Psyllid ID: psy10634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MQLKESLGFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNTH
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcc
ccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcc
mqlkeslgfsnvAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYktscffpfhryrslqepmqIRRDNLEDALLLYQYLRDVDDEMQWLLekeplavstdLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGylesnllnpmslwkTKHSLLIFQFYAEVAEAEVWLKekkpilhssdfgrdeDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDrnhfdskniskkqvnth
mqlkeslgfsnVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPilhssdfgrdedSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLdrnhfdskniskkqvnth
MQLKESLGFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNTH
*******GFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLL**********************************************************************LASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLD*****************
**********************************************************FFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLA******N*LTAVQSLQKKHQALETELASREPVVSALASRAKQMS********RIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPI**********DSVLSLIKKLESLERELVSFQHTVGHLSKLCQS*************KKQV***
MQLKESLGFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAV*************************************AAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNI********
*Q***SLGFSNVAWQ*R*VHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFD**NISKK*****
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MQLKESLGFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSxxxxxxxxxxxxxxxxxxxxxVGHLSKLCQSLLDRNHFDSKNISKKQVNTH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
P16086 2472 Spectrin alpha chain, non yes N/A 0.630 0.077 0.381 2e-36
P16546 2472 Spectrin alpha chain, non yes N/A 0.630 0.077 0.381 2e-36
Q13813 2472 Spectrin alpha chain, non yes N/A 0.630 0.077 0.377 9e-36
P07751 2477 Spectrin alpha chain, non yes N/A 0.630 0.077 0.368 7e-35
P13395 2415 Spectrin alpha chain OS=D no N/A 0.627 0.078 0.342 7e-27
Q9H254 2564 Spectrin beta chain, non- no N/A 0.663 0.078 0.334 5e-23
Q9NRC6 3674 Spectrin beta chain, non- no N/A 0.676 0.055 0.307 5e-23
P08032 2415 Spectrin alpha chain, ery no N/A 0.627 0.078 0.319 5e-23
Q00963 2291 Spectrin beta chain OS=Dr no N/A 0.768 0.101 0.276 5e-22
Q01082 2364 Spectrin beta chain, non- no N/A 0.683 0.087 0.295 1e-19
>sp|P16086|SPTN1_RAT Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus GN=Sptan1 PE=1 SV=2 Back     alignment and function desciption
 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 29/220 (13%)

Query: 64  RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
           RY +L+EPM  R+  L D+L L Q  RDV+DE  W+ EKEP+A ST+ G  L  VQ+L K
Sbjct: 765 RYEALKEPMVARKQKLADSLRLQQLFRDVEDEETWIREKEPIAASTNRGKDLIGVQNLLK 824

Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
           KHQAL+ E+A  EP + A+  +   M    HFAA  ++   S L  K  +L+  AS RR 
Sbjct: 825 KHQALQAEIAGHEPRIKAVTQKGNAMVEEGHFAAEDVKAKLSELNQKWEALKAKASQRRQ 884

Query: 184 RLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHS 243
            L D+L++Q                             Q++A+  EAE W++EK+PI+ S
Sbjct: 885 DLEDSLQAQ-----------------------------QYFADANEAESWMREKEPIVGS 915

