Psyllid ID: psy10628

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MNGDDGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MNGDDGLSSLKEAflnnddigeSLSGVEALLRKHKAFenkeaflnnddigeSLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILqkqqicadesyrdptnlQSKIQKHAAFESELAANKSRVgavtaegeslisgghFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK
MNGDDGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENkeaflnnddiGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEhhydssgiqqRLQAVIarkdrlketstarrkrliesrqMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEgeslisgghFAAAEIKTRLDELELEWRQLqessalkrerlsdayqtqrhk
MNGDDGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK
**************************VEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVI**********************MQQFLRNMYEVGGWILQKQQICADE*************************************SLISGGHFAAAEIKTRLDELELEW************************
MNGDDGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEA***********SGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQIC********TNLQSKIQKHAAFESELAANKSRVGAVTAEGESLI********EIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK
MNGDDGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRER***********
MNGDDGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQT*RH*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNGDDGLSSLKEAFLNNDDIGESLSGxxxxxxxxxxxxxxxxxxxxxDIGESLSGVEALLRKHKAFEKAxxxxxxxxxxxxxxxxxxxxxHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAxxxxxxxxxxxxxxxxxxxxxSALKRERLSDAYQTQRHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
P07751 2477 Spectrin alpha chain, non no N/A 0.798 0.076 0.426 7e-41
P16086 2472 Spectrin alpha chain, non yes N/A 0.819 0.078 0.426 1e-40
P16546 2472 Spectrin alpha chain, non yes N/A 0.819 0.078 0.426 1e-40
Q13813 2472 Spectrin alpha chain, non yes N/A 0.819 0.078 0.426 2e-40
P13395 2415 Spectrin alpha chain OS=D no N/A 0.819 0.080 0.451 3e-40
P02549 2419 Spectrin alpha chain, ery no N/A 0.802 0.078 0.391 4e-34
P08032 2415 Spectrin alpha chain, ery no N/A 0.802 0.079 0.381 2e-27
Q9NRC6 3674 Spectrin beta chain, non- no N/A 0.785 0.050 0.348 4e-22
Q01082 2364 Spectrin beta chain, non- no N/A 0.945 0.095 0.297 5e-20
Q62261 2363 Spectrin beta chain, non- no N/A 0.945 0.095 0.293 3e-19
>sp|P07751|SPTN1_CHICK Spectrin alpha chain, non-erythrocytic 1 OS=Gallus gallus GN=SPTAN1 PE=1 SV=3 Back     alignment and function desciption
 Score =  167 bits (422), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 134/197 (68%)

Query: 40  KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
           +EAFL N+D+G+SL  VEALL+KH+ FEK+L AQ  +I  L++FA  L+  +HY    + 
Sbjct: 486 QEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYAMDDVA 545

Query: 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPT 159
            R  A+++R++ L E +  RR +L +S  +QQF R+  E+  W+ +K +   DE+Y+DP+
Sbjct: 546 TRRDALLSRRNALHERAMKRRAQLADSFHLQQFFRDSDELKSWVNEKMKTATDEAYKDPS 605

Query: 160 NLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQE 219
           NLQ K+QKH AFE+EL+AN+SR+ A+   G+ LI   H+A+ E+  R++E+   W++L E
Sbjct: 606 NLQGKVQKHQAFEAELSANQSRIDALEKAGQKLIDVNHYASDEVAARMNEVISLWKKLLE 665

Query: 220 SSALKRERLSDAYQTQR 236
           ++ LK  +L +A Q Q+
Sbjct: 666 ATELKGIKLREANQQQQ 682
Morphologically, spectrin-like proteins appear to be related to spectrin, showing a flexible rod-like structure. They can bind actin but seem to differ in their calmodulin-binding activity. In nonerythroid tissues, spectrins, in association with some other proteins, may play an important role in membrane organization.
Gallus gallus (taxid: 9031)
>sp|P16086|SPTN1_RAT Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus GN=Sptan1 PE=1 SV=2 Back     alignment and function description
>sp|P16546|SPTN1_MOUSE Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus GN=Sptan1 PE=1 SV=4 Back     alignment and function description
>sp|Q13813|SPTN1_HUMAN Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTAN1 PE=1 SV=3 Back     alignment and function description
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila melanogaster GN=alpha-Spec PE=1 SV=2 Back     alignment and function description
>sp|P02549|SPTA1_HUMAN Spectrin alpha chain, erythrocytic 1 OS=Homo sapiens GN=SPTA1 PE=1 SV=5 Back     alignment and function description
>sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocytic 1 OS=Mus musculus GN=Spta1 PE=2 SV=3 Back     alignment and function description
>sp|Q9NRC6|SPTN5_HUMAN Spectrin beta chain, non-erythrocytic 5 OS=Homo sapiens GN=SPTBN5 PE=1 SV=1 Back     alignment and function description
>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2 Back     alignment and function description
>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus GN=Sptbn1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
328720391 4083 PREDICTED: spectrin beta chain-like isof 0.802 0.046 0.651 4e-71
328720389 4047 PREDICTED: spectrin beta chain-like isof 0.802 0.047 0.651 5e-71
307173781 4197 Spectrin beta chain, brain 4 [Camponotus 0.802 0.045 0.656 2e-68
383856370 4280 PREDICTED: spectrin beta chain, brain 4- 0.785 0.043 0.661 2e-67
328777761 4216 PREDICTED: spectrin beta chain [Apis mel 0.785 0.044 0.651 3e-67
350407651 4247 PREDICTED: spectrin beta chain, brain 4- 0.785 0.044 0.651 4e-67
307194983 3331 Spectrin beta chain, brain 4 [Harpegnath 0.785 0.056 0.630 6e-67
340717276 4224 PREDICTED: spectrin beta chain, brain 4- 0.785 0.044 0.646 1e-66
380030708 4164 PREDICTED: LOW QUALITY PROTEIN: spectrin 0.785 0.044 0.646 1e-66
340717274 4143 PREDICTED: spectrin beta chain, brain 4- 0.785 0.045 0.646 1e-66
>gi|328720391|ref|XP_001946129.2| PREDICTED: spectrin beta chain-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/195 (65%), Positives = 162/195 (83%)

Query: 39   NKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGI 98
            +KEAFL+NDD+GESLS VE L+RKH+AFEK L AQL ++++LEK+A DL+   HYDS+GI
Sbjct: 2676 SKEAFLSNDDLGESLSSVEELIRKHEAFEKTLTAQLVKVEELEKYALDLVTGQHYDSNGI 2735

Query: 99   QQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDP 158
            Q RL ++  R+DRLKE + +R++RL +SR +QQFLRNMYEV GWI+QKQQ+  DESYRDP
Sbjct: 2736 QGRLVSICNRRDRLKEATASRKRRLNDSRLLQQFLRNMYEVEGWIIQKQQVAGDESYRDP 2795

Query: 159  TNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQ 218
            TNLQ K+QKHA F+SEL AN++RV A+  EGE+LIS GHFA+ EI+ RLDELE +WR LQ
Sbjct: 2796 TNLQRKMQKHATFDSELIANRTRVNAICTEGENLISSGHFASMEIRVRLDELETKWRLLQ 2855

Query: 219  ESSALKRERLSDAYQ 233
            E S+LK++RL DAYQ
Sbjct: 2856 EMSSLKKQRLQDAYQ 2870

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328720389|ref|XP_003247015.1| PREDICTED: spectrin beta chain-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307173781|gb|EFN64568.1| Spectrin beta chain, brain 4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383856370|ref|XP_003703682.1| PREDICTED: spectrin beta chain, brain 4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328777761|ref|XP_396777.4| PREDICTED: spectrin beta chain [Apis mellifera] Back     alignment and taxonomy information
>gi|350407651|ref|XP_003488149.1| PREDICTED: spectrin beta chain, brain 4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307194983|gb|EFN77073.1| Spectrin beta chain, brain 4 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340717276|ref|XP_003397111.1| PREDICTED: spectrin beta chain, brain 4-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380030708|ref|XP_003698985.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 4-like [Apis florea] Back     alignment and taxonomy information
>gi|340717274|ref|XP_003397110.1| PREDICTED: spectrin beta chain, brain 4-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
UNIPROTKB|F1NV58 3622 SPTBN5 "Uncharacterized protei 0.819 0.053 0.492 1.7e-50
FB|FBgn0004167 4337 kst "karst" [Drosophila melano 0.806 0.044 0.489 3.3e-48
ZFIN|ZDB-GENE-051113-60 2480 spna2 "spectrin alpha 2" [Dani 0.827 0.079 0.441 5.9e-46
FB|FBgn0250789 2415 alpha-Spec "alpha Spectrin" [D 0.827 0.081 0.451 4e-43
UNIPROTKB|F1NHT4 2445 SPTAN1 "Spectrin alpha chain, 0.827 0.080 0.426 6.5e-43
UNIPROTKB|F1NHT3 2465 SPTAN1 "Spectrin alpha chain, 0.827 0.079 0.426 6.7e-43
UNIPROTKB|F1NIU0 2470 SPTAN1 "Spectrin alpha chain, 0.827 0.079 0.426 6.7e-43
UNIPROTKB|P07751 2477 SPTAN1 "Spectrin alpha chain, 0.827 0.079 0.426 6.8e-43
UNIPROTKB|F1NHF0 2479 SPTAN1 "Spectrin alpha chain, 0.827 0.079 0.426 6.8e-43
UNIPROTKB|J9P2H0 2452 SPTAN1 "Uncharacterized protei 0.827 0.080 0.426 8.4e-43
UNIPROTKB|F1NV58 SPTBN5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 507 (183.5 bits), Expect = 1.7e-50, Sum P(2) = 1.7e-50
 Identities = 96/195 (49%), Positives = 139/195 (71%)

Query:    39 NKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGI 98
             +KEAFL N+D+G+S+S VE+L RKH  FEK+LEAQ+ +ID++  FA+ L+   HYDS  I
Sbjct:  2574 SKEAFLANEDLGDSVSSVESLQRKHMQFEKSLEAQMEKIDEMASFAQQLIQNKHYDSDNI 2633

Query:    99 QQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDP 158
               R QAV+ RK++L E + ARR  L ESR +Q+ L+N YEV  WI +K  I  D+S+RDP
Sbjct:  2634 TNRCQAVLRRKEKLLENAAARRHLLEESRLLQKLLKNSYEVATWINEKNSIAQDDSWRDP 2693

Query:   159 TNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQ 218
             +NLQ+K+QKH +F++E+ ANK+R+ ++ +EGE +I   H+A   I++RL E+E  W +L 
Sbjct:  2694 SNLQTKLQKHQSFQAEIMANKNRLDSIKSEGEKMIRERHYAPEAIQSRLQEMEELWEELL 2753

Query:   219 ESSALKRERLSDAYQ 233
              S   KR +L DAY+
Sbjct:  2754 ASCQDKRAKLQDAYK 2768
GO:0005543 "phospholipid binding" evidence=IEA
GO:0003779 "actin binding" evidence=IEA
FB|FBgn0004167 kst "karst" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051113-60 spna2 "spectrin alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0250789 alpha-Spec "alpha Spectrin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHT4 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHT3 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIU0 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P07751 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHF0 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9P2H0 SPTAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 7e-33
smart00150101 smart00150, SPEC, Spectrin repeats 1e-17
pfam00435105 pfam00435, Spectrin, Spectrin repeat 3e-17
cd00176 213 cd00176, SPEC, Spectrin repeats, found in several 4e-16
smart00150101 smart00150, SPEC, Spectrin repeats 2e-15
pfam00435105 pfam00435, Spectrin, Spectrin repeat 6e-15
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 4e-04
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information 
 Score =  118 bits (297), Expect = 7e-33
 Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 2/197 (1%)

Query: 38  ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
             KE  L++ D G+ L  VEALL+KH+A E  L A   R++ L +  + L+ E H D+  
Sbjct: 17  SEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEE 76

Query: 98  IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
           IQ+RL+ +  R + L+E +  RR+RL E+  +QQF R+  ++  W+ +K+   A E   +
Sbjct: 77  IQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGK 136

Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAA-AEIKTRLDELELEWR 215
           D  +++  ++KH   E EL A++ R+ ++    E L+  GH  A  EI+ +L+EL   W 
Sbjct: 137 DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWE 196

Query: 216 QLQESSALKRERLSDAY 232
           +L E +  ++++L +A 
Sbjct: 197 ELLELAEERQKKLEEAL 213

Length = 213
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats Back     alignment and domain information
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats Back     alignment and domain information
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
KOG0517|consensus 2473 99.97
KOG0517|consensus 2473 99.97
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.96
KOG0040|consensus 2399 99.94
KOG0040|consensus 2399 99.89
smart00150101 SPEC Spectrin repeats. 99.68
smart00150101 SPEC Spectrin repeats. 99.67
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 99.65
KOG4286|consensus 966 99.63
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 99.62
cd00176 213 SPEC Spectrin repeats, found in several proteins i 99.46
KOG4286|consensus 966 99.13
KOG4240|consensus 1025 98.02
KOG0035|consensus 890 96.11
KOG4240|consensus 1025 95.75
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.62
KOG0994|consensus 1758 86.38
COG5185 622 HEC1 Protein involved in chromosome segregation, i 84.73
TIGR03545 555 conserved hypothetical protein TIGR03545. This mod 80.86
KOG0516|consensus 1047 80.1
>KOG0517|consensus Back     alignment and domain information 
Probab=99.97  E-value=1.3e-28  Score=232.24  Aligned_cols=233  Identities=32%  Similarity=0.518  Sum_probs=219.9

Q ss_pred             CchhhHHHHHHHHHchHH-HHhHhhh---HHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhH
Q psy10628          2 NGDDGLSSLKEAFLNNDD-IGESLSG---VEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRI   77 (238)
Q Consensus         2 ~~~~~~~~l~~~w~~r~~-l~~~l~~---~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v   77 (238)
                      +++.||..|..-|..|++ |.+.+.+   ..+..+.+.-+.+.|.+|+..++|.+++.++++|++|.+|...+.+...++
T Consensus      1141 ~L~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki 1220 (2473)
T KOG0517|consen 1141 ALGTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKI 1220 (2473)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            467899999999999987 5554433   235559999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCCCC
Q psy10628         78 DDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRD  157 (238)
Q Consensus        78 ~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d  157 (238)
                      +.+...|+.|+..+|++++.|+++...|..+|..+...+.+|.++|.+++.++.|.++|+++..||.+|..+..+.++.+
T Consensus      1221 ~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~ 1300 (2473)
T KOG0517|consen 1221 EALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRD 1300 (2473)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888888999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10628        158 PTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQT  234 (238)
Q Consensus       158 ~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~  234 (238)
                      +.+|...+.+|++|++||.++++.++.|...|+.|+..+|+..+.|+.++.+|+.+|..|...+.++...|.+|-+.
T Consensus      1301 ~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q 1377 (2473)
T KOG0517|consen 1301 ARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQ 1377 (2473)
T ss_pred             hhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998764

>KOG0517|consensus Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03545 conserved hypothetical protein TIGR03545 Back     alignment and domain information
>KOG0516|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
3f31_A149 Crystal Structure Of The N-Terminal Region Of Alpha 3e-25
1u4q_A 322 Crystal Structure Of Repeats 15, 16 And 17 Of Chick 4e-23
1u5p_A216 Crystal Structure Of Repeats 15 And 16 Of Chicken B 1e-22
1cun_A213 Crystal Structure Of Repeats 16 And 17 Of Chicken B 6e-19
1cun_A 213 Crystal Structure Of Repeats 16 And 17 Of Chicken B 8e-09
3fb2_A218 Crystal Structure Of The Human Brain Alpha Spectrin 5e-16
3fb2_A218 Crystal Structure Of The Human Brain Alpha Spectrin 8e-06
1owa_A156 Solution Structural Studies On Human Erythrocyte Al 1e-15
3lbx_A161 Crystal Structure Of The Erythrocyte Spectrin Tetra 1e-15
1aj3_A110 Solution Structure Of The Spectrin Repeat, Nmr, 20 2e-09
2spc_A107 Crystal Structure Of The Repetitive Segments Of Spe 4e-09
2spc_A107 Crystal Structure Of The Repetitive Segments Of Spe 2e-04
3edv_A323 Crystal Structure Of Repeats 14-16 Of Beta2-Spectri 5e-08
1sjj_A 863 Cryo-Em Structure Of Chicken Gizzard Smooth Muscle 8e-07
1hci_A 476 Crystal Structure Of The Rod Domain Of Alpha-Actini 3e-06
1quu_A250 Crystal Structure Of Two Central Spectrin-Like Repe 3e-06
3kbu_A 326 Crystal Structure Of The Ankyrin Binding Domain Of 8e-05
3kbt_A 326 Crystal Structure Of The Ankyrin Binding Domain Of 1e-04
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of Alphaii-Spectr Tetramerization Domain Length = 149 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 80/122 (65%)
Query: 98  IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRD 157
           IQ+R Q V+ R  R KE ST RR++L +S + Q F R+  E+  WI +K QI +DE+Y+D
Sbjct: 17  IQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKD 76
Query: 158 PTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQL 217
           PTNLQ K+QKH AFE+E+ AN   +  +   G  +IS GHFA+  I+TRL EL  +W  L
Sbjct: 77  PTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELL 136
Query: 218 QE 219
            E
Sbjct: 137 LE 138
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken Brain Alpha Spectrin Length = 322 Back     alignment and structure
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain Alpha Spectrin Length = 216 Back     alignment and structure
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain Alpha Spectrin Length = 213 Back     alignment and structure
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain Alpha Spectrin Length = 213 Back     alignment and structure
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin Repeats 15 And 16. Northeast Structural Genomics Consortium Target Hr5563a. Length = 218 Back     alignment and structure
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin Repeats 15 And 16. Northeast Structural Genomics Consortium Target Hr5563a. Length = 218 Back     alignment and structure
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha Spectrin N Terminal Tetramerization Domain Length = 156 Back     alignment and structure
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin Tetramerization Domain Complex Length = 161 Back     alignment and structure
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20 Structures Length = 110 Back     alignment and structure
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin Length = 107 Back     alignment and structure
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin Length = 107 Back     alignment and structure
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin Length = 323 Back     alignment and structure
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863 Back     alignment and structure
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin Length = 476 Back     alignment and structure
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats From Alpha-Actinin Length = 250 Back     alignment and structure
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human Erythroid Beta Spectrin (Repeats 13-15) In Complex With The Spectrin Binding Domain Of Human Erythroid Ankyrin (Zu5-Ank), Emts Derivative Length = 326 Back     alignment and structure
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human Erythroid Beta Spectrin (Repeats 13-15) In Complex With The Spectrin Binding Domain Of Human Erythroid Ankyrin (Zu5-Ank) Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 2e-34
1u5p_A 216 Spectrin alpha chain, brain; alpha spectrin, two r 4e-12
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 3e-06
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 1e-32
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 7e-30
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 3e-12
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 1e-11
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 4e-32
1cun_A 213 Protein (alpha spectrin); two repeats of spectrin, 8e-14
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 8e-07
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-32
3edu_A 218 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-09
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 5e-06
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 4e-31
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 2e-09
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 8e-30
1s35_A 214 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-10
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 8e-30
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 2e-15
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 4e-13
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 2e-29
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 3e-10
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 3e-29
3kbt_A 326 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-29
3kbt_A 326 Beta-I spectrin, spectrin beta chain, erythrocyte; 6e-15
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 7e-04
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 4e-29
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 6e-27
3edv_A 323 Spectrin beta chain, brain 1; spectrin repeat, coi 2e-10
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 3e-10
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 3e-27
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 4e-12
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 1e-07
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 2e-26
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 8e-08
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-24
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 5e-16
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-08
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 2e-22
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 1e-16
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 2e-06
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 1e-21
1quu_A 250 Human skeletal muscle alpha-actinin 2; triple-heli 3e-11
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 6e-07
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 1e-20
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 6e-18
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 2e-20
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 9e-17
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 4e-18
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 6e-13
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 7e-10
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 3e-17
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 8e-14
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 8e-10
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 9e-09
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 1e-04
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
 Score =  121 bits (306), Expect = 2e-34
 Identities = 61/197 (30%), Positives = 108/197 (54%), Gaps = 1/197 (0%)

Query: 38  ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
              EA L ++D G+ L+ V  LL+KH+  E  + A   R+ DL   A  L+    +D+S 
Sbjct: 20  SEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQ 79

Query: 98  IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
           ++ + + +  R  R+K  + ARR +L ES ++ QF R+M +   WI +K+ + + E Y R
Sbjct: 80  VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139

Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
           D T +Q+  +KH   E+ELAA++  +  V   G+ L         EI+ RL +    W++
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199

Query: 217 LQESSALKRERLSDAYQ 233
           L++ +A + +RL ++ +
Sbjct: 200 LKQLAAARGQRLEESLE 216
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Length = 107 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Length = 107 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Length = 235 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 100.0
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 100.0
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 100.0
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 100.0
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 100.0
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 100.0
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 100.0
3kbt_A 326 Beta-I spectrin, spectrin beta chain, erythrocyte; 100.0
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 100.0
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 100.0
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 100.0
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 100.0
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 100.0
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 100.0
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.97
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.97
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.95
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.95
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.95
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.94
3r6n_A450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.93
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.93
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.92
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.87
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.8
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.79
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.79
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.76
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.75
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.75
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.75
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.74
1quu_A 250 Human skeletal muscle alpha-actinin 2; triple-heli 99.74
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.74
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.74
1cun_A 213 Protein (alpha spectrin); two repeats of spectrin, 99.74
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 99.72
3edu_A 218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.72
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.71
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.7
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.68
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.68
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.67
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.65
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.62
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.31
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 99.2
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.13
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 98.83
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 98.69
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-37  Score=247.05  Aligned_cols=209  Identities=29%  Similarity=0.505  Sum_probs=196.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHH
Q psy10628         25 SGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQA  104 (238)
Q Consensus        25 ~~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~  104 (238)
                      .|...+.++.+||.+++..|.+.++|.|+..|+.++++|+.|+.+|.++.++|..|+..|..|+..++++++.|..++..
T Consensus         7 ~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~   86 (216)
T 1u5p_A            7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRET   86 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34445559999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCC-CChhhHHHHHHHHHHHHHHHHhhhhhHH
Q psy10628        105 VIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVG  183 (238)
Q Consensus       105 L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~-~d~~~i~~~l~kh~~~~~ei~~~~~~v~  183 (238)
                      |+.+|+.|+..+..|+.+|+.++.+++|..+++++..||.+++..++++++ +|+..|+.++++|++|+.+|.++.+.|.
T Consensus        87 l~~~w~~L~~~~~~R~~~Le~~~~l~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~  166 (216)
T 1u5p_A           87 INGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQ  166 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999999999999999999998877665 7899999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628        184 AVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQ  233 (238)
Q Consensus       184 ~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~  233 (238)
                      .|...|+.|+..+|++++.|+.+++.|+.+|..|+..+..|+..|+++++
T Consensus       167 ~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~al~  216 (216)
T 1u5p_A          167 GVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE  216 (216)
T ss_dssp             HHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999998863
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 238
d1owaa_156 a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sap 2e-19
d1owaa_156 a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sap 6e-07
d2spca_107 a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. 1e-16
d2spca_107 a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. 1e-14
d1cuna2104 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken 4e-16
d1cuna2104 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken 1e-14
d1u5pa2101 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke 8e-16
d1u5pa2101 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke 9e-14
d1u5pa1110 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke 8e-16
d1u5pa1110 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke 4e-14
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 4e-15
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 5e-13
d1hcia4114 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sap 7e-15
d1hcia4114 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sap 4e-09
d1s35a2105 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human ( 2e-13
d1s35a2105 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human ( 1e-11
d1s35a1106 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human ( 2e-10
d1s35a1106 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human ( 7e-08
d1quua2124 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sap 6e-09
d1quua2124 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sap 2e-08
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 2e-19
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 5/154 (3%)

Query: 80  LEKFAKDLLAEHHY-----DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLR 134
           +E+F K+ + E         +  IQ+R Q V+ R    KE    R ++L +S  +Q F R
Sbjct: 1   MEQFPKETVVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 60

Query: 135 NMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS 194
           +  ++G WI++K  I  D+SY DPTN+Q K QKH + E+E+      +  +    E   +
Sbjct: 61  DADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 120

Query: 195 GGHFAAAEIKTRLDELELEWRQLQESSALKRERL 228
            GH A  E K  ++EL   W  L E +  K ++L
Sbjct: 121 MGHSAHEETKAHIEELRHLWDLLLELTLEKGDQL 154
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107 Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107 Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104 Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104 Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101 Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101 Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110 Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110 Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.87
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.81
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.8
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.79
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.79
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.79
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.78
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.76
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.76
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.74
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.73
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.72
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.7
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.67
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.61
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.53
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 97.49
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 97.19
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9e-23  Score=153.36  Aligned_cols=136  Identities=34%  Similarity=0.530  Sum_probs=130.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHH
Q psy10628         94 DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFES  173 (238)
Q Consensus        94 ~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~  173 (238)
                      .+..|+.++..|+.+|+.|+..+.+|+.+|+.++.++.|..+++++..||.+++..+.++.++|+..+..++++|+.|+.
T Consensus        20 ~~~~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~~~~~F~~~~~~l~~Wl~e~e~~~~~~~~~d~~~~~~~~~~h~~l~~   99 (156)
T d1owaa_          20 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEA   99 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999988877667899999999999999999


Q ss_pred             HHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628        174 ELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLS  229 (238)
Q Consensus       174 ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~  229 (238)
                      +|.++++.|..|+..|+.|+..+|++++.|+.+++.|+.+|..|+..+.+|..+|.
T Consensus       100 ei~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~W~~L~~~~~~R~~~L~  155 (156)
T d1owaa_         100 EVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLL  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999884
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure