999999999987643    47889999988876544 4588999999998


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .+.|+|+|+|++||++||.+|+.|
T Consensus        73 ~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          73 YKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHhC
Confidence            899999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.75  E-value=8.3e-18  Score=137.47  Aligned_cols=94  Identities=24%  Similarity=0.376  Sum_probs=77.3

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC---CCCcceEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY---TKRKHVFR  125 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy---~KRKnVFr  125 (344)
                      |.|+|||.+|..        ..+.|++|||||+++.|++|+++.+..    +.+.|+|..+.+....+.   .+++|+|.
T Consensus         2 v~k~G~L~Kkg~--------~~k~WkkRwfvL~~~~L~yyk~~~~~~----~~~~I~L~~~~v~~~~~~~~~~~~~~~F~   69 (100)
T cd01233           2 VSKKGYLNFPEE--------TNSGWTRRFVVVRRPYLHIYRSDKDPV----ERGVINLSTARVEHSEDQAAMVKGPNTFA   69 (100)
T ss_pred             cceeEEEEeeCC--------CCCCcEEEEEEEECCEEEEEccCCCcc----EeeEEEecccEEEEccchhhhcCCCcEEE
Confidence            679999986541        358999999999999999999987643    367899998877655442   24789999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.+++ +.|+|+|+|++||++||.+|+...
T Consensus        70 I~t~~-rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          70 VCTKH-RGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             EECCC-CEEEEEcCCHHHHHHHHHHhhhhh
Confidence            99886 899999999999999999998543

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>KOG0932|consensus

Probab=99.73  E-value=1.2e-18  Score=178.41  Aligned_cols=114  Identities=33%  Similarity=0.515  Sum_probs=101.3

Q ss_pred             cCCCCCeEEEEEEeeeeeeccCCcccc--ccCCceEEEEEeCCeEeEEecCchhhccc---CCCccEEecccEEEecCCC
Q psy10626         43 LDQLPPVEIQGVLERKHELQSGGKKAA--VRSWKSLYTVLCGQLLCFFKDQDDFVASK---AATSPIIIFKARCEKAGDY  117 (344)
Q Consensus        43 ~d~l~~V~KeGwL~RKq~lesgGKKs~--~RsWKkrwfVLrG~~L~fYKDeke~a~~~---a~~~~IsL~ga~v~ia~dy  117 (344)
                      .|....++|.|+|.||.+.+..|||..  .|.||..|.||+|..|||-||+....+..   ...+.|.|+|+.+..+.||
T Consensus       500 ~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY  579 (774)
T KOG0932|consen  500 PDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDY  579 (774)
T ss_pred             CCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCccc
Confidence            355678999999999999999999885  68999999999999999999986543321   2356799999999999999


Q ss_pred             CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +||.|||+|++.|+++|||||.+.+||+.||..||.+|+
T Consensus       580 ~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA  618 (774)
T KOG0932|consen  580 SKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA  618 (774)
T ss_pred             ccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.69  E-value=2.3e-16  Score=122.81  Aligned_cols=91  Identities=18%  Similarity=0.350  Sum_probs=74.5

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      ++|||.++.        ...+.|+++||||+++.|+||+++....  ..+.+.|.|.++.+...   ..++++|+|.+++
T Consensus         1 ~~G~L~k~~--------~~~~~W~~r~~vl~~~~L~~~~~~~~~~--~~~~~~i~l~~~~~~~~---~~~~~~F~i~~~~   67 (91)
T cd01246           1 VEGWLLKWT--------NYLKGWQKRWFVLDNGLLSYYKNKSSMR--GKPRGTILLSGAVISED---DSDDKCFTIDTGG   67 (91)
T ss_pred             CeEEEEEec--------ccCCCceeeEEEEECCEEEEEecCccCC--CCceEEEEeceEEEEEC---CCCCcEEEEEcCC
Confidence            489998654        2358999999999999999999997641  12367789988876553   2347999999999


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +..|+|+|++.+|+++||.+|+.|
T Consensus        68 ~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          68 DKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhC
Confidence            999999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.69  E-value=2e-16  Score=123.90  Aligned_cols=93  Identities=23%  Similarity=0.400  Sum_probs=74.5

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      |+|||.+|..       ...+.|+++||||+++.|++|+++.+..  ......|+|..+.+....+...++++|.|.+++
T Consensus         1 k~G~L~kk~~-------~~~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~   71 (94)
T cd01250           1 KQGYLYKRSS-------KSNKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT   71 (94)
T ss_pred             CcceEEEECC-------CcCCCceEEEEEEeCCeEEEEcCCcccc--cccceEEeccceEEecCccccCCceEEEEEcCC
Confidence            5899986541       1267899999999999999999987531  123467888877776655444478999999998


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHH
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                       ..|+|+|++++||++||.||+.
T Consensus        72 -~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          72 -KTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             -cEEEEECCCHHHHHHHHHHHhc
Confidence             8999999999999999999974

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.69  E-value=2.6e-16  Score=132.93  Aligned_cols=94  Identities=19%  Similarity=0.395  Sum_probs=77.8

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeC
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT  129 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tp  129 (344)
                      .|+|||.++.        ...+.|+++||||+++.|+||+++.+..    +.+.|.|.++.+....+ ..++++|+|.++
T Consensus         1 ~k~G~L~K~~--------~~~~~WkkRwfvL~~~~L~yyk~~~~~~----~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~   67 (125)
T cd01252           1 DREGWLLKQG--------GRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENVSIREVED-PSKPFCFELFSP   67 (125)
T ss_pred             CcEEEEEEeC--------CCCCCeEeEEEEEECCEEEEEcCCCCCC----ceEEEECCCcEEEEccc-CCCCeeEEEECC
Confidence            3789998543        2368999999999999999999877543    47889999887766543 467899999987


Q ss_pred             CC--------------------cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        130 DG--------------------SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       130 dg--------------------~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++                    ..|+|+|++++||++||.+|+.+..
T Consensus        68 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~  114 (125)
T cd01252          68 SDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS  114 (125)
T ss_pred             ccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            75                    6899999999999999999998765

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.68  E-value=3e-16  Score=130.24  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=75.8

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC------eEeEEecCchhhcc-cCCCccEEecccEEEecCCCCCC
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ------LLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTKR  120 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~------~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~KR  120 (344)
                      +|.++|||. |+           ++|++|||||+++      .|.+|++++.+... ..+.+.|+|..|.........++
T Consensus         1 ~v~k~GyL~-K~-----------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~   68 (101)
T cd01257           1 DVRKSGYLR-KQ-----------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKH   68 (101)
T ss_pred             CccEEEEEe-Ee-----------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecccccc
Confidence            488999997 43           7999999999987      79999999864321 23578999999875433333566


Q ss_pred             cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626        121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      +|+|.|.+++ +.|+|+|++++||++||.+|..
T Consensus        69 ~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          69 RHLIALYTRD-EYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             CeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhh
Confidence            7999999998 7999999999999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.67  E-value=4.7e-16  Score=128.21  Aligned_cols=94  Identities=18%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE----EEe--cCC-CCCCcce
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR----CEK--AGD-YTKRKHV  123 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~----v~i--a~d-y~KRKnV  123 (344)
                      |+|||.++..     +  ..++|++|||||+++.|+||++..+..    +.+.|+|..+.    +..  ..+ ..++.++
T Consensus         1 KeG~L~K~g~-----~--~~k~wkkRwFvL~~~~L~Yyk~~~d~~----~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~   69 (103)
T cd01251           1 KEGFMEKTGP-----K--HTEGFKKRWFTLDDRRLMYFKDPLDAF----AKGEVFLGSQEDGYEVREGLPPGTQGNHWYG   69 (103)
T ss_pred             CceeEEecCC-----C--CCCCceeEEEEEeCCEEEEECCCCCcC----cCcEEEeeccccceeEeccCCccccccccce
Confidence            6899985431     1  258899999999999999999987643    36788886432    321  112 1223459


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.|.+++ ++|+|+|+|++||++||++|+.+..
T Consensus        70 F~i~t~~-Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          70 VTLVTPE-RKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             EEEEeCC-eEEEEECCCHHHHHHHHHHHHHHhc
Confidence            9999985 8999999999999999999998764

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.67  E-value=4.4e-16  Score=126.56  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=72.0

Q ss_pred             EEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeC
Q psy10626         52 QGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT  129 (344)
Q Consensus        52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tp  129 (344)
                      +|||.+..      .+...++|+++||||+  ++.|+||+++.+..    +.+.|+|.++.+....+  .++++|.|.++
T Consensus         2 ~GyL~K~g------~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~----p~G~I~L~~~~~~~~~~--~~~~~F~i~t~   69 (95)
T cd01265           2 CGYLHKIE------GKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK----PLGRVDLSGAAFTYDPR--EEKGRFEIHSN   69 (95)
T ss_pred             cccEEEec------CCCCCcCceeEEEEEcCCCcEEEEECCCCccc----ccceEECCccEEEcCCC--CCCCEEEEEcC
Confidence            69998432      1234789999999998  46899999987643    47899999876654333  24789999987


Q ss_pred             CCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        130 DGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       130 dg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      + ++|+|+|+|++||++||++|+.+
T Consensus        70 ~-r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          70 N-EVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             C-cEEEEECCCHHHHHHHHHHHHhh
Confidence            5 89999999999999999999864

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.67  E-value=1.3e-15  Score=117.88  Aligned_cols=98  Identities=24%  Similarity=0.408  Sum_probs=82.2

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC-----CCCcce
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-----TKRKHV  123 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-----~KRKnV  123 (344)
                      +.++|||.++.        ...+.|+++||||.++.|++|++.... ....+...|+|.++.+....+.     .+.+|+
T Consensus         1 ~~~~G~L~~~~--------~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~   71 (104)
T PF00169_consen    1 CIKEGWLLKKS--------SSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNC   71 (104)
T ss_dssp             EEEEEEEEEEE--------SSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSE
T ss_pred             CEEEEEEEEEC--------CCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcE
Confidence            57899999664        247899999999999999999998741 1123467899999887766554     578999


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.|.++++..|+|+|+|++|+..||.+|+.+.
T Consensus        72 f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   72 FEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             EEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            99999998999999999999999999999775

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.66  E-value=5.2e-16  Score=129.15  Aligned_cols=95  Identities=25%  Similarity=0.433  Sum_probs=74.2

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC-CC---CCcceEEE
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD-YT---KRKHVFRL  126 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d-y~---KRKnVFrL  126 (344)
                      .+|||..++     |+=-..++|++|||||+|+.|+|||+.....+   ..+.|+|..|......+ ..   .++++|+|
T Consensus         2 ~~G~l~k~~-----g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~---~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei   73 (101)
T cd01264           2 IEGQLKEKK-----GRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP---DDCSIDLSKIRSVKAVAKKRRDRSLPKAFEI   73 (101)
T ss_pred             cceEEeecC-----ccceeeecceeEEEEEeCCEEEEEeccCccCC---CCceEEcccceEEeeccccccccccCcEEEE
Confidence            589997553     22114799999999999999999998865432   24789999887443332 22   23699999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .+++ ++|+|+|+|++|+++||++|+.|
T Consensus        74 ~tp~-rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          74 FTAD-KTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             EcCC-ceEEEEeCCHHHHHHHHHHHHhh
Confidence            9998 89999999999999999999865

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.65  E-value=9.5e-16  Score=127.00  Aligned_cols=97  Identities=19%  Similarity=0.340  Sum_probs=74.5

Q ss_pred             EEEEEEeeeeeeccCCcc-ccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEE-EecCCCC------CCc
Q psy10626         50 EIQGVLERKHELQSGGKK-AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC-EKAGDYT------KRK  121 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKK-s~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v-~ia~dy~------KRK  121 (344)
                      .++|+|.++.    .|++ ...++|++|||||+++.|+||+++.+..  ..+.+.|+|.++.+ +.+.+..      +++
T Consensus         1 ~k~g~l~Kr~----~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~   74 (106)
T cd01238           1 ILESILVKRS----QQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GSKKGSIDLSKIKCVETVKPEKNPPIPERFK   74 (106)
T ss_pred             Ccceeeeeec----cCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cCcceeEECCcceEEEEecCCcCcccccccC
Confidence            3789999663    2333 3567999999999999999999886531  12478899987653 3333322      468


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      ++|+|.+++ +.|+|+|+|++|+++||.+|+.
T Consensus        75 ~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          75 YPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             ccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence            999999986 6888999999999999999985

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.63  E-value=3e-15  Score=121.35  Aligned_cols=90  Identities=17%  Similarity=0.292  Sum_probs=73.5

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      .+|||.+..        ...++|++|||||+++.|+||+++.+...  ...+.|+|.+|.+... +  .+++.|.|.+.+
T Consensus         1 ~~G~L~K~~--------~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~~~G~I~L~~~~i~~~-~--~~~~~F~i~~~~   67 (91)
T cd01247           1 TNGVLSKWT--------NYINGWQDRYFVLKEGNLSYYKSEAEKSH--GCRGSIFLKKAIIAAH-E--FDENRFDISVNE   67 (91)
T ss_pred             CceEEEEec--------cccCCCceEEEEEECCEEEEEecCccCcC--CCcEEEECcccEEEcC-C--CCCCEEEEEeCC
Confidence            379998554        24799999999999999999999876321  3468899998865532 2  346899998888


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHH
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      +++|+|.|+|++|+++||++|+.
T Consensus        68 ~r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          68 NVVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             CeEEEEEeCCHHHHHHHHHHHhh
Confidence            89999999999999999999985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.62  E-value=3e-15  Score=125.01  Aligned_cols=93  Identities=17%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             EEEEEeeeeeeccCCcc-----ccccCCceEEEEEe-CCeEeEEecCc-hhhcccCCCccEEecccEEEec-CCCCCCcc
Q psy10626         51 IQGVLERKHELQSGGKK-----AAVRSWKSLYTVLC-GQLLCFFKDQD-DFVASKAATSPIIIFKARCEKA-GDYTKRKH  122 (344)
Q Consensus        51 KeGwL~RKq~lesgGKK-----s~~RsWKkrwfVLr-G~~L~fYKDek-e~a~~~a~~~~IsL~ga~v~ia-~dy~KRKn  122 (344)
                      ++|||.++.    +|+.     ...++|++|||||+ ++.|+||+|.. +..    +.+.|+|..|..... .+...++|
T Consensus         1 ~~g~l~~~~----~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~----p~G~IdL~~~~~V~~~~~~~~~~~   72 (104)
T cd01236           1 YCGWLLVAP----DGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL----PQGTIDMNQCTDVVDAEARTGQKF   72 (104)
T ss_pred             CcceeEEcC----CCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc----cceEEEccceEEEeecccccCCcc
Confidence            479998553    4443     24799999999998 67888888774 332    478899987764433 34455679


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHH
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKIS  152 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr  152 (344)
                      +|.|.+++ ++|+|.|++++||++||++|+
T Consensus        73 ~f~I~tp~-R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          73 SICILTPD-KEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             EEEEECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence            99999997 899999999999999999996

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.60  E-value=1e-14  Score=117.01  Aligned_cols=91  Identities=25%  Similarity=0.366  Sum_probs=69.6

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeC--CeEeEEecCchhhcccCCCccEEecccEEE-ecCC------CCCCc
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCG--QLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGD------YTKRK  121 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG--~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~d------y~KRK  121 (344)
                      .+|||.++.        ...++|++|||||.+  +.|+||+++.+..    +.+.|+|..+... ...+      ...+.
T Consensus         1 ~~G~L~K~g--------~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~----~~g~I~L~~~~~v~~~~~~~~~~~~~~~~   68 (101)
T cd01235           1 CEGYLYKRG--------ALLKGWKPRWFVLDPDKHQLRYYDDFEDTA----EKGCIDLAEVKSVNLAQPGMGAPKHTSRK   68 (101)
T ss_pred             CeEEEEEcC--------CCCCCccceEEEEECCCCEEEEecCCCCCc----cceEEEcceeEEEeecCCCCCCCCCCCCc
Confidence            379998653        247899999999994  5999999886543    4688999875432 2111      12456


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      ++|.|.+. .+.|+|+|++++||++||.+|+.+
T Consensus        69 ~~f~i~t~-~r~~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          69 GFFDLKTS-KRTYNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             eEEEEEeC-CceEEEECCCHHHHHHHHHHHHhh
Confidence            78998875 489999999999999999999865

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.60  E-value=5.5e-15  Score=122.25  Aligned_cols=95  Identities=20%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCe-------EeEEecCchhhcccCCCccEEecccEEEec-----CCCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQL-------LCFFKDQDDFVASKAATSPIIIFKARCEKA-----GDYT  118 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~-------L~fYKDeke~a~~~a~~~~IsL~ga~v~ia-----~dy~  118 (344)
                      .+|||.++...    .+...++|++|||||+++.       |+||+++.+..    +.+.|+|..+.+...     ....
T Consensus         1 ~eGwL~K~~~~----~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k----~~g~I~L~~~~~v~~~~~~~~~~~   72 (108)
T cd01266           1 LEGWLKKSPPY----KLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK----LEFVIDLESCSQVDPGLLCTAGNC   72 (108)
T ss_pred             CceeeeeCCcc----ccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc----cceEEECCccEEEcccccccccCc
Confidence            37999854311    1224579999999999876       59999987543    478999998654321     1123


Q ss_pred             CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +..++|.|.+++ ++|+|+|+|++||++||++|+..
T Consensus        73 ~~~~~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          73 IFGYGFDIETIV-RDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             ccceEEEEEeCC-ccEEEEECCHHHHHHHHHHHHhh
Confidence            456789999875 89999999999999999999865

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.56  E-value=2.9e-14  Score=117.23  Aligned_cols=97  Identities=19%  Similarity=0.294  Sum_probs=65.3

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhcc-cCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      |.|+|||.+++        ...+.|++|||||+ ++.|++|+++...... .-+...+.|.+|.+..  ....+.+.|.|
T Consensus         1 v~k~G~L~K~g--------~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~~~~F~i   70 (102)
T cd01241           1 VVKEGWLHKRG--------EYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMK--TERPRPNTFII   70 (102)
T ss_pred             CcEEEEEEeec--------CCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeee--ccCCCcceEEE
Confidence            56999998654        25799999999999 7889989887643220 1112223333333322  22456799999


Q ss_pred             EeCC-C--cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        127 YCTD-G--SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       127 ~tpd-g--~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ...+ .  ..-.|+|++++||++||.+|+.++
T Consensus        71 ~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v~  102 (102)
T cd01241          71 RCLQWTTVIERTFHVESPEEREEWIHAIQTVA  102 (102)
T ss_pred             EeccCCcccCEEEEeCCHHHHHHHHHHHHhhC
Confidence            8433 1  223678999999999999998653

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.51  E-value=6.6e-14  Score=120.13  Aligned_cols=99  Identities=20%  Similarity=0.320  Sum_probs=75.6

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec----CCCCCCcceE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA----GDYTKRKHVF  124 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia----~dy~KRKnVF  124 (344)
                      |...|||...+..      ...++|+++||||+|+.|+||+...+. ....+.+.|+|.+|.+...    .+...|+|.|
T Consensus         1 ~~~~GfL~~~q~~------~~~k~W~RRWFvL~g~~L~y~k~p~d~-~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF   73 (122)
T cd01263           1 VEYHGFLTMFEDT------SGFGAWHRRWCALEGGEIKYWKYPDDE-KRKGPTGLIDLSTCTSSEGASAVRDICARPNTF   73 (122)
T ss_pred             CccceeEEEEecc------CCCCCceEEEEEEeCCEEEEEcCCCcc-ccCCceEEEEhhhCcccccccCChhhcCCCCeE
Confidence            4567999876643      257999999999999999999966652 1234678899998775422    2568899999


Q ss_pred             EEEeCC----------------C---cEEEEECCCHHHHHHHHHHHHHh
Q psy10626        125 RLYCTD----------------G---SEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       125 rL~tpd----------------g---~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .|....                .   .-|+|+|++.+|+++||.+|+.+
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          74 HLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             EEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence            997531                1   12899999999999999999853

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.49  E-value=2.2e-13  Score=112.56  Aligned_cols=84  Identities=15%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             CCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcceEEEEeCCCcEEEEECCCH
Q psy10626         64 GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHVFRLYCTDGSEFLFLAPSE  141 (344)
Q Consensus        64 gGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnVFrL~tpdg~eyLFqAeSe  141 (344)
                      +|++.. ++|++|||+|++..|+||++...     .+.+.|+|....+....  +...++|+|+|.+++ ..|+|+|+++
T Consensus        13 ~~~~~~-~n~KkRwF~Lt~~~L~Y~k~~~~-----~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~   85 (98)
T cd01244          13 LAWKKV-LHFKKRYFQLTTTHLSWAKDVQC-----KKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAP   85 (98)
T ss_pred             CCCccC-cCCceeEEEECCCEEEEECCCCC-----ceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCH
Confidence            344544 89999999999999999998763     24788999876554322  234567999999997 6999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy10626        142 TLMEDWVNKISFH  154 (344)
Q Consensus       142 eEM~eWI~AIr~a  154 (344)
                      +|+++||.+|+.+
T Consensus        86 ~E~~~Wi~al~k~   98 (98)
T cd01244          86 VEATDWLNALEKQ   98 (98)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999853

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00233 PH Pleckstrin homology domain

Probab=99.48  E-value=9.6e-13  Score=99.36  Aligned_cols=98  Identities=26%  Similarity=0.379  Sum_probs=78.8

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCC--CCcceEEEE
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYT--KRKHVFRLY  127 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~--KRKnVFrL~  127 (344)
                      .++|||.++..       .....|+++||+|.++.|++|++..... .......|+|.++.+....+..  ..+++|.|.
T Consensus         2 ~~~G~l~~~~~-------~~~~~~~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~   73 (102)
T smart00233        2 IKEGWLYKKSG-------GKKKSWKKRYFVLFNSTLLYYKSEKAKK-DYKPKGSIDLSGITVREAPDPDSAKKPHCFEIK   73 (102)
T ss_pred             ceeEEEEEeCC-------CccCCceEEEEEEECCEEEEEeCCCccc-cCCCceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence            58999986541       1467899999999999999999886521 1234678899988776554432  568999999


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +.++..|+|+|++++|++.|+.+|+.++
T Consensus        74 ~~~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       74 TADRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             ecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            9998899999999999999999999775

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.44  E-value=3.8e-13  Score=111.45  Aligned_cols=90  Identities=17%  Similarity=0.229  Sum_probs=72.1

Q ss_pred             EEEEeeeeeeccCCccccccCCceEEEEEeC----CeEeEEecCchhhcccCCCccEEecccEEEecCCC-CCCcceEEE
Q psy10626         52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCG----QLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-TKRKHVFRL  126 (344)
Q Consensus        52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG----~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-~KRKnVFrL  126 (344)
                      .|||.++.      + ...+.|+++||+|.+    ++|+||++..+..+    .+.|+|..+.|....+. ..|+|+|+|
T Consensus         2 ~G~l~K~g------~-~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p----~gli~l~~~~V~~v~ds~~~r~~cFel   70 (98)
T cd01245           2 KGNLLKRT------K-SVTKLWKTLYFALILDGSRSHESLLSSPKKTKP----IGLIDLSDAYLYPVHDSLFGRPNCFQI   70 (98)
T ss_pred             CCccccCC------C-CcccccceeEEEEecCCCCceEEEEcCCCCCCc----cceeeccccEEEEccccccCCCeEEEE
Confidence            57886332      1 227999999999987    99999999887543    67888888866654443 567899999


Q ss_pred             EeCCC-cEEEEECCCHHHHHHHHHHHHH
Q psy10626        127 YCTDG-SEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       127 ~tpdg-~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      .++++ ..|+++|++ +|+++||++|+.
T Consensus        71 ~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          71 VERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             ecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            99886 799999999 999999999974

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.37  E-value=4.5e-12  Score=94.97  Aligned_cols=96  Identities=27%  Similarity=0.447  Sum_probs=76.2

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      ++|||.++..       .....|+++||+|.++.|++|++..... .......|+|.++.+....+..+..++|.|.+.+
T Consensus         1 ~~G~l~~~~~-------~~~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~   72 (96)
T cd00821           1 KEGYLLKKTG-------KLRKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPD   72 (96)
T ss_pred             CcchhhhhhC-------hhhCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECCCcCCCCcEEEEecCC
Confidence            4799986541       0147899999999999999998876521 1124678999987777665555678999999998


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +..|+|+|+|++|++.|+.+|+.+
T Consensus        73 ~~~~~~~~~s~~~~~~W~~~l~~~   96 (96)
T cd00821          73 GRSYLLQAESEEEREEWIEALQSA   96 (96)
T ss_pred             CcEEEEEeCCHHHHHHHHHHHhcC
Confidence            899999999999999999999753

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.33  E-value=6.9e-12  Score=105.53  Aligned_cols=89  Identities=12%  Similarity=0.263  Sum_probs=69.0

Q ss_pred             ccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC---CcEEEEECCCHH
Q psy10626         66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD---GSEFLFLAPSET  142 (344)
Q Consensus        66 KKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd---g~eyLFqAeSee  142 (344)
                      +|...+.|+++||+|+++.|+|||+..+...  .+...|.|.+|.+..+..-.++++.|+|.++.   .++|.|.|+|++
T Consensus        13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~--~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEe   90 (106)
T cd01237          13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSNG--APIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEK   90 (106)
T ss_pred             chhhhhhheeEEEEEeCCEEEEEccchhcCC--CCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHH
Confidence            3556889999999999999999999876432  23344556676665544335678999998653   369999999999


Q ss_pred             HHHHHHHHHHHhhC
Q psy10626        143 LMEDWVNKISFHAQ  156 (344)
Q Consensus       143 EM~eWI~AIr~aaa  156 (344)
                      ++..||.+++.|+.
T Consensus        91 qya~Wmaa~rlas~  104 (106)
T cd01237          91 QYAKWMAACRLASK  104 (106)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998874

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.26  E-value=8.2e-11  Score=88.83  Aligned_cols=95  Identities=21%  Similarity=0.319  Sum_probs=72.9

Q ss_pred             EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCC-ccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAAT-SPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~-~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      +|||.++...    .......|+++||+|.++.|++|+++.....    . ..+.|.+..|....+....+++|.|.+.+
T Consensus         2 ~g~l~~~~~~----~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~----~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~   73 (99)
T cd00900           2 EGYLLKLGSD----DVSKGKRWKRRWFFLFDDGLLLYKSDDKKEI----KPGSIPLSEISVEEDPDGSDDPNCFAIVTKD   73 (99)
T ss_pred             ccEEEEeCCC----ccccccCceeeEEEEECCEEEEEEcCCCCcC----CCCEEEccceEEEECCCCCCCCceEEEECCC
Confidence            6889765421    0112478999999999999999998876432    2 45777776665544433578999999996


Q ss_pred             --CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        131 --GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       131 --g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                        ...|+|+|++++|++.|+.+|+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          74 RGRRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence              899999999999999999999754

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.25  E-value=5.1e-11  Score=101.16  Aligned_cols=95  Identities=16%  Similarity=0.376  Sum_probs=69.8

Q ss_pred             EEEEEeeeeeeccCCcccc--------------ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-ccEEEecC
Q psy10626         51 IQGVLERKHELQSGGKKAA--------------VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF-KARCEKAG  115 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~--------------~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~-ga~v~ia~  115 (344)
                      |||||.+|.    +|++..              ...|+++||||+++.|.||++..+..+    .+.|.+. +..+....
T Consensus         1 keG~i~kr~----g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~----~~vil~D~~f~v~~~~   72 (121)
T cd01254           1 KEGYIMKRS----GGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQI----LDVILFDVDFKVNGGG   72 (121)
T ss_pred             CCceEEeCC----CCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCce----eeEEEEcCCccEEeCC
Confidence            589998664    333332              237999999999999999998877432    4455554 23233211


Q ss_pred             -----------CCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        116 -----------DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       116 -----------dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                                 +...+.|.|.|.+++ +.|.|.|+|+.++++||++|+.|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~i~t~~-R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          73 KEDISLAVELKDITGLRHGLKITNSN-RSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             cccccccccccccCCCceEEEEEcCC-cEEEEEeCCHHHHHHHHHHHHhC
Confidence                       224567999999987 89999999999999999999864

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.23  E-value=1.1e-10  Score=95.99  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-cCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      ..++|||.+.+        ...+.|+.|||+|-++.|.+++........ ....+.|+|.++.+... +....+|.|.|.
T Consensus         2 ~ikeG~L~K~~--------~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~-~~~~~~~~F~I~   72 (101)
T cd01219           2 LLKEGSVLKIS--------STTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG-DNLERPHSFLVS   72 (101)
T ss_pred             cccceEEEEEe--------cCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC-CCCCcCceEEEe
Confidence            46899998433        235789999999999999999865321110 11234578888766532 335578999999


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ..+ +.|.|+|+|++|+++||.+|+.++
T Consensus        73 ~~~-rsf~l~A~s~eEk~~W~~ai~~~i   99 (101)
T cd01219          73 GKQ-RCLELQARTQKEKNDWVQAIFSII   99 (101)
T ss_pred             cCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            887 899999999999999999999875

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.07  E-value=8.7e-10  Score=92.47  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhccc----C-----CCccEE--ecccEEE-e---c
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVASK----A-----ATSPII--IFKARCE-K---A  114 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~~----a-----~~~~Is--L~ga~v~-i---a  114 (344)
                      |+|||+++..      + ..+.|++|||+|. ++.|.|||.........    .     ..+.+.  ....... +   .
T Consensus         1 k~G~l~K~~~------~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (112)
T PF15413_consen    1 KEGYLYKWGN------K-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKN   73 (112)
T ss_dssp             EEEEEEE--T------T-S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T
T ss_pred             CCceEEEecC------C-CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCC
Confidence            6899996541      1 2689999999999 99999999933321100    0     011111  1111111 1   1


Q ss_pred             CCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        115 GDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       115 ~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      ........+|.|.|++ ++|+|.|++.+|..+||.+|+.|
T Consensus        74 ~~~~~~~~~~~i~T~~-kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   74 PFGEIHLKVFSIFTPT-KTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             --SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred             cccCcCCCCcEEECCC-cEEEEEECCHHHHHHHHHHHHhC
Confidence            1113345788998887 69999999999999999999865

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.07  E-value=9.7e-10  Score=89.95  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=67.8

Q ss_pred             EEEeeeeeeccCCccccccCCceEEEEE--eCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         53 GVLERKHELQSGGKKAAVRSWKSLYTVL--CGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        53 GwL~RKq~lesgGKKs~~RsWKkrwfVL--rG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      |||.+|.       +-..+.|++|||||  ..+.|.||+++.+..    .-+.|+|..+.+.+.    ++...|.|.+. 
T Consensus         1 G~llKkr-------r~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~----~rGsi~v~~a~is~~----~~~~~I~idsg-   64 (89)
T PF15409_consen    1 GWLLKKR-------RKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK----LRGSIDVSLAVISAN----KKSRRIDIDSG-   64 (89)
T ss_pred             Ccceeec-------cccCCCceeEEEEEEcCCcEEEEEecCCCCe----eEeEEEccceEEEec----CCCCEEEEEcC-
Confidence            7787653       33579999999999  899999999887642    246788887776652    34457888765 


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      ...|.|-|.|++|.+.|+.+|+.|
T Consensus        65 ~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   65 DEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhc
Confidence            479999999999999999999865

>KOG0930|consensus

Probab=99.01  E-value=1.3e-09  Score=105.58  Aligned_cols=98  Identities=23%  Similarity=0.406  Sum_probs=73.4

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ...+|||- |.    +|  ...+.||++||+|..++||||.--.+..    +-+.|.|..-.+... +..+|+++|+|-.
T Consensus       260 pdREGWLl-Kl----gg--~rvktWKrRWFiLtdNCLYYFe~tTDKE----PrGIIpLeNlsir~V-edP~kP~cfEly~  327 (395)
T KOG0930|consen  260 PDREGWLL-KL----GG--NRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENLSIREV-EDPKKPNCFELYI  327 (395)
T ss_pred             ccccceee-ee----cC--CcccchhheeEEeecceeeeeeeccCCC----CCcceeccccceeec-cCCCCCCeEEEec
Confidence            56899997 54    12  1478999999999999999997544332    367788865444433 3368899999876


Q ss_pred             C--------------C-------CcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        129 T--------------D-------GSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       129 p--------------d-------g~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +              |       ...|-++|.+.+||.+||++|+.+.+-.
T Consensus       328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~  378 (395)
T KOG0930|consen  328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD  378 (395)
T ss_pred             CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence            5              2       2579999999999999999999776533

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.91  E-value=1.3e-08  Score=85.30  Aligned_cols=97  Identities=18%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             eEEEEEEeeeeeeccCCccccc-cCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE-ecCCCCCCcceEEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAV-RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDYTKRKHVFRL  126 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~-RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~dy~KRKnVFrL  126 (344)
                      |++.|||.-...       +.+ ..=|.+||||+..+|++|||+.+..+    ...|+|.+..+. +..+..+++|+|.|
T Consensus         1 virkgwl~~~n~-------~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~gf~sk~~~FeL   69 (110)
T cd01256           1 VIRKGWLSISNV-------GIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEGGFMSRNHKFAL   69 (110)
T ss_pred             CeeeeeEEeecc-------ceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecccccCCCcEEEE
Confidence            467899974331       122 23589999999999999999987543    567888875544 55567888899999


Q ss_pred             EeCCC-------cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        127 YCTDG-------SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       127 ~tpdg-------~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      -.+++       ++.-|+|++++|++.|-..+-+|--
T Consensus        70 fnpd~rnvykd~k~lel~~~~~e~vdswkasflragv  106 (110)
T cd01256          70 FYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRAGV  106 (110)
T ss_pred             EcCcccccccchheeeecCCCHHHHHHHHHHHHhccc
Confidence            98865       5678999999999999998876643

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=98.86  E-value=3.2e-08  Score=81.87  Aligned_cols=97  Identities=15%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ..+||+|.+.+         ....|.++||.+.+..||..+..... ......+.|+|.+..+....+....+|+|+|..
T Consensus         2 ~ikEG~L~K~~---------~k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~   71 (99)
T cd01220           2 FIRQGCLLKLS---------KKGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEHEWGVPHCFTIFG   71 (99)
T ss_pred             eeeEEEEEEEe---------CCCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccCCcCCceeEEEEc
Confidence            46899998432         22456766666666555554432111 001124678898887765555345689999997


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +. +.|+|+|.|++|+.+||.+|+.++.
T Consensus        72 ~~-ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          72 GQ-CAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             CC-eEEEEECCCHHHHHHHHHHHHHHhh
Confidence            75 7999999999999999999998763

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4407|consensus

Probab=98.81  E-value=2.3e-10  Score=125.93  Aligned_cols=141  Identities=23%  Similarity=0.202  Sum_probs=113.7

Q ss_pred             CCCCC------Ccccccccchhhhhhhh----------hccC-CCCCeEEEEEEeeeeeeccCCcccc--ccCCceEEEE
Q psy10626         19 PKRTP------SFTTRRRTQSFRKLQKL----------EQLD-QLPPVEIQGVLERKHELQSGGKKAA--VRSWKSLYTV   79 (344)
Q Consensus        19 p~r~P------Sf~t~rr~~S~~~~~~~----------e~~d-~l~~V~KeGwL~RKq~lesgGKKs~--~RsWKkrwfV   79 (344)
                      ++|++      +|..+.++++++.-++.          |..+ -+....|+|||+.++....+||+.+  .+.|++.|.+
T Consensus       876 ~nRv~~~~a~rsfk~disLds~~i~~rh~~se~t~srsD~s~e~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~  955 (1973)
T KOG4407|consen  876 HNRVDVCNAIRSFKYDISLDSSFIKQRHVVSEVTQSRSDHSIELFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTG  955 (1973)
T ss_pred             CccchhhhhhhhheecccccccchhhhccccccccchhhhhhhhhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHH
Confidence            55555      78888888888775433          3222 3677889999999999988998775  7999999999


Q ss_pred             EeCCeEeEEecCchhhccc----------CCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHH
Q psy10626         80 LCGQLLCFFKDQDDFVASK----------AATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVN  149 (344)
Q Consensus        80 LrG~~L~fYKDeke~a~~~----------a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~  149 (344)
                      |.|+.|++|++..+.....          ....++.|.+|.+++....+++++||+|.+.+.++++|+|+|.++|-.|++
T Consensus       956 l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ 1035 (1973)
T KOG4407|consen  956 LHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLS 1035 (1973)
T ss_pred             hccccceecccccccCcchhhhhcccccccccCccccccchhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhh
Confidence            9999999999987733211          123467888999888777799999999999999999999999999999999


Q ss_pred             HHHHhhCCCC
Q psy10626        150 KISFHAQLPP  159 (344)
Q Consensus       150 AIr~aaaL~~  159 (344)
                      .+...+....
T Consensus      1036 ttq~St~~na 1045 (1973)
T KOG4407|consen 1036 TTQSSTTENA 1045 (1973)
T ss_pred             hhhhcccccc
Confidence            9976655443

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.64  E-value=3.6e-07  Score=77.74  Aligned_cols=97  Identities=21%  Similarity=0.403  Sum_probs=67.4

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE---------ecCCCCCCc
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE---------KAGDYTKRK  121 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~---------ia~dy~KRK  121 (344)
                      .||||.-..   .++ +...+.|+++|+||++..|+||-.+.+... ..+...++|.. .+.         +..+.+.-+
T Consensus         2 lEGwlsvP~---~~~-~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~-~~p~~vldl~~-~fhv~~V~asDVi~a~~kDiP   75 (112)
T cd01242           2 MEGWLSLPN---RTN-KSRKPGWKKQYVVVSSRKILFYNDEQDKEN-STPSMILDIDK-LFHVRPVTQGDVYRADAKEIP   75 (112)
T ss_pred             cceeEEccC---CCC-ccccCCceEEEEEEeCCEEEEEecCccccC-CCcEEEEEccc-eeeeecccHHHeeecCcccCC
Confidence            589997432   112 112468999999999999999987765321 12233444432 111         222446678


Q ss_pred             ceEEEEeCC-CcEEEEECCCHHHHHHHHHHHHH
Q psy10626        122 HVFRLYCTD-GSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       122 nVFrL~tpd-g~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      .+|+|...+ +...||.|++++|-+.|+.+|..
T Consensus        76 ~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~  108 (112)
T cd01242          76 KIFQILYANEARDLLLLAPQTDEQNKWVSRLVK  108 (112)
T ss_pred             eEEEEEeCCccceEEEEeCCchHHHHHHHHHHH
Confidence            999999865 58999999999999999999974

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0517|consensus

Probab=98.63  E-value=1.8e-10  Score=129.75  Aligned_cols=107  Identities=36%  Similarity=0.526  Sum_probs=94.9

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc----cCCCccEEecccEEEecCCCCCCcceE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS----KAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~----~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ...+|+|+||+..++.++++..|.|...||+|+.+.|.||||.+....+    .....++.+..+.|.++.+|.+++|||
T Consensus      2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~ 2378 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVF 2378 (2473)
T ss_pred             HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhh
Confidence            3578999999999998999999999999999999999999998765443    134567888888889999999999999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .|..++|.+|+|+|.++++|+.|+.++....
T Consensus      2379 ~l~~~~gae~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2379 LLQLPPGAEHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred             hhcCCchHHHHHhhccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987554

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.57  E-value=3.5e-07  Score=77.03  Aligned_cols=95  Identities=16%  Similarity=0.255  Sum_probs=63.7

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeC-CeEe---EEecCc--hhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-QLLC---FFKDQD--DFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-~~L~---fYKDek--e~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      |+|||+.+.      ++...-.|.++||...+ +.++   .+....  +..........|.|..|.+..+ +...|.++|
T Consensus         1 k~GYLy~~~------k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~-~~~dRRFCF   73 (104)
T cd01249           1 KEGYLYMQE------KSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKT-ESIDKRFCF   73 (104)
T ss_pred             CCceEEEEc------CCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeecccccc-CCccceeeE
Confidence            589998553      23344589999999875 3332   222221  0011112345677777766544 446788999


Q ss_pred             EEEeCCC-cEEEEECCCHHHHHHHHHHHH
Q psy10626        125 RLYCTDG-SEFLFLAPSETLMEDWVNKIS  152 (344)
Q Consensus       125 rL~tpdg-~eyLFqAeSeeEM~eWI~AIr  152 (344)
                      +|.+.+. ..++|||+|+.|...||.||.
T Consensus        74 ei~~~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          74 DVEVEEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             eeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence            9988765 379999999999999999985

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.45  E-value=2.2e-06  Score=73.96  Aligned_cols=99  Identities=17%  Similarity=0.302  Sum_probs=66.9

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc--cCCCccEEecc--cEEE-------ecCCCC
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS--KAATSPIIIFK--ARCE-------KAGDYT  118 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~--~a~~~~IsL~g--a~v~-------ia~dy~  118 (344)
                      ..||||....   .+|   ..+.|+++|+||++..|+||-.+.+....  ......|++++  +.+.       +..+.+
T Consensus         3 ~~EGwvkvP~---~~~---~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~k   76 (122)
T cd01243           3 AYEGHVKIPK---PGG---VKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKK   76 (122)
T ss_pred             cceeeEeccC---CCC---cccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcc
Confidence            3689997432   112   23689999999999999999866543211  11223456642  2222       112335


Q ss_pred             CCcceEEEEeC------CCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        119 KRKHVFRLYCT------DGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       119 KRKnVFrL~tp------dg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .-+++|+|.+.      .+...||.|+++.|-+.|+.+|...
T Consensus        77 DiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          77 DIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             cCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            66899999874      4578999999999999999999754

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.39  E-value=7.4e-07  Score=75.46  Aligned_cols=95  Identities=19%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCe-----EeEEecCchhhcccCCCccEEecccEEEecCCC-------
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQL-----LCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-------  117 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~-----L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-------  117 (344)
                      .++|||.+..       +...+.|++|||||++=.     |+-|+.++.     .+...|.|.|.+|+.....       
T Consensus         3 k~sGyL~k~G-------g~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~   70 (117)
T cd01234           3 KHCGYLYAIG-------KNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSE   70 (117)
T ss_pred             ceeEEEEecc-------chhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCcccc
Confidence            3789998432       235899999999999733     333333322     2467899999998854321       


Q ss_pred             ---CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        118 ---TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       118 ---~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                         ...++-|...- .|.+..|+.+++.|...||+++-+|.+.
T Consensus        71 ~~~~gg~~ff~avk-egd~~~fa~~de~~r~lwvqa~yratgq  112 (117)
T cd01234          71 LSLQGGRHFFNAVK-EGDELKFATDDENERHLWVQAMYRATGQ  112 (117)
T ss_pred             cccccchhhhheec-cCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence               24455666553 5689999999999999999999988763

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690|consensus

Probab=98.37  E-value=2.9e-07  Score=91.69  Aligned_cols=99  Identities=17%  Similarity=0.335  Sum_probs=71.8

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhccc-CCCccEEecccEEEecCCCCCCcceEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVASK-AATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~~-a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      .|.++|||++|.+        -.++|+.+||+|. .+.|.-|+.+....... .+.+-+.+.+|  ....-...|+|.|-
T Consensus        14 ~vvkEgWlhKrGE--------~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~c--q~m~~erPrPntFi   83 (516)
T KOG0690|consen   14 DVVKEGWLHKRGE--------HIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDC--QTMKTERPRPNTFI   83 (516)
T ss_pred             hhHHhhhHhhcch--------hhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhh--hhhhccCCCCceEE
Confidence            5999999997654        3799999999997 57888898775432110 11122233333  23334578999999


Q ss_pred             EEeCCCc---EEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDGS---EFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg~---eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |++-.+.   +-.|.+++.++.++|+.||+.++.
T Consensus        84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn  117 (516)
T KOG0690|consen   84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSN  117 (516)
T ss_pred             EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence            9987664   467999999999999999998874

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.36  E-value=8.4e-07  Score=75.69  Aligned_cols=95  Identities=18%  Similarity=0.286  Sum_probs=62.1

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC----C-CCCcceEE
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD----Y-TKRKHVFR  125 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d----y-~KRKnVFr  125 (344)
                      .+|+|+-|.        .+.++|+++||+|++.-||++--.+.. ...+....+.+.+..|=...+    | ..-.|.|.
T Consensus         2 ~~g~LylK~--------~gkKsWKk~~f~LR~SGLYy~~Kgksk-~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~   72 (114)
T cd01259           2 MEGPLYLKA--------DGKKSWKKYYFVLRSSGLYYFPKEKTK-NTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFG   72 (114)
T ss_pred             ccceEEEcc--------CCCccceEEEEEEeCCeeEEccCCCcC-CHHHHHHHHhcccCcEEEEechhhccCCCCCceEE
Confidence            589999774        357899999999999999887433321 111111223333322221111    1 23468899


Q ss_pred             EEeCC------CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        126 LYCTD------GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       126 L~tpd------g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      |..+.      ...-+|+|+|+..+..||.+|+-+
T Consensus        73 ~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~  107 (114)
T cd01259          73 FKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA  107 (114)
T ss_pred             EeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence            87652      235789999999999999999854

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=98.27  E-value=2.5e-06  Score=71.75  Aligned_cols=83  Identities=18%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             ccCCceEEEEEe----CCeEeEEec--CchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHH
Q psy10626         70 VRSWKSLYTVLC----GQLLCFFKD--QDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETL  143 (344)
Q Consensus        70 ~RsWKkrwfVLr----G~~L~fYKD--eke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeE  143 (344)
                      .-.|+++-.+|+    |..|.||--  .+...+ .-...+..|....-.-+.++.++.|+|.|+..++.+|+|+|.|.++
T Consensus        18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrp-k~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q   96 (107)
T cd01231          18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKP-KLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQ   96 (107)
T ss_pred             ccccceeeEEEEecCCCceEEEEccCCCCCCCC-ccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHH
Confidence            567999999887    456666654  222211 1122333444433333456778999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy10626        144 MEDWVNKISF  153 (344)
Q Consensus       144 M~eWI~AIr~  153 (344)
                      |+.|+..|+.
T Consensus        97 ~~SWla~Ir~  106 (107)
T cd01231          97 LNSWLAELRY  106 (107)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.25  E-value=4.8e-06  Score=70.59  Aligned_cols=98  Identities=11%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-cCCCccEEec--ccE-EEecCC---CCCCcceE
Q psy10626         52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-KAATSPIIIF--KAR-CEKAGD---YTKRKHVF  124 (344)
Q Consensus        52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-~a~~~~IsL~--ga~-v~ia~d---y~KRKnVF  124 (344)
                      .|||.-+ ... +|  ...+.|+.+|++|+|..|++|+........ ..+.....|.  -+. +.....   ..++.++|
T Consensus         2 mGW~~E~-~~~-~~--~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F   77 (108)
T cd01258           2 IGWVNEQ-LSG-DD--ESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCF   77 (108)
T ss_pred             ceecccc-cCC-CC--ccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEE
Confidence            5999844 221 11  135899999999999999999876543221 1122222332  111 111111   23788999


Q ss_pred             EEEeCCC-cEEEEECCCHHHHHHHHHHHHH
Q psy10626        125 RLYCTDG-SEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       125 rL~tpdg-~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      .|++..+ ..++|.+++..||..|.++|..
T Consensus        78 ~irtg~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          78 LIRTGTQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             EEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence            9999999 9999999999999999999974

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3640|consensus

Probab=98.24  E-value=1.5e-06  Score=94.42  Aligned_cols=102  Identities=22%  Similarity=0.342  Sum_probs=74.9

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE---ec-CCCCCCcc
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE---KA-GDYTKRKH  122 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~---ia-~dy~KRKn  122 (344)
                      ..|+..|||..=.+      .++...|++|||+|.|+.+.|+|-..+-+ ...+.+.|+|..|+-.   .+ .+...|.|
T Consensus       988 idVEYrGFLtmfed------~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen  988 IDVEYRGFLTMFED------GSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred             cceeeeeeeeeeec------cCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCc
Confidence            34667788874332      24567799999999999999999544322 2246788999887633   22 25688999


Q ss_pred             eEEEEeC-----C-------C-cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        123 VFRLYCT-----D-------G-SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       123 VFrL~tp-----d-------g-~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .|.|.+-     |       - .-.+|+|++-+|++.|+.+||.+.
T Consensus      1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL 1106 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTL 1106 (1116)
T ss_pred             eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHH
Confidence            9999831     1       1 268999999999999999999653

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=98.24  E-value=1.6e-05  Score=66.75  Aligned_cols=96  Identities=15%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ..++|-|.+-+          .+.-+.|||.|=++.|.|-+-.-. .....-...++|.+..+.-..|...-+|.|.|.+
T Consensus         4 li~eG~L~K~~----------rk~~~~R~ffLFnD~LvY~~~~~~-~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~   72 (104)
T cd01218           4 LVGEGVLTKMC----------RKKPKQRQFFLFNDILVYGNIVIS-KKKYNKQHILPLEGVQVESIEDDGIERNGWIIKT   72 (104)
T ss_pred             EEecCcEEEee----------cCCCceEEEEEecCEEEEEEeecC-CceeeEeeEEEccceEEEecCCcccccceEEEec
Confidence            45789997433          455677899999998877532111 0011124567888877654445445689999999


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +. +.|.++|+|++|..+|+.+|+.|+.
T Consensus        73 ~~-kSf~v~A~s~~eK~eWl~~i~~ai~   99 (104)
T cd01218          73 PT-KSFAVYAATETEKREWMLHINKCVT   99 (104)
T ss_pred             CC-eEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            86 7999999999999999999998863

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.11  E-value=7.7e-06  Score=82.63  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEe---cccEEEe-cCCCCCCcce
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII---FKARCEK-AGDYTKRKHV  123 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL---~ga~v~i-a~dy~KRKnV  123 (344)
                      .+...|||. |.        .....|+++|+.|.++.+.+...+.....+. ....+.+   .++ +-+ .....+++|+
T Consensus       376 Dv~~~G~l~-k~--------~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~v-~pv~~~~~~~~~~~  444 (478)
T PTZ00267        376 DVTHGGYLY-KY--------SSDMRWKKRYFYIGNGQLRISLSENPENDGV-APKSVNLETVNDV-FPVPEVYSQKHPNQ  444 (478)
T ss_pred             CcccceEEe-cc--------CCCcchhhheEEecCCceEEEeccccccCCC-CCccccHHHhccc-ccccHHhcCCCCce
Confidence            466788887 33        1244699999999987777653322211111 1122222   222 112 1233568999


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      |.|.+.++..++|+|+|+++|++||.+|+.+.++
T Consensus       445 ~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  478 (478)
T PTZ00267        445 LVLWFNNGQKIIAYAKTAEDRDQWISKFQRACGM  478 (478)
T ss_pred             EEEEecCCcEEEEecCChHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999988763

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.01  E-value=5.6e-05  Score=64.33  Aligned_cols=99  Identities=15%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchh--hcc-----cCCCccEEecccEEEecCCCCCCc
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF--VAS-----KAATSPIIIFKARCEKAGDYTKRK  121 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~--a~~-----~a~~~~IsL~ga~v~ia~dy~KRK  121 (344)
                      ..++|-|.+-.        ...+.++.||+.|=++.|.+.|-....  ..+     ......++|.+..+.-..+...-+
T Consensus         4 lI~EG~L~ki~--------~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~k   75 (112)
T cd01261           4 FIMEGTLTRVG--------PSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYK   75 (112)
T ss_pred             ccccCcEEEEe--------cccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccC
Confidence            45678886322        224678899999999999998853321  000     011233667665554334444568


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.|.|.+.++..|+|+|.+++|-++||.+|..+.
T Consensus        76 naF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~  109 (112)
T cd01261          76 NAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQ  109 (112)
T ss_pred             ceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence            9999999877899999999999999999998664

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=97.95  E-value=5.7e-05  Score=64.89  Aligned_cols=91  Identities=11%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE-ecCCC----CCCcceEE
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDY----TKRKHVFR  125 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~dy----~KRKnVFr  125 (344)
                      ||||+..=.        .....||++|.+|....|.+|+++...+    ...-|.|.+-... .+.+.    ....|+|+
T Consensus         2 kEGWmVHyT--------~~d~~rKRhYWrLDsK~Itlf~~e~~sk----yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE   69 (117)
T cd01239           2 KEGWMVHYT--------SSDNRRKKHYWRLDSKAITLYQEESGSR----YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE   69 (117)
T ss_pred             ccceEEEEe--------cCccceeeeEEEecCCeEEEEEcCCCCe----eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence            799997432        2468899999999999999999987543    2445666543321 12221    35899999


Q ss_pred             EEeCCCcEEEEECC--------------------CHHHHHHHHHHHHHh
Q psy10626        126 LYCTDGSEFLFLAP--------------------SETLMEDWVNKISFH  154 (344)
Q Consensus       126 L~tpdg~eyLFqAe--------------------SeeEM~eWI~AIr~a  154 (344)
                      |+|.+ .+|+...+                    ..+..+.|-.||+.|
T Consensus        70 i~T~~-~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          70 IRTTT-NVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             EEecC-EEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            99966 67777554                    234558899988754

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=97.94  E-value=1.6e-05  Score=84.78  Aligned_cols=102  Identities=20%  Similarity=0.261  Sum_probs=76.8

Q ss_pred             CeEEEEEEeeeeeeccCCc-cccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EE-ecCCCCCCcceE
Q psy10626         48 PVEIQGVLERKHELQSGGK-KAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CE-KAGDYTKRKHVF  124 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGK-Ks~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~-ia~dy~KRKnVF  124 (344)
                      .|.++|.+.++.    .|| +.+.++.|++||-|++..|.|.|+....     +...|.|.+.. ++ +....-+.+|||
T Consensus       564 ~v~k~glm~kr~----~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----~~~~Ipl~nI~avEklee~sF~~knv~  634 (800)
T KOG2059|consen  564 VVLKEGLMIKRA----QGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----PIYTIPLSNIRAVEKLEEKSFKMKNVF  634 (800)
T ss_pred             ceecccceEecc----ccccchhhhhhhheEEEeccceeEEecCCccC-----cccceeHHHHHHHHHhhhhccCCCceE
Confidence            355566665332    233 3446899999999999999999998753     35677776532 22 222335789999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      +|++.| +..+|||.+-.|.++|+.+|..++....
T Consensus       635 qVV~~d-rtly~Q~~n~vEandWldaL~kvs~~N~  668 (800)
T KOG2059|consen  635 QVVHTD-RTLYVQAKNCVEANDWLDALRKVSCCNQ  668 (800)
T ss_pred             EEEecC-cceeEecCCchHHHHHHHHHHHHhccCc
Confidence            999999 7999999999999999999998887663

>KOG1451|consensus

Probab=97.76  E-value=5.5e-05  Score=79.61  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC--eEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~--~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnV  123 (344)
                      .++-.++|+|+...      |...-..|.++||+-...  .+..-.-.+...........+-|..|.- ...|.-.+.+|
T Consensus       262 p~p~t~eGYlY~QE------K~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~R-RktdSIdKRFC  334 (812)
T KOG1451|consen  262 PTPSTKEGYLYMQE------KSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSR-RKTDSIDKRFC  334 (812)
T ss_pred             CCCcccceeeeehh------hhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhcc-Cccccccccee
Confidence            46788999998532      223357999999998643  2222222221111112344566766642 33455567799


Q ss_pred             EEEEeCCC-cEEEEECCCHHHHHHHHHHHHHhhCCCCC-CcccccccccccccCCCcchhhhhcccccccccCCCccccC
Q psy10626        124 FRLYCTDG-SEFLFLAPSETLMEDWVNKISFHAQLPPS-LQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINS  201 (344)
Q Consensus       124 FrL~tpdg-~eyLFqAeSeeEM~eWI~AIr~aaaL~~s-e~L~s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~  201 (344)
                      |-|.+.+. .+..+||=+++|...||.|+..+--.-.+ +...+|..-.  -..-|=.++.||-+.+-+.|..++||+|.
T Consensus       335 FDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y~s~~~~~~~~~~q--Ld~iGF~fvrkCI~i~Et~GI~eqGlYR~  412 (812)
T KOG1451|consen  335 FDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSYTSGENCSTYKQTQ--LDDIGFEFVRKCIDILETSGIHEQGLYRN  412 (812)
T ss_pred             eeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccccCccccchhhhhh--hhhhhHHHHHHHHHHHHhcCcccccchhh
Confidence            99987642 48899999999999999999755321111 2222333221  12456789999999999999999999999


Q ss_pred             CCcc
Q psy10626        202 DGYS  205 (344)
Q Consensus       202 ~g~~  205 (344)
                      -|..
T Consensus       413 vGvn  416 (812)
T KOG1451|consen  413 VGVN  416 (812)
T ss_pred             ccch
Confidence            8863

>KOG1090|consensus

Probab=97.68  E-value=1.8e-05  Score=86.84  Aligned_cols=91  Identities=23%  Similarity=0.329  Sum_probs=71.4

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcccCCCccEEecccE--EEecCCCCCCcceEEE
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPIIIFKAR--CEKAGDYTKRKHVFRL  126 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~~a~~~~IsL~ga~--v~ia~dy~KRKnVFrL  126 (344)
                      -+|+|++++        +..+.|+.+||||.  ..+|+||-|..+.+    +.++|+|-.-.  ..+...-..++-.|.|
T Consensus      1636 ~eG~LyKrG--------A~lK~Wk~RwFVLd~~khqlrYYd~~edt~----pkG~IdLaevesv~~~~~k~vdekgffdl 1703 (1732)
T KOG1090|consen 1636 PEGYLYKRG--------AKLKLWKPRWFVLDPDKHQLRYYDDFEDTK----PKGCIDLAEVESVALIGPKTVDEKGFFDL 1703 (1732)
T ss_pred             cccchhhcc--------hhhcccccceeEecCCccceeeeccccccc----ccchhhhhhhhhhcccCccccCccceeee
Confidence            399999654        46899999999997  48999998887654    47888886422  1122233556779999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .+.+ ++|-|.|.+....+.|+..|+.+
T Consensus      1704 ktt~-rvynf~a~nin~AqqWve~iqsc 1730 (1732)
T KOG1090|consen 1704 KTTN-RVYNFCAQNINLAQQWVECIQSC 1730 (1732)
T ss_pred             ehhh-HHHHHHhccchHHHHHHHHHHHh
Confidence            9987 89999999999999999999854

>KOG3751|consensus

Probab=97.59  E-value=9.7e-05  Score=76.87  Aligned_cols=100  Identities=20%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec----CCC-CCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA----GDY-TKR  120 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia----~dy-~KR  120 (344)
                      .....++|+|+.|.        .+.|.||++||||+..-|||+--.... ..++..-..++++..|=..    .-| ..-
T Consensus       314 ~~~pei~GfL~~K~--------dgkKsWKk~yf~LR~SGLYys~K~tsk-~~r~Lq~l~~~~~snVYt~i~~rKkyksPT  384 (622)
T KOG3751|consen  314 SSPPEIQGFLYLKE--------DGKKSWKKHYFVLRRSGLYYSTKGTSK-EPRHLQCLADLHSSNVYTGIGGRKKYKSPT  384 (622)
T ss_pred             CCCccccceeeecc--------cccccceeEEEEEecCcceEccCCCCC-CchhhHHHHhcccCceEEeecchhccCCCC
Confidence            45688999999875        257889999999999999988544322 1122222234443222211    122 223


Q ss_pred             cceEEEEeC---C--CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        121 KHVFRLYCT---D--GSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       121 KnVFrL~tp---d--g~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .|.|.|...   +  ...-+|+|+|+....-|+.||+.+
T Consensus       385 d~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~  423 (622)
T KOG3751|consen  385 DYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL  423 (622)
T ss_pred             CceEEeeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence            577887753   2  235689999999999999999844

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.56  E-value=0.00026  Score=72.46  Aligned_cols=47  Identities=28%  Similarity=0.444  Sum_probs=40.7

Q ss_pred             ecCCCCC--CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        113 KAGDYTK--RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       113 ia~dy~K--RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      +..-|..  .+|||.|...+|+.+.|+|.+++|++.||++|+.+.++-.
T Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (496)
T PTZ00283        445 VPSKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGIGD  493 (496)
T ss_pred             ccHHhhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCCCC
Confidence            3334544  8999999999999999999999999999999999988653

>KOG0521|consensus

Probab=97.54  E-value=3.8e-05  Score=83.61  Aligned_cols=95  Identities=17%  Similarity=0.300  Sum_probs=72.8

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ..+.|.|+.|-.       ...+.|.++||-+.++.|.+++.-.....    ...++|.-|.+....+...+++||+|++
T Consensus       274 ~~~~~~l~~k~~-------~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~~~drr~CF~iiS  342 (785)
T KOG0521|consen  274 YRMEGYLRKKAS-------NASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAEQRDRRFCFEIIS  342 (785)
T ss_pred             hhhhhhhhhhcc-------cchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcccccceeeEEEec
Confidence            445566664431       13789999999999888888876554321    3456787888777666668899999999


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ++ +.|+|||+|+.+-++||.+|+..+
T Consensus       343 ~t-ks~~lQAes~~d~~~Wi~~i~nsi  368 (785)
T KOG0521|consen  343 PT-KSYLLQAESEKDCQDWISALQNSI  368 (785)
T ss_pred             CC-cceEEecCchhHHHHHHHHHHHHH
Confidence            66 799999999999999999998665

>KOG3531|consensus

Probab=97.38  E-value=5.1e-05  Score=82.18  Aligned_cols=92  Identities=23%  Similarity=0.395  Sum_probs=72.9

Q ss_pred             EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcceEEEEeC
Q psy10626         52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHVFRLYCT  129 (344)
Q Consensus        52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnVFrL~tp  129 (344)
                      .|+|-||..        ....|++.|+|...-+|+|||..++..+    ...+.|-|..+.+..  +--.|.+||.|.-.
T Consensus       927 sg~Llrkfk--------nssgwqkLwvvft~fcl~fyKS~qD~~~----laslPlLgysvs~P~~~d~i~K~~vfkl~fk  994 (1036)
T KOG3531|consen  927 SGYLLRKFK--------NSSGWQKLWVVFTNFCLFFYKSHQDSEP----LASLPLLGYSVSIPAEPDPIQKDYVFKLKFK  994 (1036)
T ss_pred             hHHHHHHhh--------ccccceeeeeeecceeeEeecccccccc----cccccccccccCCCCCCCCcchhheeeeehh
Confidence            466666652        2458999999999999999998876433    456667777666543  45678999999988


Q ss_pred             CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        130 DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       130 dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      + ..|+|.|++.-..+.|+..|+.+..
T Consensus       995 ~-hvyffraes~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen  995 S-HVYFFRAESYYTFERWMEVITDAPS 1020 (1036)
T ss_pred             h-hHHHHhhhhhhhhhhHHHHhhcCCc
Confidence            7 6999999999999999999986654

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.14  E-value=0.0029  Score=55.05  Aligned_cols=80  Identities=23%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             CceEEEEEeCCeEeEEecCchhhcc---cCCCccEEecccEEEec---CC--CCCCcceEEEEeC---CC--cEEEEECC
Q psy10626         73 WKSLYTVLCGQLLCFFKDQDDFVAS---KAATSPIIIFKARCEKA---GD--YTKRKHVFRLYCT---DG--SEFLFLAP  139 (344)
Q Consensus        73 WKkrwfVLrG~~L~fYKDeke~a~~---~a~~~~IsL~ga~v~ia---~d--y~KRKnVFrL~tp---dg--~eyLFqAe  139 (344)
                      =+.+|+.|-.+.|.+.|-+.+..-.   .++-..|.+.++.....   .+  ....+|+|.|..-   +|  .+++|+|+
T Consensus        27 ~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~  106 (125)
T cd01221          27 ARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSAD  106 (125)
T ss_pred             CCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECC
Confidence            4579999999999988754321100   01122233332211100   00  0146899999743   33  57999999


Q ss_pred             CHHHHHHHHHHHH
Q psy10626        140 SETLMEDWVNKIS  152 (344)
Q Consensus       140 SeeEM~eWI~AIr  152 (344)
                      |++|+..||.||.
T Consensus       107 S~sdr~rWi~Al~  119 (125)
T cd01221         107 SQSDRERWLSALA  119 (125)
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=97.08  E-value=0.0081  Score=51.25  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             cCC-ceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCC------CcceEEEEeCC-CcEEEEECCCHH
Q psy10626         71 RSW-KSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTK------RKHVFRLYCTD-GSEFLFLAPSET  142 (344)
Q Consensus        71 RsW-KkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~K------RKnVFrL~tpd-g~eyLFqAeSee  142 (344)
                      +.| +.|++.|=.++|+++|-..-........+.|++..+.+.-..|-..      -+|.|.|...+ +..|+|.|.+.+
T Consensus        15 ~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e   94 (109)
T cd01224          15 KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAE   94 (109)
T ss_pred             cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHH
Confidence            344 4788899999999998543221111234567888776654433322      38999999877 568999999999


Q ss_pred             HHHHHHHHHH
Q psy10626        143 LMEDWVNKIS  152 (344)
Q Consensus       143 EM~eWI~AIr  152 (344)
                      +-+.|++||.
T Consensus        95 ~K~~Wm~a~~  104 (109)
T cd01224          95 RKHRWLSAFA  104 (109)
T ss_pred             HHHHHHHHHH
Confidence            9999999996

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=97.04  E-value=0.0026  Score=68.66  Aligned_cols=102  Identities=19%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecc-cEEE-ecCC--CCCCcce
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK-ARCE-KAGD--YTKRKHV  123 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~g-a~v~-ia~d--y~KRKnV  123 (344)
                      .+.++|||++=.     -+|.+...=+++||||+|..|.+||.+....  ..+.....|.+ |.|+ .-..  ..+--||
T Consensus         3 ~~~~eGW~y~~g-----~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~~g~~~yv   75 (719)
T PLN00188          3 KVVYEGWMVRYG-----RRKIGRSYIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV   75 (719)
T ss_pred             cceEeeEEEEEc-----ccccccccceeEEEEEecchhhhcccCCccc--cccceeeccCCCceEeecCceEEcCceEEE
Confidence            578999998532     2344556679999999999999999865432  12222333332 3332 1111  1222356


Q ss_pred             EEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|-..  ......|.|.+.+|...|+++|..|+.
T Consensus        76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~  110 (719)
T PLN00188         76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVID  110 (719)
T ss_pred             EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHh
Confidence            666543  335789999999999999999998875

>PLN02866 phospholipase D

Probab=96.99  E-value=0.0054  Score=68.67  Aligned_cols=106  Identities=18%  Similarity=0.290  Sum_probs=70.8

Q ss_pred             CCCCeEEEEEEeeeeeecc-C-Ccccc----------ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-----
Q psy10626         45 QLPPVEIQGVLERKHELQS-G-GKKAA----------VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF-----  107 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~les-g-GKKs~----------~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~-----  107 (344)
                      ++++-.+||++.+|+.-.. + +.+..          .-+|.++|+||+.+.|.|.+|....+.    ...|.+.     
T Consensus       178 ~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~----~~v~lfD~~~~~  253 (1068)
T PLN02866        178 EYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKP----LDIIVFDVLPAS  253 (1068)
T ss_pred             hcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCce----eEEEEEeccccc
Confidence            3677889999986642111 1 11111          257999999999999999877765332    1111111     


Q ss_pred             ----ccEEEecCCC---CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        108 ----KARCEKAGDY---TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       108 ----ga~v~ia~dy---~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                          +..+.++.+.   ..-+|.|+|...+ +...|-+.+..++..|+.+|+.++
T Consensus       254 ~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~ai~~~~  307 (1068)
T PLN02866        254 NGNGEGQISLAKEIKERNPLRFGFKVTCGN-RSIRLRTKSSAKVKDWVAAINDAG  307 (1068)
T ss_pred             ccCCCcceeecccccccCCCcceEEEecCc-eEEEEEECCHHHHHHHHHHHHHHH
Confidence                1123333333   2347899998765 789999999999999999999886

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=96.97  E-value=0.0081  Score=50.64  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC-eEeEEecCchhhcccCCCccEEecccE-EEecCCCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-LLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGDYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~-~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~dy~KRKnV  123 (344)
                      ...|.++|.|.++..        ..  +++|+++|+++ .|+|+.-.....     .+.|.+..+. +..     +....
T Consensus        10 ge~Il~~g~v~K~kg--------l~--~kkR~liLTd~PrL~Yvdp~~~~~-----KGeI~~~~~l~v~~-----k~~~~   69 (104)
T PF14593_consen   10 GELILKQGYVKKRKG--------LF--AKKRQLILTDGPRLFYVDPKKMVL-----KGEIPWSKELSVEV-----KSFKT   69 (104)
T ss_dssp             T--EEEEEEEEEEET--------TE--EEEEEEEEETTTEEEEEETTTTEE-----EEEE--STT-EEEE-----CSSSE
T ss_pred             CCeEEEEEEEEEeec--------eE--EEEEEEEEccCCEEEEEECCCCeE-----CcEEecCCceEEEE-----ccCCE
Confidence            447999999986541        12  89999999987 666664443321     3567777542 333     23348


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.|.++ ++.|+|...+.. ...|+++|+.+.
T Consensus        70 F~I~tp-~RtY~l~d~~~~-A~~W~~~I~~~~   99 (104)
T PF14593_consen   70 FFIHTP-KRTYYLEDPEGN-AQQWVEAIEEVK   99 (104)
T ss_dssp             EEEEET-TEEEEEE-TTS--HHHHHHHHHHHH
T ss_pred             EEEECC-CcEEEEECCCCC-HHHHHHHHHHHH
Confidence            999999 589999985555 566999998653

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=96.92  E-value=0.011  Score=50.73  Aligned_cols=101  Identities=12%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      .+|.|....-+.....        ....=..||+||=.+.|++.+...... +-...+.++|.+..+....+....+|+|
T Consensus         8 ~lG~vi~mS~V~~~~~--------~~qe~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd~e~~~~aF   78 (111)
T cd01225           8 TLGNVIHMSQVAVQYG--------AGEEKRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLEDTEALKNAF   78 (111)
T ss_pred             hcCceEEEEEEEEecC--------CccccceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHhccCccceE
Confidence            4666666665543321        122345788999988888887643211 2223567889988877655666789999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +|.-+.-...++.+.++.|+++|+..|+..
T Consensus        79 eI~G~li~~i~v~C~~~~e~~~Wl~hL~~~  108 (111)
T cd01225          79 EISGPLIERIVVVCNNPQDAQEWVELLNAN  108 (111)
T ss_pred             EEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence            999888789999999999999999999853

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117|consensus

Probab=96.84  E-value=0.00068  Score=74.04  Aligned_cols=140  Identities=12%  Similarity=0.060  Sum_probs=94.0

Q ss_pred             ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHH
Q psy10626         70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVN  149 (344)
Q Consensus        70 ~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~  149 (344)
                      .-.|++-||-|.|..|.+.-.........  .....|+.-.+.-..+...|.-+|.|... |++.+++.++..|...|..
T Consensus       628 ~~~~r~gwfsl~gssl~~~~~~~~ve~d~--~hlrrlqElsi~s~~~n~~K~~~l~lve~-grTLYI~g~~rldft~W~~  704 (1186)
T KOG1117|consen  628 LDQARKGWFSLDGSSLHFCLQMQPVEEDR--MHLRRLQELSISSMVQNGEKLDVLVLVEK-GRTLYIQGETRLDFTVWHT  704 (1186)
T ss_pred             hhhccccceecCCCeeEEecCCCcCchhH--HHHHHHHHHhhhhccCCcccccceEEEee-ccEEEEecCCcchHHHHHH
Confidence            46799999999999998876543321100  00111222212211122235567877764 5899999999999999999


Q ss_pred             HHHHhhCCCCCCcccccccccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        150 KISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       150 AIr~aaaL~~se~L~s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ||..|++-...    .+++..- +-.-.|.||.+|.+|+-..|++-||++|--|+--. ..|..+|-+-
T Consensus       705 AIekaa~~~gt----~LqeqqL-s~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~D  768 (1186)
T KOG1117|consen  705 AIEKAAGTDGT----ALQEQQL-SKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKD  768 (1186)
T ss_pred             HHHHHhcCCcc----hhhhhhc-cCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhc
Confidence            99988864431    1111111 22456999999999999999999999998888765 7777777654

>KOG3723|consensus

Probab=96.64  E-value=0.00065  Score=71.70  Aligned_cols=99  Identities=24%  Similarity=0.416  Sum_probs=67.6

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EE-ec--CCCCCCcceE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CE-KA--GDYTKRKHVF  124 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~-ia--~dy~KRKnVF  124 (344)
                      ...||-|.-|     +||=...|.|+.+||.|.|..|.|-|.......   ...+|+|.... |. ++  .....-+-.|
T Consensus       735 p~iEGQLKEK-----KGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS---~~~~IDl~~IRSVk~v~~kr~~rslpKAF  806 (851)
T KOG3723|consen  735 PLIEGQLKEK-----KGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS---DDCPIDLSKIRSVKAVAKKRRDRSLPKAF  806 (851)
T ss_pred             chhcchhhhh-----ccchhhhhhhccceEEecchhhhcccCCCCCCC---CCCCccHHHhhhHHHHHhhhhhcccchhh
Confidence            3567777533     243334689999999999999999775543211   13567776422 11 22  1112224589


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +|-|.|. +|+|.|.|+...++|++.|+-|.+
T Consensus       807 EIFTAD~-T~ILKaKDeKNAEEWlqCL~IavA  837 (851)
T KOG3723|consen  807 EIFTADK-TYILKAKDEKNAEEWLQCLNIAVA  837 (851)
T ss_pred             heeecCc-eEEeecccccCHHHHHHHHHHHHH
Confidence            9999995 599999999999999999997654

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=96.52  E-value=0.00073  Score=62.73  Aligned_cols=43  Identities=9%  Similarity=-0.005  Sum_probs=40.3

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccccccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~~~~~~~~~~~  217 (344)
                      ..+|.++++|+++|.++|+.++||||++|+.+..++.+.||..
T Consensus        13 ~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~~~~lk~~~d~~   55 (200)
T cd04388          13 DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSSLTELRQILDCD   55 (200)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCceeeCCCccHHHHHHHHHhcC
Confidence            6889999999999999999999999999999998899999974

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=96.20  E-value=0.079  Score=44.08  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=59.1

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      |...++|.|.. .           +.=+.|++.|=...|.|.|-....   .....-|.+.+-.+.-..+  .-++.|.|
T Consensus         2 geLlleg~l~~-~-----------~~~~eR~vFLFe~~ll~~K~~~~~---y~~K~~i~~~~l~i~e~~~--~d~~~F~v   64 (97)
T cd01222           2 GDLLLEGRFRE-H-----------GGGKPRLLFLFQTMLLIAKPRGDK---YQFKAYIPCKNLMLVEHLP--GEPLCFRV   64 (97)
T ss_pred             CceeeeceEEe-e-----------cCCCceEEEEecccEEEEEecCCe---eEEEEEEEecceEEecCCC--CCCcEEEE
Confidence            45677888852 1           112357888888888887754321   1112335554443332222  22799999


Q ss_pred             EeCCC--cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        127 YCTDG--SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       127 ~tpdg--~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ...+.  ..|.|+|.|.++-+.||++|+.+.
T Consensus        65 ~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          65 IPFDDPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             EecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            76642  489999999999999999998763

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=96.00  E-value=0.0084  Score=51.45  Aligned_cols=96  Identities=15%  Similarity=0.303  Sum_probs=69.0

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC--CCCcceEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY--TKRKHVFR  125 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy--~KRKnVFr  125 (344)
                      ++..+|++. |-    ||  .....|+++||-|=-+.|-+|....+..     ...|.+..- .++..++  -|..+|+.
T Consensus         2 DcIvhGyi~-KL----GG--PFls~WQ~Ry~~LfPNRLE~~~~~~~~~-----~eLi~M~~i-~~V~~e~~~iK~~~CI~   68 (116)
T cd01240           2 DCIVHGYIK-KL----GG--PFLSQWQTRYFKLYPNRLELYGESEANK-----PELITMDQI-EDVSVEFQQIKEENCIL   68 (116)
T ss_pred             ceEEeeehh-hh----CC--HHHHHHHHHHheeCcceeeecccccccC-----CcEEEeehh-hhcchhheeeccCceEE
Confidence            477889986 42    22  2357899999999999999986554422     223333221 1222222  37789999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+..|+..+++.++|+-++.+|...|+.+-.
T Consensus        69 ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r   99 (116)
T cd01240          69 LKIRDEKKIVLTNSDEIELKQWKKELRDAHR   99 (116)
T ss_pred             EEEcCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987654

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>PF15408 PH_7: Pleckstrin homology domain

Probab=95.94  E-value=0.0028  Score=52.51  Aligned_cols=88  Identities=13%  Similarity=0.217  Sum_probs=57.5

Q ss_pred             EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCC----CcceE-
Q psy10626         52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTK----RKHVF-  124 (344)
Q Consensus        52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~K----RKnVF-  124 (344)
                      ||+|++-.          ...-+++|+||++.+|.||.|+....     ...+.|....+.+..  ....    .-+.| 
T Consensus         1 EGYLY~~E----------~~si~rRF~~L~~K~~~~~~~KGG~~-----L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G   65 (104)
T PF15408_consen    1 EGYLYRDE----------DSSIQRRFVMLRSKQFNMYEDKGGQY-----LCSFQLSSSVVSHPMVNFSQAVPNLGINAFG   65 (104)
T ss_pred             CCeEEEec----------cchHHHHHHhhhhceeEEecccCCce-----eeeeehhhhhhhcccccccccCCCCCeeEEE
Confidence            58898532          23457889999999999998876531     234445444433221  1111    22344 


Q ss_pred             -EEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        125 -RLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       125 -rL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                       -...++++..-+-|+|.+.|+.||++++.-
T Consensus        66 ~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~   96 (104)
T PF15408_consen   66 FLMYSPSRRHVQCFASSKKVCQSWIQVMNSP   96 (104)
T ss_pred             EEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence             444568777777799999999999999843

>KOG1738|consensus

Probab=95.92  E-value=0.0012  Score=69.92  Aligned_cols=74  Identities=18%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcce
Q psy10626         44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        44 d~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnV  123 (344)
                      +.++....+|||.|+...     -.....|++.||||.++.||.|..++..+    ++..|.|.+++++.+.+-.++++.
T Consensus       557 ~~l~~G~~qg~~~r~k~~-----~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~e~~~~~~~  627 (638)
T KOG1738|consen  557 ELLGRGDRQGWLTRLKLN-----HLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAEEVLGKPEL  627 (638)
T ss_pred             HHhccchhhccchhhccc-----hHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHHHhccCHhh
Confidence            346678899999976532     12467899999999999999999887654    478999999998888776555555


Q ss_pred             EEE
Q psy10626        124 FRL  126 (344)
Q Consensus       124 FrL  126 (344)
                      |..
T Consensus       628 ~~~  630 (638)
T KOG1738|consen  628 TGE  630 (638)
T ss_pred             hcc
Confidence            543

>KOG3549|consensus

Probab=95.80  E-value=0.014  Score=59.03  Aligned_cols=105  Identities=16%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-cCCCccEEecccEEEecCC---CCCCcc
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGD---YTKRKH  122 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~d---y~KRKn  122 (344)
                      ..|...||+.-+- ..    ....+..+.+|..|+|..+|.|....-..-. ..++....+...++.+..|   ...|+|
T Consensus       279 ~qivyMGWvne~~-q~----~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~  353 (505)
T KOG3549|consen  279 EQIVYMGWVNEGV-QN----NISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQH  353 (505)
T ss_pred             ceEEEeeeccccc-cC----cccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccc
Confidence            4688899998442 11    1235667899999999999999755432111 0123334444444444443   278999


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ||.|....|+..+|..+-+.|+..|=++.+.|.-
T Consensus       354 CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf  387 (505)
T KOG3549|consen  354 CFLLQSSGGEPRYFSVELRSELARWENSFQAATF  387 (505)
T ss_pred             eEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence            9999999999999999999999999999987653

>KOG1117|consensus

Probab=95.71  E-value=0.023  Score=62.68  Aligned_cols=81  Identities=22%  Similarity=0.393  Sum_probs=63.7

Q ss_pred             cCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec--C-CC--CCCcceEEEEeCCCcEEEEECCCHHHHH
Q psy10626         71 RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA--G-DY--TKRKHVFRLYCTDGSEFLFLAPSETLME  145 (344)
Q Consensus        71 RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia--~-dy--~KRKnVFrL~tpdg~eyLFqAeSeeEM~  145 (344)
                      ..--+.||||-|+.|++|..+....+    .+.|.+..-+|...  . +|  ..-.|+|+|.++.+..|+|-+++.+++.
T Consensus       516 Ee~nr~wcVlg~g~ls~fen~~S~tP----~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~  591 (1186)
T KOG1117|consen  516 EETNRKWCVLGGGFLSYFENEKSTTP----NGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALR  591 (1186)
T ss_pred             ccCCCceEEcCcchhhhhhhcCCCCC----CceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHH
Confidence            34568899999999999998876443    56777776554422  2 22  3457999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy10626        146 DWVNKISFHA  155 (344)
Q Consensus       146 eWI~AIr~aa  155 (344)
                      .|..+|-.|-
T Consensus       592 ~wt~aiaKhf  601 (1186)
T KOG1117|consen  592 KWTEAIAKHF  601 (1186)
T ss_pred             HHHHHHHHhc
Confidence            9999997664

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=95.68  E-value=0.0034  Score=57.53  Aligned_cols=50  Identities=8%  Similarity=-0.019  Sum_probs=42.7

Q ss_pred             cccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        168 DSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       168 ~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      +..+.++...|.+..+|.+++.++|+..|||||.+|.... ..+.+.|++-
T Consensus         8 ~~~~~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~   58 (193)
T cd04382           8 DFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRG   58 (193)
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcC
Confidence            3444566899999999999999999999999999998776 8888889853

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=95.55  E-value=0.0032  Score=57.36  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.+.++|.+++.++|+..|||||.+|.... ..+.+.|+.-.
T Consensus        20 ~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~   64 (199)
T cd04390          20 RLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGE   64 (199)
T ss_pred             CCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCC
Confidence            568999999999999999999999999998877 88888888643

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=95.50  E-value=0.0026  Score=57.82  Aligned_cols=45  Identities=11%  Similarity=-0.030  Sum_probs=40.5

Q ss_pred             cCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        174 QYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       174 ~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ....|.++++|.+++.++|+..|||||.+|.... ..+.+.|++..
T Consensus        15 ~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~   60 (188)
T cd04383          15 GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGE   60 (188)
T ss_pred             CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCC
Confidence            3578999999999999999999999999999987 88999998754

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=95.27  E-value=0.34  Score=41.42  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=57.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhc----ccCCCccEEecccEEEecCCCCCCc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA----SKAATSPIIIFKARCEKAGDYTKRK  121 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~----~~a~~~~IsL~ga~v~ia~dy~KRK  121 (344)
                      +|....+|-+..-.     |++...+.=+.|.+.|=...|.|-|-..+...    .......|.+.+-.+....+-... 
T Consensus         2 qG~Ll~Q~~f~v~~-----~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~-   75 (114)
T cd01232           2 QGKLLLQDTFQVWD-----PKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPC-   75 (114)
T ss_pred             CCceEEEccEEEEe-----CCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCc-
Confidence            45666777554322     11111223356777787888888775433210    011123445544333322222334 


Q ss_pred             ceEEEEeCC----CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        122 HVFRLYCTD----GSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       122 nVFrL~tpd----g~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                       .|.|...+    ...|++||.|.++-+.|+..|+.+.
T Consensus        76 -kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          76 -RFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             -eEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence             45555443    3699999999999999999998653

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=95.20  E-value=0.0055  Score=56.26  Aligned_cols=43  Identities=12%  Similarity=0.072  Sum_probs=38.9

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++.+|.+++.++|+..|||||.+|..+. ..+.+.|+..
T Consensus        14 ~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~   57 (200)
T cd04408          14 EEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENG   57 (200)
T ss_pred             CCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcC
Confidence            567999999999999999999999999999877 8888899863

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=95.19  E-value=0.15  Score=43.02  Aligned_cols=79  Identities=11%  Similarity=0.117  Sum_probs=52.5

Q ss_pred             ceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626         74 KSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus        74 KkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      ++..+.|=++.|.+-.-....  .......++|.+-.+.-..|...=+|+|.|.++. ..++|||++.++-.+||..|..
T Consensus        20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~-~s~i~qaes~~~K~eWl~~le~   96 (100)
T cd01226          20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFP-ESRIYQCESARIKTEWFEELEQ   96 (100)
T ss_pred             ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCCCcCcCceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHH
Confidence            456455555555544221111  1123567788764444333434568999999987 6899999999999999999987


Q ss_pred             hh
Q psy10626        154 HA  155 (344)
Q Consensus       154 aa  155 (344)
                      |.
T Consensus        97 a~   98 (100)
T cd01226          97 AK   98 (100)
T ss_pred             Hh
Confidence            75

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=95.18  E-value=0.0043  Score=56.48  Aligned_cols=44  Identities=7%  Similarity=0.119  Sum_probs=39.3

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++.++|+..|||||.+|..+. ..+...|++.+
T Consensus        14 ~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~   58 (194)
T cd04372          14 TQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDG   58 (194)
T ss_pred             CCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCC
Confidence            467999999999999999999999999998766 88999999754

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=95.05  E-value=0.12  Score=44.59  Aligned_cols=82  Identities=21%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             ceEEEEEeCCeEeEEecCchhh--cccCCCccEEecccEEEecC--C----CCCCcceEEEEeCCC-cEEEEECCCHHHH
Q psy10626         74 KSLYTVLCGQLLCFFKDQDDFV--ASKAATSPIIIFKARCEKAG--D----YTKRKHVFRLYCTDG-SEFLFLAPSETLM  144 (344)
Q Consensus        74 KkrwfVLrG~~L~fYKDeke~a--~~~a~~~~IsL~ga~v~ia~--d----y~KRKnVFrL~tpdg-~eyLFqAeSeeEM  144 (344)
                      +.||+.|=...|+++|...+..  +.......+.|....+....  |    ..+-+|.|.|...+| ..|.|.|.++++-
T Consensus        21 k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K  100 (116)
T cd01223          21 KLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLR  100 (116)
T ss_pred             ceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHH
Confidence            5899999999999999654421  11111234455544444321  2    135689999999886 7899999999999


Q ss_pred             HHHHHHHHHhh
Q psy10626        145 EDWVNKISFHA  155 (344)
Q Consensus       145 ~eWI~AIr~aa  155 (344)
                      ..|+.+|-.|.
T Consensus       101 ~kWm~al~~a~  111 (116)
T cd01223         101 KKWLKALEMAM  111 (116)
T ss_pred             HHHHHHHHHHH
Confidence            99999998664

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=95.03  E-value=0.0087  Score=55.38  Aligned_cols=47  Identities=6%  Similarity=-0.014  Sum_probs=40.7

Q ss_pred             ccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626        173 SQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS  219 (344)
Q Consensus       173 s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~  219 (344)
                      .....|.++++|.+++.++|+..|||||++|.... ..+...|++...
T Consensus         5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~   52 (206)
T cd04376           5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGID   52 (206)
T ss_pred             CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence            34567999999999999999999999999998877 888888887653

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=95.00  E-value=0.0075  Score=55.97  Aligned_cols=45  Identities=11%  Similarity=0.043  Sum_probs=40.1

Q ss_pred             cCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        174 QYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       174 ~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ....|.++++|.+++.++|+..|||||++|..+. +.+.+.|+..+
T Consensus        15 ~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~   60 (207)
T cd04379          15 SRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNS   60 (207)
T ss_pred             CCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCC
Confidence            3578999999999999999999999999999988 78888998643

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>PF15406 PH_6: Pleckstrin homology domain

Probab=94.91  E-value=0.066  Score=45.92  Aligned_cols=69  Identities=22%  Similarity=0.369  Sum_probs=47.7

Q ss_pred             EEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHH
Q psy10626         76 LYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS  152 (344)
Q Consensus        76 rwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr  152 (344)
                      -|+.-+|.-|.||....+.+   .+.+.|+|..++ ++..   ...+-|.+.. +|..+.|+|.+..|.+.||.+|.
T Consensus        42 AwAsqTGKGLLF~~K~~dka---~P~GiinLadas-e~~~---~g~~kF~f~~-~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   42 AWASQTGKGLLFFSKAEDKA---SPSGIINLADAS-EPEK---DGSNKFHFKI-KGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             hhhhccCceEEEEecccccc---CCcceEehhhcc-cccc---CCCceEEEEe-CCceeeeecCCHHHhccHHHHhh
Confidence            35555787777775332221   357889997653 3332   2345566666 78999999999999999999885

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=94.90  E-value=0.0056  Score=56.68  Aligned_cols=43  Identities=14%  Similarity=0.043  Sum_probs=38.5

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..|||||.+|..+. ..+.+.|++.
T Consensus        14 ~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~   57 (211)
T cd04409          14 DGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENG   57 (211)
T ss_pred             CCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcC
Confidence            467999999999999999999999999998776 8888999864

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=94.78  E-value=0.011  Score=53.48  Aligned_cols=45  Identities=9%  Similarity=0.035  Sum_probs=39.9

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS  219 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~  219 (344)
                      ...|.++++|.+++.++|+..|||||.+|..+. ..+...|++.+.
T Consensus        18 ~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~   63 (182)
T cd04381          18 IDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRES   63 (182)
T ss_pred             CcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCC
Confidence            467999999999999999999999999998777 888889987554

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>KOG0248|consensus

Probab=94.57  E-value=0.027  Score=60.87  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=58.3

Q ss_pred             cccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-ccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHH
Q psy10626         69 AVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF-KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDW  147 (344)
Q Consensus        69 ~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~-ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eW  147 (344)
                      ..+.|+++|+|++.++..||+......  ..+...+++. ++.+..+    .-...|++++.. ..|.|.++++.-..+|
T Consensus       261 ~~k~lkrr~~v~k~gqi~~y~~~~~~~--~~p~s~~d~~s~~~~~~~----~~s~~fqli~~t-~~~~~~~~s~~lt~dw  333 (936)
T KOG0248|consen  261 RIKSLKRRYVVFKNGQISFYRKHNNRD--EEPASKIDIRSVTKLEQQ----GAAYAFQLITST-DKMNFMTESERTTHDW  333 (936)
T ss_pred             HHHHHHhHheeeccceEEEEEcCCCcc--ccccCcccccccceeecc----chhHHhhhhhhc-eeEEEeccChhhhhhh
Confidence            468899999999999999998665421  1245566665 3433221    234678888765 6899999999999999


Q ss_pred             HHHHHHhhC
Q psy10626        148 VNKISFHAQ  156 (344)
Q Consensus       148 I~AIr~aaa  156 (344)
                      |+.|..+..
T Consensus       334 ~~iL~~~iK  342 (936)
T KOG0248|consen  334 VTILSAAIK  342 (936)
T ss_pred             HHHHHHHHH
Confidence            998876653

>KOG3523|consensus

Probab=94.35  E-value=0.051  Score=58.04  Aligned_cols=108  Identities=24%  Similarity=0.319  Sum_probs=67.1

Q ss_pred             CCCCeEEEEEEeeeeeeccCC-ccc-----cccCCceEEEEEeCCeEeEEecCchhhccc---CCCccEEecccE--EEe
Q psy10626         45 QLPPVEIQGVLERKHELQSGG-KKA-----AVRSWKSLYTVLCGQLLCFFKDQDDFVASK---AATSPIIIFKAR--CEK  113 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgG-KKs-----~~RsWKkrwfVLrG~~L~fYKDeke~a~~~---a~~~~IsL~ga~--v~i  113 (344)
                      .++.|-..-||.++++++... ++.     ..+.-+.+|+.|=++.|.+.|-+....-..   ++-..|.+..+.  -..
T Consensus       465 ~~PLiS~sRwLvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~l  544 (695)
T KOG3523|consen  465 AFPLVSQSRWLVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKL  544 (695)
T ss_pred             eeeeccchhhhhhccccceeecccccchhhcccccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCC
Confidence            344555667888777764432 221     135567999999999999988665432111   111222222221  001


Q ss_pred             cC---CCCCCcceEEEEeC---C--CcEEEEECCCHHHHHHHHHHHH
Q psy10626        114 AG---DYTKRKHVFRLYCT---D--GSEFLFLAPSETLMEDWVNKIS  152 (344)
Q Consensus       114 a~---dy~KRKnVFrL~tp---d--g~eyLFqAeSeeEM~eWI~AIr  152 (344)
                      ..   ....++|+|.|..-   +  ..+|||+|+++.||+.||.|+.
T Consensus       545 p~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~  591 (695)
T KOG3523|consen  545 PGGANSLSSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR  591 (695)
T ss_pred             CCCCcccccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence            11   12457899998853   2  2589999999999999999997

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=94.26  E-value=0.014  Score=53.00  Aligned_cols=43  Identities=14%  Similarity=0.074  Sum_probs=38.5

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..||+||.+|..+. ..+++.|++-
T Consensus        13 ~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~   56 (186)
T cd04407          13 TSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQAD   56 (186)
T ss_pred             CCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcC
Confidence            467999999999999999999999999999888 8888888764

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=94.19  E-value=0.01  Score=54.53  Aligned_cols=43  Identities=16%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.++|+..|||||.+|.... ..+...|++.
T Consensus        14 ~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~   57 (203)
T cd04378          14 DEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENG   57 (203)
T ss_pred             CCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcC
Confidence            567999999999999999999999999998866 7788888764

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=93.99  E-value=0.018  Score=53.83  Aligned_cols=43  Identities=14%  Similarity=0.036  Sum_probs=39.0

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.+.|+..|||||.+|.... +.+.+.|+.-
T Consensus        30 ~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~   73 (225)
T cd04396          30 GYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTP   73 (225)
T ss_pred             CCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccC
Confidence            567999999999999999999999999999877 8889999864

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4424|consensus

Probab=93.83  E-value=0.1  Score=55.53  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--CCCccEEecccEEEecCCCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--AATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      -.+.|||.|. |-.       .....=..+|++|=++.|.|.+-... ..+.  .....+++.|+.+. ..++...+|.|
T Consensus       270 reLiKEG~l~-Kis-------~k~~~~qeRylfLFNd~~lyc~~r~~-~~~~k~~~r~~~s~~~~~v~-~~~~~~~~~tF  339 (623)
T KOG4424|consen  270 RELIKEGQLQ-KIS-------AKNGTTQERYLFLFNDILLYCKPRKR-LPGSKYEVRARCSISHMQVQ-EDDNEELPHTF  339 (623)
T ss_pred             HHHhhcccee-eee-------ccCCCcceeEEEEehhHHHhhhhhhh-cccceeccceeeccCcchhc-ccccccCCceE
Confidence            3477999997 431       12355689999999988888776653 2221  12233556665432 23556789999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .|+-.+ +..-|+|.++.+-.+||++|+.++.
T Consensus       340 ~~~G~~-r~vel~a~t~~ek~eWv~~I~~~Id  370 (623)
T KOG4424|consen  340 ILTGKK-RGVELQARTEQEKKEWVQAIQDAID  370 (623)
T ss_pred             EEeccc-ceEEeecCchhhHHHHHHHHHHHHH
Confidence            999755 6789999999999999999997753

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=93.76  E-value=0.019  Score=52.24  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=38.7

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++..+|+..|||||.+|..+. ..+...|+.-
T Consensus        13 ~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~   56 (186)
T cd04406          13 RSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTD   56 (186)
T ss_pred             CCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccC
Confidence            467999999999999999999999999998887 8888888864

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=93.70  E-value=0.013  Score=53.86  Aligned_cols=43  Identities=7%  Similarity=0.016  Sum_probs=38.8

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++.+|.+++.++|+..|||||++|..+. +.+.+.|++-
T Consensus        14 ~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~   57 (196)
T cd04387          14 SKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTN   57 (196)
T ss_pred             CCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCC
Confidence            567999999999999999999999999999877 8888888864

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=93.46  E-value=0.57  Score=38.80  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCC-eEeEEecCchhhcccCCCccEEecc-cE-EEecCCCCCCcceEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-LLCFFKDQDDFVASKAATSPIIIFK-AR-CEKAGDYTKRKHVFR  125 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~-~L~fYKDeke~a~~~a~~~~IsL~g-a~-v~ia~dy~KRKnVFr  125 (344)
                      |.++|.+.++.         +. .+++|-++|... .|+|+ |.....    -.+-|.+.. .. ++.     +..+.|.
T Consensus         1 Il~~g~v~Kr~---------gl-f~kkR~LiLTd~PrL~yv-dp~~~~----~KgeIp~s~~~l~v~~-----~~~~~F~   60 (89)
T cd01262           1 ILKIGAVKKRK---------GL-FAKKRQLILTNGPRLIYV-DPVKKV----VKGEIPWSDVELRVEV-----KNSSHFF   60 (89)
T ss_pred             Cceeeeeeehh---------cc-ccceeeEEEecCceEEEE-cCCcCe----EEeEecccccceEEEE-----ecCccEE
Confidence            45788887553         22 568899999865 55444 443221    134455554 22 222     2346899


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.+++ ++|.|.-. ......|+.+|..+.
T Consensus        61 I~Tp~-rty~leD~-~~~a~~W~~~I~~~~   88 (89)
T cd01262          61 VHTPN-KVYSFEDP-KGRASQWKKAIEDLQ   88 (89)
T ss_pred             EECCC-ceEEEECC-CCCHHHHHHHHHHHh
Confidence            99887 78888644 467788999998653

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=93.20  E-value=0.026  Score=52.22  Aligned_cols=44  Identities=7%  Similarity=0.141  Sum_probs=38.6

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.+.++|.+++.++|+..|||||.+|.... +.+.+.|+.-+
T Consensus        25 ~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~   69 (213)
T cd04397          25 LRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNP   69 (213)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCC
Confidence            357999999999999999999999999997766 88888888643

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG3543|consensus

Probab=92.94  E-value=0.035  Score=59.68  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEe-----EEecCchhhcccCCCccEEecccEEEecC---CCCCCc
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC-----FFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRK  121 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~-----fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRK  121 (344)
                      ...|+|+-=      |+ ..++.|+++||||..-.-|     -|..++.     .+...|.|.|.+++...   +....+
T Consensus       465 khsgylyai------g~-nvwkrwkkrffvlvqvsqytfamcsyrekka-----epqel~qldgytvdytdp~pglqgg~  532 (1218)
T KOG3543|consen  465 KHSGYLYAI------GR-NVWKRWKKRFFVLVQVSQYTFAMCSYREKKA-----EPQELIQLDGYTVDYTDPSPGLQGGK  532 (1218)
T ss_pred             ccceeehhh------hh-HHHHHhHhhEEEEEEhhhhhhHhhhhhhccc-----ChHHHhhccCeeeccCCCCCccccch
Confidence            346888631      22 2489999999999753322     3333221     24678899999888543   224456


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +-|...- .|.+..|+.+|+.|..-|++|+-+|.+
T Consensus       533 ~ffnavk-egdtvifasddeqdr~lwvqamyratg  566 (1218)
T KOG3543|consen  533 HFFNAVK-EGDTVIFASDDEQDRHLWVQAMYRATG  566 (1218)
T ss_pred             HHHHHhc-cCceEEeccCchhhhhHHHHHHHHhhC
Confidence            6676543 568999999999999999999998876

>KOG2070|consensus

Probab=92.92  E-value=1.8  Score=45.92  Aligned_cols=81  Identities=12%  Similarity=0.208  Sum_probs=61.7

Q ss_pred             ceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626         74 KSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus        74 KkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      +.||++|=-+.|.|+.-...-. .--.++.+.+.|.+|....+-...++.|.|.-.--...+-.++.+.|+++|+.+++.
T Consensus       326 ~dRy~~LF~~~llflsvs~rMs-~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  326 KDRYLLLFPNVLLFLSVSPRMS-GFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK  404 (661)
T ss_pred             hhheeeeccceeeeeEeccccc-hhhhccccccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence            3889999988888887543321 111256788889888876666677889999877667788899999999999999995


Q ss_pred             hh
Q psy10626        154 HA  155 (344)
Q Consensus       154 aa  155 (344)
                      ..
T Consensus       405 ~~  406 (661)
T KOG2070|consen  405 QT  406 (661)
T ss_pred             cc
Confidence            43

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=92.64  E-value=0.046  Score=49.53  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=38.5

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.+.|+..||+||.+|.... ..+.+.|++.
T Consensus        13 ~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~   56 (185)
T cd04373          13 KPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQD   56 (185)
T ss_pred             CCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcC
Confidence            578999999999999999999999999998777 7788888864

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=92.37  E-value=0.049  Score=49.31  Aligned_cols=44  Identities=7%  Similarity=-0.016  Sum_probs=38.4

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.+.++|.+++.++|+..|||||.+|.... ..+...|++.+
T Consensus        14 ~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~   58 (187)
T cd04403          14 STVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDE   58 (187)
T ss_pred             CCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCC
Confidence            468999999999999999999999999999876 77777787644

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG1739|consensus

Probab=92.23  E-value=0.22  Score=52.24  Aligned_cols=94  Identities=20%  Similarity=0.352  Sum_probs=63.4

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      +.+...|.|.+...        -...|+.||+||+.+.|.+|+.+.+..-+  --+.|.|..+.+...   .-....|-|
T Consensus        22 gw~e~~G~lskwtn--------yi~gwqdRyv~lk~g~Lsyykse~E~~hG--cRgsi~l~ka~i~ah---EfDe~rfdI   88 (611)
T KOG1739|consen   22 GWVERCGVLSKWTN--------YIHGWQDRYVVLKNGALSYYKSEDETEHG--CRGSICLSKAVITAH---EFDECRFDI   88 (611)
T ss_pred             Cchhhcceeeeeec--------ccccccceEEEEcccchhhhhhhhhhhcc--cceeeEeccCCcccc---cchhheeee
Confidence            34556666653221        15789999999999999999988663211  123466665544322   223567888


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .+.+ ..+.+.|.+.++.+.||.+|.-.
T Consensus        89 svn~-nv~~lra~~~~hr~~w~d~L~wm  115 (611)
T KOG1739|consen   89 SVND-NVWYLRAQDPDHRQQWIDALEWM  115 (611)
T ss_pred             Eecc-ceeeehhcCcHHHHHHHHHHHHH
Confidence            8875 67888888888888999998643

>PF15411 PH_10: Pleckstrin homology domain

Probab=92.02  E-value=2.7  Score=36.06  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc---------cCCCccEEecccE-----E
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS---------KAATSPIIIFKAR-----C  111 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~---------~a~~~~IsL~ga~-----v  111 (344)
                      +|.....|-+....          ...|+.++|.|=..-|+++|+.......         ......+.|.|.+     -
T Consensus         4 fG~Lll~g~~~V~k----------~~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~   73 (116)
T PF15411_consen    4 FGELLLHGTLTVGK----------DDSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNIT   73 (116)
T ss_pred             ccceEEccEEEEEe----------CCcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeee
Confidence            55666667666432          2679999999999999999987654331         0112344444422     1


Q ss_pred             EecCCCCCCcceEEEEe---CCCcEEEEECCCHHHHHHHHHHH
Q psy10626        112 EKAGDYTKRKHVFRLYC---TDGSEFLFLAPSETLMEDWVNKI  151 (344)
Q Consensus       112 ~ia~dy~KRKnVFrL~t---pdg~eyLFqAeSeeEM~eWI~AI  151 (344)
                      ++........|+..|.-   ++-..|.|...++++|+.|-++|
T Consensus        74 ~v~~~s~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   74 EVSSSSKPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             eeeccCCCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence            12222234568888887   34568999999999999998875

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=91.80  E-value=0.051  Score=49.13  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=38.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.++|+..+||||++|.... +.+...|++.
T Consensus        13 ~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~   56 (184)
T cd04385          13 NDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKD   56 (184)
T ss_pred             CCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcC
Confidence            678999999999999999999999999998766 7788888763

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=91.78  E-value=0.036  Score=50.75  Aligned_cols=43  Identities=9%  Similarity=0.040  Sum_probs=38.0

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..||+||.+|..+. ..+...|++-
T Consensus        18 ~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g   61 (203)
T cd04386          18 REIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAG   61 (203)
T ss_pred             CCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCC
Confidence            457899999999999999999999999999887 7888888763

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=91.68  E-value=0.054  Score=50.18  Aligned_cols=43  Identities=14%  Similarity=0.054  Sum_probs=38.0

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.+.|+..|||||.+|.... +.+.+.|+..
T Consensus        20 ~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~   63 (216)
T cd04391          20 SKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAK   63 (216)
T ss_pred             CCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcc
Confidence            578999999999999999999999999999887 7777777754

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=91.44  E-value=0.052  Score=50.23  Aligned_cols=42  Identities=10%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-ccccccccc
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEE  216 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~  216 (344)
                      ..+..++++|.+++.+.|+..|||||++|..+. ..+...|.+
T Consensus        26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d   68 (203)
T cd04374          26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLD   68 (203)
T ss_pred             cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhC
Confidence            456778999999999999999999999997666 666665433

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=91.29  E-value=0.064  Score=50.12  Aligned_cols=43  Identities=7%  Similarity=0.016  Sum_probs=38.2

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..|||||.+|.... ..+.+.|+..
T Consensus        18 ~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~   61 (220)
T cd04375          18 QPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESS   61 (220)
T ss_pred             CCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcC
Confidence            467999999999999999999999999998777 7788888764

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=91.20  E-value=0.055  Score=49.56  Aligned_cols=45  Identities=9%  Similarity=0.091  Sum_probs=38.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPSP  220 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~~  220 (344)
                      ...|.++++|.+++.++|.. |||||.+|.... ..+...|++-..+
T Consensus        16 ~~iP~il~~~i~~l~~~g~~-EGIFR~sG~~~~i~~l~~~~d~~~~~   61 (195)
T cd04384          16 QDVPQVLKSCTEFIEKHGIV-DGIYRLSGIASNIQRLRHEFDSEQIP   61 (195)
T ss_pred             CCCChHHHHHHHHHHHcCCC-cCeeeCCCCHHHHHHHHHHHcCCCCC
Confidence            46799999999999999985 899999998766 8889999875443

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=91.05  E-value=0.081  Score=48.17  Aligned_cols=44  Identities=9%  Similarity=-0.102  Sum_probs=37.8

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++-+.|+..|||||.+|..+. ..+...|+...
T Consensus        16 ~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~   60 (196)
T cd04395          16 PYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGG   60 (196)
T ss_pred             CCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCC
Confidence            568999999999999999999999999998777 77777776543

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=90.99  E-value=0.053  Score=48.91  Aligned_cols=44  Identities=11%  Similarity=0.031  Sum_probs=37.9

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++.+.|+..||+||.+|.... ..+...|++-+
T Consensus        14 ~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~   58 (192)
T cd04398          14 DNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDP   58 (192)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCC
Confidence            467999999999999999999999999999876 77777777543

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=90.53  E-value=5.9  Score=33.77  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=50.4

Q ss_pred             ccCCceEEEEEeC--CeEeEEecCchhhc-ccCCCccEEecccEEEecC-CCC------CCcceEEEEeCCCcEEEEECC
Q psy10626         70 VRSWKSLYTVLCG--QLLCFFKDQDDFVA-SKAATSPIIIFKARCEKAG-DYT------KRKHVFRLYCTDGSEFLFLAP  139 (344)
Q Consensus        70 ~RsWKkrwfVLrG--~~L~fYKDeke~a~-~~a~~~~IsL~ga~v~ia~-dy~------KRKnVFrL~tpdg~eyLFqAe  139 (344)
                      ....+.|||-|..  ..|++...+..... .......|.|..-..-... ...      ...++|.|.+++ +..-|.|+
T Consensus        27 ~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~-R~L~l~a~  105 (123)
T PF12814_consen   27 SEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD-RSLDLTAP  105 (123)
T ss_pred             CCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC-eEEEEEeC
Confidence            5688999999986  45555443321111 0111233444432111111 111      134667777665 89999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy10626        140 SETLMEDWVNKISFHA  155 (344)
Q Consensus       140 SeeEM~eWI~AIr~aa  155 (344)
                      +.++-+-|+.+|+..+
T Consensus       106 s~~~~~~W~~aL~~L~  121 (123)
T PF12814_consen  106 SRERHEIWFNALRYLL  121 (123)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998654

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=89.65  E-value=0.14  Score=47.60  Aligned_cols=45  Identities=7%  Similarity=0.077  Sum_probs=39.3

Q ss_pred             ccCCCcchhhhhcccccccccCCCccccCCCccc-----ccccccccccC
Q psy10626        173 SQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSN-----LRNNHTSYEEL  217 (344)
Q Consensus       173 s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~-----~~~~~~~~~~~  217 (344)
                      .....|.+..+|.+++.++|+.++|+||.+|...     ++.+.+.+++-
T Consensus        46 ~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~   95 (220)
T cd04380          46 VPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTG   95 (220)
T ss_pred             CccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCC
Confidence            3468899999999999999999999999999988     67777777764

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=89.13  E-value=1.6  Score=36.66  Aligned_cols=88  Identities=17%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchh--h-cccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF--V-ASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~--a-~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      ..++|+|..=+          .+.=+.+-+.|=++.|.+-+=....  . ....-.-.|+|.+-.+...        .|+
T Consensus         3 Lv~eg~lvel~----------~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~   64 (96)
T cd01228           3 LVKDSFLVELV----------EGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFR   64 (96)
T ss_pred             ccccceeeeeh----------hCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------hhh
Confidence            45788887321          2223556677777777765532111  1 1111122466665433221        267


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +...++..|.|.|.|..|-.+|+.+|+..
T Consensus        65 ~~~~~~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          65 IHNKNGKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             ccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence            76767899999999999999999999753

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=88.66  E-value=0.13  Score=46.50  Aligned_cols=44  Identities=5%  Similarity=0.029  Sum_probs=37.9

Q ss_pred             CCCcchhhhhcccccccc-cCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEE-VGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g-~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++.+|.+++.+.| ...||+||.+|..+. ..+.+.|++.+
T Consensus        20 ~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~   65 (190)
T cd04400          20 RDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEY   65 (190)
T ss_pred             CCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCC
Confidence            467999999999988765 799999999999777 88888898754

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=88.56  E-value=0.14  Score=46.27  Aligned_cols=43  Identities=14%  Similarity=0.061  Sum_probs=37.4

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..+|+||.+|..+. ..+.+.|++.
T Consensus        13 ~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~   56 (186)
T cd04377          13 RSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTD   56 (186)
T ss_pred             CCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCC
Confidence            467999999999999999999999999998887 6777777654

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=88.51  E-value=0.15  Score=47.30  Aligned_cols=39  Identities=8%  Similarity=-0.036  Sum_probs=33.9

Q ss_pred             chhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        179 TIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       179 ~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ..+-+|.+++.+ |+..|||||+||.... +.+.+.|+...
T Consensus        11 ~~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~   50 (208)
T cd04392          11 AQIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGT   50 (208)
T ss_pred             HHHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCC
Confidence            367899999988 9999999999999777 89999998643

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=88.37  E-value=0.16  Score=46.19  Aligned_cols=43  Identities=7%  Similarity=-0.034  Sum_probs=37.1

Q ss_pred             CCCcchhhhhccccc-ccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIF-EEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~-e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+..+|.+++. .+|+..|||||.+|.... ..+.+.|++.
T Consensus        19 ~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~   63 (187)
T cd04389          19 LKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQW   63 (187)
T ss_pred             CCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcC
Confidence            467999999999865 579999999999999877 8888888874

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=88.26  E-value=0.15  Score=46.33  Aligned_cols=43  Identities=2%  Similarity=-0.031  Sum_probs=38.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+..+|.+++.++|+..||+||.+|..+. ..+...|+..
T Consensus        13 ~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~   56 (192)
T cd04402          13 DNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSG   56 (192)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCC
Confidence            467999999999999999999999999999996 7777777653

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=87.78  E-value=0.16  Score=46.02  Aligned_cols=43  Identities=5%  Similarity=-0.000  Sum_probs=38.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..||+||.+|-.+. ..+...|++-
T Consensus        18 ~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~   61 (189)
T cd04393          18 NGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG   61 (189)
T ss_pred             CCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCC
Confidence            357999999999999999999999999999888 7778888763

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=87.75  E-value=0.16  Score=46.07  Aligned_cols=43  Identities=5%  Similarity=0.071  Sum_probs=38.0

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.+.++|.+++.++|+..||+||.+|..+. ..+.+.|++.
T Consensus        21 ~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~   64 (195)
T cd04404          21 EPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG   64 (195)
T ss_pred             CCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCC
Confidence            467999999999999999999999999999876 7787888763

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=87.61  E-value=3.4  Score=36.45  Aligned_cols=80  Identities=14%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             ceEEEEEeCCeEeEEecCchhhc-----ccCCCccEEecccEEEecCCCCCCcceEEEEeCCC-cEEEEECCCHHHHHHH
Q psy10626         74 KSLYTVLCGQLLCFFKDQDDFVA-----SKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDG-SEFLFLAPSETLMEDW  147 (344)
Q Consensus        74 KkrwfVLrG~~L~fYKDeke~a~-----~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg-~eyLFqAeSeeEM~eW  147 (344)
                      +.|++.|=...+.|.|-..+...     .......|.+..-.+....  ..-...|+|...++ ..|.|||.|.+.-+.|
T Consensus        30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v--~gd~~kFeiw~~~~~~~yilqA~t~e~K~~W  107 (133)
T cd01227          30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENV--KGDTKKFEIWYNAREEVYILQAPTPEIKAAW  107 (133)
T ss_pred             ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccC--CCCccEEEEEeCCCCcEEEEEcCCHHHHHHH
Confidence            57888888888888886543211     1111122333222111111  12244677776543 5899999999999999


Q ss_pred             HHHHHHhh
Q psy10626        148 VNKISFHA  155 (344)
Q Consensus       148 I~AIr~aa  155 (344)
                      +..|+...
T Consensus       108 v~~I~~iL  115 (133)
T cd01227         108 VNEIRKVL  115 (133)
T ss_pred             HHHHHHHH
Confidence            99998653

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=87.27  E-value=0.25  Score=45.48  Aligned_cols=43  Identities=9%  Similarity=0.040  Sum_probs=36.6

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.+.++|.+++.+ ++..|||||.+|.... ..+...|++-.
T Consensus        18 ~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~   61 (202)
T cd04394          18 GNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGE   61 (202)
T ss_pred             CCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCC
Confidence            4679999999999854 6999999999998887 88888888743

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=87.22  E-value=0.21  Score=42.74  Aligned_cols=43  Identities=12%  Similarity=0.111  Sum_probs=37.6

Q ss_pred             cchhhhhcccccccccCCCccccCCCcccc-cccccccccCCCC
Q psy10626        178 TTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPSP  220 (344)
Q Consensus       178 p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~~  220 (344)
                      |.+..+|.+++.+.|+..+|+||.+|.... ..+.+.++.....
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~   44 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDI   44 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCC
Confidence            567889999999999999999999999887 8888888877654

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>PF15404 PH_4: Pleckstrin homology domain

Probab=85.57  E-value=0.93  Score=42.04  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=27.4

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCc
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQD   92 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDek   92 (344)
                      +.|.|++|.        ..-..+++||+||+.+.|++|..-.
T Consensus         1 ~sG~LY~K~--------~khs~F~~~~vvL~~G~Li~f~~~~   34 (185)
T PF15404_consen    1 MSGYLYQKP--------RKHSTFKKYFVVLIPGFLILFQLFK   34 (185)
T ss_pred             CCceeeecC--------CCCCCceEEEEEEeCCEEEEEEEEe
Confidence            468999875        1356799999999999999998743

>KOG4269|consensus

Probab=82.77  E-value=0.36  Score=53.82  Aligned_cols=43  Identities=7%  Similarity=-0.020  Sum_probs=39.5

Q ss_pred             CCCcchhhhhccccc-ccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIF-EEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~-e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      +-.|.+|-||++-+- .+|..|+||||++|.+.. +.|+..|++-
T Consensus       917 s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~  961 (1112)
T KOG4269|consen  917 SGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDEN  961 (1112)
T ss_pred             cCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccc
Confidence            567999999999977 799999999999999998 9999999986

>KOG1737|consensus

Probab=82.16  E-value=1.5  Score=48.69  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=84.5

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      .....+|||.+..        .-.+.|.++||+|.++.|.||++......  ...+.+.+..+.+.-   ....  -+.+
T Consensus        75 ~~~~~~g~l~k~~--------n~~~~~~~r~f~l~~g~ls~~~~~~~~~~--~~~~~~~~~~a~i~~---~~~~--~~~~  139 (799)
T KOG1737|consen   75 SGASLEGILLKWR--------NYSKGPSSRWFVLSGGLLSYYFDNSFSKT--TCGGGINLVTAWIQN---GERM--DICS  139 (799)
T ss_pred             ccccccceeeccc--------cccCCcccceEEecCcceeeeccCCcccc--CCCCccccccccccc---CCCc--ccch
Confidence            3456789998542        34689999999999999999998865332  122344443332211   1111  1111


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCCCCcccccccccccccCCCcch--hh------hhcccccccccCCCcc
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTI--QE------KKKTSIFEEEVGPGGY  198 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~se~L~s~e~~~~~s~~t~p~~--~e------k~~d~~~e~g~~~~Gl  198 (344)
                      ...+...|+..+.+..+-+.|+.++..+-.....+. ..++..... ..+....  .+      ..-+...+.++...++
T Consensus       140 ~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (799)
T KOG1737|consen  140 VDGSCQIYLVELSKKLQRQGWLHALELAPLIAVEQT-SEYENENKS-VMTKRIPLSIAVISVAQETREINVDVLRLLSSL  217 (799)
T ss_pred             hhcccchhhhhhhHHHhhcchhhhhhhccchhhhcc-ccccccccc-cccccccchhhhhcccccchhhhhhhhhhcccc
Confidence            111135688888999999999999987743332222 211111000 0000000  00      1112344566777888


Q ss_pred             ccCCCcccccccccccccC
Q psy10626        199 INSDGYSNLRNNHTSYEEL  217 (344)
Q Consensus       199 ~~~~g~~~~~~~~~~~~~~  217 (344)
                      +..-+++.+|.+....+..
T Consensus       218 ~~~~~~~~~r~l~~~~~~~  236 (799)
T KOG1737|consen  218 PNLTGQLLLRELNALLEDK  236 (799)
T ss_pred             ccchhhhhhhhhccccccc
Confidence            8888888877775444433

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=81.61  E-value=15  Score=32.20  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=24.8

Q ss_pred             CCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        118 TKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       118 ~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .+..+-|.+..-  .|..|.|.|+|+.+.++|+++|..+
T Consensus        96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            344555666554  3456899999999999999999754

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=81.40  E-value=0.53  Score=41.11  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=37.3

Q ss_pred             CcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCCC
Q psy10626        177 GTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPSP  220 (344)
Q Consensus       177 ~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~~  220 (344)
                      .|.+.++|.+++.+.|...+|+||.+|.... ..+...+++....
T Consensus         3 vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~   47 (174)
T smart00324        3 IPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDP   47 (174)
T ss_pred             CChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCC
Confidence            5889999999999999999999999999876 6777777765443

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG1264|consensus

Probab=81.19  E-value=2.1  Score=47.78  Aligned_cols=54  Identities=19%  Similarity=0.148  Sum_probs=40.2

Q ss_pred             EEecccEEEec-CCCCCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        104 IIIFKARCEKA-GDYTKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       104 IsL~ga~v~ia-~dy~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      .++.-+.+..+ .+...+-+||.|...  +...|+|.|++++|+.+|+++|+++++.
T Consensus       856 ~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~  912 (1267)
T KOG1264|consen  856 LDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK  912 (1267)
T ss_pred             ccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence            34443433333 355678899998864  4468999999999999999999988753

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=81.07  E-value=0.36  Score=40.92  Aligned_cols=42  Identities=10%  Similarity=0.051  Sum_probs=33.4

Q ss_pred             cchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626        178 TTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS  219 (344)
Q Consensus       178 p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~  219 (344)
                      |.+...|.+.+.+.|+..+|+||.+|...- ..+.+.|+.-..
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~   43 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEP   43 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTT
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhc
Confidence            567889999999999999999999998766 777777776554

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
1btn_A	106	Structure Of The Binding Site For Inositol Phosphat		9e-16
1wjm_A	123	Solution Structure Of Pleckstrin Homology Domain Of		3e-15
1dro_A	122	Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTIO		5e-12
2j59_M	168	Crystal Structure Of The Arf1:arhgap21-Arfbd Comple		4e-06
2dhj_A	125	Solution Structure Of The Ph Domain Of Rho Gtpase A		1e-05
3pp2_A	124	Crystal Structure Of The Pleckstrin Homology Domain		1e-04

>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A Ph Domain Length = 106

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS--PIIIFK 108
           ++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     S  P+ + +
Sbjct: 1   MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60
Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
           A CE A DY K+KHVF+L  +DG+E+LF A  +  M  W+  IS
Sbjct: 61  AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104

>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human Beta Iii Spectrin Length = 123

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 50  EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS------- 102
           +++G+L RK E+++ GKKAA RSW+++Y VL    L F+KD      +KAA++       
Sbjct: 9   QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKD------AKAASAGVPYHGE 62
Query: 103 -PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
            P+ + +A+   A DY KRKHVF+L   DG E+LF A  E  M  W+  ++      PS
Sbjct: 63  VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121

>pdb|1DRO|A Chain A, Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTION Protein Length = 122

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK--- 108
           +G + RKHE  S  KKA+ RSW  +Y       + F+KDQ  +      ++P + F+   
Sbjct: 11  EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGY-----KSNPELTFRGEP 65
Query: 109 ------ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
                 A  E A DYTK+KHV R+   +G+ FL  A  +T M  WV  +
Sbjct: 66  SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSL 114

>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 52  QGVLERKHELQSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKA 109
           +G L  +  +   GK+   ++R WK +Y VL G  L  +KD+ +         PI +   
Sbjct: 6   EGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNAC 65
Query: 110 RCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
             + +   TKRK+VFRL  +D  E LF A     M  W+  I   + L
Sbjct: 66  LIDISYSETKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESSNL 112

>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase Activating Protein 21 From Human Length = 125

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 68  AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY 127
            ++R WK +Y VL G  L  +KD+ +         PI +     + +   TKRK+VFRL 
Sbjct: 30  GSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLT 89
Query: 128 CTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
            +D  E LF A     M  W+  I   + L
Sbjct: 90  TSD-CECLFQAEDRDDMLAWIKTIQESSNL 118

>pdb|3PP2|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Arhgap27 Length = 124

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 53  GVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA------SKAATSPIII 106
           GVL R  +    GK+   + W + +TVL G +L FFKD     A      SK +T P   
Sbjct: 12  GVLHRT-KTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFST-PEYT 69
Query: 107 FKARCEKAG----DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
            + R         D + RK+V  L   DGSE+L    SE ++  W   I+
Sbjct: 70  VELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	2e-38
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	1e-37
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	2e-33
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	6e-33
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	2e-31
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	9e-28
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	9e-25
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	4e-23
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-20
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	3e-15
3cxb_B	112	Pleckstrin homology domain-containing family M mem	5e-15
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	4e-12
2d9y_A	117	Pleckstrin homology domain-containing protein fami	7e-12
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	2e-11
2yry_A	122	Pleckstrin homology domain-containing family A mem	2e-11
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	4e-11
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	5e-11
2dkp_A	128	Pleckstrin homology domain-containing family A mem	6e-11
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	7e-11
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-09
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	4e-09
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	7e-09
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	9e-09
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	9e-08
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	2e-07
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	3e-07
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	5e-07
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	6e-07
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	1e-06
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	2e-06
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	2e-06
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	5e-06
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	6e-06
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	6e-06
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	1e-05
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	1e-05
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	1e-05
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	1e-05
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	3e-05
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	4e-05
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	7e-05
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	9e-05
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	1e-04
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	1e-04
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	1e-04
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	1e-04
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	2e-04
2d9v_A	130	Pleckstrin homology domain-containing protein fami	2e-04
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	5e-04
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	5e-04
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	7e-04

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score =  132 bits (333), Expect = 2e-38
 Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA--ATSPI 104
              +++G+L RK E+++ GKKAA RSW+++Y VL    L F+KD     A        P+
Sbjct: 6   SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65

Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
            + +A+   A DY KRKHVF+L   DG E+LF A  E  M  W+  ++      PS
Sbjct: 66  SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score =  130 bits (327), Expect = 1e-37
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS---- 102
                +G + RKHE  S  KKA+ RSW  +Y       + F+KDQ  + ++   T     
Sbjct: 6   AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65

Query: 103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
              +  A  E A DYTK+KHV R+   +G+ FL  A  +T M  WV  +   +  
Sbjct: 66  SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score =  118 bits (298), Expect = 2e-33
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA--ATSPIIIFK 108
           ++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +     +  P+ + +
Sbjct: 1   MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60

Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
           A CE A DY K+KHVF+L  +DG+E+LF A  +  M  W+  IS
Sbjct: 61  AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score =  118 bits (296), Expect = 6e-33
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 45  QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA----- 99
           +   ++  GVL R       GK+   + W + +TVL G +L FFKD     A        
Sbjct: 4   RTKTLDKAGVLHRTKTAD-KGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSK 62

Query: 100 ---ATSPIIIFKARCEKA-GDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
                  + +  A    A  D + RK+V  L   DGSE+L    SE ++  W   I+
Sbjct: 63  FSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score =  114 bits (286), Expect = 2e-31
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK-------A 99
             VE  G+L      Q G  +   ++W   + VL G  L F+++      S         
Sbjct: 10  HEVEKSGLLNMTKIAQGG--RKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSR 67

Query: 100 ATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             S + +  A        + R++V  +    G EFL  +  ET +  W   + 
Sbjct: 68  PESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALR 120

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score =  105 bits (263), Expect = 9e-28
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 49  VEIQGVLERKHELQSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
              +G L  +  +   GK+   ++R WK +Y VL G  L  +KD+ +         PI +
Sbjct: 3   AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 62

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
                + +   TKRK+VFRL  T   E LF A     M  W+  I   + L   
Sbjct: 63  NACLIDISYSETKRKNVFRL-TTSDCECLFQAEDRDDMLAWIKTIQESSNLNEE 115

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 96.6 bits (240), Expect = 9e-25
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 9/126 (7%)

Query: 50  EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQD----DFVASKAATSPII 105
            ++G L RK  L+ G +K A+ SW   + VL G  L ++  +     D    K+     +
Sbjct: 2   TMEGPLRRKTLLKEG-RKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60

Query: 106 IFKARCEKAGDYTKRKHVFRLYCTD-GSEFLFLAPSETLMEDWVNKISFHAQL---PPSL 161
                  +  D  +   +F+L   D G+ + F   S      W   +    +        
Sbjct: 61  SIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQVPA 120

Query: 162 QLLSYD 167
            L+S++
Sbjct: 121 NLMSFE 126

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 95.8 bits (237), Expect = 4e-23
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 45  QLPPVEIQGVLERKHELQSGGKK----AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAA 100
           +   V   G L  K  +    ++     A R WK  +  L G  L F++        + +
Sbjct: 7   EQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNS 66

Query: 101 T--SPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP 158
                +    +  +   ++ K++HVF L  + G  +LF A S+T +E+WV  I       
Sbjct: 67  APRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL 126

Query: 159 PSLQLLSYDDSQ 170
            + +    D  +
Sbjct: 127 FAKKHGKEDTVR 138

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 88.1 bits (217), Expect = 3e-20
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 47  PPVEIQGVLERKHEL--QSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS 102
             V   G L  K+ L  +   K   A  R WK  +  L G  L F++          +  
Sbjct: 9   GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVP 68

Query: 103 --PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
              + +  +  +   ++ K+  VF L  + G  FLF   S+T +E+W+  I        +
Sbjct: 69  KHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVA 128

Query: 161 LQ 162
             
Sbjct: 129 RH 130

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
               + G L R         K + + WK L+ V+  ++L  +   +D     AA     +
Sbjct: 6   SGSTMSGYLYRS--------KGSKKPWKHLWFVIKNKVLYTYAASED----VAALESQPL 53

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
                    D      VF+L       ++F A      + W++   
Sbjct: 54  LGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQ 99

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 69.4 bits (170), Expect = 5e-15
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
           +G+L  K    +G        WK+ + VL   +L  + D+ D          + +   +C
Sbjct: 3   EGMLHYK----AGTSYLGKEHWKTCFVVLSNGILYQYPDRTD----VIPLLSVNMGGEQC 54

Query: 112 EKAG--DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP 159
                 + T R H F++  +D       A SE  M +W+  +        
Sbjct: 55  GGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGV 104

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 136

 Score = 62.2 bits (150), Expect = 4e-12
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 7/115 (6%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLC------GQLLCFFKDQDDFVASKAATSPII 105
           +G L       +         W+    +L          L FF         K +     
Sbjct: 21  EGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKA-SRPKVSIPLSA 79

Query: 106 IFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
           I + R     +  ++ + F L   +G+E++           WV  I       PS
Sbjct: 80  IIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSGPS 134

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
            PV   G L ++         + V+ W   + VL  + L ++KD+ +   S   + P++ 
Sbjct: 9   APVTKAGWLFKQ-------ASSGVKQWNKRWFVLVDRCLFYYKDEKE--ESILGSIPLLS 59

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF--HAQLPPS 160
           F+    +  D   RKH F+        + F A S    E W+  +      Q  PS
Sbjct: 60  FRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPS 115

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 11/131 (8%)

Query: 44  DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
             LP V   G LE++              W+  +  L   +  ++    D    K     
Sbjct: 12  QDLPFVIKAGYLEKR----RKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGE 63

Query: 104 IIIFKARCEKAG---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
             I               K+   F +   D   + F A S    E+WV ++ F  Q   S
Sbjct: 64  FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS 123

Query: 161 LQLLSYDDSQK 171
             +   D+ + 
Sbjct: 124 DVIPEDDEERG 134

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
           PV   G L ++         + V+ W   + VL  + L ++KD+ +   S   + P++ F
Sbjct: 21  PVTKAGWLFKQ-------ASSGVKQWNKRWFVLVDRCLFYYKDEKE--ESILGSIPLLSF 71

Query: 108 KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
           +    +  D   RKH F+        + F A S    E W+  +   A++
Sbjct: 72  RVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 66  KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
                  WKS +  +    L F++D++    SK A  P+ +               + FR
Sbjct: 15  NVLVNSQWKSRWCSVRDNHLHFYQDRNR---SKVAQQPLSLVGCEVVPDPS-PDHLYSFR 70

Query: 126 LYCTDGSEFLFLAPSETLMEDWVNKI 151
           +           A S   M  W+  +
Sbjct: 71  ILHKGEELAKLEAKSSEEMGHWLGLL 96

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
           V  QG LE+K    S         W+  + V+   L  ++ ++      K      +I  
Sbjct: 3   VIKQGYLEKK----SKDHSFFGSEWQKRWCVVSRGLFYYYANEKS----KQPKGTFLIKG 54

Query: 109 ARCEKAG---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
                A      +K++  F L   D   + F A S     DWV++ISF
Sbjct: 55  YSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISF 102

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 24  SFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ 83
           S ++ +R+ S ++       +   PV  +G L ++           ++ WK  + VL   
Sbjct: 3   SGSSGKRSNSIKR-------NPNAPVVRRGWLYKQ-----DST--GMKLWKKRWFVLSDL 48

Query: 84  LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETL 143
            L +++D+ +       +  +  F+     + D+  RK+ F+    +   + F   +   
Sbjct: 49  CLFYYRDEKE--EGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKE 106

Query: 144 MEDWVNKISFHAQLPPS 160
           ME W+  +   A +  S
Sbjct: 107 MELWMKAMLDAALVQTS 123

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 11/119 (9%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
           P    +G L +K     G       +WK ++ VL    + F+K + D   +       + 
Sbjct: 3   PKRIREGYLVKK-----GSV---FNTWKPMWVVLLEDGIEFYKKKSD---NSPKGMIPLK 51

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLS 165
                    D+ KR  VF++  T   +  F A      + WV  I+   +    L+   
Sbjct: 52  GSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIEGLEHHH 110

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 45  QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI 104
              P+  +G L  K        ++  R ++  +T L G  L F+ D+   +        +
Sbjct: 14  TALPLYFEGFLLIK--------RSGYREYEHYWTELRGTTLFFYTDKKSIIYVDK----L 61

Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA--QLPPSLQ 162
            I    C    + T++            E      +    E+W   I       +P ++ 
Sbjct: 62  DIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVS 121

Query: 163 LL 164
           LL
Sbjct: 122 LL 123

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 11/116 (9%)

Query: 44  DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
             LP V   G LE++              W+  +  L   +  ++    D    K     
Sbjct: 101 QDLPFVIKAGYLEKR----RKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGE 152

Query: 104 IIIFKARCEKAG---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
             I               K+   F +   D   + F A S    E+WV ++ F  Q
Sbjct: 153 FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 208

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
           PV I+G L ++           +R WK  + VL G  L ++KD  +   S   +  +  +
Sbjct: 10  PVHIRGWLHKQ-----DSS--GLRLWKRRWFVLSGHCLFYYKDSRE--ESVLGSVLLPSY 60

Query: 108 KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
             R +  G    R+  F         ++  A +   +  W+  + 
Sbjct: 61  NIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALG 105

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 52.7 bits (126), Expect = 9e-09
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 17/135 (12%)

Query: 44  DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC------GQLLCFFKDQDDFVAS 97
            Q   +   G L + +   +      +RS+K  +  L         L  +  ++      
Sbjct: 13  SQKGGITKHGWLYKGNM--NSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---- 66

Query: 98  KAATSP--IIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155
                P   I   +      +   R+  F L   D S +L  A SE  ME+W+  ++   
Sbjct: 67  ---KEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123

Query: 156 QLPPSLQLLSYDDSQ 170
           QL     +    +  
Sbjct: 124 QLNFEAAMQEKRNGD 138

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 17/97 (17%)

Query: 70  VRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPI--------IIFKARCEKAGDYTK 119
            ++WK    +L      L ++              P+        ++        G  ++
Sbjct: 20  RKNWKVRKFILREDPAYLHYYDPAGA-------EDPLGAIHLRGCVVTSVESNSNGRKSE 72

Query: 120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
            +++F +   D   +   A +     +W+  I   ++
Sbjct: 73  EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 109

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
             V  QG + +K     G +    ++W   + VL   ++ ++  +D           ++ 
Sbjct: 6   SGVLKQGYMMKK-----GHR---RKNWTERWFVLKPNIISYYVSEDL---KDKKGDILLD 54

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
                E   D   +K +F +       F   A  +   ++W+  I     L
Sbjct: 55  ENCCVESLPDKDGKKCLFLV-KCFDKTFEISASDKKKKQEWIQAIHSTIHL 104

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 25/124 (20%)

Query: 44  DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG--QLLCFFKDQDDFVASKAAT 101
           +    +  QG L ++     G +    ++WK    +L      L ++             
Sbjct: 13  EFRGVIIKQGCLLKQ-----GHR---RKNWKVRKFILREDPAYLHYYDPAGA-------E 57

Query: 102 SPI--------IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
            P+        ++        G  ++ +++F +   D   +   A +     +W+  I  
Sbjct: 58  DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQM 117

Query: 154 HAQL 157
            ++ 
Sbjct: 118 ASRT 121

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 64  GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIFKARCEKAGDYTKRKH 122
           G    + R+WK  + VL    L +F++  +             +     ++  D T +++
Sbjct: 70  GSSTLSRRNWKKRWFVLRQSKLMYFENDSE-------EKLKGTVEVRSAKEIIDNTNKEN 122

Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQE 182
              +   D + F  +A S      W + +S         ++    D Q   Q    T+  
Sbjct: 123 GIDIIMADRT-FHLIAESPEDASQWFSVLSQVHSSTDQ-EIREMHDEQANPQNAVGTLDV 180

Query: 183 KKKTSI 188
               S+
Sbjct: 181 GLIDSV 186

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 46.5 bits (110), Expect = 6e-07
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 66  KKAAVRSWKSLYTVLC---GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKH 122
              +  +W  ++  +     Q+L       D       T P+   K       +     H
Sbjct: 16  LSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRL--PRTIPLPSCKLSVPDPEERLDSGH 73

Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
           V++L       +   A S  L + W+  +S  A   PS
Sbjct: 74  VWKLQ-WAKQSWYLSASSAELQQQWLETLSTAAHSGPS 110

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 70  VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIFKARCE--KAGDYTKRKHVFRL 126
           V++WK+ +  L    L +FKDQ           PI I+    C   +     +R + F L
Sbjct: 31  VKTWKTRWFTLHRNELKYFKDQMS-------PEPIRILDLTECSAVQFDYSQERVNCFCL 83

Query: 127 YCTDGSEFLFLAPSETLMEDWVNKI 151
                + F   A +    ++W+  +
Sbjct: 84  VFPFRT-FYLCAKTGVEADEWIKIL 107

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 39  KLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVL---CGQLLCFFKDQDDFV 95
            L  ++    V  QG L ++     G K    ++WK    VL      L  +   +++  
Sbjct: 8   SLSTVELSGTVVKQGYLAKQ-----GHK---RKNWKVRRFVLRKDPAFLHYYDPSKEENR 59

Query: 96  ASK----AATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
                    +    +             + ++F++   D + +   A S+    +W+  I
Sbjct: 60  PVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 119

Query: 152 SFHAQLPPS 160
                 P S
Sbjct: 120 KKLTSGPSS 128

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 29/125 (23%)

Query: 44  DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
           D        G LER+ +         ++S+   Y VL    L  FK  D     K    P
Sbjct: 1   DHPFTEIKSGFLERRSKF--------LKSYSKGYYVLTPNFLHEFKTADR----KKDLVP 48

Query: 104 IIIF-----------KARCEKAGDYTKRKHVFRLYCTD------GSEFLFLAPSETLMED 146
           ++             +     + + T     F L+         G  ++F A S   M  
Sbjct: 49  VMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMS 108

Query: 147 WVNKI 151
           W + +
Sbjct: 109 WFDNL 113

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 70  VRSWKSLYTVLCGQ-LLCFFKDQDD------FVASKAATSPIIIFKARCEKAGDYTKRKH 122
           ++ WK  +  L     L ++ DQ                +     + R  +  D   +  
Sbjct: 18  LKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDC 77

Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
           + ++ C DG      A S      W   + 
Sbjct: 78  MLQIVCRDGKTISLCAESTDDCLAWKFTLQ 107

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 19/103 (18%)

Query: 70  VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIF----KARCEKAGDYTKRKHVF 124
           V++W+  Y VL  Q L ++KD++D       T P   ++      +          K VF
Sbjct: 21  VKNWQQRYFVLRAQQLYYYKDEED-------TKPQGCMYLPGCTIKEIATNPEEAGKFVF 73

Query: 125 RLYCTDGSE-------FLFLAPSETLMEDWVNKISFHAQLPPS 160
            +      +       ++ +A S+  ME+WV  +   A   PS
Sbjct: 74  EIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 30/128 (23%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
            VE +G L      +         +W   + VL G  + ++   DD    K     I + 
Sbjct: 4   SVEERGFL---TIFEDVSG---FGAWHRRWCVLSGNCISYWTYPDD-EKRKNPIGRINLA 56

Query: 108 KARCEKAG----DYTKRKHVFRLYCTDGSE-------------------FLFLAPSETLM 144
                +      ++  R++ F L                              A ++   
Sbjct: 57  NCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEER 116

Query: 145 EDWVNKIS 152
           + W+ K++
Sbjct: 117 DLWMQKLN 124

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR 110
           ++GVL +            +  W+  + VL   +L ++  QDD    K +   I +    
Sbjct: 1   MEGVLYKWTNY--------LTGWQPRWFVLDNGILSYYDSQDDV--CKGSKGSIKMAVCE 50

Query: 111 CEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
            +    ++       L       F   A +    + W+  +     
Sbjct: 51  IKV---HSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKA 93

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 65  GKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF 124
            +K  ++ ++  + V     L ++K QD+  A       + +         + + +K   
Sbjct: 20  PRKLTLKGYRQHWVVFKETTLSYYKSQDE--APGDPIQQLNLKGCEVVPDVNVSGQKFCI 77

Query: 125 RLY---CTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
           +L        SE       E     W+      ++
Sbjct: 78  KLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASK 112

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 70  VRSWKSLYTVLC-GQLLCFFKDQDDFVASKAATSPI-IIFKARCEKAGDYTKRKHVFRLY 127
           +++W+  Y +L        +K++          +P+     A+C+       R + F + 
Sbjct: 21  IKTWRPRYFLLKNDGTFIGYKERPQ--DVDQREAPLNNFSVAQCQLMKTERPRPNTFIIR 78

Query: 128 C---TDGSEFLFLAPSETLMEDWVNKIS 152
           C   T   E  F   +    E+W   I 
Sbjct: 79  CLQWTTVIERTFHVETPEEREEWTTAIQ 106

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPI- 104
             ++ G L +       G K  +R WKS +     +   L + +   D        +P+ 
Sbjct: 7   GKKLCGYLSKF------GGKGPIRGWKSRWFFYDERKCQLYYSRTAQD-------ANPLD 53

Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
            I  +           + +F +  T        A ++  M  W+ ++ 
Sbjct: 54  SIDLSSAVFDCKADAEEGIFEIK-TPSRVITLKAATKQAMLYWLQQLQ 100

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 22/115 (19%)

Query: 44  DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
            Q   V   G   ++     G     +++WK  Y  L    + +FK + +         P
Sbjct: 9   PQDSAVIKAGYCVKQ-----GAV---MKNWKRRYFQLDENTIGYFKSELE-------KEP 53

Query: 104 I-IIFKARCE-----KAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
           + +I           K  D   R ++F +  T  + F   A S   M  W+  +S
Sbjct: 54  LRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRT-FYVQADSPEEMHSWIKAVS 107

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 16/117 (13%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVL---CGQLLCFFKDQDDFVASKAATSPIIIF 107
           I G L+ +    +         +   Y +L      LL +  +  +      A   + + 
Sbjct: 17  ICGFLDIE---DNENSG----KFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQL- 68

Query: 108 KARCEKAGDYTKRKHVFRLYC----TDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
                K    T ++     +C         +   A  +  ++DWV  ++  ++  PS
Sbjct: 69  -TYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPS 124

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 28/118 (23%)

Query: 66  KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
            +  ++SW  L+ VL   +L  +K Q +           ++  A         K    F+
Sbjct: 16  IRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVG-----TVLLNACEIIERPSKKDGFCFK 70

Query: 126 LYCTDGSE-----------------------FLFLAPSETLMEDWVNKISFHAQLPPS 160
           L+                              +  A SE+    W++ +    +  PS
Sbjct: 71  LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 67  KAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL 126
               + W+     +   +L       +        + + +   + +   +    K  F L
Sbjct: 21  DGIRKVWQRRKCSVKNGILTISHATSN-----RQPAKLNLLTCQVKPNAE---DKKSFDL 72

Query: 127 YCTDGSEFLFLAPSETLMEDWVNKIS 152
             +    + F A  E     W++ ++
Sbjct: 73  I-SHNRTYHFQAEDEQDYVAWISVLT 97

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 13/114 (11%), Positives = 35/114 (30%), Gaps = 18/114 (15%)

Query: 47  PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-I 105
                 G L++        +    R ++  +    G  + ++ ++ +            I
Sbjct: 6   SGKVKSGWLDKL-----SPQG--KRMFQKRWVKFDGLSISYYNNEKE-------MYSKGI 51

Query: 106 IFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP 159
           I  +         +  + F +  T  + F+F    E    DW++ +    +   
Sbjct: 52  IPLSAISTV--RVQGDNKFEVVTTQRT-FVFRVEKEEERNDWISILLNALKSQS 102

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 23/106 (21%)

Query: 63  SGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII------FKARCEKAGD 116
           +  KK     W   Y ++  + + F+  + D    K  ++P ++      F  R     D
Sbjct: 13  NNTKK---FGWVKKYVIVSSKKILFYDSEQD----KEQSNPYMVLDIDKLFHVRPVTQTD 65

Query: 117 --YTKRKH---VFRL-----YCTDGSEFLFLAPSETLMEDWVNKIS 152
                 K    +F++       +     L LA S    + WV+++ 
Sbjct: 66  VYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 14/103 (13%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
           VE  GVL +            +  W+  + VL    L ++K +D+               
Sbjct: 1   VERCGVLSKWTNY--------IHGWQDRWVVLKNNALSYYKSEDE-----TEYGCRGSIC 47

Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
                   +   +  F +   + S +   A      + W++ I
Sbjct: 48  LSKAVITPHDFDECRFDIS-VNDSVWYLRAQDPDHRQQWIDAI 89

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 17/159 (10%)

Query: 4   DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQ-LDQLPPVEIQ---GVLERKH 59
            +      K  L++   R  S   + +  + +K+ ++++ +D     +I         + 
Sbjct: 192 KICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEG 251

Query: 60  ELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---- 115
            L   G K         +  L   L+   K          A++     K +         
Sbjct: 252 TLTRVGAK------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIN 305

Query: 116 ---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
              D  + KH F +   D +  +F A S     +W+  +
Sbjct: 306 DKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAAL 344

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 26/115 (22%)

Query: 70  VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT 129
           V++WK  + +L    L +F+   D          II  +    +     ++ + F LY  
Sbjct: 18  VKTWKRRWFILTDNCLYYFEYTTDKEPRG-----IIPLENLSIREVLDPRKPNCFELYNP 72

Query: 130 DGSE---------------------FLFLAPSETLMEDWVNKISFHAQLPPSLQL 163
                                    +   APS    E+W+  I       P   +
Sbjct: 73  SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDM 127

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 8/108 (7%)

Query: 70  VRSWKSLYTVLCGQ-LLCFFKDQDDFVASKAATSPIIIFKARCEKA------GDYTKRKH 122
           +R WK  +  L     L ++ D+              +   +  +        +   R  
Sbjct: 21  LRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDG 80

Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKI-SFHAQLPPSLQLLSYDDS 169
           +  +   +GS     A +      W   +   ++   P+   +    S
Sbjct: 81  LLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPSGPS 128

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAA---TSPI 104
              ++ +L ++ +     KK +  ++K    VL   +L +++ + +    K     +   
Sbjct: 14  NTILEEILIKRSQ---QKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIK 70

Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
            +   + +      + K+ F++   D +     APS    + WV K+    +   +
Sbjct: 71  CVEIVKNDDGVIPCQNKYPFQV-VHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 71  RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130
            +W   +    G  L      D       A    +        A D   R++ F++   D
Sbjct: 295 STWDRQFYFTQGGNLMSQARGDV------AGGLAMDIDNCSVMAVDCEDRRYCFQITSFD 348

Query: 131 GSE-FLFLAPSETLMEDWVNKI 151
           G +  +  A S+   E+W+  I
Sbjct: 349 GKKSSILQAESKKDHEEWICTI 370

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 21/117 (17%)

Query: 65  GKKAAVRSWKSLYTVLCGQ-LLCFFKDQDDF-----------------VASKAATSPIII 106
              +  + WK  Y  L     L +    +D+                 V  K     I  
Sbjct: 14  SGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISA 73

Query: 107 FKARCEKAGDY-TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQ 162
           F      +     +    F +  + G  + F A S    + WV  I   +Q+  SLQ
Sbjct: 74  FGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE--SQILASLQ 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.94
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.93
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.92
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.91
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.9
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.9
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.87
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.85
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.85
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.81
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.81
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.79
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.79
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.79
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.79
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.79
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.78
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.78
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.78
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.78
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.77
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.77
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.77
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.77
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.77
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.76
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.75
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.75
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.75
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.75
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.75
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.74
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.74
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.73
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.73
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.72
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.72
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.72
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.72
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.71
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.7
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.7
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.7
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.7
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.69
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.68
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.68
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.68
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.68
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.67
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.67
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.61
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.59
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.58
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.58
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.57
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.57
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.52
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.47
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.43
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.41
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.39
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.3
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.25
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.17
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.14
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.13
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.1
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.63
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.51
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.49
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	98.48
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.48
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	97.86
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	97.53
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	97.44
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	97.26
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.17
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.09
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	97.07
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	96.98
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	96.95
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	96.92
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	96.91
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	96.88
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	96.83
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	96.7
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	96.69
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.69
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	96.57
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	96.48
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	96.37
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	96.21
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	96.04
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	95.97
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	95.63
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	95.52
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	95.28
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.24
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	95.05
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	94.93
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	94.31
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	93.7
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	93.51
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	93.27
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	92.82
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	92.64
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	92.5
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	92.4
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	92.07
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	91.93
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	91.82
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	91.34
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	90.77
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	88.6
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	88.02
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	83.12

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=193.67  Aligned_cols=109  Identities=31%  Similarity=0.485  Sum_probs=94.4

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--------CCCccEEecccEEEecC-CC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--------AATSPIIIFKARCEKAG-DY  117 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--------a~~~~IsL~ga~v~ia~-dy  117 (344)
                      +.|.|+|||.||++++. |||...++|+++||||+|+.|+||||+.+.....        .+...|+|.+|.|+++. ++
T Consensus         6 ~~v~keG~L~rK~~~~~-gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~   84 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADK-GKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDK   84 (124)
T ss_dssp             ---CEEEEEEEEEEEET-TEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGG
T ss_pred             CcEEEEEEEEEEEeccC-CccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEeccccc
Confidence            46999999999998876 9998889999999999999999999988653211        24678999999999986 89


Q ss_pred             CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .+|+|||+|++++|.+|+|||+|++||++||.+|+.|+.
T Consensus        85 ~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           85 SSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998864

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.93  E-value=9.5e-26  Score=185.48  Aligned_cols=112  Identities=32%  Similarity=0.496  Sum_probs=99.4

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc--c--CCCccEEecccEEEecCCCCCCc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS--K--AATSPIIIFKARCEKAGDYTKRK  121 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~--~--a~~~~IsL~ga~v~ia~dy~KRK  121 (344)
                      ..+|.++|||.+|+.++.+|++...++|+++||||+++.|+||+|+.+....  .  .+...|+|.+|.|..+.++.+|+
T Consensus         5 ~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~kr~   84 (122)
T 1dro_A            5 GAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKK   84 (122)
T ss_dssp             CSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSST
T ss_pred             CCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCCCCCC
Confidence            3578999999999998888999889999999999999999999999876541  1  22467999999999888999999


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      |||+|++.++.+|+|||+|++||++||.+|+.++..
T Consensus        85 ~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           85 HVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             TEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988753

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=1.2e-24  Score=178.10  Aligned_cols=111  Identities=38%  Similarity=0.583  Sum_probs=98.5

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--CCCccEEecccEEEecCCCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--AATSPIIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--a~~~~IsL~ga~v~ia~dy~KRKnV  123 (344)
                      ..+|.++|||.+|...+.+|++...+.|+++||||+++.|+||+++.+...+.  .+...|+|.+|.+.++.++.+++|+
T Consensus         5 ~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~   84 (123)
T 1wjm_A            5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHV   84 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSE
T ss_pred             CCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCE
Confidence            45799999999998888888888899999999999999999999988754321  2345799999999998888999999


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|.++++++|+|+|+|++||++||.+|+.++.
T Consensus        85 F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~  117 (123)
T 1wjm_A           85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998874

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.91  E-value=8.7e-24  Score=177.05  Aligned_cols=108  Identities=22%  Similarity=0.415  Sum_probs=89.8

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhc-------ccCCCccEEecccEEEecCCCCC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA-------SKAATSPIIIFKARCEKAGDYTK  119 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~-------~~a~~~~IsL~ga~v~ia~dy~K  119 (344)
                      ..+.++|||.+|+. ..+|++. .++|+++||||+|+.|+||||+.....       ...+.+.|+|.+|.+..+.++.+
T Consensus        10 ~~~~k~G~L~kk~~-~~~G~~~-~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~k   87 (129)
T 2p0d_A           10 HEVEKSGLLNMTKI-AQGGRKL-RKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSS   87 (129)
T ss_dssp             CSEEEEEEEEEEEE-EETTEEC-CCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCS
T ss_pred             cceeEEEEEEEeee-ccCCCcC-CCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCC
Confidence            47999999997654 4466655 499999999999999999999964321       12457899999999998888889


Q ss_pred             CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       120 RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++|||+|.++++.+|+|||+|++||++||.+|+.++.
T Consensus        88 r~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~  124 (129)
T 2p0d_A           88 RRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE  124 (129)
T ss_dssp             SSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998763

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.90  E-value=3.5e-23  Score=163.32  Aligned_cols=104  Identities=39%  Similarity=0.704  Sum_probs=91.7

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--CCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--AATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ++|||.+|..++.+|++...++|+++||||+++.|+||+++.+.....  .+...|+|.+|.|.++.++.+++|+|+|.+
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~   80 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEe
Confidence            489999999888888888899999999999999999999987643211  245679999999988888889999999999


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      +++.+|+|+|+|++||++||.+|+.|
T Consensus        81 ~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           81 SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            99999999999999999999999864

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.90  E-value=2.7e-23  Score=169.89  Aligned_cols=99  Identities=22%  Similarity=0.429  Sum_probs=85.1

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE--ecCCCCCCcceEEEE
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE--KAGDYTKRKHVFRLY  127 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~--ia~dy~KRKnVFrL~  127 (344)
                      .++|||.+|.    +|++...++|+++||||+++.|+||||+.+..    +.+.|+|.++.|.  ...++.+|+|||+|.
T Consensus         1 tkeG~L~kK~----g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~----p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~   72 (112)
T 3cxb_B            1 TKEGMLHYKA----GTSYLGKEHWKTCFVVLSNGILYQYPDRTDVI----PLLSVNMGGEQCGGCRRANTTDRPHAFQVI   72 (112)
T ss_dssp             CEEEEEEECC----SCCCSSCCCCEEEEEEEETTEEEEESSSSCCS----CSEEEETTC-CEEEEEECCCSSCTTEEEEE
T ss_pred             CceEEEEEeC----CCCCCCCCCceEEEEEEECCEEEEECCCCCCC----ccceEEecCCEEEeeeccCCCCCCeEEEEE
Confidence            3799999773    45666789999999999999999999987543    4678999987776  556788999999999


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +.++.+|+|+|+|++||++||++|+.++.
T Consensus        73 ~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~  101 (112)
T 3cxb_B           73 LSDRPCLELSAESEAEMAEWMQHLCQAVS  101 (112)
T ss_dssp             ETTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998875

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.87  E-value=1.2e-21  Score=167.09  Aligned_cols=105  Identities=21%  Similarity=0.343  Sum_probs=89.2

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhc-----ccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA-----SKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~-----~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      .++|+|+||..+. +|+|...++|+++||||+|+.||||+.......     ...+.+.|+|.|++|. ..++.+++|||
T Consensus         2 ~~~G~L~rk~llK-~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~-~~e~~~~~~~F   79 (126)
T 2dtc_A            2 TMEGPLRRKTLLK-EGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQ-LPDDPEHPDIF   79 (126)
T ss_dssp             CEEEEEEEEEEEB-TTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEE-CCCCTTSTTEE
T ss_pred             ceeeeeeeeehhh-cCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEE-ecCCCCCCCEE
Confidence            5899999987765 677777899999999999999999996531110     1145778999999997 66778899999


Q ss_pred             EEEeC-CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCT-DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tp-dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +|.++ .|.+|+|+|+++++|++||++|..|+.
T Consensus        80 ~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~  112 (126)
T 2dtc_A           80 QLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK  112 (126)
T ss_dssp             EEECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            99998 899999999999999999999999985

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.85  E-value=6.2e-22  Score=188.50  Aligned_cols=111  Identities=24%  Similarity=0.368  Sum_probs=91.9

Q ss_pred             CCCeEEEEEEeeeeeeccC-Cccc---cccCCceEEEEEeCCeEeEEecCchhhcc--cCCCccEEecccEEEecCCCCC
Q psy10626         46 LPPVEIQGVLERKHELQSG-GKKA---AVRSWKSLYTVLCGQLLCFFKDQDDFVAS--KAATSPIIIFKARCEKAGDYTK  119 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesg-GKKs---~~RsWKkrwfVLrG~~L~fYKDeke~a~~--~a~~~~IsL~ga~v~ia~dy~K  119 (344)
                      .+.|.|+|||.+|+.++.+ ++|.   ..++|+++||||+|+.|+||+|+......  ..+.+.|+|.||+|.++.+|.+
T Consensus         8 ~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~k   87 (279)
T 3a8n_A            8 QGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPK   87 (279)
T ss_dssp             --CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSS
T ss_pred             CCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCC
Confidence            4679999999999988654 3222   47999999999999999999998754321  1456789999999998889999


Q ss_pred             CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       120 RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|||+|++++|.+|+|||+|++||++||.+|+.+++
T Consensus        88 Kk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~  124 (279)
T 3a8n_A           88 KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA  124 (279)
T ss_dssp             SCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998875

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.85  E-value=6.4e-21  Score=163.99  Aligned_cols=109  Identities=29%  Similarity=0.471  Sum_probs=80.6

Q ss_pred             CeEEEEEEeeeeeeccCCccc--cccCCceEEEEEeCCeEeEEecCchhhcccCCCcc--EEecccEEEecCCCCCCcce
Q psy10626         48 PVEIQGVLERKHELQSGGKKA--AVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP--IIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs--~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~--IsL~ga~v~ia~dy~KRKnV  123 (344)
                      .|.++|||.+|+.++.+|+|.  ..+.|+++||||+++.|+||+++.+...  ...+.  |.+.+|.+++..++.+++|+
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~--~~~g~i~l~~~~~~~~~~~~~~~~~~~   79 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTT--PSEEEQPISVNACLIDISYSETKRKNV   79 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC----------CEECSSCEEEECSSSCSCSSE
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCccccc--ccCCceEecccceEEEeccccCCCCCE
Confidence            588999999998888888764  4789999999999999999999865211  12344  44455888887777889999


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      |+|.+++ .+|+|+|++++||++||.+|+.++....
T Consensus        80 F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~~~~~  114 (168)
T 2j59_M           80 FRLTTSD-CECLFQAEDRDDMLAWIKTIQESSNLNE  114 (168)
T ss_dssp             EEEECSS-CEEEEECSSHHHHHHHHHHHHHHCCCCH
T ss_pred             EEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence            9999988 7999999999999999999999887554

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.81  E-value=2.1e-19  Score=143.45  Aligned_cols=99  Identities=17%  Similarity=0.301  Sum_probs=84.2

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      ..+.++|||.++.        ...+.|++|||||+++.|+||+++.+..    +.+.|+|.++.+....+..+++|+|+|
T Consensus         6 ~~~~~~G~L~K~~--------~~~~~Wk~RwfvL~~~~L~yyk~~~~~~----~~~~i~L~~~~~~~~~~~~~~~~~F~i   73 (109)
T 1wgq_A            6 SGSTMSGYLYRSK--------GSKKPWKHLWFVIKNKVLYTYAASEDVA----ALESQPLLGFTVTLVKDENSESKVFQL   73 (109)
T ss_dssp             CSCSCEEEEEEES--------STTSCCEEEEEEEETTEEEEESCTTCSS----CSEEEECSSEEEEECCCSSCSSSEEEE
T ss_pred             CCCeEEEEEEeCC--------CCCCCceeEEEEEeCCEEEEECCCCcCc----cCceEECCCCEEEECCCCCCCCcEEEE
Confidence            4688999999652        2368999999999999999999887543    478899999887766665677899999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      .++++..|+|+|+|++||+.||.+|+.|+--
T Consensus        74 ~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~~  104 (109)
T 1wgq_A           74 LHKGMVFYVFKADDAHSTQRWIDAFQEGTVS  104 (109)
T ss_dssp             EETTEEEEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred             EeCCCeEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            9998889999999999999999999988753

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.81  E-value=1e-19  Score=170.62  Aligned_cols=111  Identities=27%  Similarity=0.351  Sum_probs=88.7

Q ss_pred             CCCeEEEEEEeeeeee--ccCCccc--cccCCceEEEEEeCCeEeEEecCchhh--cccCCCccEEecccEEEecCCCCC
Q psy10626         46 LPPVEIQGVLERKHEL--QSGGKKA--AVRSWKSLYTVLCGQLLCFFKDQDDFV--ASKAATSPIIIFKARCEKAGDYTK  119 (344)
Q Consensus        46 l~~V~KeGwL~RKq~l--esgGKKs--~~RsWKkrwfVLrG~~L~fYKDeke~a--~~~a~~~~IsL~ga~v~ia~dy~K  119 (344)
                      .+.|.|+|||.+|+..  ..+|+..  ..++|+++||||+++.|+||||+....  ....+.+.|+|.+|.+..+.++.+
T Consensus         8 ~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~k   87 (263)
T 3a8p_A            8 QGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPK   87 (263)
T ss_dssp             --CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSS
T ss_pred             CCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcCCC
Confidence            3579999999987754  2344331  278999999999999999999964221  112356789999998887777778


Q ss_pred             CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       120 RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++|+|+|.++++.+|+|+|+|++||++||.+|+.++.
T Consensus        88 k~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~  124 (263)
T 3a8p_A           88 KEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACA  124 (263)
T ss_dssp             CSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            8999999999899999999999999999999998764

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.79  E-value=5.5e-19  Score=143.82  Aligned_cols=102  Identities=20%  Similarity=0.314  Sum_probs=84.3

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnV  123 (344)
                      ...+.++|||.++..       ...+.|+++||||+++.|+||+++.+..    +.+.|+|.++.+....  +..+++|+
T Consensus        18 ~~~~~~~G~L~K~~~-------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~~   86 (128)
T 2dkp_A           18 NAPVVRRGWLYKQDS-------TGMKLWKKRWFVLSDLCLFYYRDEKEEG----ILGSILLPSFQIALLTSEDHINRKYA   86 (128)
T ss_dssp             TSCCCEEEEEEEECC-------SSSCCEEEEEEEEETTEEEEESSTTCCS----EEEEECGGGSEEEECCGGGCCSSCSE
T ss_pred             CCCcEEEEEEEEeCC-------CCCCCceeEEEEEeCCEEEEECCCCCcc----cceEEEcCceEEEEcCCcccCCCCeE
Confidence            457899999985531       1368899999999999999999887543    3678899888877543  33578899


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      |+|.+++++.|+|+|++++||++||.+|+.|+.+.
T Consensus        87 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~  121 (128)
T 2dkp_A           87 FKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQ  121 (128)
T ss_dssp             EEEECSSSCCEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            99999988999999999999999999999887643

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=7.2e-19  Score=142.05  Aligned_cols=101  Identities=24%  Similarity=0.415  Sum_probs=83.9

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec-C-CCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA-G-DYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia-~-dy~KRKnV  123 (344)
                      ...+.++|||.++..       ...+.|+++||||+++.|+||+++.+..    +.+.|+|.++.+... . +..+++|+
T Consensus        19 ~~~~~~~G~L~K~~~-------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~~   87 (122)
T 2yry_A           19 NAPVTKAGWLFKQAS-------SGVKQWNKRWFVLVDRCLFYYKDEKEES----ILGSIPLLSFRVAAVQPSDNISRKHT   87 (122)
T ss_dssp             TCCEEEEEEEEEECC-------SSSCCEEEEEEEEETTEEEEESSTTCCS----CCEEEESTTCCCEECCTTCSCSSSSE
T ss_pred             CCCccEEEEEEEECC-------CCCCCcEEEEEEEeCCEEEEECCCCCCC----cccEEEcCCCEEEEcCccccCCcccE
Confidence            457999999986531       1368999999999999999999887543    478899998876543 2 44678999


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      |+|.+.+++.|+|+|++++||++||.+|+.|+.+
T Consensus        88 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~  121 (122)
T 2yry_A           88 FKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV  121 (122)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHHHCC
T ss_pred             EEEecCCCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            9999888899999999999999999999998875

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.79  E-value=6.3e-19  Score=149.09  Aligned_cols=100  Identities=18%  Similarity=0.286  Sum_probs=81.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      .+.|.++|||.++.         ..+.|++|||||+++.|+|||++.+..    +.+.|.|.+|.+.. .+..+++|+|+
T Consensus         5 ~~~v~k~GwL~K~g---------~~k~WkrRWfVLk~~~L~yyk~~~~~~----p~G~I~L~~~~v~~-~~~~~~~~~F~   70 (130)
T 1v88_A            5 SSGIVMADWLKIRG---------TLKSWTKLWCVLKPGVLLIYKTQKNGQ----WVGTVLLNACEIIE-RPSKKDGFCFK   70 (130)
T ss_dssp             SSSCCEEEEEEECC---------SSSSCEEEEEEEETTEEEEESCSSSCC----CCEEEECSSCEECC-CCTTTSSCEEE
T ss_pred             CCceEEEeEEEEeC---------CCCCceEEEEEEECCEEEEECCCCCCC----ceEEEEcCCCEEEE-CCCCCCCeEEE
Confidence            45789999998532         468999999999999999999998643    47899999988643 23356679999


Q ss_pred             EEeCCC-----------------------cEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        126 LYCTDG-----------------------SEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       126 L~tpdg-----------------------~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      |.+++.                       ..|+|+|+|++||++||.||+.|+...+
T Consensus        71 i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~  127 (130)
T 1v88_A           71 LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP  127 (130)
T ss_dssp             EECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred             EEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence            998753                       2499999999999999999999886543

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.79  E-value=5.1e-19  Score=151.18  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEe----cCchhhcccCCCccEEecccEEEec---CCCCCC
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFK----DQDDFVASKAATSPIIIFKARCEKA---GDYTKR  120 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYK----Deke~a~~~a~~~~IsL~ga~v~ia---~dy~KR  120 (344)
                      .+.++|||.++.       ...+++|++|||||++..||||+    ++.+..    +.+.|.|.+++|+.+   .+...+
T Consensus         7 n~~~~G~L~KqG-------~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~----p~G~I~L~g~tV~~~~~~~~~~~~   75 (126)
T 1wi1_A            7 GMKHSGYLWAIG-------KNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAE----PQELLQLDGYTVDYTDPQPGLEGG   75 (126)
T ss_dssp             CEEEEEEEEEEC-------SSSCCSCEEEEEEEEEEETTEEEEEECCSSSSC----CSEEEECSSCEEEECCCCSSCCSC
T ss_pred             CCceeEEEEEeC-------CCcccccceEEEEEeCCEEEEEEcccccccCCC----CceEEECCCcEEEEecCCcccccC
Confidence            468999998432       12468999999999999999999    877543    478999999998843   344678


Q ss_pred             cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +|+|+|.++ +..|+|+|+|++||++||+||..|+...
T Consensus        76 k~~F~~v~~-~~ty~~~Adseee~~~WikAi~~A~~~~  112 (126)
T 1wi1_A           76 RAFFNAVKE-GDTVIFASDDEQDRILWVQAMYRATGQS  112 (126)
T ss_dssp             SSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred             ceEEEEecC-CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence            999999976 4689999999999999999999998644

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.79  E-value=8.9e-19  Score=140.35  Aligned_cols=97  Identities=23%  Similarity=0.367  Sum_probs=82.4

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEe-cCCCCCCcceEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEK-AGDYTKRKHVFRL  126 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~i-a~dy~KRKnVFrL  126 (344)
                      .+.++|||.++.        ...+.|++|||||+++.|+||+++.+..    +.+.|+|.++.+.. ..+..+++|+|+|
T Consensus         4 ~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~~~~~~~~~~~~~~~F~i   71 (113)
T 1pls_A            4 KRIREGYLVKKG--------SVFNTWKPMWVVLLEDGIEFYKKKSDNS----PKGMIPLKGSTLTSPCQDFGKRMFVFKI   71 (113)
T ss_dssp             CCSEEEEEEEES--------SSSSCCEEEEEEEETTEEEEESSTTCSS----CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred             CCcEEEEEEEeC--------CCCCCceEEEEEEECCEEEEEeCCCCCC----cceEEEcCCCEEEEecCCCCCCccEEEE
Confidence            588999998553        1468999999999999999999886432    47889999887654 4456788999999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .+.+++.|+|+|+|++||++||.+|+.++.
T Consensus        72 ~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~  101 (113)
T 1pls_A           72 TTTKQQDHFFQAAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             EETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998864

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.78  E-value=1.1e-18  Score=151.47  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=81.9

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC-CCCCCcceE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG-DYTKRKHVF  124 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~-dy~KRKnVF  124 (344)
                      ..++.++|||.++.        ...++|++|||||+++.|+||+++.+..    ..+.|+|.++.+.... ...++.|+|
T Consensus        15 ~~pv~keG~L~Kkg--------~~~k~WkrRWFvLk~~~L~Yyk~~~d~~----~~g~I~L~~~~~~~~~~~~~~~~~~F   82 (149)
T 1x1f_A           15 ALPLYFEGFLLIKR--------SGYREYEHYWTELRGTTLFFYTDKKSII----YVDKLDIVDLTCLTEQNSTEKNCAKF   82 (149)
T ss_dssp             SSCEEEEEEEEEEC--------TTCCSCEEEEEEEETTEEEEESCSSCSS----CSEECCCSSCCEEEECCCTTSCCCEE
T ss_pred             CCCccEEEEEEEeC--------CCCCCceeEEEEEcCCEEEEEeCCCccc----cCcEEECCCceEEeeccCCCCcCcEE
Confidence            45699999998653        2469999999999999999999997643    3578888877654222 224467999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCCC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS  160 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~s  160 (344)
                      +|.+++ ++|+|+|+|++||++||.+|+.++.+...
T Consensus        83 ~I~t~~-r~~~f~A~s~ee~~eWi~aI~~v~~~~~p  117 (149)
T 1x1f_A           83 TLVLPK-EEVQLKTENTESGEEWRGFILTVTELSVP  117 (149)
T ss_dssp             EEECSS-CCEEEECSSHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEcCC-CEEEEEcCCHHHHHHHHHHHHHHHcccCC
Confidence            999986 78999999999999999999998876543

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.78  E-value=1.4e-18  Score=136.27  Aligned_cols=101  Identities=24%  Similarity=0.366  Sum_probs=82.6

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC---CCCCCcce
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRKHV  123 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRKnV  123 (344)
                      +.|.++|||.++...    .....+.|+++||||+++.|+||+++.+..    +.+.|+|.++.+....   ...+++|+
T Consensus         1 g~v~~~G~L~K~~~~----~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~~~   72 (108)
T 1u5d_A            1 GSVIKQGYLEKKSKD----HSFFGSEWQKRWCVVSRGLFYYYANEKSKQ----PKGTFLIKGYSVRMAPHLRRDSKKESC   72 (108)
T ss_dssp             CCEEEEEEEEEEEEC----SSSSCEEEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEECGGGCSSGGGGGE
T ss_pred             CCccEEEEEEEcCCC----CCccccCceeeEEEEeCCEEEEecCCCCCC----CCEEEEecceEEEeCCccccccCCcce
Confidence            368999999966421    011238999999999999999999887533    4788999999877652   34567899


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.|.+++++.|+|+|+|++||++||.+|+.++
T Consensus        73 F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i  104 (108)
T 1u5d_A           73 FELTSQDRRTYEFTATSPAEARDWVDQISFLL  104 (108)
T ss_dssp             EEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            99999988999999999999999999999876

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.78  E-value=1.4e-18  Score=148.32  Aligned_cols=101  Identities=16%  Similarity=0.283  Sum_probs=82.7

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccC-CceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEe-cCCCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRS-WKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEK-AGDYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~Rs-WKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~i-a~dy~KRKnVF  124 (344)
                      .+|+++|||.+++       .+.++. |++|||||++.+|+||||+.+..+    .+.|.|.+..+.. ..+...|+|+|
T Consensus        10 ~~VirkGWL~k~~-------~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~----~G~IpL~~~~vr~v~~~~~~rk~~F   78 (125)
T 1dyn_A           10 ILVIRKGWLTINN-------IGIMKGGSKEYWFVLTAENLSWYKDDEEKEK----KYMLSVDNLKLRDVEKGFMSSKHIF   78 (125)
T ss_dssp             CCEEEEEEEEESC-------CCGGGTSSEEEEEEEESSEEEEESSTTCSCE----EEEEECTTEEEEECCSCSSSSCEEE
T ss_pred             cceEEEEEEEEec-------CccccCCceeeEEEEeccceeeecCCccccc----ceEEECCCceEeccCCCCCCCceEE
Confidence            4699999998543       235775 999999999999999999987654    6889999877654 33445799999


Q ss_pred             EEEeCCCc-------EEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        125 RLYCTDGS-------EFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       125 rL~tpdg~-------eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .|..++++       .|.|+|+|++||++||++|.+|+-.+
T Consensus        79 ~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~v~p  119 (125)
T 1dyn_A           79 ALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYP  119 (125)
T ss_dssp             EEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred             EEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhCccCc
Confidence            99998765       99999999999999999998775443

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.78  E-value=7.9e-19  Score=145.72  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=80.1

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-----cCCCccEEecccEEEecCC-CCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-----KAATSPIIIFKARCEKAGD-YTK  119 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-----~a~~~~IsL~ga~v~ia~d-y~K  119 (344)
                      +..+.++|||.++.        ...++|++|||||+++.|+||++.......     ....+.|+|.+|.+....+ ..+
T Consensus         9 ~~~~~k~G~L~K~g--------~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~   80 (124)
T 2w2x_D            9 KDEHKQQGELYMWD--------SIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQ   80 (124)
T ss_dssp             ----CCEEEEEEEE--------TTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTT
T ss_pred             hhhcceeEEEEEEC--------CCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCC
Confidence            55788999998654        246889999999999999999986542111     1236789999999886653 467


Q ss_pred             CcceEEEEeCCC--cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        120 RKHVFRLYCTDG--SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       120 RKnVFrL~tpdg--~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++|+|+|.+++.  ..|+|+|++++||++||++|+.++.
T Consensus        81 k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~  119 (124)
T 2w2x_D           81 KSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITW  119 (124)
T ss_dssp             BSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence            899999998764  6799999999999999999998874

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.77  E-value=3e-18  Score=138.55  Aligned_cols=103  Identities=18%  Similarity=0.362  Sum_probs=84.5

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC--CCCCcc
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD--YTKRKH  122 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d--y~KRKn  122 (344)
                      +..++.++|||.++..       ...+.|+++||||+++.|+||+++.+..    +.+.|.|.++.+.....  ..+++|
T Consensus         7 p~~~~~~~G~L~K~~~-------~~~~~WkkR~fvL~~~~L~yy~~~~~~~----~~g~i~l~~~~v~~~~~~~~~~~~~   75 (123)
T 1upq_A            7 PNLPVHIRGWLHKQDS-------SGLRLWKRRWFVLSGHCLFYYKDSREES----VLGSVLLPSYNIRPDGPGAPRGRRF   75 (123)
T ss_dssp             TTSCEEEEEEEEEECS-------SSSCCEEEEEEEEETTEEEEESSTTCCS----CCEEEEGGGCEEEECCSSCTTSSSS
T ss_pred             CCCCceEEEEEEeeCC-------CCCCCceeEEEEEeCCEEEEECCCCCcc----cceEEECCCCEEEECCCCccCCCcE
Confidence            3457999999986531       1358899999999999999999887643    47889999988776542  356899


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +|.|.++++..|+|+|++++||++||.+|+.++...
T Consensus        76 ~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~  111 (123)
T 1upq_A           76 TFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAE  111 (123)
T ss_dssp             EEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred             EEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            999999988999999999999999999999888643

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=4.1e-18  Score=136.32  Aligned_cols=102  Identities=24%  Similarity=0.412  Sum_probs=84.3

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnV  123 (344)
                      ...+.++|||.++.       ....+.|+++||||+++.|+||+++.+..    +.+.|+|.++.+....  +..+++|+
T Consensus         8 ~~~~~~~G~L~K~~-------~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~~   76 (117)
T 2d9y_A            8 NAPVTKAGWLFKQA-------SSGVKQWNKRWFVLVDRCLFYYKDEKEES----ILGSIPLLSFRVAAVQPSDNISRKHT   76 (117)
T ss_dssp             SCCCCEEEEEEEEC-------TTSSSCEEEEEEEEETTEEEEESSTTCCS----CCEEEECSSCEEEECCTTTTCCCSSE
T ss_pred             CCCeeEEEEEEEeC-------CCCCCCceEEEEEECCCEEEEECCCCCCC----cCCEEEeCCeEEEEcCccccCCCccE
Confidence            34799999998653       11368999999999999999999886543    4788999998776442  44678999


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      |+|.+.+++.|+|+|++++||++||.+|+.++...
T Consensus        77 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~  111 (117)
T 2d9y_A           77 FKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ  111 (117)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHTTCCT
T ss_pred             EEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence            99998888999999999999999999999887644

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.77  E-value=2.6e-18  Score=143.97  Aligned_cols=103  Identities=19%  Similarity=0.287  Sum_probs=82.3

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCC-----
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTK-----  119 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~K-----  119 (344)
                      ++. +.++|||.+|..        ..++|+++||||+++.|++||++..... ..+.+.|.|.+|++....+...     
T Consensus         3 p~~-~~k~G~L~Kk~~--------~~k~W~~rwfVL~~~~L~yyK~~~~~~d-~~P~gsI~L~~c~v~~~~~~~~~~~~~   72 (120)
T 4a6h_A            3 PFT-EIKSGFLERRSK--------FLKSYSKGYYVLTPNFLHEFKTADRKKD-LVPVMSLALSECTVTEHSRKNSTSSPN   72 (120)
T ss_dssp             CCC-CSEEEEEEEEET--------TTTEEEEEEEEECSSEEEEESSCCTTTC-CSCSEEEEGGGEEEEEECCCCC-----
T ss_pred             CCc-ccEEEEEEEcCC--------CCCCCccEEEEEeCCEEEEEcCCCcCcC-CCceEEEECCCCEEEEccccccccccc
Confidence            355 899999997652        4789999999999999999998764321 2357899999999886543322     


Q ss_pred             ---CcceEEEEeCC------CcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        120 ---RKHVFRLYCTD------GSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       120 ---RKnVFrL~tpd------g~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                         +.+.|.|...+      +..|+|+|+|.+||++||++|+.++.+
T Consensus        73 ~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~~  119 (120)
T 4a6h_A           73 STGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTST  119 (120)
T ss_dssp             ----CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred             ccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHhcc
Confidence               78899999876      359999999999999999999998865

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.77  E-value=3.9e-18  Score=134.90  Aligned_cols=97  Identities=13%  Similarity=0.271  Sum_probs=78.8

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC--eEeEEecCchhhcccCCCccEEecccEEEecCC-----CCC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPIIIFKARCEKAGD-----YTK  119 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~--~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d-----y~K  119 (344)
                      ..+.++|||.++.        ...++|+++||||+++  .|+||+++.+..    +.+.|+|.+|.+....+     ..+
T Consensus         5 ~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~   72 (109)
T 2i5f_A            5 GVIIKQGCLLKQG--------HRRKNWKVRKFILREDPAYLHYYDPAGAED----PLGAIHLRGCVVTSVESNSNGRKSE   72 (109)
T ss_dssp             CCEEEEEEEEEEC--------TTTCCEEEEEEEEETTTTEEEEECTTSCSS----CSEEEECTTCEEEEECC--------
T ss_pred             CceeEEEEEEEcC--------CCCCCceEEEEEEeCCCcEEEEECCCCCCC----ccEEEECCCCEEEEccCCcccccCC
Confidence            4799999998653        1367899999999986  999999886532    47889999987653322     123


Q ss_pred             CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       120 RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ++++|+|.++++..|+|+|+|++||++||.+|+.++
T Consensus        73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            789999999998899999999999999999999876

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.77  E-value=4.5e-18  Score=135.67  Aligned_cols=101  Identities=22%  Similarity=0.355  Sum_probs=82.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnV  123 (344)
                      ...+.++|||.++.        ...+.|++|||||+++.|+||+++.+..    +.+.|+|.++.+....  +...++|+
T Consensus         5 ~~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~~   72 (118)
T 1v89_A            5 SSGPIKMGWLKKQR--------SIVKNWQQRYFVLRAQQLYYYKDEEDTK----PQGCMYLPGCTIKEIATNPEEAGKFV   72 (118)
T ss_dssp             SSCEEEEEEEEEEC--------SSSSCEEEEEEEEETTEEEEESSSSCCS----CSEEECSTTEEEEEECCCSSCCCCCE
T ss_pred             CCCCcEEEEEEecC--------CCCCCccEEEEEEECCEEEEEeCCCCCC----ceEEEECCCCEEEEcCcCcccCCcce
Confidence            45799999998653        1367899999999999999999887633    4788999988876332  24567899


Q ss_pred             EEEEeC-------CCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        124 FRLYCT-------DGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       124 FrL~tp-------dg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      |+|.++       +.+.|+|+|++++||++||.+|+.++...
T Consensus        73 f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~  114 (118)
T 1v89_A           73 FEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG  114 (118)
T ss_dssp             EEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred             EEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence            999994       67899999999999999999999888644

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.76  E-value=1.8e-18  Score=143.54  Aligned_cols=95  Identities=16%  Similarity=0.256  Sum_probs=79.0

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC---eEeEEecCchhhcccCCCccEEecccEEEec--CCCCCCcc
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ---LLCFFKDQDDFVASKAATSPIIIFKARCEKA--GDYTKRKH  122 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~---~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia--~dy~KRKn  122 (344)
                      .+.+.|||.++.         ..+.|+++||||+++   .||||+++++..    +.+.|.|.||.|...  .+..+++|
T Consensus         7 ~~~~~G~L~k~~---------~~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~----p~g~I~L~g~~V~~~~~~~~~~~~~   73 (112)
T 2coc_A            7 GSLLCGPLRLSE---------SGETWSEVWAAIPMSDPQVLHLQGGSQDGR----LPRTIPLPSCKLSVPDPEERLDSGH   73 (112)
T ss_dssp             SSSSEEEEEEES---------SSSCEEEEEEECCTTCTTCEEEECCTTCSS----SCSEECGGGCEEECCCSSSCCSSSE
T ss_pred             CceEEEEEEecC---------CCCCceEEEEEEECCCccEEEEECCCCccC----cceEEEcCCCEEEecCcccccCCCC
Confidence            566779998642         268999999999985   799999988643    478999999998852  23456899


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +|+|.+. ++.|+|+|+|+++|++||++|+.|+.
T Consensus        74 ~Fki~~~-~~~y~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           74 VWKLQWA-KQSWYLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             EEEEEET-TEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred             EEEEecC-CeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            9999955 58999999999999999999999875

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=1e-17  Score=139.30  Aligned_cols=101  Identities=17%  Similarity=0.275  Sum_probs=76.5

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEE-eCCeEeEEecCchhhcccCCCccEEecccE--------E-Eec-
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVL-CGQLLCFFKDQDDFVASKAATSPIIIFKAR--------C-EKA-  114 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVL-rG~~L~fYKDeke~a~~~a~~~~IsL~ga~--------v-~ia-  114 (344)
                      .+.|.++|||.++.        ...+.|++||||| +++.|+||+++.+...    .+.|.|....        | .+. 
T Consensus         5 ~~~v~~~G~L~K~g--------~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~----~g~i~l~~~~~~i~~~~~~~~v~~   72 (130)
T 2d9v_A            5 SSGLVRGGWLWRQS--------SILRRWKRNWFALWLDGTLGYYHDETAQDE----EDRVVIHFNVRDIKVGQECQDVQP   72 (130)
T ss_dssp             CCCEEEEEEEEEEC--------SSSCCEEEEEEEEETTTEEEEESSSSTTSE----EEEEECTTTEEEEEEGGGCSSCCC
T ss_pred             CCceeEEEEEEeec--------CccCCceeeEEEEccCCEEEEEeCCCCCCc----CceEecccceeEEeccccccccCC
Confidence            35799999998552        1468999999999 8999999999875432    3344443211        1 111 


Q ss_pred             CCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        115 GDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       115 ~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .+..+++|+|+|.+.++++|+|+|+|++||++||.+|+.++..+
T Consensus        73 ~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~~  116 (130)
T 2d9v_A           73 PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP  116 (130)
T ss_dssp             CSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence            23456789999999888999999999999999999999887643

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.75  E-value=1e-17  Score=141.26  Aligned_cols=104  Identities=20%  Similarity=0.307  Sum_probs=84.5

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC---CCCCcc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD---YTKRKH  122 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d---y~KRKn  122 (344)
                      +..+.++|||.++...    .....+.|++|||||+++.|+||+++.+..    +.+.|.|.++.+....+   ..+++|
T Consensus        14 ~~~~~~~G~L~K~g~~----~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~~~   85 (148)
T 1u5f_A           14 LPFVIKAGYLEKRRKD----HSFLGFEWQKRWCALSKTVFYYYGSDKDKQ----QKGEFAIDGYDVRMNNTLRKDGKKDC   85 (148)
T ss_dssp             CSSEEEEEEEEEECCC----SSCSSCSEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEECTTSCSSTTGGG
T ss_pred             CCCccEEEEEEEeCCC----CCCcCCCceeEEEEEECCEEEEEcCCCCcc----cceEEEcCCcEEEECCCcccCCCCcc
Confidence            4579999999865411    111358999999999999999999887532    47889999988775542   456789


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      +|.|.+++++.|+|+|++++||++||.+|+.++..
T Consensus        86 ~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  120 (148)
T 1u5f_A           86 CFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD  120 (148)
T ss_dssp             EEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999998899999999999999999999988753

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.75  E-value=1.7e-18  Score=138.52  Aligned_cols=98  Identities=16%  Similarity=0.224  Sum_probs=79.3

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      ..+.++|||.++          ..+.|++|||||+++.|+||+++.+..   .+...|.|.+|.+....+ .+++|+|+|
T Consensus         6 ~~~~~~G~L~K~----------~~k~Wk~RwfvL~~~~L~yyk~~~~~~---~~~~~i~l~~~~v~~~~~-~~~~~~F~i   71 (107)
T 2cof_A            6 SGLETSSYLNVL----------VNSQWKSRWCSVRDNHLHFYQDRNRSK---VAQQPLSLVGCEVVPDPS-PDHLYSFRI   71 (107)
T ss_dssp             CCCTTCCEEEEE----------ETTEEEEEEEEECSSCEEEECSSTTCS---EEEEEECTTTCEEECCCB-TTBSCEEEE
T ss_pred             CCCcEeEEEEEe----------cCCCcceEEEEEECCEEEEEeCCcccC---CCeeEEeccceEEEECCC-CCCCeEEEE
Confidence            468899999854          368999999999999999999886521   124456667776665443 678899999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .+++.+.|+|+|+|++||++||.+|+.++...
T Consensus        72 ~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~~~  103 (107)
T 2cof_A           72 LHKGEELAKLEAKSSEEMGHWLGLLLSESGSG  103 (107)
T ss_dssp             EETTEEEEEEECSSHHHHHHHHHHHHHHSSCS
T ss_pred             EeCCCeEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence            99878899999999999999999999887643

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.75  E-value=1e-17  Score=135.50  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=80.7

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      +..+.++|||.++.        ...+.|++|||||+++.|+||+++.+..    +.+.|+|.++.+.... ..+++++|+
T Consensus         2 ~~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~-~~~~~~~f~   68 (127)
T 1fgy_A            2 FFNPDREGWLLKLG--------GRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENLSIREVL-DPRKPNCFE   68 (127)
T ss_dssp             CSSCSEEEEEEEEC--------SSSCCEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEEEC-CSSCSSEEE
T ss_pred             CCCCceEeEEEEEC--------CCCCCeEEEEEEEECCEEEEeCCCCCCC----cceEEECCceEEEEcc-CCCCCceEE
Confidence            34688999998553        1368899999999999999999876532    4788999998766543 357899999


Q ss_pred             EEeCCC---------------------cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDG---------------------SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg---------------------~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.++++                     +.|+|+|+|++||++||.+|+.++.
T Consensus        69 i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  120 (127)
T 1fgy_A           69 LYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             EECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence            998764                     5899999999999999999998875

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.75  E-value=1.4e-17  Score=136.30  Aligned_cols=101  Identities=13%  Similarity=0.251  Sum_probs=82.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC--eEeEEecCchhhcccCCCccEEecccEEEecCCC-----C
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-----T  118 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~--~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-----~  118 (344)
                      ...+.++|||.++.        ...+.|++|||||+++  .|+||+++.+..    +.+.|+|.+|.+....+.     .
T Consensus        15 ~~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~~~~~~~~   82 (129)
T 1x05_A           15 RGVIIKQGCLLKQG--------HRRKNWKVRKFILREDPAYLHYYDPAGAED----PLGAIHLRGCVVTSVESNSNGRKS   82 (129)
T ss_dssp             CSEEEEEEEEEECC--------SSCCCCEEEEEEEEETTTEEEEECSSCCSS----CSEEEECTTCEEEECCCCCCSSSC
T ss_pred             cCCceEEEEEEecC--------CCCCCCeeEEEEEeCCCCEEEEECCCCCCc----ceeEEEccCCEEEEccCCcccccc
Confidence            45799999998653        1367899999999976  899999875432    478899999877644321     2


Q ss_pred             CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .++++|+|.++++..|+|+|++++||++||.+|+.++...
T Consensus        83 ~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~  122 (129)
T 1x05_A           83 EEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTG  122 (129)
T ss_dssp             SSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence            3789999999988899999999999999999999988644

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=133.30  Aligned_cols=98  Identities=19%  Similarity=0.329  Sum_probs=80.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecc-cEEEecCCCCCCcceE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK-ARCEKAGDYTKRKHVF  124 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~g-a~v~ia~dy~KRKnVF  124 (344)
                      ...+.++|||.++.        ...+.|+++||||+++.|+||+++.+..    +.+.|.|.+ +.+....+...++++|
T Consensus         5 ~~~~~~~G~L~K~~--------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~~v~~~~~~~~~~~~F   72 (115)
T 2dn6_A            5 SSGVLKQGYMMKKG--------HRRKNWTERWFVLKPNIISYYVSEDLKD----KKGDILLDENCCVESLPDKDGKKCLF   72 (115)
T ss_dssp             CCSCSEEEEEEEEC--------TTSSCEEEEEEEECSSCEEEESSTTCSS----EEEEECCCTTCEEEEECCCTTCCSEE
T ss_pred             CCCceEEEEEEecC--------CCCCCcEEeEEEEECCEEEEeCCCCCcc----cCcEEEecCcEEEEECCCCCCCeeEE
Confidence            35789999998653        1468899999999999999999876543    367888986 4566666667788999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .|.+++ +.|+|+|++++||++||.+|+.++.
T Consensus        73 ~i~~~~-r~~~l~a~s~~e~~~Wi~ai~~~~~  103 (115)
T 2dn6_A           73 LVKCFD-KTFEISASDKKKKQEWIQAIHSTIH  103 (115)
T ss_dssp             EEECSS-CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCC-CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            998875 7899999999999999999998864

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.74  E-value=9.2e-18  Score=134.22  Aligned_cols=96  Identities=17%  Similarity=0.249  Sum_probs=74.6

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEE-eCCeEeEEecCchhhcccCCCccEEecccEEE--------e--cCC
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVL-CGQLLCFFKDQDDFVASKAATSPIIIFKARCE--------K--AGD  116 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVL-rG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~--------i--a~d  116 (344)
                      .+.++|||.++.        ...+.|++||||| +++.|+||+++.+..+    .+.|.|....++        .  ..+
T Consensus         4 ~~~~~G~L~K~g--------~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~----~g~i~l~~~~i~l~~~~~v~~v~~~~   71 (112)
T 3aj4_A            4 AFVKSGWLLRQS--------TILKRWKKNWFDLWSDGHLIYYDDQTRQNI----EDKVHMPMDCINIRTGQECRDTQPPD   71 (112)
T ss_dssp             SCSEEEEEEEEC--------SSSCCEEEEEEEECTTSEEEEESSTTCCSE----EEEEEHHHHEEEEEEGGGCCSCCCST
T ss_pred             ceeEEEEEEeeC--------CCCCCeeceEEEEeeCCEEEEEcCCCCCCC----CccccccccceeecccccccccCCCC
Confidence            578999998653        1468999999999 8999999999875332    455555543322        1  223


Q ss_pred             CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       117 y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ..+++|+|.|.+++++.|+|+|+|++||++||.+|+.|.
T Consensus        72 ~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           72 GKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             TCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            345589999999888999999999999999999999775

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=130.03  Aligned_cols=92  Identities=23%  Similarity=0.380  Sum_probs=75.2

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      |.|+|||.++.        ...++|++|||||+++.|+||+++.+...  .+.+.|+|.++.+...   ..++++|.|.+
T Consensus         1 V~k~G~L~K~g--------~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~--~~~~~i~l~~~~~~~~---~~~~~~F~i~~   67 (94)
T 2rsg_A            1 VERCGVLSKWT--------NYIHGWQDRWVVLKNNALSYYKSEDETEY--GCRGSICLSKAVITPH---DFDECRFDISV   67 (94)
T ss_dssp             CCEEEEEEEES--------SSTTCEEEEEEEEETTEEEEESSTTGGGT--CCSEEEETTTCEEEEC---SSCSSEEEEEE
T ss_pred             CCEEEEEEEeC--------CCCCCceEEEEEEECCEEEEEEecccccc--cceeeEecceeeeecC---cccceeEEEEe
Confidence            67999998543        24689999999999999999998766432  3467889988876543   34578999998


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      ++ +.|+|+|+|++||++||.+|+.|
T Consensus        68 ~~-r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           68 ND-SVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             TT-EEEEEECCSSCCTHHHHHHHHHH
T ss_pred             CC-eEEEEECCCHHHHHHHHHHHHhh
Confidence            75 89999999999999999999876

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.73  E-value=2.2e-17  Score=130.19  Aligned_cols=93  Identities=17%  Similarity=0.321  Sum_probs=76.0

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      ++|||.++.        ...+.|+++||||+++.|+||+++.+..  ..+.+.|+|.+|.+....+   .+++|.|.+++
T Consensus         1 ~eG~L~K~g--------~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~--~~~~g~i~L~~~~v~~~~~---~~~~F~i~~~~   67 (103)
T 3rcp_A            1 MEGVLYKWT--------NYLTGWQPRWFVLDNGILSYYDSQDDVC--KGSKGSIKMAVCEIKVHSA---DNTRMELIIPG   67 (103)
T ss_dssp             CEEEEEEEC--------CTTTCEEEEEEEEETTEEEEESSCC-----CCCSCEEEGGGCEEECCTT---CSSEEEEEETT
T ss_pred             CceEEEEcc--------CCCCCeeceEEEEECCEEEEEecCCccc--CCcccEEEeeeeEEEEcCC---CCceEEEEeCC
Confidence            489998653        1368999999999999999999987532  1247889999888765433   47899999998


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++.|+|+|+|++||++||.+|+.|.+
T Consensus        68 ~r~~~l~a~s~~e~~~Wi~al~~a~~   93 (103)
T 3rcp_A           68 EQHFYMKAVNAAERQRWLVALGSSKA   93 (103)
T ss_dssp             TEEEEEECSSHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999997764

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.72  E-value=1.2e-17  Score=140.50  Aligned_cols=104  Identities=25%  Similarity=0.320  Sum_probs=83.1

Q ss_pred             CCeEEEEEEeeeeeeccCCcc-ccccCCceEEEEEeCC-----eEeEEecCchhhcccCCCccEEecccEEEecCCCCCC
Q psy10626         47 PPVEIQGVLERKHELQSGGKK-AAVRSWKSLYTVLCGQ-----LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKR  120 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKK-s~~RsWKkrwfVLrG~-----~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KR  120 (344)
                      ..+.++|||.++..   .++. ...+.|++|||||+++     .|+||+++...   ..+.+.|+|.+|.+... +..++
T Consensus        16 ~~~~~~G~L~K~~~---~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~---~~~~g~I~L~~~~~~~~-~~~~~   88 (150)
T 1wg7_A           16 GGITKHGWLYKGNM---NSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---KEPKGSIFLDSCMGVVQ-NNKVR   88 (150)
T ss_dssp             CCCCCEEEEEECCC---CSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS---SCCSEEECTTTCCEECC-CCSSC
T ss_pred             CCeeEEEEEEEecC---CccccccccCeeEEEEEEecCCCCceEEEEECCCCCC---CCcCcEEecccCEEEec-CCCCC
Confidence            56899999986531   1100 2468999999999997     99999998731   12478899999876654 33678


Q ss_pred             cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      +|+|+|.+++++.|+|+|++++||++||.+|+.++..
T Consensus        89 ~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~  125 (150)
T 1wg7_A           89 RFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQL  125 (150)
T ss_dssp             TTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            9999999998899999999999999999999988753

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.72  E-value=3.1e-17  Score=133.73  Aligned_cols=98  Identities=17%  Similarity=0.265  Sum_probs=80.5

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      ...+.++|||.++.        ...+.|+++||||+++.|+||+++.+..    +.+.|+|.+|.+....+..+++|+|.
T Consensus        15 ~~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~~v~~~~~~~~~~~F~   82 (126)
T 1fao_A           15 PSLGTKEGYLTKQG--------GLVKTWKTRWFTLHRNELKYFKDQMSPE----PIRILDLTECSAVQFDYSQERVNCFC   82 (126)
T ss_dssp             CCTTCEEEEEEEEC--------SSSCCEEEEEEEEETTEEEEESSTTCSS----CSEEEEGGGCCEEEEECSSSSSSEEE
T ss_pred             CCCccEEEEEEEcC--------CCCCCcccEEEEEECCEEEEeCCCCCCC----ceeEEEccceEEEEecccCCCCCEEE
Confidence            34688999998653        1467899999999999999999887533    47889999887433334467889999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.+++ +.|+|+|++++|+++||.+|+.++.
T Consensus        83 i~~~~-r~~~l~a~s~~e~~~Wi~al~~~i~  112 (126)
T 1fao_A           83 LVFPF-RTFYLCAKTGVEADEWIKILRWKLS  112 (126)
T ss_dssp             EEETT-EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEeCC-cEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99864 8999999999999999999998874

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.72  E-value=5.8e-17  Score=129.62  Aligned_cols=99  Identities=20%  Similarity=0.309  Sum_probs=78.6

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcccCCCccEEecccEEEecC-------CC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG-------DY  117 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~-------dy  117 (344)
                      ..+.++|||.++.        ...+.|++|||||+  ++.|+||+++.+..    +.+.|+|.++.+....       +.
T Consensus         6 ~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~----~~g~i~L~~~~~v~~~~~~~~~~~~   73 (117)
T 1v5u_A            6 SGRSYEGILYKKG--------AFMKPWKARWFVLDKTKHQLRYYDHRMDTE----CKGVIDLAEVEAVAPGTPTIGAPKT   73 (117)
T ss_dssp             CSSSEEEEEEECC--------CSSSCCEEEEEEEETTTTEEEEESSSSCSS----CCCEEEGGGEEEEECCCCCTTSCSS
T ss_pred             CCccEEEEEEecC--------CCCCCceeeEEEEECCCCEEEEeecCCCCc----cceEEEccCcEEEeecCcccccccc
Confidence            4688999998653        13689999999999  88999999887643    4788999987644322       12


Q ss_pred             CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .+++++|.|.++ ++.|+|+|+|++||++||.+|+.++.-.
T Consensus        74 ~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~i~~~  113 (117)
T 1v5u_A           74 VDEKAFFDVKTT-RRVYNFCAQDVPSAQQWVDRIQSCLSSG  113 (117)
T ss_dssp             SCTTTCEEEEES-SCEEEEECSSHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCeEEEEECC-CceEEEECCCHHHHHHHHHHHHHHhccC
Confidence            456799999876 4899999999999999999999776543

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.72  E-value=3.3e-17  Score=133.71  Aligned_cols=100  Identities=17%  Similarity=0.283  Sum_probs=79.9

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecC-chhhcccCCCccEEecccEEEecCCC-----
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQ-DDFVASKAATSPIIIFKARCEKAGDY-----  117 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDe-ke~a~~~a~~~~IsL~ga~v~ia~dy-----  117 (344)
                      ...+.++|||.++.        ...+.|++|||||+  +..|+||+++ ...    .+.+.|+|.+|.+....+.     
T Consensus        15 ~~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~----~~~g~i~L~~~~v~~~~~~~~p~~   82 (129)
T 1x1g_A           15 SGTVVKQGYLAKQG--------HKRKNWKVRRFVLRKDPAFLHYYDPSKEEN----RPVGGFSLRGSLVSALEDNGVPTG   82 (129)
T ss_dssp             CSEEEEEEEEEEEC--------SSSSSEEEEEEEEEESSCEEEEECSSSCCS----SCSCCEESTTCCCEECCSSSSCSS
T ss_pred             CCCEEEEEEEEEEC--------CCCCCeeeEEEEEeCCCCeEEEeCCCCcCC----ccceEEECcCCEEEEeCCCCCccc
Confidence            34799999998653        12789999999999  5799999986 322    3578899998776543321     


Q ss_pred             CC---CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        118 TK---RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       118 ~K---RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      .+   ++++|+|.+++++.|+|+|++++||++||.+|+.++..
T Consensus        83 ~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  125 (129)
T 1x1g_A           83 VKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG  125 (129)
T ss_dssp             CSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            12   68999999999889999999999999999999988753

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=134.91  Aligned_cols=97  Identities=18%  Similarity=0.353  Sum_probs=79.7

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ..+.++|||.++..        ..+.|++|||||+  ++.|+||+++.+..  ..+.+.|+|.++.+...   .+++++|
T Consensus         6 ~~~~~~G~L~K~~~--------~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~--~~~~g~I~L~~~~v~~~---~~~~~~F   72 (120)
T 2d9x_A            6 SGENVYGYLMKYTN--------LVTGWQYRFFVLNNEAGLLEYFVNEQSRN--QKPRGTLQLAGAVISPS---DEDSHTF   72 (120)
T ss_dssp             SCCCCEEEEEEEEE--------TTTEEEEEEEEECTTTCEEEEESSGGGSS--SCCSEEEECTTCCEECC---SSSSSCE
T ss_pred             CCCcEEEEEEecCC--------CCCCceEEEEEEECCCCEEEEEecCcccC--CCccceEEcceEEEEec---CCCCCEE
Confidence            36889999986541        4688999999999  47999999887531  13578899999876543   3567999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +|.+++++.|+|+|++++||++||.+|+.++.
T Consensus        73 ~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  104 (120)
T 2d9x_A           73 TVNAASGEQYKLRATDAKERQHWVSRLQICTQ  104 (120)
T ss_dssp             EECCSSSCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            99999889999999999999999999998765

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.70  E-value=6.2e-17  Score=135.97  Aligned_cols=103  Identities=16%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEe---CCeEeEEecCchhhcccCCCccEEecc-cEEEecC--CCCCCcc
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC---GQLLCFFKDQDDFVASKAATSPIIIFK-ARCEKAG--DYTKRKH  122 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr---G~~L~fYKDeke~a~~~a~~~~IsL~g-a~v~ia~--dy~KRKn  122 (344)
                      ..++|||.++.       ....+.|++|||||+   |..|+||+++........+.+.|.|.. +.|..+.  +..+++|
T Consensus        15 ~~~~G~L~K~g-------~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~   87 (126)
T 1v5p_A           15 NRICGFLDIED-------NENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPF   87 (126)
T ss_dssp             CCEECCEEEEC-------TTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSS
T ss_pred             CceEEEEEEeC-------CCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCE
Confidence            45799998553       124689999999999   667888888432111224578899987 4565543  2356789


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      +|.|.++. ++|+|+|+|++||++||++|+.|+.+.+
T Consensus        88 ~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~a~~~~~  123 (126)
T 1v5p_A           88 CFVINALS-QRYFLQANDQKDLKDWVEALNQASKSGP  123 (126)
T ss_dssp             EEEEECSS-CEEEEECSSHHHHHHHHHHHHHTTTTSS
T ss_pred             EEEEECCC-EEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence            99887655 8999999999999999999998886543

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=8.5e-17  Score=131.43  Aligned_cols=96  Identities=16%  Similarity=0.258  Sum_probs=79.0

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC--eEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~--~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ..+.++|||.++..      +...+.|++|||||+++  .|+||+++.+..    +.+.|+|.++.+...  ..+++++|
T Consensus         6 ~~~~~~G~L~K~g~------~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~----~~g~I~L~~~~~~~~--~~~~~~~F   73 (119)
T 2dhk_A            6 SGKKLCGYLSKFGG------KGPIRGWKSRWFFYDERKCQLYYSRTAQDAN----PLDSIDLSSAVFDCK--ADAEEGIF   73 (119)
T ss_dssp             SCCCCEEEEEECSC------SSSSCCCEEEEEEEETTTTEEEEESSTTCCS----CSEEEEGGGCEEEEC--TTGGGCEE
T ss_pred             CCCcEEEEEEecCC------CCCCCCceeEEEEEECCccEEEEECCCCCcc----cccEEECCCCEEEec--CCCCCCEE
Confidence            36789999985531      22468999999999998  999999887642    478899998876553  34678999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .|.++ ++.|+|+|++++||++||.+|+.++
T Consensus        74 ~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~~  103 (119)
T 2dhk_A           74 EIKTP-SRVITLKAATKQAMLYWLQQLQMKR  103 (119)
T ss_dssp             EEECS-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence            99988 5899999999999999999999775

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.70  E-value=3.3e-17  Score=132.50  Aligned_cols=97  Identities=21%  Similarity=0.316  Sum_probs=78.7

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecC--CCCCCcce
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAG--DYTKRKHV  123 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~--dy~KRKnV  123 (344)
                      ..+.++|||.++.        ...+.|+++||||+++.|+||+++.+..    +.+.|.|.++. +....  +..+++++
T Consensus        12 ~~~~~~G~L~K~g--------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~l~~~~~v~~~~~~~~~~~~~~   79 (125)
T 1eaz_A           12 SAVIKAGYCVKQG--------AVMKNWKRRYFQLDENTIGYFKSELEKE----PLRVIPLKEVHKVQECKQSDIMMRDNL   79 (125)
T ss_dssp             CCCSEEEEEEEEC--------TTTCCEEEEEEEECSSEEEEESSTTCSS----CSEEEEGGGCCEEEECTTHHHHTCSSE
T ss_pred             CCccEEEEEEEeC--------CCCCCcceEEEEEeCCEEEEEcCCCCCc----ceeEEEcccceEEeeccccccCCcCCE
Confidence            5789999998553        1468899999999999999999887533    47889999875 33322  23567899


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.|.+++ +.|+|+|++++||++||.+|+.++.
T Consensus        80 F~i~~~~-r~~~l~a~s~~e~~~W~~al~~~i~  111 (125)
T 1eaz_A           80 FEIVTTS-RTFYVQADSPEEMHSWIKAVSGAIV  111 (125)
T ss_dssp             EEEECSS-CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCC-cEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            9999864 7999999999999999999998875

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.70  E-value=5.2e-17  Score=133.40  Aligned_cols=102  Identities=20%  Similarity=0.344  Sum_probs=77.8

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE---EEecC-CCCCCcc
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR---CEKAG-DYTKRKH  122 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~---v~ia~-dy~KRKn  122 (344)
                      ..|.++|||.++..   +   ...+.|++|||||+++.|+||++..+.. ...+.+.|+|.+|.   +..+. +..+++|
T Consensus         3 ~~v~~~G~L~K~~~---~---~~~~~WkrRwfvL~~~~L~yyk~~~d~~-~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~   75 (134)
T 2y7b_A            3 SSVEERGFLTIFED---V---SGFGAWHRRWCVLSGNCISYWTYPDDEK-RKNPIGRINLANCTSRQIEPANREFCARRN   75 (134)
T ss_dssp             CCCCEEEEEEEEEE---E---TTEEEEEEEEEEEETTEEEEESSHHHHT-TSCCSEEEEGGGBCSSSCEECCTTTCCCTT
T ss_pred             CCceEEeeEEEEcC---C---CCCCCcEEEEEEEECCEEEEECCCCccc-ccCceEEEEhhhCccccccccchhhccCCC
Confidence            36889999996632   1   2468999999999999999999654311 12357889999987   44433 2357899


Q ss_pred             eEEEEe--CCC-----------------cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        123 VFRLYC--TDG-----------------SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       123 VFrL~t--pdg-----------------~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +|+|.+  ++.                 ..|+|+|++++||++||.+|+.++
T Consensus        76 ~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i  127 (134)
T 2y7b_A           76 TFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVL  127 (134)
T ss_dssp             EEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999987  321                 379999999999999999999775

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.69  E-value=2.1e-16  Score=127.15  Aligned_cols=92  Identities=13%  Similarity=0.257  Sum_probs=74.9

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecCCCCCCcceEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGDYTKRKHVFR  125 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~dy~KRKnVFr  125 (344)
                      ..+.++|||.++..       ...+.|++|||||+++.|+||+++.+..    +.+.|.|.++. +... +    +++|.
T Consensus         6 ~~~~~~G~L~K~~~-------~~~~~WkkR~fvL~~~~L~yy~~~~~~~----~~g~i~l~~~~~v~~~-~----~~~F~   69 (115)
T 2cod_A            6 SGKVKSGWLDKLSP-------QGKRMFQKRWVKFDGLSISYYNNEKEMY----SKGIIPLSAISTVRVQ-G----DNKFE   69 (115)
T ss_dssp             SCCCEEEEEEECCS-------SSSSCCEEEEEEECSSEEEEEESSCCSS----CCCEEETTTEEEEEEE-T----TTEEE
T ss_pred             CCccEEEEEEEcCC-------CCCCCCceEEEEEECCEEEEEcCCCCcc----cCCEEECCcceEEEeC-C----CCEEE
Confidence            46899999985531       1367899999999999999999987643    47889998764 3332 2    68999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.++ ++.|+|+|++++||++||.+|+.++
T Consensus        70 i~~~-~r~~~l~a~s~~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           70 VVTT-QRTFVFRVEKEEERNDWISILLNAL   98 (115)
T ss_dssp             EEES-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence            9976 5899999999999999999999876

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=136.39  Aligned_cols=105  Identities=17%  Similarity=0.236  Sum_probs=81.2

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecCC-----CCCC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGD-----YTKR  120 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~d-----y~KR  120 (344)
                      ..+.+||||.++..   +-++...++|++|||||+++.|+||+++.+...   ..+.|+|.++. +....+     ..++
T Consensus        13 ~~~i~EG~L~Kr~~---~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~---~~G~I~L~~~~~v~~~~~~~~~~~~~~   86 (164)
T 2lul_A           13 FNTILEEILIKRSQ---QKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKY---RKGFIDVSKIKCVEIVKNDDGVIPCQN   86 (164)
T ss_dssp             SSEEEEEEEEEECC---CCSSSCCCCEEEEEEEEESSEEEEECCCSSSCC---CCCEEEGGGCCEEEECCCCSSSCCSSS
T ss_pred             CCeeEEEEEEEecC---CCCCCCCCCceeEEEEEECCEEEEEeccCcccc---cccEEEEeeeEEEEeccccccCccccc
Confidence            46999999996642   123345689999999999999999998765322   35789998754 333322     2457


Q ss_pred             cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +++|+|.+++ ++|+|+|+|++||++||.+|+.++.-.
T Consensus        87 ~~~f~i~t~~-rt~~l~A~s~~e~~~Wi~aL~~~i~~n  123 (164)
T 2lul_A           87 KYPFQVVHDA-NTLYIFAPSPQSRDLWVKKLKEEIKNN  123 (164)
T ss_dssp             CSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred             ceeEEEecCC-cEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence            8999999987 789999999999999999999998744

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.68  E-value=2.5e-16  Score=142.85  Aligned_cols=103  Identities=20%  Similarity=0.325  Sum_probs=84.0

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC---CCCCCcc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRKH  122 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRKn  122 (344)
                      +..+.++|||.++...    .....+.|++|||||+++.|+||+++....    +.+.|.|.++.+....   ...+++|
T Consensus       103 l~~v~k~G~L~Kkg~~----~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~----p~g~I~L~~~~~v~~~~~~~~~~k~~  174 (211)
T 1u5e_A          103 LPFVIKAGYLEKRRKD----HSFLGFEWQKRWCALSKTVFYYYGSDKDKQ----QKGEFAIDGYDVRMNNTLRKDGKKDC  174 (211)
T ss_dssp             CSSEEEEEEEEEEEHH----HHTTTCCCEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred             cCCccEEEEEEEECCC----CCcCCCCcEeEEEEEECCEEEEEcCCCCcc----ceEEEEeCCcEEEEcCCccccCCCCC
Confidence            4569999999966421    011357999999999999999999987643    4789999998876543   2356789


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +|+|.+++++.|+|+|++++||+.||.+|+.++.
T Consensus       175 ~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~  208 (211)
T 1u5e_A          175 CFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ  208 (211)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            9999999889999999999999999999998863

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-16  Score=126.78  Aligned_cols=94  Identities=14%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      ..+.++|||.++..       ...+.|++|||||+++.|+||+++...     ....|.|..|.+...   ..++++|+|
T Consensus         8 ~~~~~~G~L~K~~~-------~~~k~WkkR~fvL~~~~L~yyk~~~~~-----~~~~i~l~~~~v~~~---~~~~~~F~I   72 (114)
T 2da0_A            8 YGSEKKGYLLKKSD-------GIRKVWQRRKCSVKNGILTISHATSNR-----QPAKLNLLTCQVKPN---AEDKKSFDL   72 (114)
T ss_dssp             CCSCEEEEEEEECS-------SSCCCEEEEEEEEETTEEEECCSSCCS-----CCEEEETTTSEEEEC---SSSSSCEEE
T ss_pred             CCccEEEEEEEeCC-------CCCCCceeEEEEEeCCEEEEEcCCCCC-----CCCEEEeeeeEEEEC---CCCCCEEEE
Confidence            46889999986541       123899999999999999999997542     245567777766533   246789999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .++ ++.|+|+|+|++||++||.+|+.+..
T Consensus        73 ~~~-~r~~~l~a~s~~e~~~Wi~al~~~~~  101 (114)
T 2da0_A           73 ISH-NRTYHFQAEDEQDYVAWISVLTNSKE  101 (114)
T ss_dssp             EET-TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EcC-CcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            986 58999999999999999999997753

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.68  E-value=6.2e-17  Score=132.00  Aligned_cols=97  Identities=18%  Similarity=0.269  Sum_probs=72.2

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeC-CeEeEEecCchhhcccCCCccEEecccEEE---ecCCCCCCcce
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-QLLCFFKDQDDFVASKAATSPIIIFKARCE---KAGDYTKRKHV  123 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-~~L~fYKDeke~a~~~a~~~~IsL~ga~v~---ia~dy~KRKnV  123 (344)
                      .+.++|||.++.        ...+.|++|||||++ +.|+||+++.+..+    .+.|+|..+.+.   +.....+++|+
T Consensus         7 ~~~~~G~L~K~g--------~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~----~g~i~L~~~~~~~~~~~~~~~~~~~~   74 (125)
T 1unq_A            7 AIVKEGWLHKRG--------EYIKTWRPRYFLLKNDGTFIGYKERPQDVD----QREAPLNNFSVAQCQLMKTERPRPNT   74 (125)
T ss_dssp             CEEEEEEEEEEC--------SSSCCEEEEEEEEETTSEEEEESSCCCSHH----HHTSCSEEEECTTCEEEEECSSSTTE
T ss_pred             CeeEEeeEEecc--------CCccCccCcEEEEecCCEEEEEeCCCCCCC----CceeEccceeEEeeeecccccCCCCE
Confidence            589999998553        136899999999996 69999998876432    334444433211   11122568899


Q ss_pred             EEEEe---CCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYC---TDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~t---pdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|.+   .....|+|+|++++||++||.+|+.++.
T Consensus        75 F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           75 FIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             EEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            99997   4557999999999999999999998764

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.67  E-value=2.2e-16  Score=138.52  Aligned_cols=103  Identities=15%  Similarity=0.276  Sum_probs=77.6

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecC----chhhcccCCCccEEecccE-EEec---CCC-C
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQ----DDFVASKAATSPIIIFKAR-CEKA---GDY-T  118 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDe----ke~a~~~a~~~~IsL~ga~-v~ia---~dy-~  118 (344)
                      .|.++|||.++.   .++++...++|++|||||+++.|+||+++    .+..    +.+.|+|.++. ++..   .+. .
T Consensus         2 ~vikeG~L~Kr~---~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~----~~G~I~L~~~~~ve~~~~~~~~~~   74 (169)
T 1btk_A            2 AVILESIFLKRS---QQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGS----KKGSIDVEKITCVETVVPEKNPPP   74 (169)
T ss_dssp             CCCEEEEEEEEC---CCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEE----EEEEEEGGGEEEEEECCCCSSCCG
T ss_pred             ceEEEEEEEEec---CCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCc----eeeEEECcceEEEEeccCCCCcch
Confidence            588999998653   12223446899999999999999999983    3322    36889998765 3433   211 1


Q ss_pred             CCc---------------------ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        119 KRK---------------------HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       119 KRK---------------------nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +++                     |+|+|.+++ +.|+|+|+|++||++||.+|+.++...
T Consensus        75 ~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~aI~~~i~~n  134 (169)
T 1btk_A           75 ERQIPRRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIRYN  134 (169)
T ss_dssp             GGCC---------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred             hcccccccCcccccccccccccccccEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHHHC
Confidence            222                     899999987 689999999999999999999888643

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.67  E-value=6.3e-16  Score=127.76  Aligned_cols=101  Identities=19%  Similarity=0.360  Sum_probs=70.5

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeC-CeEeEEecCchhhcccCCCccEEecccEEEecC-----------
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-QLLCFFKDQDDFVASKAATSPIIIFKARCEKAG-----------  115 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~-----------  115 (344)
                      .+.++|||.++.     | +...++|++|||||++ +.|+||++..+.... .....|+|..+.+....           
T Consensus         3 ~~~k~G~L~K~~-----g-~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~-~~~~~i~l~~~~~~~~~~~i~l~~~~~~   75 (128)
T 2rlo_A            3 IPIKQSFLLKRS-----G-NSLNKEWKKKYVTLSSNGFLLYHPSINDYIHS-THGKEMDLLRTTVKVPGKRPPRAISAFG   75 (128)
T ss_dssp             CEEEEEEEEEEC-----S-CSTTCCEEEEEEEEETTTEEEEESSHHHHHHT-CSCEEEESSSCEEECSSCCCCCSSCCCS
T ss_pred             cceeEEEEEEec-----C-CCccCCccEEEEEEeCCCEEEEecchhhhccc-cCCCeeeeeeeEEecCCCcccccccccc
Confidence            578999998652     1 1246899999999996 688888764332110 01123444443332211           


Q ss_pred             --------CCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        116 --------DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       116 --------dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                              ....++++|.|.++++++|+|+|+|++||++||.+|+.++
T Consensus        76 ~~~~~~~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i  123 (128)
T 2rlo_A           76 PSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI  123 (128)
T ss_dssp             CCSCCCCSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence                    0125789999999998999999999999999999999775

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.61  E-value=1.2e-15  Score=148.04  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=77.6

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      ..+.++|||.++..   .|  ...+.|++|||||+++.|+||++.. .    .+.+.|+|.+|.+..+.+ .+|+|||+|
T Consensus       276 ~~~~k~G~L~K~~~---~~--~~~~~WkkRwfvL~~~~L~y~k~~~-~----~~~~~i~l~~~~v~~~~~-~~r~~~F~i  344 (385)
T 2q13_A          276 NLTRKAGYLNARNK---TG--LVSSTWDRQFYFTQGGNLMSQARGD-V----AGGLAMDIDNCSVMAVDC-EDRRYCFQI  344 (385)
T ss_dssp             CCSCCEEEEEEC-------------CCEEEEEEEETTEEEEECSSC-S----SCEEEEECTTCEEEEECC-TTCSSEEEE
T ss_pred             CCccEEEEEEEecC---CC--CCcCCceeEEEEEECCEEEEecCCC-c----CCCceEEccceEEEeccc-cCCCceEEE
Confidence            36889999996531   11  1234799999999999999999832 1    235789999998776544 578899999


Q ss_pred             EeCCC-cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        127 YCTDG-SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       127 ~tpdg-~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .++++ ++|+|+|+|++||++||.+|+.++.
T Consensus       345 ~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~  375 (385)
T 2q13_A          345 TSFDGKKSSILQAESKKDHEEWICTINNISK  375 (385)
T ss_dssp             ECTTSCBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred             EeCCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            99987 8999999999999999999998764

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=147.09  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=80.1

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      ...+.|+|||+++...   |  ...+.|++|||||+++.|+||+.....     +...|+|..|.|..+.+ .+|+|||+
T Consensus       298 ~~~~~k~G~L~k~~~~---g--~~~~~W~rrwfvl~~~~l~y~~~~~~~-----~~~~~~l~~~~v~~~~~-~~r~~cF~  366 (407)
T 4h8s_A          298 RNLIQKAGYLNLRNKT---G--LVTTTWERLYFFTQGGNLMCQPRGAVA-----GGLIQDLDNCSVMAVDC-EDRRYCFQ  366 (407)
T ss_dssp             CSCSCCEEEEEEEEEC---S--SSCEEEEEEEEEECSSCEECCCTTCSS-----CCCCBCSSCCEEEEECC-TTCSSEEE
T ss_pred             CCcceeeceeeeeccC---C--CCCCCceEEEEEEECCEEEEEeCCCCC-----CCeEEECCceEEEECCC-CCCCceEE
Confidence            4568999999865421   1  124689999999999999999865432     35577888998876544 56789999


Q ss_pred             EEeCCC-cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDG-SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg-~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.++++ .+|+|||+|++||++||.+|+.++.
T Consensus       367 i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~  398 (407)
T 4h8s_A          367 ITTPNGKSGIILQAESRKENEEWICAINNISR  398 (407)
T ss_dssp             EECTTSSCCEEEECSSSHHHHHHHHHHHHHHS
T ss_pred             EEecCCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            999976 5899999999999999999998875

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.58  E-value=8.4e-15  Score=128.48  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCc---------hhh----c-----------------ccC
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQD---------DFV----A-----------------SKA   99 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDek---------e~a----~-----------------~~a   99 (344)
                      .|+|||+.|.        ...+.|+++||||+++.|||++...         +..    +                 ...
T Consensus         2 ~k~G~L~~~~--------~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e   73 (150)
T 2fjl_A            2 IKNGILYLED--------PVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILE   73 (150)
T ss_dssp             CEEEEEEEEE--------TTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSC
T ss_pred             CcceEEEeec--------CCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccc
Confidence            5899999775        2579999999999999999998221         111    0                 000


Q ss_pred             ---------------CCccEEecccEEEecCC-CCCCcceEEEEeCCC--cEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        100 ---------------ATSPIIIFKARCEKAGD-YTKRKHVFRLYCTDG--SEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       100 ---------------~~~~IsL~ga~v~ia~d-y~KRKnVFrL~tpdg--~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                                     ..+.|+|.||.|....+ ...++|||+|.+++.  ..|+|+|++++||++||++|++|+..
T Consensus        74 ~~~~~l~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~  149 (150)
T 2fjl_A           74 PEREHLDENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  149 (150)
T ss_dssp             TTCSSSCTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             hhHhcccccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence                           14789999999997664 467899999998753  57999999999999999999999863

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.58  E-value=7.4e-15  Score=137.84  Aligned_cols=99  Identities=21%  Similarity=0.328  Sum_probs=77.3

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC-------eEeEEecCchhhcc-cCCCccEEecccE-EEecCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-------LLCFFKDQDDFVAS-KAATSPIIIFKAR-CEKAGD  116 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~-------~L~fYKDeke~a~~-~a~~~~IsL~ga~-v~ia~d  116 (344)
                      ...+.++|||.++            ++|++|||||+++       .|+||+++.+.... ..+.+.|+|.+|. |....+
T Consensus         7 ~~~v~k~G~L~K~------------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~   74 (264)
T 1qqg_A            7 FSDVRKVGYLRKP------------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD   74 (264)
T ss_dssp             --CEEEEEEEECT------------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC
T ss_pred             CCCccEEEEEEEC------------CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC
Confidence            4579999999732            6899999999998       99999998763221 1357889999876 333333


Q ss_pred             CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       117 y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                       .+++|+|.|.++ .+.|+|+|+|++||++||.+|+.++.-.
T Consensus        75 -~~~~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           75 -SKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             -SSCSSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             -CCCCcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence             678899999998 4899999999999999999999876533

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.57  E-value=8e-15  Score=141.79  Aligned_cols=98  Identities=20%  Similarity=0.336  Sum_probs=80.8

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      .+.++|||.++.     +   ..+.|++|||||+++.|+||+++.+..    +.+.|+|.++.+.... ..+++++|+|.
T Consensus       212 ~~~k~G~L~K~g-----~---~~k~WkkRwFVL~~~~L~Yyk~~~~~~----p~G~I~L~~~~v~~~~-~~~~~~~F~I~  278 (347)
T 2r09_A          212 NPDREGWLLKLG-----G---RVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENLSIREVE-DPRKPNCFELY  278 (347)
T ss_dssp             CCCEEEEEEEEC-----S---SSCCEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEEEC-CSSCSSEEEEE
T ss_pred             ccccCCeeEecC-----C---CcccceeEEEEEcCCEEEEEcCCCccC----CcEEEEcCCeEEEEcc-CCCCCCEEEEE
Confidence            368999998543     1   268999999999999999999886533    4788999998876543 46789999999


Q ss_pred             eCC---------------------CcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        128 CTD---------------------GSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       128 tpd---------------------g~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +++                     .+.|+|+|+|++||++||.+|+.++.-.
T Consensus       279 ~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~  330 (347)
T 2r09_A          279 NPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  330 (347)
T ss_dssp             CSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred             eCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            874                     3789999999999999999999887533

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.57  E-value=7.7e-15  Score=133.82  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=81.8

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ..+.+.++|||.++....   ++...+.|++|||||+++.|+||+++.+..    +.+.|+|.++.+...  ...++|+|
T Consensus        54 ~~~~~~k~G~L~K~g~~~---~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~----~~g~I~L~~~~~v~~--~~~k~~~F  124 (228)
T 3tfm_A           54 SKQEALKQGWLHNNGGGS---STLSRRNWKKRWFVLRQSKLMYFENDSEEK----LKGTVEVRSAKEIID--NTNKENGI  124 (228)
T ss_dssp             SCCCSSEEEEEEECGGGC---SSSCGGGCEEEEEEECSSEEEEESSTTCCS----EEEEEEGGGCSEEEE--ETTTTSEE
T ss_pred             cCCCcceEEEEEEECCCc---CCcccCCceEEEEEEeCCEEEEEeCCCCcc----eeEEEEcCCCEEecc--CCCCCcEE
Confidence            356799999998654210   122358999999999999999999987633    367899998765332  23678999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +|.+++ +.|+|+|+|++||++||.+|+.++...
T Consensus       125 ~I~t~~-r~~~l~A~s~~e~~~Wv~aL~~~i~~~  157 (228)
T 3tfm_A          125 DIIMAD-RTFHLIAESPEDASQWFSVLSQVHSST  157 (228)
T ss_dssp             EEECSS-CEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             EEEcCC-cEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            998865 899999999999999999999988743

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.52  E-value=2.4e-14  Score=131.69  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC-----CCCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD-----YTKR  120 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d-----y~KR  120 (344)
                      .....++|||+++.        ...++|++|||||+++.|+||+++.+..+ ......+.|.++.+....+     ...+
T Consensus       165 ~~~p~~~G~L~k~~--------~~~k~WkkR~fvL~~~~L~yyk~~~~~~~-~~~i~l~~l~~~~v~~~~~~~~~~~~~~  235 (291)
T 3tca_A          165 IIVPELEGALYLKE--------DGKKSWKRRYFLLRASGIYYVPKGKTKTS-RDLACFIQFENVNIYYGIQCKMKYKAPT  235 (291)
T ss_dssp             CCCCCCEEEEEEEC--------TTSSCEEEEEEEECSSEEEECCTTCCSST-TTCEEEEEGGGCEEEEECSHHHHHCCSS
T ss_pred             CCCCceEEEEEEeC--------CCCCCceEEEEEEeCCEEEEEecCccccc-cCceeeccceeEEEEecCccccccCCCC
Confidence            34567999999654        23588999999999999999998876432 1112233445555543332     2457


Q ss_pred             cceEEEEeCCC-----cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        121 KHVFRLYCTDG-----SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       121 KnVFrL~tpdg-----~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +|+|.|.+++.     ..|+|+|+|++||..||.||+.|.
T Consensus       236 ~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          236 DHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             SCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            89999998753     469999999999999999998764

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.47  E-value=1e-13  Score=136.17  Aligned_cols=101  Identities=19%  Similarity=0.269  Sum_probs=76.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE----EEe-cCCCC--
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR----CEK-AGDYT--  118 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~----v~i-a~dy~--  118 (344)
                      ...+.++|||.++..       ...++|++|||||+++.|+||+++.+..    +.+.|.|..+.    +.. .....  
T Consensus       266 ~~~~~k~G~L~K~g~-------~~~k~WKkRwFVL~~~~L~YYk~~~d~~----~~G~I~L~~~~~~~~v~~~~~~~~~~  334 (386)
T 3lju_X          266 SRNYLKEGYMEKTGP-------KQTEGFRKRWFTMDDRRLMYFKDPLDAF----ARGEVFIGSKESGYTVLHGFPPSTQG  334 (386)
T ss_dssp             SCCCSEEEEEEECCT-------TSCSCCEEEEEEEETTEEEEESSTTCSB----CSEEEECCCGGGTCEEEESCCTTCCS
T ss_pred             ccccceeeeEEEECC-------CCCCCCcccEEEEECCEEEEEecCCCcc----cceEEEeecceeeeeecccCCccccc
Confidence            346889999985431       1238999999999999999999987643    36788885432    222 22222  


Q ss_pred             -CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        119 -KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       119 -KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                       +++|+|+|.+++ +.|+|+|++++||++||.+|+.++..+
T Consensus       335 ~~~~~~F~I~t~~-rty~l~A~s~~e~~~Wi~aL~~~i~~p  374 (386)
T 3lju_X          335 HHWPHGITIVTPD-RKFLFACETESDQREWVAAFQKAVDRP  374 (386)
T ss_dssp             CCSCEEEEEECSS-CEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             cCCCcEEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence             237999999986 899999999999999999999887644

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.43  E-value=6.4e-13  Score=110.70  Aligned_cols=97  Identities=16%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             EEEEEee-eeeeccCCcccccc-CCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEE-Eec-------CCCCCC
Q psy10626         51 IQGVLER-KHELQSGGKKAAVR-SWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC-EKA-------GDYTKR  120 (344)
Q Consensus        51 KeGwL~R-Kq~lesgGKKs~~R-sWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v-~ia-------~dy~KR  120 (344)
                      .+|||.. |.    +   ...+ +|+++||||+++.|+||+++.... +..+.+.|+|..+.+ ..+       .+.+..
T Consensus         3 ~eGwl~~pk~----~---~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~   74 (117)
T 2rov_A            3 LEGWLSLPVR----N---NTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSNPYMVLDIDKLFHVRPVTQTDVYRADAKEI   74 (117)
T ss_dssp             SEEEEECCCC----S---SSSCCCCCEEEEEEETTEEEEESCHHHHH-TTCCSEEECGGGEEEEEECCTTTCSSSCTTTG
T ss_pred             eEEEEEeecC----C---CccCCCcEEEEEEEECCEEEEEECCCCcc-cCCceEEEECcccEEEEEcccccccccccccC
Confidence            5899974 21    1   1345 899999999999999999875431 123467788865443 211       222445


Q ss_pred             cceEEEEeCC-----CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        121 KHVFRLYCTD-----GSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       121 KnVFrL~tpd-----g~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +++|+|...+     ...++|+|+|++|++.||.+|+.++
T Consensus        75 p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i  114 (117)
T 2rov_A           75 PRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKI  114 (117)
T ss_dssp             GGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            7899998743     5799999999999999999999765

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.4e-13  Score=117.67  Aligned_cols=102  Identities=14%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      ....++||...     +.++...+.|+++||||+++.|+|||+..+..  ..+.+.|+|.||.|........+++.|+|.
T Consensus         8 ~pel~~~l~~~-----~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~ePig~I~L~gceV~pd~~~~~~kf~ikl~   80 (137)
T 2ys3_A            8 IPELKDHLRIF-----RPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GDPIQQLNLKGCEVVPDVNVSGQKFCIKLL   80 (137)
T ss_dssp             CCCEECCCEEC-----CTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SCCSCCBCTTTCEEEECCBGGGTBEEEEEE
T ss_pred             CcchhHHHHhh-----CccccccccceeEEEEEeCCEEEEECCchhcc--CCCceEEECCCCEEeccccccCCceEEEEE
Confidence            35677888643     24567789999999999999999999887642  135788999999987765446788998888


Q ss_pred             eCC---CcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        128 CTD---GSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       128 tpd---g~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .+.   .++|.|.|+++++|.+||.|++.|+.
T Consensus        81 iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAsk  112 (137)
T 2ys3_A           81 VPSPEGMSEIYLRCQDEQQYARWMAGCRLASK  112 (137)
T ss_dssp             EECSSSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCceEEEEECCCHHHHHHHHHHHHHhcc
Confidence            662   37899999999999999999998884

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.39  E-value=4.8e-13  Score=131.43  Aligned_cols=96  Identities=14%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEE--eCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVL--CGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVL--rG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ....++|||.++..        ..++|+++||||  +++.|+||+++.+..    +.+.|.|.++.+....+...++++|
T Consensus       144 ~~~~keG~L~KrG~--------~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~----p~g~I~L~~~~~~~~~~~~~~~~~f  211 (386)
T 3lju_X          144 SAGYREGFLWKRGR--------DNGQFLSRKFVLTEREGALKYFNRNDAKE----PKAVMKIEHLNATFQPAKIGHPHGL  211 (386)
T ss_dssp             HSSEEEEEEEEECS--------SSCCEEEEEEEEETTTTEEEEEC-----C----CSEEEEGGGEEEEECHHHHTSTTCE
T ss_pred             cccccccceeeecc--------ccCCceEEEEEEEcCCCEEEEECCCCccC----cccEEEeeccEEEEcccccCCCceE
Confidence            34689999996641        368999999999  899999999987543    4789999986655543334588999


Q ss_pred             EEE---eCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        125 RLY---CTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       125 rL~---tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .|.   ....+.|+|+|+|.+||++||.+|+.+
T Consensus       212 ~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a  244 (386)
T 3lju_X          212 QVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAA  244 (386)
T ss_dssp             EEEEEETTEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCceEEEEEcCCHHHHHHHHHhhhhc
Confidence            998   244589999999999999999999876

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.30  E-value=4.5e-12  Score=122.89  Aligned_cols=97  Identities=16%  Similarity=0.311  Sum_probs=71.1

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhcccCCCccEEecccE---EEecCCCCCCcce
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVASKAATSPIIIFKAR---CEKAGDYTKRKHV  123 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~~a~~~~IsL~ga~---v~ia~dy~KRKnV  123 (344)
                      .|.|+|||.++.        ...++|++|||||+ ++.|+|||++.....    .+.|.|....   |.+......++|+
T Consensus         5 ~v~keG~L~K~g--------~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~   72 (446)
T 4ejn_A            5 AIVKEGWLHKRG--------EYIKTWRPRYFLLKNDGTFIGYKERPQDVD----QREAPLNNFSVAQCQLMKTERPRPNT   72 (446)
T ss_dssp             CEEEEEEEEEEE--------TTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTE
T ss_pred             eEEEEeeEEeec--------cccccccceEEEEeeCCEEEEEecCCCCCc----cCcccccCccccceeecCCCCCCCce
Confidence            699999999654        24789999999998 899999999876432    3444554422   2222233567899


Q ss_pred             EEEEeCCCcEE---EEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCTDGSEF---LFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tpdg~ey---LFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.|.+.+...+   .|++++.+++++|+.+|+.++.
T Consensus        73 f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~  108 (446)
T 4ejn_A           73 FIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD  108 (446)
T ss_dssp             EEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             eEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence            99998887766   7999999999999999998753

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.4e-11  Score=102.29  Aligned_cols=100  Identities=23%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeC------CeEeEEecCchhhcccCCCccEEecccEEE-ecCCC---
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG------QLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDY---  117 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG------~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~dy---  117 (344)
                      .+.|+|||+..+ ...    .+ +.|+++||||..      ..|-||..++....+..+...|.|..|+.- .+.+.   
T Consensus        11 ~~vk~G~L~~q~-q~~----fg-kKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~   84 (127)
T 2d9w_A           11 GAVKQGFLYLQQ-QQT----FG-KKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASS   84 (127)
T ss_dssp             CSSEEEEEEECB-CSS----SS-CBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSS
T ss_pred             ccccceEEEecc-cch----hh-hhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCC
Confidence            689999998443 211    22 249999999974      689999877654322234567889888633 33222   


Q ss_pred             CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .+..++|.|.|++ +.|+|+|++ .|+.+||.+|...+
T Consensus        85 pk~~~aF~l~T~e-r~~~laAe~-~E~~~Wi~~ic~~a  120 (127)
T 2d9w_A           85 PRDTSAFFLETKE-RLYLLAAPA-AERGDWVQAICLLA  120 (127)
T ss_dssp             CSSCEEEEEEESS-CEEEEEECH-HHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEeCC-cEEEEEeCc-HHHHHHHHHHHHHh
Confidence            2677999999998 899999996 49999999998665

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.17  E-value=1.2e-10  Score=103.95  Aligned_cols=101  Identities=10%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ....+||..-     +.||...|.||++|||++++.|+|||.+++..  ..+.+.|.|.||.|..+-.-...|+.|+|..
T Consensus        47 PeL~dyLk~~-----~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDVnva~~Kf~IkL~v  119 (173)
T 4f7h_A           47 PELADYIKVF-----KPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDVNISGQKFNIKLLI  119 (173)
T ss_dssp             TCEEEEEEEE-----CCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEEETTTTEEEEEEEE
T ss_pred             hhhHhHHHhh-----cchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccccccccceeEEEec
Confidence            3477999642     23577899999999999999999999988743  2356789999999887655567788888776


Q ss_pred             C---CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        129 T---DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       129 p---dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +   +..+|+|.|+++.++..|+.|++.|+.
T Consensus       120 P~~~gm~e~~Lrcd~E~qya~WMAAcrLAsk  150 (173)
T 4f7h_A          120 PVAEGMNEIWLRCDNEKQYAHWMAACRLASK  150 (173)
T ss_dssp             EETTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cCCCCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence            5   557899999999999999999999885

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=109.24  Aligned_cols=100  Identities=19%  Similarity=0.144  Sum_probs=72.1

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCC-----CCc
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYT-----KRK  121 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~-----KRK  121 (344)
                      ....++|||+.|..        +.+.|+++||+|+++.||||+..... +.......+.|.+..|-...+..     ..+
T Consensus       130 ~~P~~~G~L~~ke~--------~~K~WkkRyfvLr~sgLy~~~k~~sk-~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~  200 (256)
T 3hk0_A          130 SSPEIQGFLHVKEL--------GKKSWKKLYVCLRRSGLYCSTKGTSA-APRHLQLLADLEDSNIFSLIAGRKQYNAPTD  200 (256)
T ss_dssp             SCEEEEEEEEEECT--------TSSCEEEEEEEEETTEEEEESSTTCC-CGGGEEEEECCTTEEEEEESSTHHHHCCSSS
T ss_pred             CCCcceeEEEEecC--------CCCcceEEEEEEeCCEEEEEecCCCC-ccccceEEEEcCCCEEEEecccccccCCCCC
Confidence            45789999986641        35899999999999999999866532 11111122467766555444332     237


Q ss_pred             ceEEEEeCCC-----cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        122 HVFRLYCTDG-----SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       122 nVFrL~tpdg-----~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ++|.|+....     ..|+|+|+|+++|..||.+|+.|.
T Consensus       201 ~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak  239 (256)
T 3hk0_A          201 HGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLK  239 (256)
T ss_dssp             EEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            9999996632     369999999999999999999774

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.13  E-value=2.4e-10  Score=101.19  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=77.2

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ....+||..-     +.||...|.||++|||+++..|++||++++..  ..+...|+|.||.|...-.-...|+.|+|..
T Consensus        26 PeL~dyLk~~-----~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDVnva~~Kf~ikL~i   98 (165)
T 4bbk_A           26 PKLADYLKLF-----RPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDVNVSGRKFGIKLLI   98 (165)
T ss_dssp             CCEEEEEEEE-----C-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEEETTTTEEEEEEEE
T ss_pred             hhhHhHHHhh-----cccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEecccccccceeeEEEec
Confidence            4577999642     23567899999999999999999999988743  2356679999999886555567788898865


Q ss_pred             C---CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        129 T---DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       129 p---dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +   +..+++|.++++.+...|+.|++.|+.
T Consensus        99 p~~~gm~e~~LrcdsE~QYa~WMAAcrLAsk  129 (165)
T 4bbk_A           99 PVADGMNEVYLRCDHEDQYARWMAACILASK  129 (165)
T ss_dssp             EETTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcceeeeeecCCHHHHHHHHHHhhhccc
Confidence            5   346999999999999999999999886

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.10  E-value=1.1e-10  Score=111.20  Aligned_cols=100  Identities=19%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC-----CCCc
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-----TKRK  121 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-----~KRK  121 (344)
                      ....++|||+.|..        +.+.|+++||||+++.||||+.... +........+.|.++.|-...+.     ...+
T Consensus       156 ~~pe~~G~L~~k~~--------~~k~WkkRyfvLr~sgLyy~~K~~s-k~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~  226 (281)
T 4gmv_A          156 TVPEIEGVLWLKDD--------GKKSWKKRYFLLRASGIYYVPKGKA-KVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTD  226 (281)
T ss_dssp             CCCCCEEEEEEECT--------TSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCS
T ss_pred             CCCccEEEEEEECC--------CCCCCeEEEEEEeCCEEEEEeCCCC-CccccceEEEEcCCcEEEEecccccccCCCCC
Confidence            46789999987641        3579999999999999998886543 22222234456777665543321     3458


Q ss_pred             ceEEEEeCC-----CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        122 HVFRLYCTD-----GSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       122 nVFrL~tpd-----g~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ++|.|..+.     ...|+|+|+|++++..||.+|+.|.
T Consensus       227 ~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak  265 (281)
T 4gmv_A          227 YCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAK  265 (281)
T ss_dssp             CEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence            999999753     3589999999999999999999764

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.63  E-value=1.3e-07  Score=81.43  Aligned_cols=106  Identities=17%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEe----C--CeEeEEecCchhhcccCCCccEEec---ccEEEecCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC----G--QLLCFFKDQDDFVASKAATSPIIIF---KARCEKAGD  116 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr----G--~~L~fYKDeke~a~~~a~~~~IsL~---ga~v~ia~d  116 (344)
                      ...+.+||.|.+-......+--.....|+++++||+    |  ..|-||...+..++    ...|.+.   +.......+
T Consensus        15 ~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKp----K~~i~cs~I~EVR~tt~LE   90 (136)
T 1v5m_A           15 LVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP----KVSIPLSAIIEVRTTMPLE   90 (136)
T ss_dssp             SCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC----SSCEETTTCCBCCCCCCSS
T ss_pred             cceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCC----ccccchhhhhhhhhccccc
Confidence            457899999976432211100113468999999997    2  45678866654332    3344433   221112234


Q ss_pred             CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       117 y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ...+.|+|-|++.++.+|+|+|.|+.||+.|+..|+...
T Consensus        91 mPD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~  129 (136)
T 1v5m_A           91 MPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV  129 (136)
T ss_dssp             SCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhc
Confidence            456899999999999999999999999999999998654

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.51  E-value=3.1e-07  Score=78.40  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecCC-----CCCC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGD-----YTKR  120 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~d-----y~KR  120 (344)
                      +.+.|+||+..-.        .....||++|.+|....+.+|+++....    ....|.|..-. +..+.+     ...+
T Consensus         6 s~vlkeGW~VH~t--------~~d~~rKRHYWrLD~K~Itlf~~e~~~~----~ykeIpL~eIl~v~~~~~~~~l~~~~~   73 (125)
T 2coa_A            6 SGTLREGWVVHYS--------NKDTLRKRHYWRLDCKCITLFQNNTTNR----YYKEIPLSEILTVESAQNFSLVPPGTN   73 (125)
T ss_dssp             CSCSEEEEEEECC--------SSSCCCEEEEEEECSSEEEEESSSSCSS----CSEEEETTTCCEEEESCCCSSSCTTSC
T ss_pred             CceeecceEEEEc--------cCCccccceeeEecCCeEEEEecCCCCc----eeeeeehhHeecccccccccccCCCCC
Confidence            4699999997322        2467899999999999999999987643    34557776432 333322     2236


Q ss_pred             cceEEEEeCCCcEEEEECC-----------CHHHHHHHHHHHHHhh
Q psy10626        121 KHVFRLYCTDGSEFLFLAP-----------SETLMEDWVNKISFHA  155 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAe-----------SeeEM~eWI~AIr~aa  155 (344)
                      .|+|+|+|.+ .+|+.+++           ..+.|..|..||+.|.
T Consensus        74 ~hcFEi~T~~-~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL  118 (125)
T 2coa_A           74 PHCFEIVTAN-ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  118 (125)
T ss_dssp             CEEEEEECSS-CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             CceEEEEeCC-eEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence            7999999965 78888874           1367999999999775

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=9.9e-07  Score=75.60  Aligned_cols=96  Identities=13%  Similarity=0.151  Sum_probs=69.6

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecCCC-----CCC
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGDY-----TKR  120 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~dy-----~KR  120 (344)
                      +.|.|+||+..-.        .....||+.|.+|.+..|.+|+++....    ....|.|.+-. +..+.+.     ...
T Consensus         6 s~vlkeGWmVH~t--------~~d~~rKRHYWrLD~K~Itlf~~e~~~k----~ykeIpLseIL~v~~~~~~~~~~~~~~   73 (129)
T 2d9z_A            6 SGMVKEGWMVHYT--------SRDNLRKRHYWRLDSKCLTLFQNESGSK----YYKEIPLSEILRISSPRDFTNISQGSN   73 (129)
T ss_dssp             TTSEEEEEEEEEE--------SSCCCCEEEEEEEESSCEEEESCSSCCS----CCCEECTTTCCEECCTTCCCCSSSCSC
T ss_pred             CceeecceEEEEc--------cCCccccceeeEecCCeEEEEecCCCCc----eeceeeHHHhcccccccCccccCCCCC
Confidence            5699999997332        2467899999999999999999986532    24456665432 2222221     235


Q ss_pred             cceEEEEeCCCcEEEEECCC---------------HHHHHHHHHHHHHhh
Q psy10626        121 KHVFRLYCTDGSEFLFLAPS---------------ETLMEDWVNKISFHA  155 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAeS---------------eeEM~eWI~AIr~aa  155 (344)
                      +|+|+|+|.+ .+|+..++.               .+.+..|..||+.|.
T Consensus        74 phcFEi~T~~-~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL  122 (129)
T 2d9z_A           74 PHCFEIITDT-MVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL  122 (129)
T ss_dssp             CCSEEEECSS-CEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECC-EEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence            6999999965 788887743               689999999999875

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=98.48  E-value=5.3e-07  Score=79.13  Aligned_cols=90  Identities=14%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEeccc-EEEecCCCCCCcceE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKA-RCEKAGDYTKRKHVF  124 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga-~v~ia~dy~KRKnVF  124 (344)
                      ...|.++|+|.++..          -.|++|||+|+..-.+||-|......    .+.|.|..+ .++.     +....|
T Consensus        49 ge~Ilk~G~v~KrkG----------l~~kkR~liLT~~PrL~Yvdp~~~~~----KGeIpls~~l~ve~-----k~~~~F  109 (151)
T 1w1g_A           49 NNLILKMGPVDKRKG----------LFARRRQLLLTEGPHLYYVDPVNKVL----KGEIPWSQELRPEA-----KNFKTF  109 (151)
T ss_dssp             TCCEEEEEEEEEEET----------TEEEEEEEEEETTTEEEEEETTTTEE----EEEECCCTTCEEEE-----SSSSEE
T ss_pred             CCcEEEEEEEEeccc----------CcceeEEEEEcCCceEEEEcCccccc----cceEecCCCeeEEE-----cCCCEE
Confidence            457999999996431          23999999999888888888765322    456777643 3444     223499


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .|.+++ ++|.|.+. ..+.++|+++|+.+..
T Consensus       110 ~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~~~~  139 (151)
T 1w1g_A          110 FVHTPN-RTYYLMDP-SGNAHKWCRKIQEVWR  139 (151)
T ss_dssp             EEEETT-EEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred             EEECCC-ceEEEEcC-ccCHHHHHHHHHHHHH
Confidence            999998 99999997 8889999999997753

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.48  E-value=8.2e-07  Score=82.29  Aligned_cols=98  Identities=19%  Similarity=0.322  Sum_probs=75.5

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeC-----C--eEeEEecCchhhcccCCCccEEeccc-EEEecCCCCC
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-----Q--LLCFFKDQDDFVASKAATSPIIIFKA-RCEKAGDYTK  119 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-----~--~L~fYKDeke~a~~~a~~~~IsL~ga-~v~ia~dy~K  119 (344)
                      .+..||.++.+.          .+.|+.+||||+-     +  .|.+|||..+...+......|.|.+. -++....+++
T Consensus         8 ~~v~eg~vk~r~----------~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk   77 (224)
T 3ml4_A            8 AALVEGQVKLRD----------GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEG   77 (224)
T ss_dssp             CCSEEEEEEEC-------------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETT
T ss_pred             ceeEEEeeeeec----------CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccC
Confidence            477889997553          4699999999983     2  68899999886554444567888864 3444456788


Q ss_pred             CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       120 RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +.|++.|++.+ .+++|..++.++|..|-..|+....
T Consensus        78 ~s~TlAIIc~d-~~~vLAFds~e~l~~W~~~l~~slG  113 (224)
T 3ml4_A           78 LAHTLAIICLS-QAVMLGFDSHEAMCAWDTRIRYALG  113 (224)
T ss_dssp             EEEEEEEEESS-CEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred             cccEEEEEecC-cEEEEEeCCHHHHHHHHHHHhhccC
Confidence            99999999998 5779999999999999999986543

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.86  E-value=4.5e-05  Score=65.27  Aligned_cols=106  Identities=11%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      .++.+...|.+..+..        ..+.=+.||++|=.+.|+|.+-.... ......+.|+|.+-.|....|....+|+|
T Consensus        24 ~lG~ii~~s~v~~~~~--------~~~~~~eR~l~LF~~~Ll~~s~~~~~-~~f~~kgklPL~g~~V~~~ed~~~~~~aF   94 (132)
T 1v61_A           24 TLGNVIFMSQVVMQHG--------ACEEKEERYFLLFSSVLIMLSASPRM-SGFMYQGKIPIAGMVVNRLDEIEGSDCMF   94 (132)
T ss_dssp             TTCCCSCEEEEEBCCS--------SSSCCCEEEEEECSSCEEEEECSSSS-SCCEEEEEECTTTCBCSTTCSSSSSCCCE
T ss_pred             hcCCeEEEeeEEEEEc--------ccCcceEEEEEEcCCeEEEEEecCCC-ceEEEEEEEecceeEEEeccccccCccEE
Confidence            4566666565543321        12233678888888777777643211 11122456778876665444546689999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      +|.-.....++|.|.+.+|++.||.+|+.++...+
T Consensus        95 eI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~~~  129 (132)
T 1v61_A           95 EITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSGP  129 (132)
T ss_dssp             EEECSSSCEEEECCCCSHHHHHHHHHHHHHHTTSC
T ss_pred             EEecCCCceEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence            99988878999999999999999999999887654

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=97.53  E-value=0.00085  Score=55.29  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=63.0

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      -+.++|-|. +-.  ..    ..+.=+++|+.|=++.|.+-+-.............++|.+..+.-..|...-+|+|.|.
T Consensus         7 ~lv~eG~l~-el~--~~----~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~~~~n~f~i~   79 (113)
T 1zc3_B            7 YLVYNGDLV-EYE--AD----HMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLL   79 (113)
T ss_dssp             CEEEEEEEE-EEE--TT----TCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEE
T ss_pred             EEEEeCcEE-EEc--cc----cCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECCCCcccceEEEEE
Confidence            366788775 321  11    11222457888888777766542211000111234666664444334445679999999


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +.. ..|+|+|++.+|..+||.+|+.|.
T Consensus        80 ~~~-~s~~~~aes~~eK~~Wl~~~~~a~  106 (113)
T 1zc3_B           80 MFP-ESRIFQAENAKIKREWLEVLEETK  106 (113)
T ss_dssp             ETT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence            865 689999999999999999999875

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=97.44  E-value=0.00083  Score=63.60  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh-------cccCCCccEEecccEEEecCCCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV-------ASKAATSPIIIFKARCEKAGDYT  118 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a-------~~~a~~~~IsL~ga~v~ia~dy~  118 (344)
                      .....++|.|...            ..++.+|+.|=.+.|.+.|......       ........|.|.+..+.-..+..
T Consensus       244 ~r~li~eG~l~~~------------g~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~  311 (354)
T 1dbh_A          244 CNEFIMEGTLTRV------------GAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN  311 (354)
T ss_dssp             CCCEEEEEEEEET------------TCSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSS
T ss_pred             cceEEEEeeEEEE------------ecCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCccc
Confidence            4557788888642            1578899999999998888653100       00011246778777666544444


Q ss_pred             CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .-+|.|.|...++..|.|+|.|.++.+.|+.+|+.+..
T Consensus       312 ~~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~  349 (354)
T 1dbh_A          312 EYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY  349 (354)
T ss_dssp             SCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ccCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            56899999988778999999999999999999998764

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=97.26  E-value=0.0023  Score=62.26  Aligned_cols=103  Identities=13%  Similarity=0.027  Sum_probs=69.9

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCC------
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYT------  118 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~------  118 (344)
                      ......++|.|.....        ..+.++.+||.|=.+.|.+.|..............|.|.+..+.-..+..      
T Consensus       253 ~~r~Li~~G~l~~~~~--------~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~  324 (402)
T 2dfk_A          253 RSSELIYTGEMAWIYQ--------PYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNV  324 (402)
T ss_dssp             TCCCEEEEEEEEEESS--------TTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCC
T ss_pred             cccceEEeceEEEEec--------cCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCcccccc
Confidence            3456788999874321        12357889999999999998854321111112346777776655332211      


Q ss_pred             CCcceEEEEeCC-CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        119 KRKHVFRLYCTD-GSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       119 KRKnVFrL~tpd-g~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .-+|.|+|...+ ...|+|+|.|+++.+.|+.+|+.+.
T Consensus       325 ~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~  362 (402)
T 2dfk_A          325 SMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREER  362 (402)
T ss_dssp             EESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            236899999875 4689999999999999999998764

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.17  E-value=0.0025  Score=62.67  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=69.6

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCC------C
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYT------K  119 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~------K  119 (344)
                      .....++|.|.....        ....++.+||.|=.+.|.|.|-.............|.|.+..+.-..+..      .
T Consensus       331 ~r~li~~G~l~~~~~--------~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~  402 (466)
T 2pz1_A          331 SSELIYSGELTRVTQ--------PQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVS  402 (466)
T ss_dssp             CSCEEEEEEEEEECT--------TTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCC
T ss_pred             cceeEEeeeEEEEec--------CCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccc
Confidence            345778998874321        12357889999999999988854321111111345777776655332211      3


Q ss_pred             CcceEEEEeCC-CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        120 RKHVFRLYCTD-GSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       120 RKnVFrL~tpd-g~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      -+|.|+|...+ ...|+|+|.|.++.+.|+++|+.+.
T Consensus       403 ~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~  439 (466)
T 2pz1_A          403 IKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFARER  439 (466)
T ss_dssp             BCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            46899999764 4689999999999999999999775

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.09  E-value=0.00045  Score=62.55  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCch
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDD   93 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke   93 (344)
                      .+.++++|||.+|.        ...++|+++||||+++.|.||+....
T Consensus        18 ~~~~~~~g~l~~~~--------~~~~~w~~rw~vl~~~~~~~~~~~~~   57 (228)
T 3tfm_A           18 PGSPYFHSFLYMNG--------GLMNSWKRRWCVLKDETFLWFRSKQE   57 (228)
T ss_dssp             ---CCEEEEEEECC--------TTTCCCEEEEEEEETTEEEEESSCCC
T ss_pred             CCCCceEEEEeecC--------cccccceEEEEEEeCCEEEEeccCCC
Confidence            45689999999663        35789999999999999999997654

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=97.07  E-value=0.0024  Score=62.01  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      ...++|.|.+..          .+.++.+|++|=.+.|.+.|-.....  ......|.|.+..+... +....+|.|.|.
T Consensus       243 ~li~~g~l~~~~----------~~~~~~r~~fLF~d~Ll~~k~~~~~~--y~~k~~i~L~~l~v~~~-~~~~~~~~f~i~  309 (434)
T 3mpx_A          243 EFLKEGTLMKVT----------GKNRRPRHLFLMNDVLLYTYPQKDGK--YRLKNTLAVANMKVSRP-VMEKVPYALKIE  309 (434)
T ss_dssp             CEEECCEEEEEE----------TTEEEEEEEEEESSEEEEEEECTTSC--EEEEEEEEC-----CCC-CCTTSCSEEEEE
T ss_pred             ceEecceEEEEe----------CCCceEEEEEEECCEEEEEEecCCCe--EEEEEEEEcCCcEEEec-CCCCCCeeEEEe
Confidence            457788886322          23478899999999999988543211  11234567766655422 223568999998


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .++ ..|.|+|.|++|.+.|+.+|+.+..
T Consensus       310 ~~~-~~~~l~a~s~~ek~~W~~~i~~ai~  337 (434)
T 3mpx_A          310 TSE-SCLMLSASSCAERDEWYGCLSRALP  337 (434)
T ss_dssp             CSS-CEEEEECSSHHHHHHHHHHHHHC--
T ss_pred             cCC-eEEEEecCCHHHHHHHHHHHHHHHH
Confidence            766 5899999999999999999997764

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=96.98  E-value=0.0031  Score=56.02  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccC---CCccEEecccEEEecCCCCCCcce
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA---ATSPIIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a---~~~~IsL~ga~v~ia~dy~KRKnV  123 (344)
                      ....++|-|..|.         ..+.|+.+|++|=.+.|.|.+-......-..   ....|.|.+..|.-...  ..+..
T Consensus        69 R~Ll~eG~L~~k~---------~~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~--d~~~~  137 (185)
T 2lg1_A           69 KKLVRDGSVFLKN---------AAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH--EEKGL  137 (185)
T ss_dssp             SCEEEEEEEEEEC---------TTCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECCSS--CSSEE
T ss_pred             CceeeeceEEEec---------cCCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEeccCC--CCCeE
Confidence            4578899997553         2346899999999988877753221100000   12457888887764332  22334


Q ss_pred             EEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |-|.+.  +...|-|.|.|.+|.+.||.+|..|..
T Consensus       138 fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~  172 (185)
T 2lg1_A          138 FLISMGMTDPEMVEVHASSKEERNSWIQIIQDTIN  172 (185)
T ss_dssp             EEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            444332  346899999999999999999998863

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=96.95  E-value=0.013  Score=55.59  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchh--------------hcccCCCccEEecccEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF--------------VASKAATSPIIIFKARCE  112 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~--------------a~~~a~~~~IsL~ga~v~  112 (344)
                      ....++|.|..+.         ..+.++.+|+.|=.+.|.+.+...+.              .........|.|.+..+.
T Consensus       251 R~li~~G~l~~~~---------~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~  321 (368)
T 1xcg_A          251 RKMIHEGPLTWRI---------SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIR  321 (368)
T ss_dssp             SCEEEEEEEEECC---------SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEE
T ss_pred             ceEEeecceEeee---------cCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeee
Confidence            4578899997432         13468899999999999888754321              000112356777776654


Q ss_pred             ecCCCCCCcceEEEEeCC----CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        113 KAGDYTKRKHVFRLYCTD----GSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       113 ia~dy~KRKnVFrL~tpd----g~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      -..   ..++.|.|....    ...|.|+|.|.++.+.|+.+|+.|.
T Consensus       322 ~~~---~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai  365 (368)
T 1xcg_A          322 SVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV  365 (368)
T ss_dssp             ECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccc---CCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHH
Confidence            322   224678877643    3689999999999999999999875

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=96.92  E-value=0.0059  Score=58.99  Aligned_cols=99  Identities=17%  Similarity=0.259  Sum_probs=67.9

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC----CCCCc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD----YTKRK  121 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d----y~KRK  121 (344)
                      .+...++|.|.....        ..+.++.+|+.|=.+.|.+.|....   .......|.|....+....+    ..+-+
T Consensus       231 ~grli~~G~l~~~~~--------~~~~~~~~~~fLF~d~Ll~~k~k~~---~y~~k~~i~l~~~~v~~~~~~~~~~~~~~  299 (406)
T 2vrw_B          231 YGRPKIDGELKITSV--------ERRSKTDRYAFLLDKALLICKRRGD---SYDLKASVNLHSFQVRDDSSGERDNKKWS  299 (406)
T ss_dssp             GCSEEEEEEEEEECS--------SCCSCEEEEEEEESSEEEEEEEETT---EEEEEEEEETTTEEEEC--------CTTC
T ss_pred             cCcccccccEEEEec--------CCCccceEEEEecCCEEEEEEecCC---ceEEEEEecccceeeeecCCCCccCCccc
Confidence            355778999874321        1245789999999999988876421   11123456676655543222    12446


Q ss_pred             ceEEEEeC-CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        122 HVFRLYCT-DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       122 nVFrL~tp-dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +.|.|... +...|.|+|.|.+|.+.|+.+|+.+.
T Consensus       300 ~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  334 (406)
T 2vrw_B          300 HMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAI  334 (406)
T ss_dssp             EEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHH
Confidence            99999975 45689999999999999999999876

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=96.91  E-value=0.0049  Score=62.83  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=70.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC----CCCCc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD----YTKRK  121 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d----y~KRK  121 (344)
                      .+...++|.|....        ...+.++.+|++|=.+.|.+.|....   .......|.|.+..+....+    ..+-+
T Consensus       403 ~grll~~G~l~~~~--------~~~~~~~~r~~fLF~d~Ll~~k~~~~---~y~~k~~i~L~~~~v~~~~~~~~~~~~~~  471 (587)
T 3ky9_A          403 YGRPKIDGELKITS--------VERRSKMDRYAFLLDKALLICKRRGD---SYDLKDFVNLHSFQVRDDSSGDRDNKKWS  471 (587)
T ss_dssp             GCCEEEEEEEEEEC--------SSCCSCEEEEEEEETTEEEEEEEETT---EEEEEEEEEGGGEEEEEC-----CCCTTC
T ss_pred             cCceEEEeeEEEEe--------ccCCCcceEEEEEECCEEEEEEecCC---EEEeeeeechhhceeeecCCCCccccccc
Confidence            35578899997432        12356789999999999998875522   11124567777766654322    23457


Q ss_pred             ceEEEEeCCC-cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        122 HVFRLYCTDG-SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       122 nVFrL~tpdg-~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.|.|...++ ..|.|+|.|.+|.+.|+.+|+.+.
T Consensus       472 ~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai  506 (587)
T 3ky9_A          472 HMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAI  506 (587)
T ss_dssp             EEEEEEETTC---CEEEESSHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence            8999998764 789999999999999999999886

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=96.88  E-value=0.0098  Score=57.48  Aligned_cols=98  Identities=14%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh------------c--ccCCCccEEecccEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV------------A--SKAATSPIIIFKARCE  112 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a------------~--~~a~~~~IsL~ga~v~  112 (344)
                      ....++|.|..+.         ....|+.+|++|=.+.|.|.+......            .  .......|.|.+..+.
T Consensus       293 r~li~eG~l~~~~---------~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~  363 (418)
T 3t06_A          293 RKMIHEGPLTWRI---------SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIR  363 (418)
T ss_dssp             SCEEEEEEEEECC---------BTTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEE
T ss_pred             ceeEEeceEEEEe---------CCCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceec
Confidence            4578999997542         134588999999999999987543210            0  0012356778776665


Q ss_pred             ecCCCCCCcceEEEEeCC----CcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        113 KAGDYTKRKHVFRLYCTD----GSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       113 ia~dy~KRKnVFrL~tpd----g~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      -..   .-.+.|.|....    ...|.|+|.|.+|.+.||++|+.+++
T Consensus       364 ~~~---~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~  408 (418)
T 3t06_A          364 SVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  408 (418)
T ss_dssp             ECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccc---ccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            222   224477777643    26999999999999999999998874

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=96.83  E-value=0.0076  Score=61.17  Aligned_cols=98  Identities=15%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--------------CCCccEEecccEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--------------AATSPIIIFKARCE  112 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--------------a~~~~IsL~ga~v~  112 (344)
                      ....++|.|..+.         ....|+.+||+|=.+.|.|.+.....-.-.              .....|.|.+..+.
T Consensus       410 R~LI~eG~l~~~~---------~~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~  480 (536)
T 3odw_A          410 KKLVHEGPLTWRV---------TKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTR  480 (536)
T ss_dssp             SCEEEEEEEEEES---------CC---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEE
T ss_pred             ceeeeecceEEEe---------cCCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceee
Confidence            4578899997553         123688999999999999987543210000              01235788777665


Q ss_pred             ecCCCCCCcceEEEEeC---CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        113 KAGDYTKRKHVFRLYCT---DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       113 ia~dy~KRKnVFrL~tp---dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      -..+  . ...|.|...   +...|.|+|.+.+|.+.||+.|+.|+.
T Consensus       481 e~~~--d-~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~  524 (536)
T 3odw_A          481 EVAT--D-HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAG  524 (536)
T ss_dssp             ECTT--C-TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccc--c-CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4322  1 224444443   557899999999999999999998874

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=96.70  E-value=0.012  Score=50.85  Aligned_cols=86  Identities=12%  Similarity=0.039  Sum_probs=59.5

Q ss_pred             ccCCceEEEEEeCCeEeEEecCchhh--cccCCCccEEecccEEEecCCCCCCcceEEEEeCC-C----cEEEEECCCHH
Q psy10626         70 VRSWKSLYTVLCGQLLCFFKDQDDFV--ASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD-G----SEFLFLAPSET  142 (344)
Q Consensus        70 ~RsWKkrwfVLrG~~L~fYKDeke~a--~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd-g----~eyLFqAeSee  142 (344)
                      .++=++||+.|=++.|.+-|-....+  ........+.|.|-.+....+ ..-+|.|+|.... |    ..++|+|++++
T Consensus        30 ~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~-e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~  108 (140)
T 3qwm_A           30 KLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN-QYYPNGIRLTSSVPGADIKVLINFNAPNPQ  108 (140)
T ss_dssp             CTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC-SSCTTEEEEEECCTTSCCEEEEEEECSSHH
T ss_pred             cccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC-CCCceEEEEEecCCCCcceEEEEEECCCHH
Confidence            34558899999888888776322111  111223456777776654332 2368999999764 4    67999999999


Q ss_pred             HHHHHHHHHHHhhC
Q psy10626        143 LMEDWVNKISFHAQ  156 (344)
Q Consensus       143 EM~eWI~AIr~aaa  156 (344)
                      ||..||.+|+.+++
T Consensus       109 ER~rwi~dL~esI~  122 (140)
T 3qwm_A          109 DRKKFTDDLRESIA  122 (140)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=96.69  E-value=0.011  Score=56.10  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccC--------------CCccEEecccEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA--------------ATSPIIIFKARCE  112 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a--------------~~~~IsL~ga~v~  112 (344)
                      ....++|.|..+.         ..+.|+.+|++|=.+.|.|.+.....-.-..              ....|.|....+.
T Consensus       257 r~li~eG~l~~~~---------~~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~  327 (377)
T 3p6a_A          257 KKLVHEGPLTWRV---------TKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTR  327 (377)
T ss_dssp             SCEEEEEEEEEES---------SSSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEE
T ss_pred             ceEEEECCcEEEe---------cCCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcc
Confidence            4578999997553         2346889999999999999884432100000              1225777776555


Q ss_pred             ecCCCCCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        113 KAGDYTKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       113 ia~dy~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      -..+  .....|.+...  +...|.|+|.|.+|.+.|++.|+.|+.
T Consensus       328 e~~~--~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~  371 (377)
T 3p6a_A          328 EVAT--DHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAG  371 (377)
T ss_dssp             ECTT--CTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccc--ccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence            4222  23345555542  456899999999999999999998874

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.69  E-value=0.0081  Score=64.24  Aligned_cols=101  Identities=17%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE-ecCCCCCCcceEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDYTKRKHVFRL  126 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~dy~KRKnVFrL  126 (344)
                      .|...|||.....   ++   -...=+.+||||+...|.+|||+.+...    .-.+.|.+.... ...+...++|+|.|
T Consensus       539 ~~~~~g~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (772)
T 3zvr_A          539 LVIRKGWLTINNI---GI---MKGGSKEYWFVLTAENLSWYKDDEEKEK----KYMLSVDNLKLRDVEKGFMSSKHIFAL  608 (772)
T ss_dssp             CEEEEEEEEESSS---CC---C---CCEEEEEEESSEEEEESSTTCCCE----EEEEECTTEEEEEC-------CEEEEE
T ss_pred             cceeeeeeeeccc---cc---ccCCCccceeeccccccccccchhhhcc----cccccccccccchhhhccccccccccc
Confidence            3888999985431   11   1224578999999999999999766432    223455443322 33445678899999


Q ss_pred             EeCCCc-------EEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        127 YCTDGS-------EFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       127 ~tpdg~-------eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      -.++++       ..-|.|++++++..|...+-+|--.+
T Consensus       609 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  647 (772)
T 3zvr_A          609 FNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYP  647 (772)
T ss_dssp             EETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred             cCCccccccchhhhhhhhccccccchhhHHhhhhcccCC
Confidence            988664       57799999999999999987665544

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=96.57  E-value=0.018  Score=55.14  Aligned_cols=99  Identities=19%  Similarity=0.232  Sum_probs=66.0

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh------------c--ccCCCccEEecccEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV------------A--SKAATSPIIIFKARCE  112 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a------------~--~~a~~~~IsL~ga~v~  112 (344)
                      ....++|.|..+.         ....++.+|+.|=.+.|.+.+-....-            .  .....+.|.|.+..+.
T Consensus       255 R~li~eG~l~~~~---------~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~  325 (385)
T 1txd_A          255 RKMIHEGPLVWKV---------NRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVR  325 (385)
T ss_dssp             SCEEEEEEEEEES---------SSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEE
T ss_pred             ceEEEECcEEEEc---------CCCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceeccccccc
Confidence            4578899997442         124578999999999998887532210            0  0011346778776655


Q ss_pred             ecCCCCCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        113 KAGDYTKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       113 ia~dy~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      -..+  ..++.|.|...  +...|.|+|.|.++.+.|+.+|+.+..
T Consensus       326 ~~~~--d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~  369 (385)
T 1txd_A          326 QVAT--DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  369 (385)
T ss_dssp             ECCC---CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccc--CCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            3222  23467777653  246899999999999999999997763

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=96.48  E-value=0.022  Score=54.21  Aligned_cols=108  Identities=16%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEeeeeeeccCC----ccccccCCceEEEEEeCCeEeEEecCchhhc------ccCCCccEEecccEEEecC
Q psy10626         46 LPPVEIQGVLERKHELQSGG----KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA------SKAATSPIIIFKARCEKAG  115 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgG----KKs~~RsWKkrwfVLrG~~L~fYKDeke~a~------~~a~~~~IsL~ga~v~ia~  115 (344)
                      .+...++|.|..... ...|    +......++.+|+.|=.+.|.+.|-......      .......|.|....+.-..
T Consensus       207 ~g~ll~~g~l~~~~~-~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~  285 (353)
T 1kz7_A          207 LGKLLMQGSFSVWTD-HKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENV  285 (353)
T ss_dssp             GCCEEEEEEEEEEEC-CCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCB
T ss_pred             hhhhheecceEEEec-CccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcC
Confidence            456788998864221 1111    0111235789999999999998876542110      0011234556554433211


Q ss_pred             CCCCCcceEEEEeCC-CcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        116 DYTKRKHVFRLYCTD-GSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       116 dy~KRKnVFrL~tpd-g~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                        ...++.|.|...+ ...|.|+|.|+++.+.|+.+|+.+..
T Consensus       286 --~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~  325 (353)
T 1kz7_A          286 --KGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLT  325 (353)
T ss_dssp             --TTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             --CCCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence              2246899998754 46899999999999999999997753

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=96.37  E-value=0.02  Score=53.83  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhc-ccC-CCccEEecccEEEecCCCC------
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA-SKA-ATSPIIIFKARCEKAGDYT------  118 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~-~~a-~~~~IsL~ga~v~ia~dy~------  118 (344)
                      ....++|.|.++             ..+.+|+.|=.+.|.+.|....... ... ....|.|.+..+.-..+..      
T Consensus       230 r~li~~G~l~~~-------------~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s  296 (346)
T 2z0q_A          230 RVLCCHGELKNN-------------RGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGS  296 (346)
T ss_dssp             CCEEEEEEEEET-------------TSCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSC
T ss_pred             eEEEEeceeEEC-------------CCcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCcc
Confidence            345678888531             1168899999999998875432110 001 2356888877666443321      


Q ss_pred             ---------CCcceEEEEeC---CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        119 ---------KRKHVFRLYCT---DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       119 ---------KRKnVFrL~tp---dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                               .-+|.|.|...   .+..|.|+|.|.++.+.|+.+|+.|.
T Consensus       297 ~~g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          297 LRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             C--CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence                     23789999864   35799999999999999999999774

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=96.21  E-value=0.037  Score=51.44  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh--cccCCCccEEecccEEEecCCCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV--ASKAATSPIIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a--~~~a~~~~IsL~ga~v~ia~dy~KRKnV  123 (344)
                      .+....+|.+....     |+ ...+..+.+|+.|=.+.|.+.|-.....  ........|.|.+..+.-..  ...++.
T Consensus       200 ~g~li~~~~~~~~~-----~~-~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~--~~~~~~  271 (311)
T 1nty_A          200 QGELILQESFQVWD-----PK-TLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHV--EGDPCK  271 (311)
T ss_dssp             GCCEEEEEEEEEEC-----SS-SSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCC--TTCTTE
T ss_pred             cCCceeeeeEEEEc-----Cc-ccccccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEcc--CCCCce
Confidence            45566777664321     11 1134568999999999999887543211  00011235666665554222  234678


Q ss_pred             EEEEeC----CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        124 FRLYCT----DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       124 FrL~tp----dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.|...    ....|+|+|.|+++.+.|+.+|+.+.
T Consensus       272 F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i  307 (311)
T 1nty_A          272 FALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVI  307 (311)
T ss_dssp             EEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHH
Confidence            999873    34689999999999999999999875

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=96.04  E-value=0.0011  Score=65.37  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             cCCceEEEEEeCCeEeEEecCchhhc--c------------cC-CCccEEecccEEEecCCCCCCcceEEEEeCCCcEEE
Q psy10626         71 RSWKSLYTVLCGQLLCFFKDQDDFVA--S------------KA-ATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFL  135 (344)
Q Consensus        71 RsWKkrwfVLrG~~L~fYKDeke~a~--~------------~a-~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyL  135 (344)
                      +.++.+||+|=.+.|.+.+-.+....  +            .. ....|.|.+..+....+....+++|+|...+ ..|.
T Consensus       263 ~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~-~~~~  341 (510)
T 3jzy_A          263 KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHID-RVYT  341 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCCCccccceeeeccc-eeEE
Confidence            45789999999999998874443200  0            00 1234666666555444444568999999876 5899


Q ss_pred             EECCCHHHHHHHHHHHHHhhC
Q psy10626        136 FLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       136 FqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|.|.++.+.|+.+|+.++.
T Consensus       342 l~a~s~~ek~~W~~~i~~ai~  362 (510)
T 3jzy_A          342 LRTDNINERTAWVQKIKAASE  362 (510)
T ss_dssp             ---------------------
T ss_pred             eccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999997764

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=95.97  E-value=0.02  Score=62.80  Aligned_cols=98  Identities=17%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh-------cccCCCccEEecccEEEecCCCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV-------ASKAATSPIIIFKARCEKAGDYT  118 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a-------~~~a~~~~IsL~ga~v~ia~dy~  118 (344)
                      .....++|.|.+..          .+  +.+|+.|=.+.|.+.|......       ........|.|.+..+.-..+..
T Consensus       441 ~r~Li~eG~l~~~~----------~k--~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~  508 (1049)
T 3ksy_A          441 CNEFIMEGTLTRVG----------AK--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN  508 (1049)
T ss_dssp             CSCCCCEEEEEETT----------CS--SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSS
T ss_pred             cceEEEeceEEEEc----------cC--ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCc
Confidence            34577899986321          11  7899999999999998664211       01123456777766554333444


Q ss_pred             CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .-+|.|.|...++..|+|+|.|.+|.+.||++|+.+.
T Consensus       509 ~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q  545 (1049)
T 3ksy_A          509 EYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ  545 (1049)
T ss_dssp             SCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHH
Confidence            5689999999888899999999999999999997553

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=95.63  E-value=0.0024  Score=56.77  Aligned_cols=53  Identities=9%  Similarity=0.043  Sum_probs=45.1

Q ss_pred             ccccccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        165 SYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       165 s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      .++++...++...|.++++|.+++.++|+..+||||.+|.... +.+.+.|++-
T Consensus         5 ~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~   58 (201)
T 2ovj_A            5 MLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRV   58 (201)
T ss_dssp             CGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTT
T ss_pred             cHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcC
Confidence            3555555566889999999999999999999999999998776 8899999864

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=95.52  E-value=0.076  Score=50.52  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=65.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh-----cccCCCccEEecccEEEecCCCCCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV-----ASKAATSPIIIFKARCEKAGDYTKR  120 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a-----~~~a~~~~IsL~ga~v~ia~dy~KR  120 (344)
                      .+...++|.+..+... . |. ...+.++.+|+.|=.+.|.+.+-.....     ........|.|....+.-..  ...
T Consensus       204 ~~~Ll~~g~~~v~~~~-~-~~-~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~--~~~  278 (354)
T 2rgn_B          204 QGKLLGQDTFWVTEPE-A-GG-LLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNL--QGD  278 (354)
T ss_dssp             SCCEEEEEEEEEECC----------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESG--GGC
T ss_pred             hccccccceEEEEcCC-c-Cc-cccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeecc--CCC
Confidence            4567788876533210 1 11 1134678999999999999987544211     00111235666665554222  123


Q ss_pred             cceEEEEeCC----CcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        121 KHVFRLYCTD----GSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       121 KnVFrL~tpd----g~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++.|.|...+    ...|+|+|.|.++.+.|+.+|+.+..
T Consensus       279 ~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~  318 (354)
T 2rgn_B          279 PCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILE  318 (354)
T ss_dssp             TTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence            5789998632    36899999999999999999997763

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=95.28  E-value=0.0018  Score=58.84  Aligned_cols=73  Identities=12%  Similarity=0.066  Sum_probs=34.7

Q ss_pred             CHHHHHHHHHHHHHhh---CCCCCCcccccccccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccc-c
Q psy10626        140 SETLMEDWVNKISFHA---QLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTS-Y  214 (344)
Q Consensus       140 SeeEM~eWI~AIr~aa---aL~~se~L~s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~-~  214 (344)
                      |++|...|+.++..-.   +.+.+.. ..-+.+.   ...+|.++++|.+++.++|+..+||||.+|.... +.+.+. |
T Consensus         1 ~e~~~~~W~~~m~~~~pvfgvpl~~~-~~~~~~l---~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~   76 (231)
T 1f7c_A            1 SEEDRRLWMEAMDGREPVYNSNKDNQ-SEGTAQL---DSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILM   76 (231)
T ss_dssp             -------------------------------CCS---SHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCccCCcchhc-ccccccc---CCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHh
Confidence            5788999999997422   2221110 0101111   1346889999999999999999999999998765 666554 4


Q ss_pred             cc
Q psy10626        215 EE  216 (344)
Q Consensus       215 ~~  216 (344)
                      +.
T Consensus        77 d~   78 (231)
T 1f7c_A           77 DP   78 (231)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.24  E-value=0.12  Score=54.65  Aligned_cols=96  Identities=13%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      ...+.+.|++.+...       .....|+++++.|..+.|.++-+...      +...+.+.. +..+....-+..++|.
T Consensus       556 ~~~~i~~G~~~k~~g-------~f~~~~~rR~~~l~p~r~e~~~e~~~------~~~l~~~~~-v~~v~k~~i~~~~~l~  621 (689)
T 3v5w_A          556 GKDCIMHGYMSKMGN-------PFLTQWQRRYFYLFPNRLEWRGEGEA------PQSLLTMEE-IQSVEETQIKERKCLL  621 (689)
T ss_dssp             SSCCCEEEEEEEC--------------CEEEEEEEETTEEEEECTTSC------CCEEEEGGG-EEEEEEEESSSCEEEE
T ss_pred             CCcceeecccccCCC-------cccchhhhhccccCCCcccccccCCC------Ccceeeecc-ccccccCcCCCCccee
Confidence            456889999985331       23578999999999888877643221      122333332 1222234456678999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +.+.++..|++++.|+.++.+|...|+.+-
T Consensus       622 ~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~  651 (689)
T 3v5w_A          622 LKIRGGKQFILQCDSDPELVQWKKELRDAY  651 (689)
T ss_dssp             EEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeecCCcEEEEECCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999998553

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=95.05  E-value=0.055  Score=50.73  Aligned_cols=55  Identities=13%  Similarity=0.229  Sum_probs=43.8

Q ss_pred             ccEEecccEEEecC-CCCCCcceEEEEeCCCcE-EEEECCCHHHHHHHHHHHHHhhC
Q psy10626        102 SPIIIFKARCEKAG-DYTKRKHVFRLYCTDGSE-FLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       102 ~~IsL~ga~v~ia~-dy~KRKnVFrL~tpdg~e-yLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ..|.|.-|.+.... .-.++.++|+|..+||.. ++|.|.|..++..|+++|+.++.
T Consensus       206 ~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          206 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             EEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            34667777766433 334589999999999875 89999999999999999997764

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=94.93  E-value=0.22  Score=41.31  Aligned_cols=81  Identities=11%  Similarity=0.135  Sum_probs=51.1

Q ss_pred             ceEEEEEeCCeEe-EEecCchhhcccCCCccEEecccEEE-ecC---C------CCCCcceEEEEeCCC-cEEEEECCCH
Q psy10626         74 KSLYTVLCGQLLC-FFKDQDDFVASKAATSPIIIFKARCE-KAG---D------YTKRKHVFRLYCTDG-SEFLFLAPSE  141 (344)
Q Consensus        74 KkrwfVLrG~~L~-fYKDeke~a~~~a~~~~IsL~ga~v~-ia~---d------y~KRKnVFrL~tpdg-~eyLFqAeSe  141 (344)
                      +.+||+|..+..+ +|.+......  .....|+|..-..- ...   +      ......+|.|...+. ....|.|+|.
T Consensus        29 k~r~f~l~~~~~~~w~~s~~~~~~--~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~  106 (131)
T 1mai_A           29 RERFYKLQEDCKTIWQESRKVMRS--PESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSP  106 (131)
T ss_dssp             EEEEEEECTTSSEEEECCCCTTCC--TTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSH
T ss_pred             eeEEEEECCCCCEEEeCCcCCCCC--CcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeCCH
Confidence            6788888865444 4432211110  12455666543211 111   0      123578999999875 6889999999


Q ss_pred             HHHHHHHHHHHHhhC
Q psy10626        142 TLMEDWVNKISFHAQ  156 (344)
Q Consensus       142 eEM~eWI~AIr~aaa  156 (344)
                      +|.+.||..|+...+
T Consensus       107 ~e~~~Wv~gL~~L~~  121 (131)
T 1mai_A          107 ADAQHWVQGLRKIIH  121 (131)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987664

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=94.31  E-value=0.11  Score=46.67  Aligned_cols=54  Identities=13%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             cEEecccEEEecC-CCCCCcceEEEEeCCCc-EEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        103 PIIIFKARCEKAG-DYTKRKHVFRLYCTDGS-EFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       103 ~IsL~ga~v~ia~-dy~KRKnVFrL~tpdg~-eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .|.|.-|.+.... .-.++.+.|+|..+||. .-+|+|.|..+.+.|+++|+.++.
T Consensus       122 ~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          122 HVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             eecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            4778878777533 33568999999999985 789999999999999999987653

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=93.70  E-value=0.015  Score=52.10  Aligned_cols=43  Identities=12%  Similarity=-0.020  Sum_probs=38.7

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccccccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.++|+..|||||.+|....+.+.+.|++-
T Consensus        23 ~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~~~l~~~~d~~   65 (216)
T 1pbw_A           23 DIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAELRQLLDCD   65 (216)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCTTHHHHHSCSS
T ss_pred             CCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHHHHHHHHHHcC
Confidence            5679999999999999999999999999988778888888764

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=93.51  E-value=0.016  Score=51.10  Aligned_cols=43  Identities=7%  Similarity=0.086  Sum_probs=38.8

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.++|+..|||||.+|.... +.+.+.|++.
T Consensus        24 ~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~   67 (198)
T 1tx4_A           24 EPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG   67 (198)
T ss_dssp             CSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCC
Confidence            368999999999999999999999999998766 8899999874

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=93.27  E-value=0.013  Score=51.77  Aligned_cols=43  Identities=12%  Similarity=0.218  Sum_probs=38.3

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.++|+..|||||.+|.... +.+...|++-
T Consensus        22 ~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~   65 (202)
T 2osa_A           22 TKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRD   65 (202)
T ss_dssp             CSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcC
Confidence            456999999999999999999999999998876 8888889874

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=92.82  E-value=0.022  Score=51.61  Aligned_cols=43  Identities=7%  Similarity=-0.025  Sum_probs=38.3

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.+.|+..+||||.+|.... +.+.+.|+..
T Consensus        34 ~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~   77 (228)
T 3kuq_A           34 QPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGA   77 (228)
T ss_dssp             SSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBS
T ss_pred             CCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcC
Confidence            467999999999999999999999999998776 7888888764

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=92.64  E-value=0.024  Score=50.40  Aligned_cols=44  Identities=14%  Similarity=0.050  Sum_probs=39.0

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++.++|+..+||||.+|.... +.+...|++..
T Consensus        25 ~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~   69 (209)
T 2ee4_A           25 KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDH   69 (209)
T ss_dssp             CCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCT
T ss_pred             CCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCC
Confidence            357999999999999999999999999998876 88888898754

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=92.50  E-value=0.027  Score=51.43  Aligned_cols=43  Identities=7%  Similarity=0.086  Sum_probs=38.8

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ...|.++++|.+++.++|+..|||||.+|.... +.+.+.|++-
T Consensus        60 ~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~  103 (242)
T 1ow3_A           60 EPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG  103 (242)
T ss_dssp             CSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcC
Confidence            367999999999999999999999999999766 8899999874

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=92.40  E-value=0.029  Score=50.02  Aligned_cols=44  Identities=7%  Similarity=-0.050  Sum_probs=38.8

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++.++|+..+||||.+|.... +.+...|++-.
T Consensus        33 ~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~   77 (214)
T 3byi_A           33 STVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEE   77 (214)
T ss_dssp             CSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTC
T ss_pred             CCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCC
Confidence            568999999999999999999999999998776 88888888643

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=92.07  E-value=0.033  Score=50.28  Aligned_cols=44  Identities=7%  Similarity=0.074  Sum_probs=38.3

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS  219 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~  219 (344)
                      ...|.++++|.+++.++|+ .|||||.+|.... +.+.+.|++...
T Consensus        35 ~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~   79 (229)
T 3iug_A           35 FEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHV   79 (229)
T ss_dssp             CSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCC
Confidence            5689999999999999999 6999999998765 889999987543

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=91.93  E-value=0.03  Score=51.25  Aligned_cols=44  Identities=9%  Similarity=0.037  Sum_probs=39.3

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++.+.|+..+||||.+|.... +.+.+.|++-.
T Consensus        66 ~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~  110 (246)
T 3fk2_A           66 KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDH  110 (246)
T ss_dssp             SCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCT
T ss_pred             CCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCC
Confidence            468999999999999999999999999998776 88999998753

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=91.82  E-value=0.028  Score=49.48  Aligned_cols=42  Identities=5%  Similarity=-0.151  Sum_probs=37.9

Q ss_pred             CCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626        176 TGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL  217 (344)
Q Consensus       176 t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~  217 (344)
                      ..|.++.+|.+++.++|+..+||||.+|.... +.+.+.|++-
T Consensus        25 ~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~   67 (201)
T 3msx_B           25 NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSG   67 (201)
T ss_dssp             CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccC
Confidence            47999999999999999999999999998776 8889999874

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=91.34  E-value=0.93  Score=43.00  Aligned_cols=85  Identities=9%  Similarity=0.026  Sum_probs=52.7

Q ss_pred             CCceEEEEEeCCeEeE-EecCchhhc---------------ccCCCccEEecccEEEecCCCCC-CcceEEEEeC-----
Q psy10626         72 SWKSLYTVLCGQLLCF-FKDQDDFVA---------------SKAATSPIIIFKARCEKAGDYTK-RKHVFRLYCT-----  129 (344)
Q Consensus        72 sWKkrwfVLrG~~L~f-YKDeke~a~---------------~~a~~~~IsL~ga~v~ia~dy~K-RKnVFrL~tp-----  129 (344)
                      ..+.+++.|=.+.|.| +|+....+.               ...-...|.|.+..+.-..+... ....|.|..-     
T Consensus       258 k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~  337 (377)
T 1foe_A          258 KEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESE  337 (377)
T ss_dssp             SSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGG
T ss_pred             ccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEecCCCccchhhHHHHHhcccccc
Confidence            4567888888876554 564311000               00112457777766653333222 2346887631     


Q ss_pred             --CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        130 --DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       130 --dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                        ....|.|+|.|.++.+.|+.+|..+.+
T Consensus       338 ~~~~~~~~l~A~s~~eK~~W~~~i~~~i~  366 (377)
T 1foe_A          338 GRPERVFHLCCSSPESRKDFLKSVHSILR  366 (377)
T ss_dssp             GBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence              136899999999999999999997764

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=90.77  E-value=0.069  Score=48.27  Aligned_cols=33  Identities=9%  Similarity=-0.042  Sum_probs=30.2

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCccccc
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLR  208 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~~  208 (344)
                      ...|.++++|.+++.+.|+..|||||.+|.. +|
T Consensus        38 ~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-lr   70 (214)
T 2xs6_A           38 DVAPPLLVKLVEAIERTGLDSESHYRPELPA-PR   70 (214)
T ss_dssp             CCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-CC
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-HH
Confidence            4589999999999999999999999999998 54

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=88.60  E-value=0.079  Score=51.43  Aligned_cols=44  Identities=5%  Similarity=-0.038  Sum_probs=39.3

Q ss_pred             ccCCCcchhhhhcccccccccCCCccccCCCcccc-ccccccccc
Q psy10626        173 SQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEE  216 (344)
Q Consensus       173 s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~  216 (344)
                      .....|.++.+|.+++.++|+..+||||.+|.... +.+.+.|++
T Consensus       195 ~~~~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~  239 (366)
T 3qis_A          195 RPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDT  239 (366)
T ss_dssp             CCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHH
T ss_pred             CCCCcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcC
Confidence            34577999999999999999999999999998866 888899987

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=88.02  E-value=0.086  Score=52.39  Aligned_cols=44  Identities=11%  Similarity=0.201  Sum_probs=39.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++.+.|+..|||||.+|.... +.|.+.|++-+
T Consensus       283 ~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~  327 (463)
T 3cxl_A          283 TKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG  327 (463)
T ss_dssp             CSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHG
T ss_pred             CCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcC
Confidence            568999999999999999999999999998876 88888998743

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=83.12  E-value=5.5  Score=32.92  Aligned_cols=100  Identities=13%  Similarity=0.052  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchh-hcccCCCccEEecccEEEecCCCCCCcc
Q psy10626         44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF-VASKAATSPIIIFKARCEKAGDYTKRKH  122 (344)
Q Consensus        44 d~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~-a~~~a~~~~IsL~ga~v~ia~dy~KRKn  122 (344)
                      .++|...++|++..-.   ..      +.=+.||+.|=...|.|.|-.... .+.......|.+....+....+. ..+.
T Consensus         5 ~~~G~Ll~q~~f~V~~---~~------~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~-~d~~   74 (119)
T 1fho_A            5 GKLGRIIRHDAFQVWE---GD------EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD-EDTI   74 (119)
T ss_dssp             CCCCCSSEEEEEEECS---TT------CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT-CCEE
T ss_pred             HHcCCccccCceEEEe---CC------CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC-CCCc
Confidence            3578889999987432   11      233679999999999999866221 11122334566766555433221 2245


Q ss_pred             eEEEEeCC-CcEEEE--ECCCHH-HHHHHHHHHHH
Q psy10626        123 VFRLYCTD-GSEFLF--LAPSET-LMEDWVNKISF  153 (344)
Q Consensus       123 VFrL~tpd-g~eyLF--qAeSee-EM~eWI~AIr~  153 (344)
                      .|+|...+ ...|++  ||.+.+ .-+.||+.|+.
T Consensus        75 kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~  109 (119)
T 1fho_A           75 VLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAE  109 (119)
T ss_dssp             EEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHT
T ss_pred             EEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHH
Confidence            68887765 357888  999999 99999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	1e-22
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	1e-20
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	1e-19
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	6e-19
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	2e-16
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	9e-10
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	1e-09
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	2e-09
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	1e-08
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	2e-08
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	3e-07
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	5e-07
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	6e-07
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-06
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	1e-05
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	1e-05
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	4e-05
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	9e-05
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	9e-05
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	1e-04
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	8e-04

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 89.6 bits (221), Expect = 1e-22
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAAT----SP 103
               +G + RKHE  S  KKA+ RSW  +Y       + F+KDQ  + ++   T      
Sbjct: 7   GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPS 66

Query: 104 IIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
             +  A  E A DYTK+KHV R+   +G+ FL  A  +T M  WV  +   + 
Sbjct: 67  YDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD 119

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.5 bits (208), Expect = 1e-20
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 32  QSFRKLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQ 91
            S     K+E +D    ++ +G L       +         W+    +L   +       
Sbjct: 5   SSGNLAAKVELVD----IQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRL 60

Query: 92  DDFVASKAATSPIIIFKARCE-----KAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMED 146
           + FV  KA+   + I  +           +  ++ + F L   +G+E++           
Sbjct: 61  EFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHS 120

Query: 147 WVNKISFHAQLPPS 160
           WV  I       PS
Sbjct: 121 WVADIQGCVDSGPS 134

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 51  IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAA--TSPIIIFK 108
           ++G L RKHE ++  KKA+ RSW ++Y V+  Q + F+KD     +        P+ + +
Sbjct: 1   MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60

Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
           A CE A DY K+KHVF+L  +DG+E+LF A  +  M  W+  IS
Sbjct: 61  AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 6e-19
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 2/114 (1%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA--SKAATSPIII 106
            +++G+L RK E+++ GKKAA RSW+++Y VL    L F+KD     A        P+ +
Sbjct: 8   EQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSL 67

Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
            +A+   A DY KRKHVF+L   DG E+LF A  E  M  W+  ++      PS
Sbjct: 68  ARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 2e-16
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 52  QGVLERKHELQSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKA 109
           +G L  +  +   GK+   ++R WK +Y VL G  L  +KD+ +         PI +   
Sbjct: 4   EGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNAC 63

Query: 110 RCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDD- 168
             + +   TKRK+VFRL  T   E LF A     M  W+  I   + L      ++  D 
Sbjct: 64  LIDISYSETKRKNVFRL-TTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDL 122

Query: 169 -SQKVSQY 175
            S+++ +Y
Sbjct: 123 ISRRIKEY 130

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 9e-10
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
           PV I+G L ++         + +R WK  + VL G  L ++KD  +   S   +  +  +
Sbjct: 8   PVHIRGWLHKQ-------DSSGLRLWKRRWFVLSGHCLFYYKDSRE--ESVLGSVLLPSY 58

Query: 108 KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
             R +  G    R+  F         ++  A +   +  W+  +   ++
Sbjct: 59  NIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 107

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-09
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
           QG LE+K    S         W+  + V+   L  ++ ++      K             
Sbjct: 4   QGYLEKK----SKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP-KGTFLIKGYSVRMA 58

Query: 112 EKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
                 +K++  F L   D   + F A S     DWV++ISF
Sbjct: 59  PHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISF 100

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (131), Expect = 2e-09
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 45  QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI 104
            LP V   G LE++              W+  +  L   +  ++    D    K   +  
Sbjct: 100 DLPFVIKAGYLEKR----RKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ-KGEFAID 154

Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
                         K+   F +   D   + F A S    E+WV ++ F
Sbjct: 155 GYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKF 203

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 46  LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPII 105
           LP V   G LE++              W+  +  L   +  ++         K   +   
Sbjct: 6   LPFVIKAGYLEKR----RKDHSFLGFEWQKRWCALSKTVFYYYGSDK-DKQQKGEFAIDG 60

Query: 106 IFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
                        K+   F +   D   + F A S    E+WV ++ F
Sbjct: 61  YDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKF 108

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 66  KKAAVRSWKSLYTVL--CGQLLCFFKDQDDFVASKAAT-SPIIIFKARCEKAGDYTKRKH 122
           +    ++WK    +L      L ++          A      ++        G  ++ ++
Sbjct: 11  QGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEEN 70

Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
           +F +   D   +   A +     +W+  I   ++
Sbjct: 71  LFEIITADEVHYFLQAATPKERTEWIKAIQMASR 104

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
               G L+++           V++W+  Y VL  Q L ++KD++D          +    
Sbjct: 8   PIKMGWLKKQ-----RSI---VKNWQQRYFVLRAQQLYYYKDEEDTKPQG--CMYLPGCT 57

Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSE-------FLFLAPSETLMEDWVNKISFHAQLPPS 160
            +          K VF +      +       ++ +A S+  ME+WV  +   A   PS
Sbjct: 58  IKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 5e-07
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 48  PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
              + G L R         K + + WK L+ V+  ++L  +   +D     AA     + 
Sbjct: 7   GSTMSGYLYRS--------KGSKKPWKHLWFVIKNKVLYTYAASED----VAALESQPLL 54

Query: 108 KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
                   D      VF+L       ++F A      + W++         PS
Sbjct: 55  GFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 46  LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA------ 99
           L  VE+ G + ++  L   G K   ++WK    VL                ++       
Sbjct: 2   LSTVELSGTVVKQGYLAKQGHK--RKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSL 59

Query: 100 -ATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
             +    +             + ++F++   D + +   A S+    +W+  I
Sbjct: 60  RGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 112

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 66  KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
           + A +++WK  Y  L    + +FK + +    +      +     C+++ D   R ++F 
Sbjct: 12  QGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQS-DIMMRDNLFE 70

Query: 126 LYCTDGSEFLFLAPSETLMEDWVNKIS 152
           +  T    F   A S   M  W+  +S
Sbjct: 71  I-VTTSRTFYVQADSPEEMHSWIKAVS 96

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
           +G L ++     GG    V++WK+ +  L    L +FKDQ      +     + + +   
Sbjct: 7   EGYLTKQ-----GGL---VKTWKTRWFTLHRNELKYFKDQMSPEPIRI----LDLTECSA 54

Query: 112 EKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
            +     +R + F         F   A +    ++W+  +
Sbjct: 55  VQFDYSQERVNCFC-LVFPFRTFYLCAKTGVEADEWIKIL 93

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 28/118 (23%)

Query: 66  KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
            +  ++SW  L+ VL   +L  +K Q +          +++      +     K    F+
Sbjct: 16  IRGTLKSWTKLWCVLKPGVLLIYKTQKN----GQWVGTVLLNACEIIERPS-KKDGFCFK 70

Query: 126 LYCTDGSE-----------------------FLFLAPSETLMEDWVNKISFHAQLPPS 160
           L+                              +  A SE+    W++ +    +  PS
Sbjct: 71  LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 24/119 (20%)

Query: 50  EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA------------- 96
           + +G L +      GG+   V++WK  + +L    L +F+   D                
Sbjct: 6   DREGWLLKL-----GGR---VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE 57

Query: 97  ---SKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
               +      +   +   +     K +   R+   +   +   APS    E+W+  I 
Sbjct: 58  VLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 30/129 (23%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
           V ++ +  ++       KK +  ++K    +L    L +++   +     +    I + K
Sbjct: 3   VILESIFLKRS---QQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEK 59

Query: 109 ARC--------------------------EKAGDYTKRKHVFRLYCTDGSEFLFLAPSET 142
             C                          E+     +  + F++   D       +P+E 
Sbjct: 60  ITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVV-YDEGPLYVFSPTEE 118

Query: 143 LMEDWVNKI 151
           L + W++++
Sbjct: 119 LRKRWIHQL 127

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 9e-05
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 12/116 (10%)

Query: 49  VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAAT----SPI 104
              +G+L +K     G      + WK+ + VL                            
Sbjct: 8   RSYEGILYKK-----GAFM---KPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVE 59

Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
            +           T  +  F    T    + F A      + WV++I       PS
Sbjct: 60  AVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 4/102 (3%)

Query: 61  LQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKR 120
           L            K  + VL  + L ++KD ++       +   +  +   +        
Sbjct: 9   LTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHI 68

Query: 121 KHVF----RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP 158
             +F    R    D  +      ++  ++ W          P
Sbjct: 69  FALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYP 110

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 16/109 (14%)

Query: 52  QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
            G L++        +    R ++  +    G  + ++ ++ +        S  II  +  
Sbjct: 4   SGWLDKL-----SPQG--KRMFQKRWVKFDGLSISYYNNEKEM------YSKGIIPLSAI 50

Query: 112 EKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
                   +        T    F+F    E    DW++ +    +    
Sbjct: 51  ST---VRVQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSL 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.88
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.87
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.86
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.85
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.8
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.79
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.78
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.78
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.78
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.76
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.75
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.75
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.73
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.73
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.72
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.71
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.69
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.68
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.67
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.67
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.66
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.66
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.65
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.64
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.64
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.62
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.51
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.94
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.65
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.42
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.21
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.81
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	97.7
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.48
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.46
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.03
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	96.84
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	96.64
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	96.43
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	95.81
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	94.22
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	93.39
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	89.47

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.88  E-value=3.3e-22  Score=156.13  Aligned_cols=104  Identities=39%  Similarity=0.704  Sum_probs=93.0

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc--cCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS--KAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~--~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      +||||.||++....+|+...++|+++||||+++.|+||+++.+....  ......|+|.+|.+..+.++.+++|+|.|.+
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~   80 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeeccccccCcceEeecc
Confidence            58999999999999999989999999999999999999998764432  2345679999999888888889999999999


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      .++.+|+|+|+|++||++||.+|+.|
T Consensus        81 ~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          81 SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            99999999999999999999999865

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-22  Score=163.39  Aligned_cols=108  Identities=31%  Similarity=0.499  Sum_probs=82.3

Q ss_pred             EEEEEEeeeeeeccCCcccc--ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         50 EIQGVLERKHELQSGGKKAA--VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~--~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      .|+|||.+|..+..+||+..  .++|+++||||+++.|+||+++.+......+.+.|+|.+|.|....++.+++|+|.|.
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i~   81 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLT   81 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEEE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEEEEcccccccCceeEEe
Confidence            58999999998888887764  6889999999999999999988765433345678999999999888888999999999


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      +++ .+|+|+|+|++||++||.+|+.++...
T Consensus        82 ~~~-~~~~f~A~s~~e~~~Wi~ai~~a~~~~  111 (133)
T d2j59m1          82 TSD-CECLFQAEDRDDMLAWIKTIQESSNLN  111 (133)
T ss_dssp             CSS-CEEEEECSSHHHHHHHHHHHHHHCCCC
T ss_pred             cCC-CEEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            987 589999999999999999999887644

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.86  E-value=1.3e-21  Score=156.45  Aligned_cols=112  Identities=38%  Similarity=0.573  Sum_probs=96.8

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--CCCccEEecccEEEecCCCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--AATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ..+.++|||.+|++.+..|||...+.|+++||||+++.|+||+++....+..  .....+.+..|.+..+.+..+++|+|
T Consensus         6 ~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   85 (123)
T d1wjma_           6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVF   85 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEE
T ss_pred             CCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEecccccccCcEE
Confidence            3588999999999999999998899999999999999999999876544321  23456788888888888888899999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .|.+.++.+|+|+|+|++||++||++|+.|+.-.
T Consensus        86 ~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~~  119 (123)
T d1wjma_          86 KLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             EEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             EEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999887543

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=2.7e-21  Score=155.09  Aligned_cols=111  Identities=32%  Similarity=0.511  Sum_probs=96.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc----CCCccEEecccEEEecCCCCCCc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK----AATSPIIIFKARCEKAGDYTKRK  121 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~----a~~~~IsL~ga~v~ia~dy~KRK  121 (344)
                      ..+..+||||+||+....++|+...++|+++||||+++.|+||+++.+.....    .....|.+.++.+....+..+++
T Consensus         5 g~~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   84 (122)
T d1droa_           5 GAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKK   84 (122)
T ss_dssp             CSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSST
T ss_pred             CCCcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEecccccccc
Confidence            45678999999999888888888899999999999999999999987765421    23456777788877777888899


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|.|.+.++.+|+|+|++++||++||.+|+.++.
T Consensus        85 ~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          85 HVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             TEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.1e-19  Score=141.29  Aligned_cols=101  Identities=18%  Similarity=0.315  Sum_probs=85.9

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      ..+.++|||+++.        ...+.|+++||||+++.|+||+++....    ....|.|.++.+....+..+++|+|.|
T Consensus         6 ~~~~~~G~L~k~~--------~~~~~W~kr~~vL~~~~L~~~k~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~F~i   73 (109)
T d1wgqa_           6 SGSTMSGYLYRSK--------GSKKPWKHLWFVIKNKVLYTYAASEDVA----ALESQPLLGFTVTLVKDENSESKVFQL   73 (109)
T ss_dssp             CSCSCEEEEEEES--------STTSCCEEEEEEEETTEEEEESCTTCSS----CSEEEECSSEEEEECCCSSCSSSEEEE
T ss_pred             CCCcEEEEEEEEC--------CCCCCceEEEEEEeCCEEEEeccccccc----cccccccceeeeeecccccccceeeee
Confidence            4688999998653        2347899999999999999999987543    356789999887777777889999999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      .+.++..|+|+|++++||++||.+|+.|+...+
T Consensus        74 ~~~~~~~~~f~a~s~~~~~~Wi~ai~~a~~~~p  106 (109)
T d1wgqa_          74 LHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGP  106 (109)
T ss_dssp             EETTEEEEEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred             ecccceEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence            999889999999999999999999999986443

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.4e-19  Score=149.72  Aligned_cols=108  Identities=15%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC------eEeEEecCchhhcccCCCccEEecccE---EEecC
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ------LLCFFKDQDDFVASKAATSPIIIFKAR---CEKAG  115 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~------~L~fYKDeke~a~~~a~~~~IsL~ga~---v~ia~  115 (344)
                      +...|.|+|||.+|......+++...++|++|||||+++      .|+||+++....+    .+.|.|....   +....
T Consensus        14 ~~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~----~g~i~l~~~~~~~~~~~~   89 (136)
T d1v5ma_          14 ELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP----KVSIPLSAIIEVRTTMPL   89 (136)
T ss_dssp             CSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC----SSCEETTTCCBCCCCCCS
T ss_pred             ccceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCcccccCc----Ccceecccceeeeeeccc
Confidence            466799999999887766666667789999999999975      4778988876543    5566665422   22334


Q ss_pred             CCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        116 DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       116 dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +..+++|+|.|.+.++..|+|+|+|++||++||.+|+.+..
T Consensus        90 ~~~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~  130 (136)
T d1v5ma_          90 EMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             SSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            56788999999999999999999999999999999998864

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.1e-19  Score=138.41  Aligned_cols=95  Identities=18%  Similarity=0.279  Sum_probs=78.7

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      ...|+|||.++.        ...+.|+++||||+++.|+||+++.+..    +.+.|+|.+|.+....+..+++|+|+|.
T Consensus         3 ~~~KeG~L~K~~--------~~~k~Wk~R~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~~v~~~~~~~~~~~F~i~   70 (100)
T d1faoa_           3 LGTKEGYLTKQG--------GLVKTWKTRWFTLHRNELKYFKDQMSPE----PIRILDLTECSAVQFDYSQERVNCFCLV   70 (100)
T ss_dssp             TTCEEEEEEEEC--------SSSCCEEEEEEEEETTEEEEESSTTCSS----CSEEEEGGGCCEEEEECSSSSSSEEEEE
T ss_pred             CccEEEEEEEeC--------CCCCCceEEEEEEECCEEEEEeccCCcc----CceEEechheEEEEeccccccccccccc
Confidence            367999998653        1357899999999999999999887643    4788999987654444446789999999


Q ss_pred             eCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        128 CTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       128 tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +++ ++|+|+|+|++||++||.+|+.+.
T Consensus        71 ~~~-r~~~l~a~s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          71 FPF-RTFYLCAKTGVEADEWIKILRWKL   97 (100)
T ss_dssp             ETT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCC-eEEEEEeCCHHHHHHHHHHHHHHH
Confidence            986 799999999999999999999765

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-18  Score=134.78  Aligned_cols=100  Identities=19%  Similarity=0.381  Sum_probs=83.1

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec--CCCCCCcce
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA--GDYTKRKHV  123 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia--~dy~KRKnV  123 (344)
                      ..++.++|||.++..       ...+.|+++||||+++.|++|+++....    +...|.|.++.+...  ....+++|+
T Consensus         6 ~~~~~~~G~L~k~~~-------~~~k~W~kr~~vL~~~~L~~y~~~~~~~----~~~~i~l~~~~v~~~~~~~~~~~~~~   74 (107)
T d1upqa_           6 NLPVHIRGWLHKQDS-------SGLRLWKRRWFVLSGHCLFYYKDSREES----VLGSVLLPSYNIRPDGPGAPRGRRFT   74 (107)
T ss_dssp             TSCEEEEEEEEEECS-------SSSCCEEEEEEEEETTEEEEESSTTCCS----CCEEEEGGGCEEEECCSSCTTSSSSE
T ss_pred             CCceeEEEEEEEeCC-------CCCCCeeEEEEEEECCEEEEecCccccc----ccceecccceEEEEeccCcccCcceE
Confidence            457899999986531       2357899999999999999999887543    367889998877643  355778899


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.|.+.++..|+|+|+|++|+++||.+|+.|+.
T Consensus        75 ~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A~~  107 (107)
T d1upqa_          75 FTAEHPGMRTYVLAADTLEDLRGWLRALGRASR  107 (107)
T ss_dssp             EEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999998863

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.4e-18  Score=136.58  Aligned_cols=102  Identities=20%  Similarity=0.325  Sum_probs=83.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC---CCCCCcc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRKH  122 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRKn  122 (344)
                      ++.|.++|||.++.    .++....+.|+++||||+++.|+||+++....    +.+.|.|.++.+....   +..+++|
T Consensus         6 ~~~v~k~G~L~k~~----~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~----p~g~i~L~~~~~~~~~~~~~~~~~~~   77 (111)
T d1u5fa1           6 LPFVIKAGYLEKRR----KDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ----QKGEFAIDGYDVRMNNTLRKDGKKDC   77 (111)
T ss_dssp             CSSEEEEEEEEEEC----CCSSCSSCSEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEECTTSCSSTTGGG
T ss_pred             CCCeeEEEEEEEEC----CCCCCCcCCceEEEEEEECCEEEeeccccccC----cceEEEecccEEEeeccccccccccc
Confidence            45799999999664    12233467999999999999999999886643    4678999987765432   3466889


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +|.|.+.++.+|+|+|+|++||++|+++|+.+.
T Consensus        78 ~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          78 CFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             EEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             eEEEEccCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999764

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-18  Score=138.69  Aligned_cols=101  Identities=16%  Similarity=0.249  Sum_probs=81.1

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEe-cCCCCCCcceEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEK-AGDYTKRKHVFRL  126 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~i-a~dy~KRKnVFrL  126 (344)
                      -|.|+|||.++..      ......|+++||||+++.|+||+|+.+..    +.+.|.|.++.+.. ..+...++|+|+|
T Consensus         2 ~vik~GwL~k~~~------~~~~~~WkkRwFvL~~~~L~yyk~~~~~~----~~~~i~l~~~~v~~~~~~~~~~~~~F~l   71 (111)
T d2dyna_           2 LVIRKGWLTINNI------GIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKGFMSSKHIFAL   71 (111)
T ss_dssp             CEEEEEEEEETTC------CTTTTSSEEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEECCCSTTCSEEEEE
T ss_pred             eEEEEeeEEEECC------CCCcCCceEEEEEEECCEEEEEcchhhcc----cccccccccceeEeeccccccccccEEe
Confidence            3899999985421      12356799999999999999999986543    36788998876654 3456789999999


Q ss_pred             EeCC-------CcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        127 YCTD-------GSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       127 ~tpd-------g~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      .++.       ++.|+|+|++++||.+|+.+|..|+..|
T Consensus        72 ~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~~~p  110 (111)
T d2dyna_          72 FNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYP  110 (111)
T ss_dssp             EESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred             eeccccccccCceeEEEECCCHHHHHHHHHHHHHhccCC
Confidence            9864       3689999999999999999999988765

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.5e-18  Score=138.31  Aligned_cols=99  Identities=17%  Similarity=0.294  Sum_probs=79.2

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL  126 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL  126 (344)
                      ..|.++|||.++         ...++|++|||||+++.|+||+++....    +.+.|.|.++.+.... ..+++++|+|
T Consensus         6 ~~~~~~GwLkk~---------~~~k~WkkRwfvL~~~~L~yyk~~~~~~----~~g~i~L~~~~v~~~~-~~~~~~~f~i   71 (130)
T d1v88a_           6 SGIVMADWLKIR---------GTLKSWTKLWCVLKPGVLLIYKTQKNGQ----WVGTVLLNACEIIERP-SKKDGFCFKL   71 (130)
T ss_dssp             SSCCEEEEEEEC---------CSSSSCEEEEEEEETTEEEEESCSSSCC----CCEEEECSSCEECCCC-TTTSSCEEEE
T ss_pred             CCCeEeCeEEeC---------CCCCCceEEEEEEeCCEEEEEcCCCCCc----ceeEEECCCeEEEEcc-ccCCCceEEE
Confidence            469999999532         2468899999999999999999987643    4788999988765433 3677899999


Q ss_pred             EeCCCc-----------------------EEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        127 YCTDGS-----------------------EFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       127 ~tpdg~-----------------------eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      .++++.                       .|+|+|++++||++||.+|+.++...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~~p  127 (130)
T d1v88a_          72 FHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP  127 (130)
T ss_dssp             ECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred             EcCCCcceecccCcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhhcCC
Confidence            775432                       278999999999999999999886543

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.5e-18  Score=132.95  Aligned_cols=99  Identities=24%  Similarity=0.391  Sum_probs=80.7

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC---CCCCCcceEE
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRKHVFR  125 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRKnVFr  125 (344)
                      |.|+|||.++..    +.....++|+++||||+++.|+||+++....    +.+.|.|.++.+....   +..+++|+|.
T Consensus         1 vik~G~L~k~~~----~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~f~   72 (106)
T d1u5da1           1 VIKQGYLEKKSK----DHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ----PKGTFLIKGYSVRMAPHLRRDSKKESCFE   72 (106)
T ss_dssp             EEEEEEEEEEEE----CSSSSCEEEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEECGGGCSSGGGGGEEE
T ss_pred             CeEEEEEEEECC----CCCCCcCCcEEEEEEEECCEEEEEecccccc----cccccccCCceEeeccccccccCCceeEE
Confidence            689999986542    1122357899999999999999999887643    4678999988766543   3466789999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.+.++..|+|+|++++|+++||.+|+.+.
T Consensus        73 i~~~~~~~~~f~a~s~~e~~~W~~ai~~~i  102 (106)
T d1u5da1          73 LTSQDRRTYEFTATSPAEARDWVDQISFLL  102 (106)
T ss_dssp             EECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence            999998999999999999999999999875

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.6e-18  Score=133.78  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=79.8

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC-CCCCCcceEEEEe
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG-DYTKRKHVFRLYC  128 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~-dy~KRKnVFrL~t  128 (344)
                      .|+|||+++..        ..+.|++|||||+++.|+||+++....    +.+.|.|.+|.+.... +..+++|+|+|.+
T Consensus         2 iK~G~L~k~~~--------~~k~W~kR~fvL~~~~L~yy~~~~~~~----~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~   69 (101)
T d2fjla1           2 IKNGILYLEDP--------VNHEWYPHYFVLTSSKIYYSEETSSDL----LRGVLDVPACQIAIRPEGKNNRLFVFSISM   69 (101)
T ss_dssp             CEEEEEEEEET--------TTTEEEEEEEEEETTEEEECCCCSCTC----CCEEECSTTCEEEEETTCSSSCSCEEEEEC
T ss_pred             ceEEEEEEEcC--------CCCCCeEEEEEEECCEEEEEeccccce----ecceEEcCCceeEeeeeecccccceeEEec
Confidence            58999997642        357899999999999999999876543    3678899988877554 5677899999998


Q ss_pred             CC--CcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        129 TD--GSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       129 pd--g~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      +.  +..|+|+|+|++||++||.+|+.|+..
T Consensus        70 ~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~~  100 (101)
T d2fjla1          70 PSVAQWSLDVAADSQEELQDWVKKIREVAQT  100 (101)
T ss_dssp             TTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             cccccEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            64  468999999999999999999998863

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=131.98  Aligned_cols=97  Identities=23%  Similarity=0.366  Sum_probs=82.0

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec-CCCCCCcceEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA-GDYTKRKHVFRL  126 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia-~dy~KRKnVFrL  126 (344)
                      .+.|+|||.++.        ...++|+++||||.++.|++|+++....    +.+.|+|.++.+... .+...++++|.|
T Consensus         4 ~~ikeG~L~k~~--------~~~k~WkkryfvL~~~~L~~y~~~~~~~----p~~~i~l~~~~~~~~~~~~~~~~~~f~l   71 (113)
T d1plsa_           4 KRIREGYLVKKG--------SVFNTWKPMWVVLLEDGIEFYKKKSDNS----PKGMIPLKGSTLTSPCQDFGKRMFVFKI   71 (113)
T ss_dssp             CCSEEEEEEEES--------SSSSCCEEEEEEEETTEEEEESSTTCSS----CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred             CceEEEEEEEeC--------CCCCCceEEEEEEECCEEEEEecCCccc----cceEEECccCeEEeeecccCCcceEEEE
Confidence            589999998653        2367899999999999999999887643    367899998866544 355778999999


Q ss_pred             EeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .+.++..|+|+|+|++|+++||.+|+.|+.
T Consensus        72 ~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~  101 (113)
T d1plsa_          72 TTTKQQDHFFQAAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             EETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998863

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=9e-18  Score=146.05  Aligned_cols=102  Identities=20%  Similarity=0.319  Sum_probs=83.7

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC---CCCCCcc
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRKH  122 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRKn  122 (344)
                      ...+.++|||.+|...    .....+.|++|||||+++.|+||+++....    +.+.|+|.++.+..+.   ...+++|
T Consensus       101 ~~~~~k~G~L~K~~~~----~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~----~~~~i~L~~~~~~~~~~~~~~~~~~~  172 (209)
T d1u5ea1         101 LPFVIKAGYLEKRRKD----HSFLGFEWQKRWCALSKTVFYYYGSDKDKQ----QKGEFAIDGYDVRMNNTLRKDGKKDC  172 (209)
T ss_dssp             CSSEEEEEEEEEEEHH----HHTTTCCCEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred             cCCeeEEEEEEEecCC----CCCccccceEEEEEEECCEEEEEecCCCCc----cceEEEecceeeeeccccccccCCCc
Confidence            4568899999876421    112367899999999999999999987654    4788999988766443   2367889


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +|.|.+++++.|+|+|+|++||++||.+|+.+.
T Consensus       173 ~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~i  205 (209)
T d1u5ea1         173 CFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  205 (209)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.9e-18  Score=141.16  Aligned_cols=105  Identities=24%  Similarity=0.297  Sum_probs=81.2

Q ss_pred             CCCCeEEEEEEeeeeeeccCCc-cccccCCceEEEEEeCC-----eEeEEecCchhhcccCCCccEEecccEEEecCCCC
Q psy10626         45 QLPPVEIQGVLERKHELQSGGK-KAAVRSWKSLYTVLCGQ-----LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYT  118 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGK-Ks~~RsWKkrwfVLrG~-----~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~  118 (344)
                      +.+.|.|+|||.++..   .++ ....+.|++|||||+++     .|+||+++....   .+.+.|.|.+|.+... ...
T Consensus        14 ~~~~v~k~G~L~K~~~---~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~---~~~g~i~l~~~~~~~~-~~~   86 (150)
T d1wg7a_          14 QKGGITKHGWLYKGNM---NSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK---EPKGSIFLDSCMGVVQ-NNK   86 (150)
T ss_dssp             CSCCCCCEEEEEECCC---CSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSS---CCSEEECTTTCCEECC-CCS
T ss_pred             CCCCEeEEEEEEEecC---CCCcccccccceEEEEEEEcCcCCceeEEEEecccccc---cccccccccccccccc-Ccc
Confidence            3457999999986531   111 12358999999999854     588888876532   2467888988865443 446


Q ss_pred             CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +++|+|.|.+.+++.|+|+|++++||++||.+|+.++.
T Consensus        87 ~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~  124 (150)
T d1wg7a_          87 VRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             SCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            78899999999989999999999999999999998764

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=138.03  Aligned_cols=101  Identities=21%  Similarity=0.318  Sum_probs=82.1

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEe-cCCCCCCcce
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEK-AGDYTKRKHV  123 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~i-a~dy~KRKnV  123 (344)
                      ..-+++++|||.++.        ...+.|+++||||+|+.|+||++..+..    +.+.|+|.++.+.. ..+..+++|+
T Consensus         7 ~~~~~~~eG~L~k~~--------~~~k~WkkrwfvL~~~~L~yY~~~~d~~----~~~~i~L~~~~~~~~~~~~~~~~~~   74 (136)
T d1x1fa1           7 TALPLYFEGFLLIKR--------SGYREYEHYWTELRGTTLFFYTDKKSII----YVDKLDIVDLTCLTEQNSTEKNCAK   74 (136)
T ss_dssp             SSSCEEEEEEEEEEC--------TTCCSCEEEEEEEETTEEEEESCSSCSS----CSEECCCSSCCEEEECCCTTSCCCE
T ss_pred             CCCCccEEEEEEEEC--------CCCCCeEEEEEEEcCCEeEEEeeccccc----ccccccccceeeeeeecccccccce
Confidence            346899999998543        2467899999999999999999887643    36778888775543 3455677899


Q ss_pred             EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                      |.|.+++ ..|+|+|+|++||++||.+|+.++++.
T Consensus        75 F~i~~~~-~~~~f~Aes~~e~~~Wi~~I~~v~~~~  108 (136)
T d1x1fa1          75 FTLVLPK-EEVQLKTENTESGEEWRGFILTVTELS  108 (136)
T ss_dssp             EEEECSS-CCEEEECSSHHHHHHHHHHHHHHHHSS
T ss_pred             eeecCCC-ceEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            9999987 579999999999999999999888644

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-17  Score=129.24  Aligned_cols=101  Identities=23%  Similarity=0.379  Sum_probs=80.8

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcceE
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHVF  124 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnVF  124 (344)
                      ..+.|+|||+++.        ...+.|++|||||+++.|+||+++....    +...++|.++.+....  ...+.+|+|
T Consensus         6 s~~~k~G~L~K~~--------~~~k~WkkR~fvL~~~~l~y~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~f   73 (118)
T d1v89a_           6 SGPIKMGWLKKQR--------SIVKNWQQRYFVLRAQQLYYYKDEEDTK----PQGCMYLPGCTIKEIATNPEEAGKFVF   73 (118)
T ss_dssp             SCEEEEEEEEEEC--------SSSSCEEEEEEEEETTEEEEESSSSCCS----CSEEECSTTEEEEEECCCSSCCCCCEE
T ss_pred             CCCeEEEEEEEEC--------CCCCCcEEEEEEEECCEEEEecccCccc----ccceeccCceEEEEeccccccCCCcEE
Confidence            4689999998543        2357899999999999999999886543    3667888887776433  346678999


Q ss_pred             EEEeCCC-------cEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626        125 RLYCTDG-------SEFLFLAPSETLMEDWVNKISFHAQLPP  159 (344)
Q Consensus       125 rL~tpdg-------~eyLFqAeSeeEM~eWI~AIr~aaaL~~  159 (344)
                      +|.+.+.       ..|+|+|++++|+++||.+|+.|+.-.+
T Consensus        74 ~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~p  115 (118)
T d1v89a_          74 EIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGP  115 (118)
T ss_dssp             EEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCS
T ss_pred             EEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence            9998754       4699999999999999999999875443

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.2e-18  Score=130.51  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD  130 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd  130 (344)
                      +.|||.++.          .+.|++|||||+++.|+||+++.....   +.+.|.|.++.+.... ..+++|+|.+.+.+
T Consensus         3 ~s~yl~~~~----------~~~WkkR~fvL~~~~L~yyk~~~~~~~---~~~~i~l~~~~v~~~~-~~~~~~~f~~~~~~   68 (95)
T d2cofa1           3 TSSYLNVLV----------NSQWKSRWCSVRDNHLHFYQDRNRSKV---AQQPLSLVGCEVVPDP-SPDHLYSFRILHKG   68 (95)
T ss_dssp             TCCEEEEEE----------TTEEEEEEEEECSSCEEEECSSTTCSE---EEEEECTTTCEEECCC-BTTBSCEEEEEETT
T ss_pred             cccchhhhc----------CCCceEEEEEEECCEEEEEeccccccc---ccccccccceEEEecc-cccceecceecccc
Confidence            578997542          467999999999999999998765432   3567888888775533 36788999999999


Q ss_pred             CcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        131 GSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       131 g~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ++.|+|+|+|++||++||.+|+.+++
T Consensus        69 ~~~~~l~A~s~~e~~~Wi~~L~~~tg   94 (95)
T d2cofa1          69 EELAKLEAKSSEEMGHWLGLLLSESG   94 (95)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             ceeEEeeCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998764

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.4e-17  Score=124.95  Aligned_cols=93  Identities=23%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC-------eEeEEecCchhhcc-cCCCccEEecccEEEecCCCCC
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-------LLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTK  119 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~-------~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~K  119 (344)
                      +|.|+|||. |           .++|+++||||++.       .|++|+++...... ..+.+.|+|.+|......+..+
T Consensus         1 dv~k~GyL~-K-----------~k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~   68 (103)
T d1qqga1           1 DVRKVGYLR-K-----------PKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSK   68 (103)
T ss_dssp             CEEEEEEEE-C-----------TTTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSS
T ss_pred             CcceeEEEE-E-----------cCCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCC
Confidence            489999997 3           25799999999874       59999987654322 2345678888886555556677


Q ss_pred             CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626        120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF  153 (344)
Q Consensus       120 RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~  153 (344)
                      ++|+|+|.+++ +.|+|+|+|++||++||.+|+.
T Consensus        69 ~~~~f~i~t~~-r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          69 NKHLVALYTRD-EHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             CSSEEEEEESS-CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCC-eEEEEEcCCHHHHHHHHHHHHh
Confidence            88999999987 7899999999999999999985

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.4e-17  Score=123.44  Aligned_cols=96  Identities=13%  Similarity=0.274  Sum_probs=71.6

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEe--EEecCchhhcccCCCccEEecccEEEecC-----CCCCCc
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC--FFKDQDDFVASKAATSPIIIFKARCEKAG-----DYTKRK  121 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~--fYKDeke~a~~~a~~~~IsL~ga~v~ia~-----dy~KRK  121 (344)
                      |.|+|||.++.        ...++|+++||||+++.|+  +|+++.+.    .+.+.|.+.++.+..+.     ....+.
T Consensus         2 v~k~G~L~k~~--------~~~k~WkkR~fvL~~~~~~l~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~   69 (104)
T d2i5fa1           2 IIKQGCLLKQG--------HRRKNWKVRKFILREDPAYLHYYDPAGAE----DPLGAIHLRGCVVTSVESNSNGRKSEEE   69 (104)
T ss_dssp             EEEEEEEEEEC--------TTTCCEEEEEEEEETTTTEEEEECTTSCS----SCSEEEECTTCEEEEECC--------CC
T ss_pred             EEEEEEEEEEC--------CCCCCcEEEEEEEECCeeEEEEEcCcccc----CccceEeecceEEEEeccCcccccccCc
Confidence            78999998653        1357899999999986443  33433332    23567888887665432     235678


Q ss_pred             ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |+|.|.++++..|+|+|+|++||++||++|+.|+.
T Consensus        70 ~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a~r  104 (104)
T d2i5fa1          70 NLFEIITADEVHYFLQAATPKERTEWIKAIQMASR  104 (104)
T ss_dssp             SEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999998863

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.6e-17  Score=123.51  Aligned_cols=96  Identities=21%  Similarity=0.292  Sum_probs=76.9

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC---CCCCCcceE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRKHVF  124 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRKnVF  124 (344)
                      .|.|+|||.++.        ...+.|+++||||+++.|+||+++....    +.+.|+|.++.+....   +..+..++|
T Consensus         2 ~vik~G~L~K~~--------~~~~~Wkkr~fvL~~~~l~yy~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~f   69 (103)
T d1eaza_           2 AVIKAGYCVKQG--------AVMKNWKRRYFQLDENTIGYFKSELEKE----PLRVIPLKEVHKVQECKQSDIMMRDNLF   69 (103)
T ss_dssp             CCSEEEEEEEEC--------TTTCCEEEEEEEECSSEEEEESSTTCSS----CSEEEEGGGCCEEEECTTHHHHTCSSEE
T ss_pred             ceEEEEEEEEEC--------CCCCCeeEEEEEEECCEEEEEecccCcc----cceEEEccceEEeeccccccccccceEE
Confidence            588999998553        2357899999999999999999886532    3678888876544322   236778999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .|.+++ ..|+|+|+|++|+++||.+|+.|+.
T Consensus        70 ~i~~~~-~~~~~~a~s~~e~~~W~~aI~~ai~  100 (103)
T d1eaza_          70 EIVTTS-RTFYVQADSPEEMHSWIKAVSGAIV  100 (103)
T ss_dssp             EEECSS-CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCC-EEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            999875 7999999999999999999998753

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.9e-17  Score=123.78  Aligned_cols=91  Identities=16%  Similarity=0.292  Sum_probs=73.2

Q ss_pred             EEEEEeeeeeeccCCccccccCCceEEEEEeCC---eEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcceEE
Q psy10626         51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ---LLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHVFR  125 (344)
Q Consensus        51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~---~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnVFr  125 (344)
                      +.|||.++.         ..+.|+++||||+++   .|++|+++.+..    +.+.|.|.++.+....  ...+++|+|+
T Consensus         3 ~~G~L~~~~---------~~k~W~krwfvL~~~~~~~ly~~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~F~   69 (99)
T d2coca1           3 LCGPLRLSE---------SGETWSEVWAAIPMSDPQVLHLQGGSQDGR----LPRTIPLPSCKLSVPDPEERLDSGHVWK   69 (99)
T ss_dssp             SEEEEEEES---------SSSCEEEEEEECCTTCTTCEEEECCTTCSS----SCSEECGGGCEEECCCSSSCCSSSEEEE
T ss_pred             eEEEEEccC---------CCCCccEEEEEEecCCccEEEEECcCcccc----ccccccccceeeeecccccccCCceEEE
Confidence            579998543         246899999999976   588888776543    3678899888765433  3467899999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      |.+++ ++|+|+|+|++||++||.+|+.|+
T Consensus        70 i~~~~-r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          70 LQWAK-QSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             EEETT-EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEcCC-cEEEEECCCHHHHHHHHHHHHHhc
Confidence            99875 799999999999999999999886

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=124.37  Aligned_cols=91  Identities=13%  Similarity=0.291  Sum_probs=74.2

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeC
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT  129 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tp  129 (344)
                      .|+|||.++..       ...+.|+++||||+++.|++|+++.+..    +.+.|+|.++.+...    .+.|+|.|.++
T Consensus         2 ik~G~L~K~~~-------~~~~~W~kr~fvL~~~~L~~~~~~~~~~----~~~~i~L~~~~~~~~----~~~~~f~i~~~   66 (102)
T d2coda1           2 VKSGWLDKLSP-------QGKRMFQKRWVKFDGLSISYYNNEKEMY----SKGIIPLSAISTVRV----QGDNKFEVVTT   66 (102)
T ss_dssp             CEEEEEEECCS-------SSSSCCEEEEEEECSSEEEEEESSCCSS----CCCEEETTTEEEEEE----ETTTEEEEEES
T ss_pred             cEEEEEEEECC-------CCCCCceEEEEEEECCEEEEEeccCcce----eEEEEEchhceeecc----ccceeEEEEcC
Confidence            58999985531       2368899999999999999999987643    467899987654432    45789999997


Q ss_pred             CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        130 DGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       130 dg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      + +.|+|+|+|++||++||.+|+.+.+
T Consensus        67 ~-~~~~l~a~s~~e~~~Wi~ai~~~i~   92 (102)
T d2coda1          67 Q-RTFVFRVEKEEERNDWISILLNALK   92 (102)
T ss_dssp             S-CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             C-cEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            6 7899999999999999999998764

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-17  Score=128.71  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY  127 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~  127 (344)
                      .+.|+|||.++..   .|  ...+.|+++||||+++.|+||++....     +...|.|.+|.+.... ..++.|+|+|.
T Consensus         4 ~~~k~G~L~k~~~---~g--~~~k~W~kRwfvL~~~~L~y~~~~~~~-----~~~~i~l~~~~v~~~~-~~~~~~~f~i~   72 (101)
T d2elba2           4 LTRKAGYLNARNK---TG--LVSSTWDRQFYFTQGGNLMSQARGDVA-----GGLAMDIDNCSVMAVD-CEDRRYCFQIT   72 (101)
T ss_dssp             CSCCEEEEEECSC---CC------CCCEEEEEEETTEEEEECTTCCC-----E----EEEECCCCCCC-CCCSSSSSEEC
T ss_pred             CccEeEEEEEecc---CC--CCccccEEEEEEEeCCEEEEEccCCcc-----cceEEEeccccccccc-ccCCcceEEEE
Confidence            4679999986531   11  235789999999999999999865432     2567888888765543 36788999999


Q ss_pred             eCCC-cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        128 CTDG-SEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       128 tpdg-~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      +.++ +.|+|+|+|++|+++||.||+.++
T Consensus        73 ~~~~~~~~~l~A~s~~e~~~Wi~al~~vs  101 (101)
T d2elba2          73 SFDGKKSSILQAESKKDHEEWICTINNIS  101 (101)
T ss_dssp             CCSSSCCCCEECSSHHHHHHHHHHHHHTC
T ss_pred             eecccceEEEECCCHHHHHHHHHHHHhcC
Confidence            8876 589999999999999999999764

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.6e-16  Score=124.97  Aligned_cols=94  Identities=21%  Similarity=0.364  Sum_probs=75.3

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe-
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC-  128 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t-  128 (344)
                      .|+|||.++.        ...++|++|||||+++.|+||+++.+..    +.+.|+|.++.+....+ .+++++|++.. 
T Consensus         6 ~keG~L~K~~--------~~~k~WkrR~fvL~~~~L~yy~~~~~~~----~~g~i~L~~~~v~~~~~-~~~~~~~~~~~~   72 (127)
T d1fgya_           6 DREGWLLKLG--------GRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENLSIREVLD-PRKPNCFELYNP   72 (127)
T ss_dssp             SEEEEEEEEC--------SSSCCEEEEEEEEETTEEEEESSTTCSS----CSEEEECTTCEEEEECC-SSCSSEEEEECS
T ss_pred             ceEEEEEEEC--------CCCCCcEEEEEEEECCEEEEEccCCCcc----ccceEeCCCeEEEEccC-CCCCceEEEecc
Confidence            7899998553        2367899999999999999999886543    47789999987765444 45678887754 


Q ss_pred             --------------------CCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        129 --------------------TDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       129 --------------------pdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                                          .+...|+|+|++++|+++||.+|+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~  120 (127)
T d1fgya_          73 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             SSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHc
Confidence                                2457899999999999999999998764

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=135.17  Aligned_cols=107  Identities=13%  Similarity=0.247  Sum_probs=79.9

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE-ecCC----------
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGD----------  116 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~d----------  116 (344)
                      .|+++|||.++..   +-++....+|++|||||+++.|+||+++.+........+.|.|.+..+. ...+          
T Consensus         2 ~vi~eG~L~Kr~~---~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~   78 (169)
T d1btka_           2 AVILESIFLKRSQ---QKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQI   78 (169)
T ss_dssp             CCCEEEEEEEECC---CSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC
T ss_pred             cEEEEEEEEEecC---CCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCccccc
Confidence            5899999986542   1123456789999999999999999987654322224567888765432 2111          


Q ss_pred             ---------------CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626        117 ---------------YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP  158 (344)
Q Consensus       117 ---------------y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~  158 (344)
                                     ..++.++|+|.+++ ++|+|+|+|++||++||++|+.++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~F~I~t~~-rt~~l~A~s~eE~~~WI~aL~~~i~~~  134 (169)
T d1btka_          79 PRRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIRYN  134 (169)
T ss_dssp             ---------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCcceEEEeCC-cEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence                           13567999999987 689999999999999999999998744

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-16  Score=124.86  Aligned_cols=101  Identities=13%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEe--EEecCchhhcccCCCccEEecccEEEecC--CC-CCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC--FFKDQDDFVASKAATSPIIIFKARCEKAG--DY-TKR  120 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~--fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy-~KR  120 (344)
                      ...+.++|||+++.       +...+.|++|||||+++.|+  +|.++.+.  ...+.+.|.|.++.+....  +. .++
T Consensus         5 ~~~~~~~G~L~K~g-------~~~~k~WkkRwfvL~~~~~~~yy~~~~~~~--~~~~~~~i~l~~~~~~~~~~~~~~~~~   75 (126)
T d1wi1a_           5 SSGMKHSGYLWAIG-------KNVWKRWKKRFFVLVQVSQYTFAMCSYREK--KAEPQELLQLDGYTVDYTDPQPGLEGG   75 (126)
T ss_dssp             CCCEEEEEEEEEEC-------SSSCCSCEEEEEEEEEEETTEEEEEECCSS--SSCCSEEEECSSCEEEECCCCSSCCSC
T ss_pred             CCCCcEEEEEEEEC-------CCCCCCceEEEEEEeCCceEEEEEcccccc--cccceeeeeeceeeeeecccccccccc
Confidence            34689999998653       12357899999999865433  33333322  1234677888877765432  22 334


Q ss_pred             cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .+.|.|. .+++.|+|+|+|++||++||++|+.|+.
T Consensus        76 ~~~~~i~-~~~r~~~f~A~s~~e~~~Wv~al~~a~~  110 (126)
T d1wi1a_          76 RAFFNAV-KEGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             SSEEEEE-CSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ceeEEec-cCCeEEEEEECCHHHHHHHHHHHHHHHH
Confidence            4445554 5568999999999999999999998875

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=123.51  Aligned_cols=100  Identities=15%  Similarity=0.212  Sum_probs=74.2

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEe-EEecCchhhcccCCCccEEecccEEEecC--------C
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC-FFKDQDDFVASKAATSPIIIFKARCEKAG--------D  116 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~-fYKDeke~a~~~a~~~~IsL~ga~v~ia~--------d  116 (344)
                      .+.|.|+|||.++.        ...+.|+++||||++..++ +|.+....  ...+.+.|+|.++.+....        .
T Consensus         8 ~~~v~k~G~L~K~~--------~~~k~WkkR~fvL~~~~~~~~~~~~~~~--~~~p~~~i~L~~~~i~~~~~~~~~~~~~   77 (116)
T d1x1ga1           8 SGTVVKQGYLAKQG--------HKRKNWKVRRFVLRKDPAFLHYYDPSKE--ENRPVGGFSLRGSLVSALEDNGVPTGVK   77 (116)
T ss_dssp             CSEEEEEEEEEEEC--------SSSSSEEEEEEEEEESSCEEEEECSSSC--CSSCSCCEESTTCCCEECCSSSSCSSCS
T ss_pred             CCCEEEEEEEEEEc--------CCCCCCceEEEEEECCCcEEEEeccccc--cccceeEEEcCCCEEEEecccCcccccc
Confidence            35799999998653        2357899999999876543 33332221  1235678999887655332        1


Q ss_pred             CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       117 y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ...+.++|.|.+.+++.|+|+|++++||++||+||+.+.
T Consensus        78 ~~~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~t  116 (116)
T d1x1ga1          78 GNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT  116 (116)
T ss_dssp             SCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             cccccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhhC
Confidence            245678999999999999999999999999999999763

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-16  Score=126.25  Aligned_cols=92  Identities=13%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecCC-----CCCCcce
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGD-----YTKRKHV  123 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~d-----y~KRKnV  123 (344)
                      .|+|||.++.        ...+.|+++||||+++.|+||+++.+..    +.+.|.|.++. +..+.+     ...++|+
T Consensus         2 lk~GwL~k~~--------~~~~~wkkRwFvL~~~~L~YYk~~~~~~----p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~   69 (112)
T d2coaa1           2 LREGWVVHYS--------NKDTLRKRHYWRLDCKCITLFQNNTTNR----YYKEIPLSEILTVESAQNFSLVPPGTNPHC   69 (112)
T ss_dssp             SEEEEEEECC--------SSSCCCEEEEEEECSSEEEEESSSSCSS----CSEEEETTTCCEEEESCCCSSSCTTSCCEE
T ss_pred             ceEEEEEEEC--------CCCCCeeEEEEEEEcceEEEEeccCCCc----cceEEeeeccccccccccccccccCCCccE
Confidence            4899998543        2468899999999999999999988653    47889998644 334333     2457899


Q ss_pred             EEEEeCCCcEEEEEC-----------CCHHHHHHHHHHHHHh
Q psy10626        124 FRLYCTDGSEFLFLA-----------PSETLMEDWVNKISFH  154 (344)
Q Consensus       124 FrL~tpdg~eyLFqA-----------eSeeEM~eWI~AIr~a  154 (344)
                      |+|.+++ ++|+|.|           ++++++++||++|+.|
T Consensus        70 F~I~T~~-rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A  110 (112)
T d2coaa1          70 FEIVTAN-ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  110 (112)
T ss_dssp             EEEECSS-CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             EEEEeCC-eEEEEecCCccccccccccChHHHHHHHHHHHHh
Confidence            9999988 6777744           7889999999999976

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=5e-16  Score=124.40  Aligned_cols=97  Identities=12%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      ...+.++|||.++..       ...+.|+++||||.++.|+||+++...      .+.|.|.++. .+......++++|.
T Consensus         7 ~~~~i~eG~L~K~g~-------~~~~~WkkR~fvL~~~~L~yy~~~~~~------~~~i~l~~~~-~v~~~~~~~~~~f~   72 (119)
T d1omwa2           7 GKDCIMHGYMSKMGN-------PFLTQWQRRYFYLFPNRLEWRGEGEAP------QSLLTMEEIQ-SVEETQIKERKCLL   72 (119)
T ss_dssp             TSCCCEEEEEEECC-------------CEEEEEEEETTEEEEECTTSCC------CEEEEGGGEE-EEEEEESSSCEEEE
T ss_pred             CCCeEEEEEEEEECC-------CCCCCeEEEEEEEEcCeEEEEeccccc------Cccceecccc-ccccccccccceEE
Confidence            346899999985431       134679999999999999999877642      4567776442 22222356778999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.+.++..|+|+|+|++||++||.+|+.|..
T Consensus        73 i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~  103 (119)
T d1omwa2          73 LKIRGGKQFVLQCDSDPELVQWKKELRDAYR  103 (119)
T ss_dssp             EEETTSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999989999999999999999999997754

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=124.26  Aligned_cols=97  Identities=16%  Similarity=0.274  Sum_probs=69.7

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeC-CeEeEEecCchhhcccCCCccEEecccEE---EecCCCCCCcce
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-QLLCFFKDQDDFVASKAATSPIIIFKARC---EKAGDYTKRKHV  123 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-~~L~fYKDeke~a~~~a~~~~IsL~ga~v---~ia~dy~KRKnV  123 (344)
                      .|.++|||.++.        ...+.|++|||||++ +.|+||+++....+    .+.|.|..+.+   ....+..+++|+
T Consensus         6 ~v~k~G~L~K~~--------~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~   73 (118)
T d1unqa_           6 AIVKEGWLHKRG--------EYIKTWRPRYFLLKNDGTFIGYKERPQDVD----QREAPLNNFSVAQCQLMKTERPRPNT   73 (118)
T ss_dssp             CEEEEEEEEEEC--------SSSCCEEEEEEEEETTSEEEEESSCCCSHH----HHTSCSEEEECTTCEEEEECSSSTTE
T ss_pred             CEEEEEEEEEEC--------CCCCCcEEEEEEEeccceeEEEeeccCccc----cccccccceEEeecccccccccCCce
Confidence            599999998653        135789999999986 57888887765433    22333332221   122233567899


Q ss_pred             EEEEeCCCc---EEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        124 FRLYCTDGS---EFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       124 FrL~tpdg~---eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.|.+.++.   .|+|+|+|++|+++||.+|+.++.
T Consensus        74 f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~  109 (118)
T d1unqa_          74 FIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD  109 (118)
T ss_dssp             EEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            999986553   699999999999999999998763

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.1e-15  Score=118.35  Aligned_cols=98  Identities=19%  Similarity=0.290  Sum_probs=74.1

Q ss_pred             CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeC--CeEeEEecCchhhcccCCCccEEecccEEEec-CCC------
Q psy10626         47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG--QLLCFFKDQDDFVASKAATSPIIIFKARCEKA-GDY------  117 (344)
Q Consensus        47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG--~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia-~dy------  117 (344)
                      ..+.++|||.++.        ...+.|+++||||++  +.|++|+++.+..    +.+.|.|.++.+... .+.      
T Consensus         6 s~~~~eG~L~k~~--------~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~----p~g~i~l~~~~~v~~~~~~~~~~~~   73 (117)
T d1v5ua_           6 SGRSYEGILYKKG--------AFMKPWKARWFVLDKTKHQLRYYDHRMDTE----CKGVIDLAEVEAVAPGTPTIGAPKT   73 (117)
T ss_dssp             CSSSEEEEEEECC--------CSSSCCEEEEEEEETTTTEEEEESSSSCSS----CCCEEEGGGEEEEECCCCCTTSCSS
T ss_pred             CCCeEEEEEEEEC--------CCCCCceEEEEEEeCCCCEEEecccccccC----cceEEEecceEEEeecccccccccc
Confidence            4689999998653        236789999999974  6899999887643    367899987654432 211      


Q ss_pred             CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      ..+.++|.+.+++ +.|+|+|+|++|+++||.+|+.|+..
T Consensus        74 ~~~~~~~~~~~~~-~~~~~~a~s~~e~~~Wv~~l~~ai~~  112 (117)
T d1v5ua_          74 VDEKAFFDVKTTR-RVYNFCAQDVPSAQQWVDRIQSCLSS  112 (117)
T ss_dssp             SCTTTCEEEEESS-CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred             cccceEEEeeCCC-cEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            2345778777764 89999999999999999999977653

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.4e-14  Score=115.90  Aligned_cols=101  Identities=16%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcc-cCCCccEEecccE-EEecC--CCCCCcc
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVAS-KAATSPIIIFKAR-CEKAG--DYTKRKH  122 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~-~a~~~~IsL~ga~-v~ia~--dy~KRKn  122 (344)
                      ..++|||.++..       ...+.|++|||||.  ++.|+||+++.+..+. ......|.|..+. +..+.  ...+..+
T Consensus        15 ~~~~GyL~k~~~-------~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~   87 (126)
T d1v5pa_          15 NRICGFLDIEDN-------ENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPF   87 (126)
T ss_dssp             CCEECCEEEECT-------TCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSS
T ss_pred             CceeeeEEEECC-------CCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccc
Confidence            457899985431       24688999999995  7899999988765431 1123345554433 22222  2245568


Q ss_pred             eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626        123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL  157 (344)
Q Consensus       123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL  157 (344)
                      +|.+.+++ +.|+|+|+|++|+++||++|+.|+..
T Consensus        88 ~~~~~~~~-r~~~l~Aes~~e~~~Wi~aL~~A~~~  121 (126)
T d1v5pa_          88 CFVINALS-QRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             EEEEECSS-CEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             eEEEcCCC-eeEEEECCCHHHHHHHHHHHHHHhcc
Confidence            88887765 89999999999999999999998754

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=123.60  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=71.8

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR  125 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr  125 (344)
                      ..-|.|+|||.++.          ...|++|||||+++.|+||+|+.....    .+.|.|..+....    .+.+++|.
T Consensus        45 g~~ilK~G~L~Kr~----------~~~wkkR~FvL~~~~L~YYkd~~~~~~----kG~I~L~~~~~v~----~~~~~~F~  106 (147)
T d1w1ha_          45 NNLILKMGPVDKRK----------GLFARRRQLLLTEGPHLYYVDPVNKVL----KGEIPWSQELRPE----AKNFKTFF  106 (147)
T ss_dssp             TCCEEEEEEEEECC----------TTSCEEEEEEEETTTEEEEEETTTTEE----EEEECCCTTCEEE----EEETTEEE
T ss_pred             CCeEEEEEEEEeec----------CCcceEEEEEEcCCeeEEEeCCCcccc----cceEEeccccccc----cccCceEE
Confidence            45699999998542          246999999999999999999876432    5788887665332    25578999


Q ss_pred             EEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        126 LYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      |.+++ ++|+|+|++ .||++||.+|+.+.+
T Consensus       107 I~t~~-Rty~l~a~~-~d~~~Wv~aI~~v~~  135 (147)
T d1w1ha_         107 VHTPN-RTYYLMDPS-GNAHKWCRKIQEVWR  135 (147)
T ss_dssp             EECSS-CEEEEECTT-SCHHHHHHHHHHHHH
T ss_pred             EecCc-eEEEEEcCh-HHHHHHHHHHHHHHH
Confidence            99987 799999976 589999999987753

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=9.1e-10  Score=90.22  Aligned_cols=103  Identities=11%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF  124 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF  124 (344)
                      ..+.+.++|+|..+.        ...+.|+.|||+|-.+.|+|+|...... .......|.|.++.+....+....+|.|
T Consensus        24 ~~G~li~~g~~~~~~--------~~~~~~k~R~~fLF~~~Ll~~k~~~~~~-~~~~k~~i~l~~~~v~~~~~~~~~~~~f   94 (132)
T d1v61a_          24 TLGNVIFMSQVVMQH--------GACEEKEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLDEIEGSDCMF   94 (132)
T ss_dssp             TTCCCSCEEEEEBCC--------SSSSCCCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTCSSSSSCCCE
T ss_pred             hccCEEEEEEEEEEE--------ecCCCcceEEEEEeCCEEEEEEEcCCCc-eeEEeeecchhhccccccccccCccceE
Confidence            567899999997433        2346899999999999999998543211 1111345667776655444445678999


Q ss_pred             EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      .|..+....|+|+|.+++|+++||++|+.+..
T Consensus        95 ~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_          95 EITGSTVERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             EEECSSSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            99988778999999999999999999998763

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.1e-07  Score=79.58  Aligned_cols=104  Identities=13%  Similarity=0.028  Sum_probs=72.6

Q ss_pred             CCCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC------
Q psy10626         44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY------  117 (344)
Q Consensus        44 d~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy------  117 (344)
                      +......++|+|.+..        .....|+.+||+|-.+.|++++-.............|.|..+.+....+.      
T Consensus        22 ~~~r~Li~eG~L~~~~--------~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~   93 (162)
T d2dfka2          22 DRSSELIYTGEMAWIY--------QPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFN   93 (162)
T ss_dssp             GTCCCEEEEEEEEEES--------STTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSC
T ss_pred             ccCceEEEEEEEEEEE--------cCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccC
Confidence            3456788999997532        12457999999999999999975433221111234567777665533221      


Q ss_pred             CCCcceEEEEeC-CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        118 TKRKHVFRLYCT-DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       118 ~KRKnVFrL~tp-dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ..-+|+|.|... ....|+|+|.+++|...||++|+.+.
T Consensus        94 ~~~~~~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~  132 (162)
T d2dfka2          94 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREER  132 (162)
T ss_dssp             CEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            224689999865 34689999999999999999998653

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=9.9e-07  Score=68.77  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC  128 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t  128 (344)
                      ..++|-|....   .+    ..+.=+.+|+.|=.+.|.+.+-.............+.|.++.+.-..+....+|+|.|..
T Consensus         4 li~eG~l~~~~---~~----~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~~~~n~f~i~~   76 (109)
T d1zc3b1           4 LVYNGDLVEYE---AD----HMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLM   76 (109)
T ss_dssp             EEEEEEEEEEE---TT----TCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEE
T ss_pred             EEEeeeEEEEc---cC----CCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeecccccceEEEEcc
Confidence            57889886321   11    122235689999999998887433221111223567888877765555567789999998


Q ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        129 TDGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       129 pdg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ++ ..|+|+|+|++|...||.+|+.|.
T Consensus        77 ~~-~~~~~~a~s~~eK~~W~~~l~~a~  102 (109)
T d1zc3b1          77 FP-ESRIFQAENAKIKREWLEVLEETK  102 (109)
T ss_dssp             TT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEEECCHHHHHHHHHHHHHHH
Confidence            87 689999999999999999999875

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.8e-06  Score=65.33  Aligned_cols=97  Identities=18%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc-------CCCccEEecccEEEecCCCC
Q psy10626         46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK-------AATSPIIIFKARCEKAGDYT  118 (344)
Q Consensus        46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~-------a~~~~IsL~ga~v~ia~dy~  118 (344)
                      .....++|.|.+..      ++      +.+|+.|=.+.|++.|-........       .-...|.|..+.+.-..+..
T Consensus        24 gr~li~eG~l~~~~------~~------k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~   91 (133)
T d1dbha2          24 CNEFIMEGTLTRVG------AK------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN   91 (133)
T ss_dssp             CCCEEEEEEEEETT------CS------SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSS
T ss_pred             CcEEEEEeEEEEec------CC------CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCCCc
Confidence            34588999997421      11      5799999999999998543321100       01245788888876555556


Q ss_pred             CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626        119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      ..+|.|.|...+...|+|+|+|++|...||++|..+
T Consensus        92 ~~~~~f~i~~~~~~~~~l~a~s~~eK~~W~~~l~~~  127 (133)
T d1dbha2          92 EYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISL  127 (133)
T ss_dssp             SCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccceeEEcCCCcEEEEEECCHHHHHHHHHHHHHH
Confidence            678999999887788999999999999999999754

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=9.5e-05  Score=58.14  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc--cCCCccEEecccEEEecCCCCCCcc
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS--KAATSPIIIFKARCEKAGDYTKRKH  122 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~--~a~~~~IsL~ga~v~ia~dy~KRKn  122 (344)
                      +.|...++|.|....     + +...+.++.||+.|=.+.|.+.|-.......  ......+.+.+..+.  .......+
T Consensus         9 ~~G~Ll~~g~l~v~~-----~-~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   80 (121)
T d1ntya2           9 SQGELILQESFQVWD-----P-KTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVT--EHVEGDPC   80 (121)
T ss_dssp             GGCCEEEEEEEEEEC-----S-SSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEE--CCCTTCTT
T ss_pred             hCCcEEEEeEEEEEc-----c-cccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEE--EcCCCCCc
Confidence            467789999986321     1 1234567999999999999998754322110  011123444444332  22234567


Q ss_pred             eEEEEeC----CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        123 VFRLYCT----DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       123 VFrL~tp----dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .|.|...    ....|+|+|.|+++...||++|+.+.
T Consensus        81 ~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i  117 (121)
T d1ntya2          81 KFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVI  117 (121)
T ss_dssp             EEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            8988642    33579999999999999999998765

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=0.00022  Score=55.88  Aligned_cols=82  Identities=13%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             cCC-ceEEEEEeC-CeEeEEecCchhhcccCCCccEEecccE-EEecC---------CCCCCcceEEEEeCCC-cEEEEE
Q psy10626         71 RSW-KSLYTVLCG-QLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAG---------DYTKRKHVFRLYCTDG-SEFLFL  137 (344)
Q Consensus        71 RsW-KkrwfVLrG-~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~---------dy~KRKnVFrL~tpdg-~eyLFq  137 (344)
                      ++| +.+||+|.. ..+++|++......  .....|+|.... |....         ......++|.|...++ +++.|.
T Consensus        23 ~~~~k~R~f~L~~d~~~i~~~~~~~~~~--~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l~  100 (119)
T d1maia_          23 SSWRRERFYKLQEDCKTIWQESRKVMRS--PESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLI  100 (119)
T ss_dssp             SSCEEEEEEEECTTSSEEEECCCCTTCC--TTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEE
T ss_pred             CCCCEEEEEEEcCCCCEEEEeCCCCCCC--ccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEEE
Confidence            446 669999975 45566765543221  124567776532 21111         1123357899986543 689999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy10626        138 APSETLMEDWVNKISFH  154 (344)
Q Consensus       138 AeSeeEM~eWI~AIr~a  154 (344)
                      |+|+++++.||.+|+..
T Consensus       101 a~s~~~~~~Wv~~L~~L  117 (119)
T d1maia_         101 APSPADAQHWVQGLRKI  117 (119)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHH
Confidence            99999999999999864

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00014  Score=58.69  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=65.2

Q ss_pred             eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-------------cCCCccEEecccEEEecC
Q psy10626         49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-------------KAATSPIIIFKARCEKAG  115 (344)
Q Consensus        49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-------------~a~~~~IsL~ga~v~ia~  115 (344)
                      ..++|.|.++.    .    .    +.+|+.|=.+.|.|-|-.......             ......|.|.+..+....
T Consensus        25 li~eG~L~k~~----~----~----k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~   92 (142)
T d1ki1b2          25 FLHSGKLYKAK----N----N----KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPT   92 (142)
T ss_dssp             EEEECCCBCSS----S----C----CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCS
T ss_pred             EEEeeEEEEec----C----C----CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccC
Confidence            67899996321    1    1    478999999999988754331110             011345788887776555


Q ss_pred             CCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        116 DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       116 dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      +...-.++|.+...+ ..|+|+|+|++|...||++|+.|+.
T Consensus        93 d~~~~~~~~~~~~~~-~~~~l~a~s~~ek~~W~~~I~~Ai~  132 (142)
T d1ki1b2          93 DPSGDEPIFHISHID-RVYTLRAESINERTAWVQKIKAASE  132 (142)
T ss_dssp             SSCCC---CEEEETT-EEEECBCSSHHHHHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCC-EEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            555667889888765 7899999999999999999998864

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0014  Score=52.43  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--------------CCCccEEecccEEEe
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--------------AATSPIIIFKARCEK  113 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--------------a~~~~IsL~ga~v~i  113 (344)
                      ...++|.|..|.         ..+..+.+|+.|=.+.|.+.|-........              .....+.+....+.-
T Consensus        24 ~Li~eG~L~~k~---------~~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (140)
T d1xcga2          24 KMIHEGPLTWRI---------SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRS   94 (140)
T ss_dssp             CEEEEEEEEECC---------SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEE
T ss_pred             eEEEEeeEEEEe---------cCCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEEEec
Confidence            477899997543         235677999999999999987654311000              012234444433332


Q ss_pred             cCCCCCCcceEEEEeC----CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        114 AGDYTKRKHVFRLYCT----DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       114 a~dy~KRKnVFrL~tp----dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      .   ...++.|.|...    ....|.|+|+|++|-..||.+|+.|+
T Consensus        95 ~---~~~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI  137 (140)
T d1xcga2          95 V---ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV  137 (140)
T ss_dssp             C---SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             C---CCCCCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHH
Confidence            2   233567887653    34679999999999999999999875

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.03  E-value=0.0033  Score=49.08  Aligned_cols=96  Identities=21%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc--------------cCCCccEEecccEEEecC
Q psy10626         50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS--------------KAATSPIIIFKARCEKAG  115 (344)
Q Consensus        50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~--------------~a~~~~IsL~ga~v~ia~  115 (344)
                      ..+|-|..|.   .      ...=+.+|+.|=.+.|.|.|.......-              ......|.|....+.-..
T Consensus         2 i~eG~L~~~~---~------~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~   72 (114)
T d1txda2           2 IHEGPLVWKV---N------RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVA   72 (114)
T ss_dssp             EEEEEEEEES---S------SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECC
T ss_pred             ceeeeEEEEe---c------CCCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcC
Confidence            4689886442   1      1122589999999988888754431100              011234666665554322


Q ss_pred             CCCCCcceEEEEeCCC--cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        116 DYTKRKHVFRLYCTDG--SEFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       116 dy~KRKnVFrL~tpdg--~eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                        ...++.|.|.+.+.  ..|.|+|.++++-+.||++|+.+++
T Consensus        73 --~d~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          73 --TDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             --C-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence              23356888887643  4799999999999999999998764

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.011  Score=48.04  Aligned_cols=109  Identities=14%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCCCeEEEEEEeeeeeecc-CC--ccccccCCceEEEEEeCCeEeEEecCchhhcccCCCc------cEEecccEEEecC
Q psy10626         45 QLPPVEIQGVLERKHELQS-GG--KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS------PIIIFKARCEKAG  115 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~les-gG--KKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~------~IsL~ga~v~ia~  115 (344)
                      +.|...++|.|..-..-.. .+  ++...+.=+.|||.|=.+.|+|.|.............      .+.+....  +..
T Consensus         9 ~~G~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~--v~~   86 (147)
T d1kz7a2           9 DLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVG--ITE   86 (147)
T ss_dssp             GGCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEE--EEC
T ss_pred             HcCCEEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCce--eEe
Confidence            4678899999963211000 00  1111233378999999999999985443211111112      22333322  222


Q ss_pred             CCCCCcceEEEEeC-CCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626        116 DYTKRKHVFRLYCT-DGSEFLFLAPSETLMEDWVNKISFHA  155 (344)
Q Consensus       116 dy~KRKnVFrL~tp-dg~eyLFqAeSeeEM~eWI~AIr~aa  155 (344)
                      ......+.|.|... ....|+|+|.++++.+.||++|+.+.
T Consensus        87 ~~~~~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l  127 (147)
T d1kz7a2          87 NVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVL  127 (147)
T ss_dssp             CBTTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence            22344567777653 33689999999999999999999764

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.024  Score=44.89  Aligned_cols=98  Identities=15%  Similarity=0.235  Sum_probs=71.1

Q ss_pred             CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC-CCCCcceEEE
Q psy10626         48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD-YTKRKHVFRL  126 (344)
Q Consensus        48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d-y~KRKnVFrL  126 (344)
                      ...+.|+|+-..   .+|.-+....|.+..+-|.+..|.+---.        ....|+|.-|.+..... ...-...|+|
T Consensus         5 ra~rsGlLE~~~---~~~~~~~~~rW~rVl~~L~ed~Lt~s~~~--------d~k~IPLKmcyvtR~~~~~D~EnR~lEl   73 (105)
T d2adza1           5 RAPRTGLLELRC---GAGSGAGGERWQRVLLSLAEDALTVSPLS--------EAKHVSLKMAYVSRRCTPTDPEPRYLEI   73 (105)
T ss_dssp             CCCEEEEEEECC---CCSSSSSCCCCEEEEEEEETTEEEEESSC--------SCEEEETTTCEEEEECCSSCCSSCEEEE
T ss_pred             cCCccceEEEee---ccCCCccccceeeeeeecccceEEeeccc--------ccceeeeeeEEeeecccCCCCcccEEEE
Confidence            356899998542   12222346789999999999999775311        13568888777775432 2334458999


Q ss_pred             EeCCCc-EEEEECCCHHHHHHHHHHHHHhhC
Q psy10626        127 YCTDGS-EFLFLAPSETLMEDWVNKISFHAQ  156 (344)
Q Consensus       127 ~tpdg~-eyLFqAeSeeEM~eWI~AIr~aaa  156 (344)
                      ..+||+ ..+|.|.|..+.+.|.++|+.++.
T Consensus        74 hSpDG~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          74 CAADGQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             EETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCceEEEEcCCHHHHHHHHHHHHHhhc
Confidence            999996 688999999999999999986653

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.43  E-value=0.0054  Score=49.15  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhh-cccCCCccEEecccEEEecCCCCCCcce
Q psy10626         45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV-ASKAATSPIIIFKARCEKAGDYTKRKHV  123 (344)
Q Consensus        45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a-~~~a~~~~IsL~ga~v~ia~dy~KRKnV  123 (344)
                      .+|.+..+|++....    +.    .+. +.||+.|=.+.|.|+|...... +.......|.|.+..+.-..+   ....
T Consensus         6 ~~G~ll~~~~f~v~~----~~----~k~-k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~g---d~~~   73 (119)
T d1fhoa_           6 KLGRIIRHDAFQVWE----GD----EPP-KLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTT---DEDT   73 (119)
T ss_dssp             CCCCSSEEEEEEECS----TT----CSC-EEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECT---TCCE
T ss_pred             hCCceEEEeEEEEEe----CC----CCc-eEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcCC---CCcE
Confidence            578888999887542    11    122 3678888888888887543321 112234668888776653322   2347


Q ss_pred             EEEEeCCC--c----EEEEECCCHHHHHHHHHHHHHh
Q psy10626        124 FRLYCTDG--S----EFLFLAPSETLMEDWVNKISFH  154 (344)
Q Consensus       124 FrL~tpdg--~----eyLFqAeSeeEM~eWI~AIr~a  154 (344)
                      |.|...+.  .    .+.++|.++++.+.|+++|+.+
T Consensus        74 F~i~~~~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~  110 (119)
T d1fhoa_          74 IVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEE  110 (119)
T ss_dssp             EEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCcceEEEEEecCCHHHHHHHHHHHHHH
Confidence            88875532  1    4667889999999999999754

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.00095  Score=56.50  Aligned_cols=42  Identities=12%  Similarity=0.011  Sum_probs=38.9

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCccccccccccccc
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYEE  216 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~~~~~~~~~~  216 (344)
                      ..+|.+..+|.+++.+.|+..|||||.+|.+++.++...|++
T Consensus        12 ~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~~i~~l~~~~~~   53 (184)
T d1pbwa_          12 DIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAELRQLLDC   53 (184)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCTTHHHHHSCS
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCeeeCCchHHHHHHHHHHhc
Confidence            578999999999999999999999999999988889888876

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.22  E-value=0.0021  Score=54.10  Aligned_cols=44  Identities=11%  Similarity=0.063  Sum_probs=37.1

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ..++.++++|.+++.++|+..+||||.+|...- +.+.+.|++..
T Consensus         5 ~~~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~   49 (191)
T d1f7ca_           5 SIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPK   49 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC-
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcC
Confidence            467889999999999999999999999997655 77778887653

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.0083  Score=50.21  Aligned_cols=44  Identities=7%  Similarity=0.123  Sum_probs=38.6

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP  218 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~  218 (344)
                      ...|.++++|.+++-++|+..||+||.+|.... +.+...|+.-+
T Consensus        16 ~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~   60 (196)
T d1xa6a1          16 TQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDG   60 (196)
T ss_dssp             CSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTT
T ss_pred             CCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCC
Confidence            467999999999999999999999999998765 88888887644

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.03  Score=46.93  Aligned_cols=42  Identities=7%  Similarity=0.123  Sum_probs=38.0

Q ss_pred             CCCcchhhhhcccccccccCCCccccCCCcccc-ccccccccc
Q psy10626        175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEE  216 (344)
Q Consensus       175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~  216 (344)
                      ...|.+..+|.+++.++|+..+|+||.+|..+. +.+.+.|+.
T Consensus        22 ~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~   64 (196)
T d1tx4a_          22 EPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNM   64 (196)
T ss_dssp             CSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhC
Confidence            457999999999999999999999999999886 888888875