Query: 244 SDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQS 283
           +D+G+DEDS  +L+KK E+L  +L ++  ++  L +  QS
Sbjct: 916 TDYGKDEDSAEALLKKHEALMSDLSAYGSSIQALREQAQS 955
Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane.
Rattus norvegicus (taxid: 10116)
>sp|P16546|SPTN1_MOUSE Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus GN=Sptan1 PE=1 SV=4 Back     alignment and function description
>sp|Q13813|SPTN1_HUMAN Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTAN1 PE=1 SV=3 Back     alignment and function description
>sp|P07751|SPTN1_CHICK Spectrin alpha chain, non-erythrocytic 1 OS=Gallus gallus GN=SPTAN1 PE=1 SV=3 Back     alignment and function description
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila melanogaster GN=alpha-Spec PE=1 SV=2 Back     alignment and function description
>sp|Q9H254|SPTN4_HUMAN Spectrin beta chain, non-erythrocytic 4 OS=Homo sapiens GN=SPTBN4 PE=1 SV=2 Back     alignment and function description
>sp|Q9NRC6|SPTN5_HUMAN Spectrin beta chain, non-erythrocytic 5 OS=Homo sapiens GN=SPTBN5 PE=1 SV=1 Back     alignment and function description
>sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocytic 1 OS=Mus musculus GN=Spta1 PE=2 SV=3 Back     alignment and function description
>sp|Q00963|SPTCB_DROME Spectrin beta chain OS=Drosophila melanogaster GN=beta-Spec PE=1 SV=2 Back     alignment and function description
>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
340717276 4224 PREDICTED: spectrin beta chain, brain 4- 0.689 0.049 0.584 2e-70
340717274 4143 PREDICTED: spectrin beta chain, brain 4- 0.689 0.050 0.584 2e-70
350407651 4247 PREDICTED: spectrin beta chain, brain 4- 0.689 0.049 0.584 3e-70
383856370 4280 PREDICTED: spectrin beta chain, brain 4- 0.702 0.049 0.570 6e-69
307194983 3331 Spectrin beta chain, brain 4 [Harpegnath 0.702 0.063 0.570 1e-67
307173781 4197 Spectrin beta chain, brain 4 [Camponotus 0.709 0.051 0.561 1e-67
345481110 4271 PREDICTED: spectrin beta chain, brain 1- 0.683 0.048 0.580 3e-66
328777761 4216 PREDICTED: spectrin beta chain [Apis mel 0.693 0.049 0.570 3e-66
380030708 4164 PREDICTED: LOW QUALITY PROTEIN: spectrin 0.693 0.050 0.566 6e-66
170047716 4186 spectrin alpha chain [Culex quinquefasci 0.702 0.050 0.541 4e-63
>gi|340717276|ref|XP_003397111.1| PREDICTED: spectrin beta chain, brain 4-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/238 (58%), Positives = 173/238 (72%), Gaps = 29/238 (12%)

Query: 62   FHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSL 121
             +RY SLQEP+QIRRDNLEDA LL+Q+ RDV+DEM WL EKEPLA S+DLG+SLT VQ L
Sbjct: 3017 INRYHSLQEPIQIRRDNLEDAKLLHQFTRDVEDEMHWLSEKEPLAASSDLGSSLTTVQRL 3076

Query: 122  QKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVR 181
            QKKH ALE EL SREPVV++L SRA  M RS HFA+ +IE  +  LQDKL+ L++ ASVR
Sbjct: 3077 QKKHHALEAELISREPVVASLVSRATIMVRSGHFASEKIEKLSQELQDKLSHLKDLASVR 3136

Query: 182  RLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPIL 241
            +LRLLDA+ESQM                             FYAE AEAE W+KEK P L
Sbjct: 3137 KLRLLDAVESQM-----------------------------FYAEAAEAEQWIKEKHPQL 3167

Query: 242  HSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
             ++D+G+DEDSV SL+KKLE +ER+L+ F++T+G+L KL   L+DR+HFDSKNI++KQ
Sbjct: 3168 TATDYGKDEDSVQSLLKKLEEIERDLIGFENTIGNLKKLSHGLIDRHHFDSKNITQKQ 3225

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340717274|ref|XP_003397110.1| PREDICTED: spectrin beta chain, brain 4-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350407651|ref|XP_003488149.1| PREDICTED: spectrin beta chain, brain 4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383856370|ref|XP_003703682.1| PREDICTED: spectrin beta chain, brain 4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307194983|gb|EFN77073.1| Spectrin beta chain, brain 4 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307173781|gb|EFN64568.1| Spectrin beta chain, brain 4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345481110|ref|XP_001606391.2| PREDICTED: spectrin beta chain, brain 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328777761|ref|XP_396777.4| PREDICTED: spectrin beta chain [Apis mellifera] Back     alignment and taxonomy information
>gi|380030708|ref|XP_003698985.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 4-like [Apis florea] Back     alignment and taxonomy information
>gi|170047716|ref|XP_001851358.1| spectrin alpha chain [Culex quinquefasciatus] gi|167870041|gb|EDS33424.1| spectrin alpha chain [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
FB|FBgn0004167 4337 kst "karst" [Drosophila melano 0.438 0.030 0.548 1.1e-37
UNIPROTKB|F1NV58 3622 SPTBN5 "Uncharacterized protei 0.422 0.035 0.429 2e-29
FB|FBgn0250789 2415 alpha-Spec "alpha Spectrin" [D 0.686 0.086 0.327 3.2e-17
UNIPROTKB|F1SSW9 3683 SPTBN5 "Uncharacterized protei 0.425 0.035 0.410 6.1e-26
UNIPROTKB|F1RR78 2452 SPTAN1 "Uncharacterized protei 0.739 0.091 0.327 1.7e-25
UNIPROTKB|J9P2H0 2452 SPTAN1 "Uncharacterized protei 0.739 0.091 0.327 2.8e-25
UNIPROTKB|F1PAP5 2477 SPTAN1 "Uncharacterized protei 0.739 0.090 0.327 2.8e-25
UNIPROTKB|E1BFB0 2472 SPTAN1 "Uncharacterized protei 0.739 0.090 0.323 4.5e-25
MGI|MGI:98386 2472 Sptan1 "spectrin alpha, non-er 0.739 0.090 0.323 5.8e-25
RGD|621714 2472 Sptan1 "spectrin, alpha, non-e 0.739 0.090 0.323 5.8e-25
FB|FBgn0004167 kst "karst" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 378 (138.1 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
 Identities = 73/133 (54%), Positives = 100/133 (75%)

Query:    64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
             RY +L EP+ IRR+NLED+L L Q+LRD +DE+QWL EK+ +A S DLG SL +VQ LQK
Sbjct:  3021 RYNTLHEPLGIRRENLEDSLSLQQFLRDAEDELQWLAEKQLVAGSQDLGTSLLSVQGLQK 3080

Query:   124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
             KH +LE EL S+EP++ AL  R +QM R  HFA+ +++  +  LQ +L  LR+ A++RRL
Sbjct:  3081 KHNSLEAELTSQEPLIQALLQRGQQMIRDNHFASEQLQYKSELLQKQLVQLRDLAAIRRL 3140

Query:   184 RLLDALESQMLYL 196
             RLLDA+ESQ+ Y+
Sbjct:  3141 RLLDAVESQLFYV 3153
GO:0030707 "ovarian follicle cell development" evidence=TAS
GO:0007009 "plasma membrane organization" evidence=TAS
GO:0003779 "actin binding" evidence=ISS;IDA
GO:0008017 "microtubule binding" evidence=IDA
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0008091 "spectrin" evidence=ISS
GO:0016327 "apicolateral plasma membrane" evidence=TAS
GO:0045186 "zonula adherens assembly" evidence=TAS
GO:0000910 "cytokinesis" evidence=IMP
GO:0005543 "phospholipid binding" evidence=IEA
GO:0006897 "endocytosis" evidence=IMP
GO:0016324 "apical plasma membrane" evidence=IDA
GO:0005912 "adherens junction" evidence=IDA
GO:0032432 "actin filament bundle" evidence=IDA
GO:0042060 "wound healing" evidence=IMP
GO:0010797 "regulation of multivesicular body size involved in endosome transport" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IMP
UNIPROTKB|F1NV58 SPTBN5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0250789 alpha-Spec "alpha Spectrin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSW9 SPTBN5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR78 SPTAN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P2H0 SPTAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAP5 SPTAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFB0 SPTAN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:98386 Sptan1 "spectrin alpha, non-erythrocytic 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621714 Sptan1 "spectrin, alpha, non-erythrocytic 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 2e-31
smart00150101 smart00150, SPEC, Spectrin repeats 3e-21
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 1e-20
pfam00435105 pfam00435, Spectrin, Spectrin repeat 2e-20
smart00150101 smart00150, SPEC, Spectrin repeats 9e-14
pfam00435105 pfam00435, Spectrin, Spectrin repeat 8e-13
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information 
 Score =  116 bits (292), Expect = 2e-31
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 29/217 (13%)

Query: 84  LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALA 143
            L Q+LRD D+   WL EKE L  STD G+ L +V++L KKH+ALE ELA+ E  V AL 
Sbjct: 1   KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALN 60

Query: 144 SRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLES 203
              +Q+    H  A  I+     L  +   LR  A  RR RL +AL+ Q           
Sbjct: 61  ELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQ----------- 109

Query: 204 NLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESL 263
                             QF+ +  + E WL+EK+  L S D G+D +SV  L+KK + L
Sbjct: 110 ------------------QFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKEL 151

Query: 264 ERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQV 300
           E EL + +  +  L++L + LL+  H D+    ++++
Sbjct: 152 EEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKL 188

Length = 213
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat Back     alignment and domain information
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats Back     alignment and domain information
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
KOG0517|consensus 2473 100.0
KOG0517|consensus 2473 100.0
KOG0040|consensus 2399 99.94
KOG0040|consensus 2399 99.91
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.87
smart00150101 SPEC Spectrin repeats. 99.59
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.59
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 99.53
smart00150101 SPEC Spectrin repeats. 99.1
KOG4286|consensus 966 99.05
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 99.01
KOG0516|consensus 1047 98.36
KOG4286|consensus 966 98.24
KOG4240|consensus 1025 98.12
KOG0035|consensus 890 96.46
KOG4240|consensus 1025 90.31
>KOG0517|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.8e-35  Score=299.67  Aligned_cols=252  Identities=27%  Similarity=0.448  Sum_probs=233.4

Q ss_pred             HHHhhchhhhhhhhcccccchHHHH--HHH--HHHH-hh----------------hhhcc-h----------hhhhhHHH
Q psy10634         16 VRSVHSLDGVSHIVYSVVLGKTIMT--KLL--HKLV-VD----------------IFLMY-K----------TSCFFPFH   63 (303)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~g~~l~~--~ll--~~~~-~~----------------~~~~~-~----------~~~~~l~~   63 (303)
                      ..+++||++++..+-|.+||++|++  +||  |.++ ++                .|..+ +          .++..|..
T Consensus       531 ~~~~d~meElk~~l~S~d~GkHL~gVedLLQkH~LlEadIn~~gerv~~~~a~a~~f~~~~~~~~cdp~vi~~R~~~le~  610 (2473)
T KOG0517|consen  531 LYTSDWMEELKQQLLSRDVGKHLLGVEDLLQKHDLLEADINAQGERVKALNAQALRFDSPKEYKPCDPQVIQERVAHLEQ  610 (2473)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999999976  888  6664 22                22221 0          57889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q psy10634         64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALA  143 (303)
Q Consensus        64 ~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~  143 (303)
                      .|.+|++++..||..|++++.+++|+++|.++++||.+++..+++.+.|.|++.|..++.+|++|+.++.+|.+....+.
T Consensus       611 ~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~~~~  690 (2473)
T KOG0517|consen  611 CYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAHLKQMI  690 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHH
Q psy10634        144 SRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQF  223 (303)
Q Consensus       144 ~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF  223 (303)
                      ..|+.|+..+||+++.|+.++.+++.+|+.|..++..|.++|.+|..+||                             |
T Consensus       691 ~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~Q-----------------------------f  741 (2473)
T KOG0517|consen  691 REGEELVAEGHPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQ-----------------------------F  741 (2473)
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------H
Confidence            99999999999999999999999999999999999999999999999888                             9


Q ss_pred             HHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHH
Q psy10634        224 YAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISK  297 (303)
Q Consensus       224 ~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~  297 (303)
                      +.|++++.+||.++...+++.++|.|..+++.|+++|.+++.+|.+|...|..|.+++..|.+. .+..|+|..
T Consensus       742 faDAdd~~sWl~d~~rlvss~d~G~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~-~~e~p~V~~  814 (2473)
T KOG0517|consen  742 FADADDAESWLRDALRLVSSEDVGHDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQE-SPEGPEVRQ  814 (2473)
T ss_pred             hccHHHHHHHHHHHHHhccchhcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-cCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999766 445555555

>KOG0517|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>KOG0516|consensus Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1u4q_A322 Crystal Structure Of Repeats 15, 16 And 17 Of Chick 7e-23
1cun_A213 Crystal Structure Of Repeats 16 And 17 Of Chicken B 2e-21
1u5p_A216 Crystal Structure Of Repeats 15 And 16 Of Chicken B 2e-15
1u5p_A216 Crystal Structure Of Repeats 15 And 16 Of Chicken B 4e-14
1aj3_A110 Solution Structure Of The Spectrin Repeat, Nmr, 20 2e-13
1aj3_A110 Solution Structure Of The Spectrin Repeat, Nmr, 20 3e-05
3fb2_A218 Crystal Structure Of The Human Brain Alpha Spectrin 2e-09
3kbu_A 326 Crystal Structure Of The Ankyrin Binding Domain Of 2e-05
3kbt_A 326 Crystal Structure Of The Ankyrin Binding Domain Of 2e-05
3lbx_A161 Crystal Structure Of The Erythrocyte Spectrin Tetra 2e-05
1owa_A156 Solution Structural Studies On Human Erythrocyte Al 3e-05
3lbx_B185 Crystal Structure Of The Erythrocyte Spectrin Tetra 9e-05
3lbx_B185 Crystal Structure Of The Erythrocyte Spectrin Tetra 1e-04
3f31_A149 Crystal Structure Of The N-Terminal Region Of Alpha 2e-04
3edv_A 323 Crystal Structure Of Repeats 14-16 Of Beta2-Spectri 5e-04
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken Brain Alpha Spectrin Length = 322 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 29/235 (12%)
Query: 64  RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
           R++ ++     RR  L ++  L+Q+ RD+DDE  W+ EK+ L  S D G  LT VQ+L+K
Sbjct: 90  RFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRK 149
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
           KH+ LE ELA+ EP +  +    K++S         I+   +   D    L+  A+ R  
Sbjct: 150 KHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQ 209
Query: 184 RLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHS 243
           RL ++LE Q                             QF A V E E W+ EK  ++ S
Sbjct: 210 RLEESLEYQ-----------------------------QFVANVEEEEAWINEKMTLVAS 240
Query: 244 SDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKK 298
            D+G    ++  L+KK E+ E +    +  V  +    + L+ +N+   +NI+ K
Sbjct: 241 EDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAK 295
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain Alpha Spectrin Length = 213 Back     alignment and structure
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain Alpha Spectrin Length = 216 Back     alignment and structure
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain Alpha Spectrin Length = 216 Back     alignment and structure
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20 Structures Length = 110 Back     alignment and structure
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20 Structures Length = 110 Back     alignment and structure
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin Repeats 15 And 16. Northeast Structural Genomics Consortium Target Hr5563a. Length = 218 Back     alignment and structure
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human Erythroid Beta Spectrin (Repeats 13-15) In Complex With The Spectrin Binding Domain Of Human Erythroid Ankyrin (Zu5-Ank), Emts Derivative Length = 326 Back     alignment and structure
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human Erythroid Beta Spectrin (Repeats 13-15) In Complex With The Spectrin Binding Domain Of Human Erythroid Ankyrin (Zu5-Ank) Length = 326 Back     alignment and structure
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin Tetramerization Domain Complex Length = 161 Back     alignment and structure
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha Spectrin N Terminal Tetramerization Domain Length = 156 Back     alignment and structure
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin Tetramerization Domain Complex Length = 185 Back     alignment and structure
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin Tetramerization Domain Complex Length = 185 Back     alignment and structure
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of Alphaii-Spectr Tetramerization Domain Length = 149 Back     alignment and structure
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 1e-44
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 1e-28
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 1e-20
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 6e-10
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 9e-41
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 5e-23
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 3e-36
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 1e-19
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 2e-35
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 9e-11
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 6e-34
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-16
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 8e-11
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 2e-33
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 1e-21
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 6e-32
3kbt_A 326 Beta-I spectrin, spectrin beta chain, erythrocyte; 9e-31
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 1e-30
3edv_A 323 Spectrin beta chain, brain 1; spectrin repeat, coi 9e-27
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 1e-17
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 2e-30
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 6e-27
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 2e-28
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-21
1s35_A 214 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-06
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 2e-28
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 9e-19
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 1e-27
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 2e-24
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 2e-26
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 4e-23
3pdy_A 210 Plectin; cytoskeleton, plakin, intermediate filame 1e-06
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 2e-23
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 1e-13
1quu_A 250 Human skeletal muscle alpha-actinin 2; triple-heli 2e-08
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 5e-22
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 2e-10
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 1e-20
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 4e-10
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 2e-20
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 5e-15
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 3e-18
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 4e-17
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 1e-11
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 2e-09
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 3e-09
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 2e-06
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
 Score =  153 bits (388), Expect = 1e-44
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 29/237 (12%)

Query: 63  HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
            R++ ++     RR  L ++  L+Q+ RD+DDE  W+ EK+ L  S D G  LT VQ+L+
Sbjct: 89  GRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLR 148

Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
           KKH+ LE ELA+ EP +  +    K++S         I+   +   D    L+  A+ R 
Sbjct: 149 KKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARG 208

Query: 183 LRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILH 242
            RL ++LE Q                             QF A V E E W+ EK  ++ 
Sbjct: 209 QRLEESLEYQ-----------------------------QFVANVEEEEAWINEKMTLVA 239

Query: 243 SSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
           S D+G    ++  L+KK E+ E +    +  V  +    + L+ +N+   +NI+ K 
Sbjct: 240 SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKM 296
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Length = 107 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Length = 107 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Length = 235 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 100.0
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 100.0
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 100.0
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 100.0
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 100.0
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 100.0
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.97
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.97
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.97
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.97
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.96
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.96
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.96
3kbt_A 326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.95
1u4q_A 322 Spectrin alpha chain, brain; alpha spectrin, three 99.95
3edv_A 323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.95
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.95
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.95
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.94
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.94
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.94
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.94
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.94
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.92
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.91
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.89
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.88
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.88
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.87
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.86
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.86
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.78
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.71
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.71
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.7
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.67
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.67
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.66
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.53
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.51
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.49
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 99.49
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.41
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.4
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.29
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 99.26
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.15
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.14
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 98.58
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 98.11
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-40  Score=318.85  Aligned_cols=247  Identities=17%  Similarity=0.222  Sum_probs=227.3

Q ss_pred             chhhhHHHHhhchhhhhhhhcccccchHHHH--HHH--HHHHhhhhhcc-------------hhhhhhHHHHHHHHHHHH
Q psy10634         10 SNVAWQVRSVHSLDGVSHIVYSVVLGKTIMT--KLL--HKLVVDIFLMY-------------KTSCFFPFHRYRSLQEPM   72 (303)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~--~ll--~~~~~~~~~~~-------------~~~~~~l~~~~~~L~~~~   72 (303)
                      +++....+++.||++++.+|.+.+||+||++  .++  |+.+...+...             .+.+..|..+|..|++++
T Consensus         6 ~~~r~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a~~~~~~~~L~~~y~~L~~~a   85 (450)
T 3r6n_A            6 FTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKAS   85 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence            4566778999999999999999999999966  666  66653222111             145678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhc
Q psy10634         73 QIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRS  152 (303)
Q Consensus        73 ~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~  152 (303)
                      ..|+++|+   .+++|+++|++++.||.++++.+.+.|||+++.++..++++|+.|+.+|.+|+++|+.|...|+.|+..
T Consensus        86 ~~Rr~~Le---~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~  162 (450)
T 3r6n_A           86 FERMDHLR---QLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLN  162 (450)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHc
Confidence            99999998   489999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHh
Q psy10634        153 AHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEV  232 (303)
Q Consensus       153 ~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~  232 (303)
                      +||+++.|++++++|+..|++|.+++.||+.+|+.+..+++                             |+.||+++++
T Consensus       163 ~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~Q-----------------------------F~~Da~Eaes  213 (450)
T 3r6n_A          163 QHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQ-----------------------------FFEEAQSTEA  213 (450)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------HHHHHHHHHH
Confidence            99999999999999999999999999999999999999888                             9999999999


Q ss_pred             HHHhhhhhhcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy10634        233 WLKEKKPILHSS---DFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRN  288 (303)
Q Consensus       233 WL~e~~~~l~s~---~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~  288 (303)
                      ||.+++..+.++   ++|.|+.+++.|+++|++++++|..++.+|.+|..+|+.|+|..
T Consensus       214 WL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~~l~  272 (450)
T 3r6n_A          214 YLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLK  272 (450)
T ss_dssp             HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999875   88999999999999999999999999999999999999998754
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d1cuna2104 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken 3e-22
d1cuna2104 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken 3e-14
d2spca_107 a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. 1e-20
d2spca_107 a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. 6e-14
d1u5pa2101 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke 2e-20
d1u5pa2101 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke 1e-13
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 1e-19
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 2e-11
d1u5pa1110 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke 2e-19
d1u5pa1110 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke 1e-12
d1s35a2105 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human ( 5e-17
d1s35a2105 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human ( 2e-10
d1owaa_156 a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sap 3e-16
d1quua2124 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sap 2e-13
d1quua2124 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sap 1e-08
d1s35a1106 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human ( 4e-12
d1s35a1106 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human ( 2e-06
d1hcia4114 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sap 5e-12
d1hcia4114 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sap 3e-07
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 86.9 bits (215), Expect = 3e-22
 Identities = 29/103 (28%), Positives = 55/103 (53%)

Query: 87  QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRA 146
           Q++ +V++E  W+ EK  L  S D G++L A+Q L KKH+A ET+    +  V+ + +  
Sbjct: 1   QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG 60

Query: 147 KQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDAL 189
           + + +  +     I      L+ K++ L  AA+ R+ +L +  
Sbjct: 61  EDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 103
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104 Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107 Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107 Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101 Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101 Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110 Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110 Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.76
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.75
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.74
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.73
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.72
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.7
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.64
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.58
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.5
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.45
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.43
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.42
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.32
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.29
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.21
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.13
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.11
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 96.69
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 92.97
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.6e-18  Score=129.68  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy10634         85 LYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGAT  164 (303)
Q Consensus        85 l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~  164 (303)
                      +++|.++|+++..||.+++..+.+.++|.++.+|+.++++|+.|+++|.+++++|..+...|+.|+..+||+++.|..++
T Consensus         2 ~q~F~~d~~~~~~Wi~~~e~~l~~~~~g~dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~   81 (105)
T d1s35a2           2 FQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKV   81 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10634        165 SALQDKLASLRNAASVRRLRLLD  187 (303)
Q Consensus       165 ~~L~~~W~~L~~l~~~r~~~L~~  187 (303)
                      ..|..+|..|.+.+..|+..|++
T Consensus        82 ~~l~~rw~~l~~~~~~r~~~L~d  104 (105)
T d1s35a2          82 QLIEDRHRKNNEKAQEASVLLRD  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999974
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure