Psyllid ID: psy10677
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | 2.2.26 [Sep-21-2011] | |||||||
| A6RGE3 | 542 | ATP-dependent RNA helicas | N/A | N/A | 0.454 | 0.265 | 0.396 | 1e-27 | |
| A1C6C4 | 549 | ATP-dependent RNA helicas | N/A | N/A | 0.454 | 0.262 | 0.396 | 1e-27 | |
| A2QC74 | 565 | ATP-dependent RNA helicas | yes | N/A | 0.454 | 0.254 | 0.389 | 2e-27 | |
| Q1DP69 | 545 | ATP-dependent RNA helicas | N/A | N/A | 0.454 | 0.264 | 0.389 | 2e-27 | |
| Q4X195 | 547 | ATP-dependent RNA helicas | yes | N/A | 0.463 | 0.268 | 0.382 | 5e-27 | |
| A4QSS5 | 548 | ATP-dependent RNA helicas | N/A | N/A | 0.454 | 0.262 | 0.389 | 9e-27 | |
| A1DGZ7 | 545 | ATP-dependent RNA helicas | N/A | N/A | 0.454 | 0.264 | 0.383 | 2e-26 | |
| Q5B0J9 | 563 | ATP-dependent RNA helicas | yes | N/A | 0.454 | 0.255 | 0.389 | 3e-26 | |
| Q7SBC6 | 562 | ATP-dependent RNA helicas | N/A | N/A | 0.457 | 0.258 | 0.391 | 3e-26 | |
| A7E449 | 572 | ATP-dependent RNA helicas | N/A | N/A | 0.473 | 0.262 | 0.392 | 4e-26 |
| >sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
++ E+D+FRKEH IT+ G+N+P+PV+T DE P Y++ +K + +
Sbjct: 99 RSTHEVDAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGF---------ARPT 149
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+++ W P+ + + + AE S TY LPA+ HI P L GDGPI LV
Sbjct: 150 AIQAQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLV 203
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQ I+ F ++ RIR+ C+YGG K Q+
Sbjct: 204 LAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Ajellomyces capsulata (strain NAm1 / WU24) (taxid: 339724) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
+++ E+D FR+EH +T+ G+N+P+PV+T DE P Y+L +K + ++
Sbjct: 99 RSQREVDEFRQEHKMTVQGKNVPRPVETFDEAGFPQYVLSEVKSQGF---------ERPT 149
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI LV
Sbjct: 150 AIQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLV 203
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQ I+ F ++ RIR+ C+YGG K Q+
Sbjct: 204 LAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
+++ ++D FRK+H + + G+N+P+PV+T DE P Y+L +K + +
Sbjct: 111 RSQRDVDEFRKKHEMAVQGRNVPRPVETFDEAGFPQYVLSEVKAQGFDRPTA-------- 162
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI L+
Sbjct: 163 -IQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLI 215
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 216 LAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis (strain RS) GN=DBP2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
++ +++++FRKEH +T+ G+N+P+PV+T DE P Y++ +K + K
Sbjct: 102 RSAQDVEAFRKEHEMTVYGKNVPRPVETFDEAGFPQYVISEVKAQGF---------AKPT 152
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI LV
Sbjct: 153 PIQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLV 206
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA I+ F ++ RIR+ C+YGG + Q+
Sbjct: 207 LAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 245
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Coccidioides immitis (strain RS) (taxid: 246410) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 15/162 (9%)
Query: 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNK 165
+ +++ E++ FRK+H +T+ G+N+P+PV+ DE P Y+L +K + +
Sbjct: 92 VAARSEREVEEFRKKHEMTVQGRNVPRPVENFDEAGFPQYVLSEVKAQGF---------E 142
Query: 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPI 225
+ +S+ W P+ + + + AE S TY LPA+ HI P L GDGPI
Sbjct: 143 RPTAIQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 196
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
L+LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 197 VLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 238
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A4QSS5|DBP2_MAGO7 ATP-dependent RNA helicase DBP2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=DBP2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
+++ E+D FR+EH++ + G ++PKPV+T DE P Y++ +K +
Sbjct: 99 RSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTA-------- 150
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI L+
Sbjct: 151 -IQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLI 203
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 204 LAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 242
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
+++ E++ FRK+H +T+ G+N+P+PV+ DE P Y+L +K +
Sbjct: 93 RSEREVEEFRKKHEMTVQGRNVPRPVENFDEAGFPQYVLSEVKAQGFERPTA-------- 144
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI L+
Sbjct: 145 -IQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLI 197
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQ IS F ++ RIR+ C+YGG K Q+
Sbjct: 198 LAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQI 236
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
+++ E+D FRK+ +T+ G+++P+PV+T DE P Y+L +K + +K
Sbjct: 114 RSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGF---------EKPT 164
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S +Y LPA+ HI P L GDGPI L+
Sbjct: 165 AIQSQGW--PMALSGRDVVGI----AETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLI 218
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 219 LAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 257
|
ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dbp-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 92/171 (53%), Gaps = 26/171 (15%)
Query: 101 PSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMK----PKTTN 156
PSV + ++ E+D FR +H+I + G N+PKPV+T DE P Y++ +K P T
Sbjct: 101 PSVAN---RSPAEVDKFRADHSIAVFGNNVPKPVETFDEAGFPRYVMDEVKAQGFPAPTA 157
Query: 157 NENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP 216
+S+ W P+ + + + AE S TY LPA+ HI P
Sbjct: 158 -------------IQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQP 198
Query: 217 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
L GDGPI L+LAPTRELA QIQ IS F ++ RIR+ C+YGG K Q+
Sbjct: 199 LLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 249
|
ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 18/168 (10%)
Query: 100 DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159
DP V +++E++ FR +HNI + G NIPKPV+T DE P+Y++ +K +
Sbjct: 117 DPVV---AARSEEDVAKFRAQHNIAVQGPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPT 173
Query: 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219
+S+ W P+ + + + AE S TY LPA+ HI P L
Sbjct: 174 ---------PIQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLA 218
Query: 220 EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
GDGPI LVLAPTRELA QIQ I+ F ++ RIR+ C+YGG K Q+
Sbjct: 219 PGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 266
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| 169610529 | 668 | hypothetical protein SNOG_08367 [Phaeosp | 0.473 | 0.224 | 0.422 | 9e-28 | |
| 449296632 | 485 | hypothetical protein BAUCODRAFT_95810 [B | 0.473 | 0.309 | 0.398 | 2e-27 | |
| 242787406 | 543 | RNA helicase (Dbp), putative [Talaromyce | 0.454 | 0.265 | 0.402 | 1e-26 | |
| 225555683 | 544 | ATP-dependent RNA helicase DBP2 [Ajellom | 0.454 | 0.264 | 0.402 | 1e-26 | |
| 325091997 | 544 | ATP-dependent RNA helicase DBP2 [Ajellom | 0.454 | 0.264 | 0.402 | 1e-26 | |
| 398406623 | 529 | hypothetical protein MYCGRDRAFT_36977 [Z | 0.473 | 0.283 | 0.392 | 2e-26 | |
| 407927140 | 462 | RNA helicase ATP-dependent DEAD-box cons | 0.463 | 0.318 | 0.401 | 2e-26 | |
| 396490503 | 1226 | hypothetical protein LEMA_P074610.1 [Lep | 0.473 | 0.122 | 0.410 | 2e-26 | |
| 427779853 | 686 | Putative atp-dependent rna helicase [Rhi | 0.470 | 0.217 | 0.383 | 2e-26 | |
| 427781447 | 681 | Putative atp-dependent rna helicase [Rhi | 0.470 | 0.218 | 0.383 | 2e-26 |
| >gi|169610529|ref|XP_001798683.1| hypothetical protein SNOG_08367 [Phaeosphaeria nodorum SN15] gi|160702090|gb|EAT84643.2| hypothetical protein SNOG_08367 [Phaeosphaeria nodorum SN15] | Back alignment and taxonomy information |
|---|
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 18/168 (10%)
Query: 100 DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159
DP+V +T EE+D++RKEH +T+ G NIPKPV T DE PSY++ +K + +
Sbjct: 330 DPAVT---ARTPEEVDAYRKEHQMTVQGTNIPKPVTTFDEAGFPSYVMSEVKAQGFD--- 383
Query: 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219
K +++ W P+ + + V AE S TY LPA+ HI P L
Sbjct: 384 ------KPTAIQAQGW--PMALSGRDVVGV----AETGSGKTLTYCLPAIVHINAQPLLA 431
Query: 220 EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
GDGPI L+LAPTRELA QIQ IS F ++ RIR+ C+YGG K Q+
Sbjct: 432 PGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 479
|
Source: Phaeosphaeria nodorum SN15 Species: Parastagonospora nodorum Genus: Parastagonospora Family: Phaeosphaeriaceae Order: Pleosporales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|449296632|gb|EMC92651.1| hypothetical protein BAUCODRAFT_95810 [Baudoinia compniacensis UAMH 10762] | Back alignment and taxonomy information |
|---|
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 18/168 (10%)
Query: 100 DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159
DP+V +++ E+D+FR+EH IT+ G+++PKPV+T DE P Y++ NE
Sbjct: 29 DPAV---AARSQAEVDAFRREHQITVQGRDVPKPVETFDEAGFPGYVM---------NEV 76
Query: 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219
K +S+ W P+ + + + AE S TY LPA+ HI P L
Sbjct: 77 KAQGFSKPTAIQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLA 130
Query: 220 EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
+GDGPI L+LAPTRELA QIQ +S F ++ RIR+ C+YGG K Q+
Sbjct: 131 QGDGPIVLILAPTRELAVQIQEEVSKFGKSSRIRNTCVYGGVPKGGQI 178
|
Source: Baudoinia compniacensis UAMH 10762 Species: Baudoinia compniacensis Genus: Baudoinia Family: Teratosphaeriaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500] gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500] | Back alignment and taxonomy information |
|---|
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
++++++D+FRKEH + + G+N+P+PV+T DE P+Y+L +K + K
Sbjct: 90 RSQKDVDAFRKEHQMAVTGRNVPRPVETFDEAGFPNYVLSEVKAQGF---------AKPT 140
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI L+
Sbjct: 141 AIQSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLSPGDGPIVLI 194
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQ IS F R+ RIR+ C+YGG K Q+
Sbjct: 195 LAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 233
|
Source: Talaromyces stipitatus ATCC 10500 Species: Talaromyces stipitatus Genus: Talaromyces Family: Trichocomaceae Order: Eurotiales Class: Eurotiomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR] | Back alignment and taxonomy information |
|---|
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
++ +E+D+FRKEH IT+ G+N+P+PV+T DE P Y++ +K + +
Sbjct: 100 RSTQEVDAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGF---------ARPT 150
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+++ W P+ + + + AE S TY LPA+ HI P L GDGPI LV
Sbjct: 151 AIQAQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLV 204
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA I+ F ++ RIR+ C+YGG K Q+
Sbjct: 205 LAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243
|
Source: Ajellomyces capsulatus G186AR Species: Ajellomyces capsulatus Genus: Ajellomyces Family: Ajellomycetaceae Order: Onygenales Class: Eurotiomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88] | Back alignment and taxonomy information |
|---|
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 15/159 (9%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
++ +E+D+FRKEH IT+ G+N+P+PV+T DE P Y++ +K +
Sbjct: 100 RSTQEVDAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTA-------- 151
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+++ W P+ + + + AE S TY LPA+ HI P L GDGPI LV
Sbjct: 152 -IQAQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLV 204
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA I+ F ++ RIR+ C+YGG K Q+
Sbjct: 205 LAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243
|
Source: Ajellomyces capsulatus H88 Species: Ajellomyces capsulatus Genus: Ajellomyces Family: Ajellomycetaceae Order: Onygenales Class: Eurotiomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|398406623|ref|XP_003854777.1| hypothetical protein MYCGRDRAFT_36977 [Zymoseptoria tritici IPO323] gi|339474661|gb|EGP89753.1| hypothetical protein MYCGRDRAFT_36977 [Zymoseptoria tritici IPO323] | Back alignment and taxonomy information |
|---|
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 18/168 (10%)
Query: 100 DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159
DP+V +++ E+D FRK+ IT+ G+++PKPV+T DE P+Y++ +K + +
Sbjct: 73 DPAV---AARSQAEVDEFRKKAQITIQGRDVPKPVETFDEAGFPNYVMSEVKAQGFD--- 126
Query: 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219
K +S+ W P++ + + V AE S TY LPA+ HI P L
Sbjct: 127 ------KPTAIQSQGW--PMSLSGRDVVGV----AETGSGKTLTYTLPAIVHINAQPLLA 174
Query: 220 EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
+GDGPI L+LAPTRELA QIQ +S F ++ RIR+ C+YGG K Q+
Sbjct: 175 QGDGPIVLILAPTRELAVQIQEEVSKFGKSSRIRNTCVYGGVPKGGQI 222
|
Source: Zymoseptoria tritici IPO323 Species: Zymoseptoria tritici Genus: Zymoseptoria Family: Mycosphaerellaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|407927140|gb|EKG20043.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina phaseolina MS6] | Back alignment and taxonomy information |
|---|
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 91/162 (56%), Gaps = 15/162 (9%)
Query: 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNK 165
+ +T +E+D +RK H I + G+++PKPV T DE PSY++ NE +
Sbjct: 32 VAARTAQEVDEYRKAHQIAVQGRDVPKPVTTFDEAGFPSYVM---------NEVKAQGFE 82
Query: 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPI 225
K +++ W P+ + + + AE S TY LPA+ HI P L GDGPI
Sbjct: 83 KPTAIQAQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 136
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
L+LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 137 VLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGGQI 178
|
Source: Macrophomina phaseolina MS6 Species: Macrophomina phaseolina Genus: Macrophomina Family: Botryosphaeriaceae Order: Botryosphaeriales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|396490503|ref|XP_003843351.1| hypothetical protein LEMA_P074610.1 [Leptosphaeria maculans JN3] gi|312219930|emb|CBX99872.1| hypothetical protein LEMA_P074610.1 [Leptosphaeria maculans JN3] | Back alignment and taxonomy information |
|---|
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 18/168 (10%)
Query: 100 DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159
DP+V ++ E++++RKEH +T+ G+NIPKPV T DE PSY++ NE
Sbjct: 785 DPAVT---ARSDAEVEAYRKEHQMTVQGKNIPKPVTTFDEAGFPSYVM---------NEV 832
Query: 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219
K +++ W P+ + + V AE S TY LPA+ HI P L
Sbjct: 833 KAQGFAKPTAIQAQGW--PMALSGRDVVGV----AETGSGKTLTYCLPAIVHINAQPLLA 886
Query: 220 EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
GDGPI L+LAPTRELA QIQ IS F ++ RIR+ C+YGG K Q+
Sbjct: 887 PGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 934
|
Source: Leptosphaeria maculans JN3 Species: Leptosphaeria maculans Genus: Leptosphaeria Family: Leptosphaeriaceae Order: Pleosporales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|427779853|gb|JAA55378.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 18/167 (10%)
Query: 101 PSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENN 160
P+ H + K E+D+FRK+H+IT+ G+++P P+ T +E N+P + + ++ N
Sbjct: 63 PTTAH---RPKHEVDAFRKQHDITIRGKDVPNPILTFEEANLPDFCMSAIRQAQYNTPT- 118
Query: 161 HNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220
+++ W P+ + + + A+ S YILPA+ HI P LE
Sbjct: 119 --------PIQAQGW--PIALSGRDMVGI----AQTGSGKTLAYILPAILHISHQPYLER 164
Query: 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
GDGPIALV+APTRELAQQIQ V S F R RIR+ C++GG K Q+
Sbjct: 165 GDGPIALVVAPTRELAQQIQQVASEFGRASRIRNTCVFGGAPKGPQI 211
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427781447|gb|JAA56175.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 18/167 (10%)
Query: 101 PSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENN 160
P+ H + K E+D+FRK+H+IT+ G+++P P+ T +E N+P + + ++ N
Sbjct: 58 PTTAH---RPKHEVDAFRKQHDITIRGKDVPNPILTFEEANLPDFCMSAIRQAQYNTPT- 113
Query: 161 HNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220
+++ W P+ + + + A+ S YILPA+ HI P LE
Sbjct: 114 --------PIQAQGW--PIALSGRDMVGI----AQTGSGKTLAYILPAILHISHQPYLER 159
Query: 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
GDGPIALV+APTRELAQQIQ V S F R RIR+ C++GG K Q+
Sbjct: 160 GDGPIALVVAPTRELAQQIQQVASEFGRASRIRNTCVFGGAPKGPQI 206
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| UNIPROTKB|A4QSS5 | 548 | DBP2 "ATP-dependent RNA helica | 0.454 | 0.262 | 0.383 | 3.7e-24 | |
| ASPGD|ASPL0000006660 | 563 | AN5931 [Emericella nidulans (t | 0.454 | 0.255 | 0.377 | 3.9e-23 | |
| SGD|S000005056 | 546 | DBP2 "ATP-dependent RNA helica | 0.473 | 0.274 | 0.365 | 3.3e-21 | |
| UNIPROTKB|J3QRQ7 | 212 | DDX5 "Probable ATP-dependent R | 0.463 | 0.693 | 0.345 | 4.9e-21 | |
| MGI|MGI:105037 | 614 | Ddx5 "DEAD (Asp-Glu-Ala-Asp) b | 0.463 | 0.239 | 0.351 | 1.5e-20 | |
| RGD|619906 | 615 | Ddx5 "DEAD (Asp-Glu-Ala-Asp) b | 0.463 | 0.239 | 0.351 | 1.5e-20 | |
| TAIR|locus:2035741 | 501 | RH20 "RNA helicase 20" [Arabid | 0.451 | 0.285 | 0.367 | 3.2e-20 | |
| CGD|CAL0003204 | 562 | DBP2 [Candida albicans (taxid: | 0.454 | 0.256 | 0.364 | 3.4e-20 | |
| GENEDB_PFALCIPARUM|PF14_0437 | 527 | PF14_0437 "helicase, truncated | 0.457 | 0.275 | 0.366 | 3.7e-20 | |
| UNIPROTKB|Q8IL13 | 527 | PF14_0437 "Helicase, putative" | 0.457 | 0.275 | 0.366 | 3.7e-20 |
| UNIPROTKB|A4QSS5 DBP2 "ATP-dependent RNA helicase DBP2" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 61/159 (38%), Positives = 88/159 (55%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXXXCG 168
+++ E+D FR+EH++ + G ++PKPV+T DE P Y++ +
Sbjct: 99 RSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAI------- 151
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S TY LPA+ HI P L GDGPI L+
Sbjct: 152 --QSQGW--PMALSGRDVVGI----AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLI 203
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 204 LAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 242
|
|
| ASPGD|ASPL0000006660 AN5931 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 60/159 (37%), Positives = 88/159 (55%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXXXCG 168
+++ E+D FRK+ +T+ G+++P+PV+T DE P Y+L +
Sbjct: 114 RSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAI------- 166
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+S+ W P+ + + + AE S +Y LPA+ HI P L GDGPI L+
Sbjct: 167 --QSQGW--PMALSGRDVVGI----AETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLI 218
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQA IS F ++ RIR+ C+YGG K Q+
Sbjct: 219 LAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 257
|
|
| SGD|S000005056 DBP2 "ATP-dependent RNA helicase of the DEAD-box protein family" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 61/167 (36%), Positives = 83/167 (49%)
Query: 103 VNH--LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXX 160
V H ++ ++ EI FRKE+ +T+ G +IPKP+ T DE P Y+L +
Sbjct: 79 VEHESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTG 138
Query: 161 XXXXXXCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220
C + W P+ + + + A S +Y LP + HI P L
Sbjct: 139 IQ----C-----QGW--PMALSGRDMVGI----AATGSGKTLSYCLPGIVHINAQPLLAP 183
Query: 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
GDGPI LVLAPTRELA QIQ S F + RIR+ C+YGG K Q+
Sbjct: 184 GDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230
|
|
| UNIPROTKB|J3QRQ7 DDX5 "Probable ATP-dependent RNA helicase DDX5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 56/162 (34%), Positives = 85/162 (52%)
Query: 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXX 165
L +T +E++++R+ IT+ G N PKPV E N P+ ++ +
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI---- 120
Query: 166 XCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPI 225
+++ W + L+ + V A+ S +Y+LPA+ HI P LE GDGPI
Sbjct: 121 -----QAQGWPVALS--GLDMVGV----AQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 169
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LVLAPTRELAQQ+Q V + + R R++ C+YGG K Q+
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 211
|
|
| MGI|MGI:105037 Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 57/162 (35%), Positives = 85/162 (52%)
Query: 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXX 165
L +T +E+D++R+ IT+ G N PKPV E N P+ ++ +
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI---- 120
Query: 166 XCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPI 225
+++ W + L+ + V A+ S +Y+LPA+ HI P LE GDGPI
Sbjct: 121 -----QAQGWPVALS--GLDMVGV----AQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 169
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LVLAPTRELAQQ+Q V + + R R++ C+YGG K Q+
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 211
|
|
| RGD|619906 Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 57/162 (35%), Positives = 85/162 (52%)
Query: 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXX 165
L +T +E+D++R+ IT+ G N PKPV E N P+ ++ +
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI---- 120
Query: 166 XCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPI 225
+++ W + L+ + V A+ S +Y+LPA+ HI P LE GDGPI
Sbjct: 121 -----QAQGWPVALS--GLDMVGV----AQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 169
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LVLAPTRELAQQ+Q V + + R R++ C+YGG K Q+
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 211
|
|
| TAIR|locus:2035741 RH20 "RNA helicase 20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 58/158 (36%), Positives = 82/158 (51%)
Query: 110 TKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXXXCGD 169
T E++ +RK IT+ G++IPKPVK+ + P Y+L +
Sbjct: 74 TDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPI-------- 125
Query: 170 KESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVL 229
+S+ W P+ + + I + AE S +Y+LPA+ H+ P L GDGPI LVL
Sbjct: 126 -QSQGW--PMAMKGRDLIGI----AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVL 178
Query: 230 APTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
APTRELA QIQ S F + +I+ C+YGG K QV
Sbjct: 179 APTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQV 216
|
|
| CGD|CAL0003204 DBP2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 58/159 (36%), Positives = 83/159 (52%)
Query: 109 KTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXXXCG 168
++ +I+ FRKE+ +T+ G +IP P+ T DE P Y+L + C
Sbjct: 101 RSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQ----C- 155
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+ W P+ + I + A S +Y LP++ HI P+L+ GDGPI LV
Sbjct: 156 ----QGW--PMALSGRDMIGI----AATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLV 205
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
LAPTRELA QIQ S F ++ RIR+ C+YGG K Q+
Sbjct: 206 LAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 244
|
|
| GENEDB_PFALCIPARUM|PF14_0437 PF14_0437 "helicase, truncated, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 59/161 (36%), Positives = 84/161 (52%)
Query: 112 EEIDSFRKEHNITLI-GQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXXXCGDK 170
+E+ R +H IT++ G+N+PKPV ++++ P Y++ +
Sbjct: 89 KEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPI--------- 139
Query: 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA 230
+ + W I L+ K I KAE S +ILPA HIL P L+ GDGPI LVLA
Sbjct: 140 QIQGWPIALS--GKDMIG----KAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLA 193
Query: 231 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
PTRELA+QI+ FS +IR+ C YGG K Q+ L+
Sbjct: 194 PTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALK 234
|
|
| UNIPROTKB|Q8IL13 PF14_0437 "Helicase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 59/161 (36%), Positives = 84/161 (52%)
Query: 112 EEIDSFRKEHNITLI-GQNIPKPVKTLDETNIPSYILGPMXXXXXXXXXXXXXXXXCGDK 170
+E+ R +H IT++ G+N+PKPV ++++ P Y++ +
Sbjct: 89 KEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPI--------- 139
Query: 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA 230
+ + W I L+ K I KAE S +ILPA HIL P L+ GDGPI LVLA
Sbjct: 140 QIQGWPIALS--GKDMIG----KAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLA 193
Query: 231 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
PTRELA+QI+ FS +IR+ C YGG K Q+ L+
Sbjct: 194 PTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALK 234
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 317 | |||
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 4e-31 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-16 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 9e-14 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-11 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-10 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-08 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 4e-07 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-06 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-06 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 8e-06 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-05 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 8e-05 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-04 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 2e-04 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 5e-04 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 6e-04 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 7e-04 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 4e-31
Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 110 TKEEIDSFRKEHNITLI-GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
+ +E+D RKE IT+I G+N+PKPV + + T+ P YIL +K + +
Sbjct: 104 SSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLK---------NAGFTEPT 154
Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
+ + W I L+ + I AE S ++LPA+ HI P L GDGPI LV
Sbjct: 155 PIQVQGWPIALS--GRDMIG----IAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208
Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
LAPTRELA+QI+ + F + +IR+ YGG K Q+ LR
Sbjct: 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR 251
|
Length = 545 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-16
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261
+++P L + PK DGP AL+LAPTRELA QI V + ++ +YGGT
Sbjct: 51 AAFLIPILEKLDPSPKK---DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGT 107
Query: 262 SKMYQVILLR 271
S Q+ L+
Sbjct: 108 SIDKQIRKLK 117
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 9e-14
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 1 MWSATWPREIQKLAKEFLSD-PIQLNVGSANLAANPNIKQFVEICHEYEKPAK 52
MWSATWP+E+Q LA++ + P+ +NVGS +L A NIKQ V + E+EK K
Sbjct: 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK 365
|
Length = 545 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR-TMRIRHACLYGG 260
++LP L ILK E AL+LAPTRELA QI + + +R A +YGG
Sbjct: 81 AAFLLPLLQKILK---SVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGG 137
Query: 261 TSKMYQVILLR 271
S Q+ L+
Sbjct: 138 VSIRKQIEALK 148
|
Length = 513 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
++LP L +L + GP ALVLAPTRELA+QI + + + +R A L GGTS
Sbjct: 31 FLLPILQALLP-----KKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTGGTSL 85
Query: 264 MYQVILLR 271
Q L+
Sbjct: 86 KEQARKLK 93
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261
+LPAL + + G G LVL PTRELA+Q + ++ ++ LYGG
Sbjct: 39 LAALLPALEALKR------GKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGD 92
Query: 262 SKMYQ 266
SK Q
Sbjct: 93 SKREQ 97
|
Length = 201 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLA-ANPNIKQFVEICHEYEK 49
++SAT P +I++LA+ +L+DP+++ V L IKQF E+
Sbjct: 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEE 259
|
Length = 513 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 202 FTYILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 260
FT LP L H++ +G P+ AL+L PTRELA QI + +S+ + IR ++GG
Sbjct: 55 FT--LPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGG 112
Query: 261 TSKMYQVILLR 271
S Q++ LR
Sbjct: 113 VSINPQMMKLR 123
|
Length = 456 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIRHACLYGG 260
+LP L + G LVLAPTRELA Q+ + +F +++ L GG
Sbjct: 15 LAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGEGIKV--GYLIGG 66
Query: 261 TSKMYQVILLR 271
TS Q LL
Sbjct: 67 TSIKQQEKLLS 77
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTS 262
AL+LAPTRELAQQIQ V+ +++R HAC+ GGT
Sbjct: 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACV-GGTV 135
|
Length = 401 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 194 AEVQSRSVFTYILPALYHI---LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 250
A+ S + LP L+++ LK P++ LVLAPTRELA Q+ ++ FS+ M
Sbjct: 50 AQTGSGKTAAFSLPLLHNLDPELKAPQI--------LVLAPTRELAVQVAEAMTDFSKHM 101
Query: 251 R-IRHACLYGGTSKMYQVILLR 271
R + LYGG Q+ LR
Sbjct: 102 RGVNVVALYGGQRYDVQLRALR 123
|
Length = 629 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239
++LPAL H+L P+ + G P L+L PTRELA Q+
Sbjct: 55 FLLPALQHLLDFPRRKSGP-PRILILTPTRELAMQV 89
|
Length = 434 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLN 25
++SAT P+E++ LA++FL +P+++
Sbjct: 179 LFSATMPKEVRDLARKFLRNPVRIL 203
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-FVEI 43
SAT+P I +++ F DP+++ V S + P I+Q F E+
Sbjct: 185 SATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEV 224
|
Length = 460 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 193 KAEVQSRSVFTYILPALYHILKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTM 250
+A+ + +++ + +L P L + + P AL+LAPTRELA QI F +
Sbjct: 52 QAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111
Query: 251 RIRHACLYGGTSKMYQVILLR 271
+R A +YGG Q LL+
Sbjct: 112 GLRFALVYGGVDYDKQRELLQ 132
|
Length = 572 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 211 HILKMPKLEEG--DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 262
++L P E+ + P AL++APTRELA QI A ++ ++ YGG
Sbjct: 69 YLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDG 122
|
Length = 423 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 29/165 (17%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 110 TKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGD 169
+ + + R++ I + G+ +P P+ + +P +L +
Sbjct: 96 SSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNL------------------- 136
Query: 170 KESKNWTIPLNFQAKKFISVLQKK-----AEVQSRSVFTYILPALYH--ILKMPKLEEGD 222
E+ + P Q + + L + A+ S ++++P + ++ E
Sbjct: 137 -ETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195
Query: 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
P+A+VL PTREL Q++ + + + + A + GG + Q+
Sbjct: 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL 240
|
Length = 518 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| KOG0339|consensus | 731 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0334|consensus | 997 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| KOG0347|consensus | 731 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.97 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.97 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.97 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.97 | |
| KOG0328|consensus | 400 | 99.97 | ||
| KOG0326|consensus | 459 | 99.97 | ||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.97 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.96 | |
| KOG0337|consensus | 529 | 99.95 | ||
| KOG0327|consensus | 397 | 99.95 | ||
| KOG0350|consensus | 620 | 99.95 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 99.94 | |
| KOG0344|consensus | 593 | 99.94 | ||
| KOG4284|consensus | 980 | 99.93 | ||
| KOG0332|consensus | 477 | 99.92 | ||
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.92 | |
| KOG0329|consensus | 387 | 99.92 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.92 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.89 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.89 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.87 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.87 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.85 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.85 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.84 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.84 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.84 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.83 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.81 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.8 | |
| KOG0328|consensus | 400 | 99.8 | ||
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.8 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.8 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.79 | |
| KOG0331|consensus | 519 | 99.78 | ||
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.76 | |
| KOG0349|consensus | 725 | 99.76 | ||
| KOG0336|consensus | 629 | 99.75 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.75 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.75 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.73 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.73 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.72 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.71 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.7 | |
| KOG0330|consensus | 476 | 99.7 | ||
| KOG0335|consensus | 482 | 99.7 | ||
| KOG0333|consensus | 673 | 99.69 | ||
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.68 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.67 | |
| KOG0341|consensus | 610 | 99.65 | ||
| KOG0326|consensus | 459 | 99.64 | ||
| KOG0332|consensus | 477 | 99.62 | ||
| KOG0344|consensus | 593 | 99.6 | ||
| KOG0327|consensus | 397 | 99.6 | ||
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.59 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.58 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.57 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.54 | |
| KOG0342|consensus | 543 | 99.54 | ||
| KOG0952|consensus | 1230 | 99.53 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.51 | |
| KOG0338|consensus | 691 | 99.5 | ||
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.5 | |
| KOG0345|consensus | 567 | 99.49 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.48 | |
| KOG0339|consensus | 731 | 99.47 | ||
| KOG0334|consensus | 997 | 99.47 | ||
| KOG0346|consensus | 569 | 99.44 | ||
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.44 | |
| PTZ00110 | 545 | helicase; Provisional | 99.43 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.42 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.42 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.42 | |
| KOG0343|consensus | 758 | 99.41 | ||
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.39 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.39 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.34 | |
| KOG0340|consensus | 442 | 99.33 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.31 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.31 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.27 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.26 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.25 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.25 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.21 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.19 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.16 | |
| KOG0951|consensus | 1674 | 99.13 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.13 | |
| KOG0329|consensus | 387 | 99.12 | ||
| KOG4284|consensus | 980 | 99.12 | ||
| KOG0348|consensus | 708 | 99.09 | ||
| KOG0354|consensus | 746 | 99.06 | ||
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.06 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.06 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.02 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.01 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.98 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 98.96 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.95 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 98.9 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.89 | |
| KOG0337|consensus | 529 | 98.85 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.79 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.77 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.74 | |
| KOG0350|consensus | 620 | 98.74 | ||
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.72 | |
| KOG0352|consensus | 641 | 98.69 | ||
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.69 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 98.67 | |
| KOG0951|consensus | 1674 | 98.65 | ||
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.61 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.61 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.59 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.58 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 98.58 | |
| KOG0353|consensus | 695 | 98.57 | ||
| KOG0351|consensus | 941 | 98.56 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.55 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 98.5 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 98.49 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 98.47 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.46 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 98.46 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.34 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.33 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 98.32 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 98.3 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 98.26 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.11 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.1 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.09 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 97.98 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 97.92 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.92 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.91 | |
| KOG0347|consensus | 731 | 97.88 | ||
| KOG0349|consensus | 725 | 97.87 | ||
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 97.84 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 97.84 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 97.83 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 97.81 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 97.78 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.76 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 97.69 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 97.68 | |
| KOG0947|consensus | 1248 | 97.65 | ||
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.63 | |
| KOG0952|consensus | 1230 | 97.58 | ||
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 97.57 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.54 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 97.52 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.49 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.39 | |
| KOG0948|consensus | 1041 | 97.31 | ||
| KOG0949|consensus | 1330 | 97.09 | ||
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.09 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 97.08 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.06 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 97.03 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 96.96 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 96.94 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 96.93 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.9 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.89 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 96.84 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 96.72 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 96.7 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.67 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.58 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.54 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 96.52 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 96.45 | |
| KOG0390|consensus | 776 | 96.26 | ||
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 96.13 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.08 | |
| KOG1803|consensus | 649 | 95.99 | ||
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 95.89 | |
| KOG0950|consensus | 1008 | 95.81 | ||
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 95.8 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 95.77 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 95.77 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 95.74 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.69 | |
| KOG1802|consensus | 935 | 95.65 | ||
| KOG2340|consensus | 698 | 95.42 | ||
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 95.25 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 95.23 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 95.1 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 95.05 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 95.02 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 94.94 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 94.85 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 94.49 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 94.46 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 94.26 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 94.25 | |
| KOG0385|consensus | 971 | 94.11 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 94.07 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 94.06 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 94.02 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 93.99 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.77 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 93.76 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 93.6 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 93.42 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 93.32 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.03 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 93.01 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 92.95 | |
| KOG1123|consensus | 776 | 92.88 | ||
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.85 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 92.8 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.74 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 92.62 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 92.41 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 92.41 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 92.37 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 92.26 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 92.23 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 92.21 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 92.19 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 92.19 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 92.09 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.92 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.81 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 91.66 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 91.58 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 91.33 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 91.16 | |
| KOG4150|consensus | 1034 | 91.05 | ||
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 91.0 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 90.99 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 90.95 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 90.93 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 90.85 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 90.83 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 90.7 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 90.63 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 90.58 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 90.36 | |
| KOG0389|consensus | 941 | 90.36 | ||
| KOG0384|consensus | 1373 | 89.98 | ||
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 89.95 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 89.9 | |
| KOG0920|consensus | 924 | 89.7 | ||
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 89.65 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 89.08 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 89.03 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 89.02 | |
| PRK13764 | 602 | ATPase; Provisional | 88.86 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 88.73 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 88.68 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 88.53 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 88.42 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 88.38 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 88.23 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 88.09 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 88.04 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 87.94 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 87.93 | |
| KOG0391|consensus | 1958 | 87.78 | ||
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 87.59 | |
| PRK12377 | 248 | putative replication protein; Provisional | 87.53 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 87.51 | |
| KOG0387|consensus | 923 | 87.48 | ||
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 87.34 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 87.32 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 87.17 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 87.12 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 87.1 | |
| KOG4439|consensus | 901 | 87.05 | ||
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 86.97 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 86.74 | |
| KOG0060|consensus | 659 | 86.41 | ||
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 86.12 | |
| PRK13876 | 663 | conjugal transfer coupling protein TraG; Provision | 85.84 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 85.84 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 85.83 | |
| PRK08181 | 269 | transposase; Validated | 85.64 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 85.55 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 85.51 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 85.34 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 85.28 | |
| PRK06526 | 254 | transposase; Provisional | 85.24 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 85.1 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 85.07 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 84.75 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 84.74 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 84.56 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 84.42 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 84.3 | |
| KOG0742|consensus | 630 | 84.28 | ||
| KOG1805|consensus | 1100 | 84.24 | ||
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 84.23 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 84.05 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 83.98 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 83.86 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 83.85 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 83.81 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 83.39 | |
| KOG0953|consensus | 700 | 83.1 | ||
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 83.01 | |
| KOG1132|consensus | 945 | 82.9 | ||
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 82.84 | |
| KOG1533|consensus | 290 | 82.66 | ||
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 82.64 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 82.44 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 82.12 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 81.82 | |
| TIGR03754 | 643 | conj_TOL_TraD conjugative coupling factor TraD, TO | 81.67 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 81.66 | |
| TIGR02759 | 566 | TraD_Ftype type IV conjugative transfer system cou | 81.59 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 81.4 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 81.07 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 81.04 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 80.89 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 80.78 | |
| PF05729 | 166 | NACHT: NACHT domain | 80.55 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 80.53 | |
| KOG1002|consensus | 791 | 80.45 | ||
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 80.29 | |
| PRK13700 | 732 | conjugal transfer protein TraD; Provisional | 80.24 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 80.23 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 80.22 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 80.13 |
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=320.67 Aligned_cols=219 Identities=23% Similarity=0.361 Sum_probs=201.9
Q ss_pred cccCCcCCCCCCcccccCCCC---CCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCC
Q psy10677 79 VSFSLPFRDDKTSVVTVPSYP---DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTT 155 (317)
Q Consensus 79 rg~~~~lr~~~~d~~~v~nf~---~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~ 155 (317)
|-+| +++..++....+++|. .++..+++.+++.++-.++...++.+.|...|+|+++|+++++++.|..++++..|
T Consensus 165 r~id-pl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey 243 (731)
T KOG0339|consen 165 RQID-PLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEY 243 (731)
T ss_pred ccCC-CCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhc
Confidence 4454 4555666666666665 56667799999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHH
Q psy10677 156 NNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTREL 235 (317)
Q Consensus 156 ~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreL 235 (317)
+.| ||||.+++|..+ +|+||+ .+|.||||||.||+.|++.|++.++.+..+++|.+||+||||||
T Consensus 244 ~kp---------tpiq~qalptal--sgrdvi----gIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrel 308 (731)
T KOG0339|consen 244 EKP---------TPIQCQALPTAL--SGRDVI----GIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTREL 308 (731)
T ss_pred ccC---------Cccccccccccc--ccccch----heeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHH
Confidence 999 999999999999 999999 99999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCC
Q psy10677 236 AQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGL 307 (317)
Q Consensus 236 a~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf 307 (317)
|.||+.++++|++.+|++++++|||.+..+|.+.++. |||||||||+++++.+ .+.|+++||||+|+| |||
T Consensus 309 a~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfd-mGf 387 (731)
T KOG0339|consen 309 ASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD-MGF 387 (731)
T ss_pred HHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhc-ccc
Confidence 9999999999999999999999999999999999987 8999999999999987 455788999999999 999
Q ss_pred cHHHHhh
Q psy10677 308 TEETCVN 314 (317)
Q Consensus 308 ~~~~~~~ 314 (317)
+++.+-+
T Consensus 388 e~qVrSI 394 (731)
T KOG0339|consen 388 EPQVRSI 394 (731)
T ss_pred HHHHHHH
Confidence 9998754
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=329.51 Aligned_cols=195 Identities=32% Similarity=0.542 Sum_probs=175.2
Q ss_pred cCCCCHHHHHHHHHHCCceeecCC-CCCCcccccCCCCChhhhc-----------------------------ccCcCCC
Q psy10677 106 LQGKTKEEIDSFRKEHNITLIGQN-IPKPVKTLDETNIPSYILG-----------------------------PMKPKTT 155 (317)
Q Consensus 106 i~~~~~~~i~~~~~~~~i~~~g~~-~~~~~~~f~~~~l~~~l~~-----------------------------~l~~~g~ 155 (317)
.......+.+.+++.+.+++.|.+ +|.|..+|++.+++..... +|+..||
T Consensus 32 ~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ls~~~~~~lk~~g~ 111 (519)
T KOG0331|consen 32 VKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEELMKALKEQGF 111 (519)
T ss_pred cccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcccccHHHHHHHHhcCC
Confidence 556667788889999999998876 8988888776655555444 4558999
Q ss_pred CCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc-CCCCCCCCCceEEEEcCcHH
Q psy10677 156 NNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK-MPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 156 ~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~-~~~~~~~~~~~alil~Ptre 234 (317)
+.| ||||+++||.++ +|+|++ ++|.|||||||||+||++.|+.. +....++.+|++|||+||||
T Consensus 112 ~~P---------tpIQaq~wp~~l--~GrD~v----~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 112 EKP---------TPIQAQGWPIAL--SGRDLV----GIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred CCC---------chhhhcccceec--cCCceE----EEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 999 999999999999 999999 99999999999999999999998 66777788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCC-----CCCCCCchhHHHhhhcC
Q psy10677 235 LAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQND-----AHSPCLSVWRRLQDILG 306 (317)
Q Consensus 235 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~~~g 306 (317)
||.||++++.++++..+++++|+|||.++..|...+++ |+|||||||.|+++.+. +.+++|||||+||| ||
T Consensus 177 LA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMld-mG 255 (519)
T KOG0331|consen 177 LAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLD-MG 255 (519)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhc-cc
Confidence 99999999999999999999999999999999999998 89999999999999984 55788999999999 99
Q ss_pred CcHHHHhhcc
Q psy10677 307 LTEETCVNVK 316 (317)
Q Consensus 307 f~~~~~~~~~ 316 (317)
|+++.+.++.
T Consensus 256 Fe~qI~~Il~ 265 (519)
T KOG0331|consen 256 FEPQIRKILS 265 (519)
T ss_pred cHHHHHHHHH
Confidence 9999988763
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=302.75 Aligned_cols=222 Identities=23% Similarity=0.366 Sum_probs=194.8
Q ss_pred cCcccceec--ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhh
Q psy10677 69 LGTAGFLLS--AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYI 146 (317)
Q Consensus 69 ~g~~~iLva--arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l 146 (317)
.|+.-.-|+ |+|+-. +......|..| .++..+++++-+..|+..+|.+.|..+|.|+.+|.++++|..+
T Consensus 111 ~~k~LmsV~ElakGi~Y-------~ePi~T~WkPP--~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~ 181 (610)
T KOG0341|consen 111 DGKALMSVAELAKGITY-------EEPIKTAWKPP--RHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPL 181 (610)
T ss_pred cCccceeHHHHhCCCcc-------cCcchhccCCc--HHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHH
Confidence 343333344 888764 44444445554 3688999999999999999999999999999999999999999
Q ss_pred hcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC---CCCCCCC
Q psy10677 147 LGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP---KLEEGDG 223 (317)
Q Consensus 147 ~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~---~~~~~~~ 223 (317)
++.|++.|+.+| ||||-+.+|.++ +|+|++ ++|-||||||+.|.||++...+.+. +..++.|
T Consensus 182 L~~lk~KGI~~P---------TpIQvQGlPvvL--sGRDmI----GIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 182 LRGLKKKGIVHP---------TPIQVQGLPVVL--SGRDMI----GIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred HHHHHhcCCCCC---------CceeecCcceEe--ecCcee----eEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 999999999999 999999999999 999999 9999999999999999999887654 4456789
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcCC------CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCCC----
Q psy10677 224 PIALVLAPTRELAQQIQAVISIFSRTM------RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQNDA---- 290 (317)
Q Consensus 224 ~~alil~PtreLa~Qi~~~~~~l~~~~------~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~~---- 290 (317)
|.+||+||+||||.|+++.+..+...+ .+++.++.||.+..+|...+++ |+|+|||||.|+|..+.+
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~ 326 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDA 326 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHH
Confidence 999999999999999999999887644 5999999999999999999988 799999999999999854
Q ss_pred -CCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 291 -HSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 291 -~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++++|||||||+| |||++|.+..+
T Consensus 327 CRyL~lDEADRmiD-mGFEddir~iF 351 (610)
T KOG0341|consen 327 CRYLTLDEADRMID-MGFEDDIRTIF 351 (610)
T ss_pred HHHhhhhhHHHHhh-ccchhhHHHHH
Confidence 4789999999999 99999988754
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=318.82 Aligned_cols=216 Identities=32% Similarity=0.497 Sum_probs=190.5
Q ss_pred cCCCCCCcccccCCCC---CCCccccCCCCHHHHHHHHHHCCcee-ecCCCCCCcccccCCCCChhhhcccCcCCCCCCC
Q psy10677 84 PFRDDKTSVVTVPSYP---DPSVNHLQGKTKEEIDSFRKEHNITL-IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159 (317)
Q Consensus 84 ~lr~~~~d~~~v~nf~---~p~~~~i~~~~~~~i~~~~~~~~i~~-~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~ 159 (317)
.+..++|+...+++|. ......+..+++++++.++..+++.+ .|.++|.|+.+|++++|++.++++|++.||..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p- 153 (545)
T PTZ00110 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP- 153 (545)
T ss_pred ccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC-
Confidence 3456667666665554 12233478899999999999999987 799999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 160 ~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
||||.++||.++ +|+|++ ++||||||||+||++|++.++..++......+|++|||+||||||.|+
T Consensus 154 --------t~iQ~~aip~~l--~G~dvI----~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi 219 (545)
T PTZ00110 154 --------TPIQVQGWPIAL--SGRDMI----GIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQI 219 (545)
T ss_pred --------CHHHHHHHHHHh--cCCCEE----EEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHH
Confidence 999999999999 999999 999999999999999999999876554456789999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+++++++....++++++++||.+...+...+.. |+|+|||+|.+++..+ .+.++++||||+|++ +||.++.
T Consensus 220 ~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld-~gf~~~i 298 (545)
T PTZ00110 220 REQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLD-MGFEPQI 298 (545)
T ss_pred HHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhh-cchHHHH
Confidence 999999999999999999999998888777655 8999999999999875 567899999999999 9998877
Q ss_pred Hhhc
Q psy10677 312 CVNV 315 (317)
Q Consensus 312 ~~~~ 315 (317)
+..+
T Consensus 299 ~~il 302 (545)
T PTZ00110 299 RKIV 302 (545)
T ss_pred HHHH
Confidence 6543
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=325.99 Aligned_cols=200 Identities=29% Similarity=0.435 Sum_probs=187.6
Q ss_pred CCCccccCCCCHHHHHHHHHHCC-ceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccc
Q psy10677 100 DPSVNHLQGKTKEEIDSFRKEHN-ITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIP 178 (317)
Q Consensus 100 ~p~~~~i~~~~~~~i~~~~~~~~-i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~ 178 (317)
+++..++..++.++++.|+.... +.+.|..+|+|+++|.+.|+...++..++++||.+| ||||.+|||.|
T Consensus 329 y~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~---------~~IQ~qAiP~I 399 (997)
T KOG0334|consen 329 YIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKP---------TPIQAQAIPAI 399 (997)
T ss_pred cccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCC---------cchhhhhcchh
Confidence 44556688899999999999986 999999999999999999999999999999999999 99999999999
Q ss_pred ccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 179 LNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 179 l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
+ +|+||| ++|.||||||++|+||++.|++.+++.+.+.||.|||++||||||.||++.+++|++.++++++|+|
T Consensus 400 m--sGrdvI----gvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vy 473 (997)
T KOG0334|consen 400 M--SGRDVI----GVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVY 473 (997)
T ss_pred c--cCcceE----EeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEec
Confidence 9 999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHccC---cEEECcHHHHHHHhcC--------CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 259 GGTSKMYQVILLRI---LTSATNTSLGIYLQQN--------DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 259 gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--------~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
||....+|+..+++ |+||||||++|++-.+ .+.++++||||+|+| +||+|+....+
T Consensus 474 gg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfd-mgfePq~~~Ii 540 (997)
T KOG0334|consen 474 GGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFD-MGFEPQITRIL 540 (997)
T ss_pred CCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhhe-eccCcccchHH
Confidence 99999999999988 8999999999998775 333888999999998 99999876544
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=290.95 Aligned_cols=164 Identities=28% Similarity=0.300 Sum_probs=152.7
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
....+|.+|++.+++++++++.||..| |+||+++||.++ .|+||+ +.|+||||||.||+||++++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~P---------T~IQ~~aiP~~L--~g~dvI----glAeTGSGKT~afaLPIl~~ 122 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKP---------TKIQSEAIPVAL--GGRDVI----GLAETGSGKTGAFALPILQR 122 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCC---------chhhhhhcchhh--CCCcEE----EEeccCCCchhhhHHHHHHH
Confidence 456899999999999999999999999 999999999999 999999 99999999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc-
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ- 287 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~- 287 (317)
|...++ .|+||||+||||||.||.+++++++..+|++++++.||.+...|...+.+ |+|||||||++++.+
T Consensus 123 LL~~p~-----~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T 197 (476)
T KOG0330|consen 123 LLQEPK-----LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT 197 (476)
T ss_pred HHcCCC-----CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc
Confidence 998653 49999999999999999999999999999999999999999999988877 999999999999994
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
+ .++++++||||+++| +.|.++.-..++
T Consensus 198 kgf~le~lk~LVlDEADrlLd-~dF~~~ld~ILk 230 (476)
T KOG0330|consen 198 KGFSLEQLKFLVLDEADRLLD-MDFEEELDYILK 230 (476)
T ss_pred cCccHHHhHHHhhchHHhhhh-hhhHHHHHHHHH
Confidence 2 677899999999999 999988765543
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=298.21 Aligned_cols=194 Identities=28% Similarity=0.406 Sum_probs=180.3
Q ss_pred cCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcC
Q psy10677 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKK 185 (317)
Q Consensus 106 i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~d 185 (317)
+.+|++.+|+-|+...++.+.|..+|+|+.+|++.+||.++++.+++.||..| ||||.+|||..+ +.+|
T Consensus 216 l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~ep---------tpIqR~aipl~l--Q~rD 284 (673)
T KOG0333|consen 216 LAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEP---------TPIQRQAIPLGL--QNRD 284 (673)
T ss_pred HHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCC---------chHHHhhccchh--ccCC
Confidence 56788999999999999999999999999999999999999999999999999 999999999999 9999
Q ss_pred cccccceeccCCChhHHHHHHHHHHHHHcCCCCCC----CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 186 FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE----GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~----~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
+| +.|+||||||+||++|++..|.+.++..+ ..||+|+||+||||||+||+++..+|++.++++++.++||.
T Consensus 285 ~i----gvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~ 360 (673)
T KOG0333|consen 285 PI----GVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGL 360 (673)
T ss_pred ee----eEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEeccc
Confidence 99 99999999999999999999998885543 45899999999999999999999999999999999999999
Q ss_pred CHHHHHHHccC---cEEECcHHHHHHHhc-----CCCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 262 SKMYQVILLRI---LTSATNTSLGIYLQQ-----NDAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 262 ~~~~~~~~~~~---ilv~TP~~l~~~l~~-----~~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+.++|...++. |+|||||||++-|.+ +...++++||||+|+| |||+|+.-..+
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD-mgfE~dv~~iL 421 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID-MGFEPDVQKIL 421 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc-ccccHHHHHHH
Confidence 99999766666 899999999987766 5778899999999999 99999876543
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=302.51 Aligned_cols=203 Identities=16% Similarity=0.285 Sum_probs=179.3
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcc
Q psy10677 97 SYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWT 176 (317)
Q Consensus 97 nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip 176 (317)
+|+.........+++++++.+++.+++.+.|.++|.|+.+|++++|++.++++|++.||..| ||+|.+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p---------tpiQ~~aip 153 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP---------TPIQMQAIP 153 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC---------CHHHHHHHH
Confidence 34444444345688999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCC--CCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEE
Q psy10677 177 IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPK--LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH 254 (317)
Q Consensus 177 ~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~--~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~ 254 (317)
.++ +|+|++ ++||||||||+||++|++.++..... .....+|++|||+||||||.|+++.++.+.+..++++
T Consensus 154 ~il--~g~dvi----v~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~ 227 (518)
T PLN00206 154 AAL--SGRSLL----VSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKT 227 (518)
T ss_pred HHh--cCCCEE----EEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceE
Confidence 999 999999 99999999999999999999875421 1223689999999999999999999999999999999
Q ss_pred EEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 255 ACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 255 ~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++++||.+...+...+.. |+|||||+|.+++..+ .+.++++||||+|++ .||.++..+.+
T Consensus 228 ~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~-~gf~~~i~~i~ 295 (518)
T PLN00206 228 ALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLE-RGFRDQVMQIF 295 (518)
T ss_pred EEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhh-cchHHHHHHHH
Confidence 999999999888877755 8999999999999875 456789999999999 99988766543
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=284.22 Aligned_cols=204 Identities=30% Similarity=0.447 Sum_probs=179.7
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHHC-Ccee----ec--CCCCCCcccccC-CCCChhhhcccCcCCCCCCCcCCCCCCC
Q psy10677 96 PSYPDPSVNHLQGKTKEEIDSFRKEH-NITL----IG--QNIPKPVKTLDE-TNIPSYILGPMKPKTTNNENNHNKNKKC 167 (317)
Q Consensus 96 ~nf~~p~~~~i~~~~~~~i~~~~~~~-~i~~----~g--~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~~~~~~~ 167 (317)
.||+..+ .+.+.+++++++++++++ +|++ .| ..+|+|.-+|++ +.--+++++.+++.||.+|
T Consensus 174 knfYke~-~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKP--------- 243 (629)
T KOG0336|consen 174 KNFYKES-NETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKP--------- 243 (629)
T ss_pred hhhhhcC-chhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCC---------
Confidence 3444444 458999999999999997 4555 23 358999999988 4678999999999999999
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL-EEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~-~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
||||++|||.+| +|.|++ +.|.||+|||+||++|-+.|+..++.. ....+|.+|+++||||||.|+.-+++++
T Consensus 244 tPIqSQaWPI~L--QG~Dli----GVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 244 TPIQSQAWPILL--QGIDLI----GVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred Ccchhcccceee--cCcceE----EEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 999999999999 999999 999999999999999999999888743 3456899999999999999999999998
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhccC
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNVKD 317 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~~~ 317 (317)
... +++.+|+|||.+..+|.+.+++ |+|+|||||.++...+ .+.+++|||||+||| |||+++.+..+.|
T Consensus 318 syn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLD-MgFEpqIrkilld 394 (629)
T KOG0336|consen 318 SYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD-MGFEPQIRKILLD 394 (629)
T ss_pred hhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhc-ccccHHHHHHhhh
Confidence 775 8999999999999999999988 7999999999998776 455789999999999 9999999887654
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=286.17 Aligned_cols=172 Identities=23% Similarity=0.326 Sum_probs=154.6
Q ss_pred CCCCCcccccCCCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 129 NIPKPVKTLDETNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 129 ~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
+.|-.-..|..+||++.+...|.. +++..| |.+|+++||.++ +|+|++ +.|+||||||+||++|
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~p---------TsVQkq~IP~lL--~grD~l----V~aQTGSGKTLAYllP 194 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAP---------TSVQKQAIPVLL--EGRDAL----VRAQTGSGKTLAYLLP 194 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCcc---------chHhhcchhhhh--cCcceE----EEcCCCCcccHHHHHH
Confidence 333444679999999999999986 599999 999999999999 999999 9999999999999999
Q ss_pred HHHHHHcCC-CCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHH
Q psy10677 208 ALYHILKMP-KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 208 ~l~~l~~~~-~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
++++|..+. +..+..||+||||+||||||.|+|+.+.++.+.+ .|-.+.+.||..+..+...+++ |+|||||||.
T Consensus 195 iVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLv 274 (708)
T KOG0348|consen 195 IVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLV 274 (708)
T ss_pred HHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHH
Confidence 999998765 4567789999999999999999999999999865 5777888999999888888887 7999999999
Q ss_pred HHHhcC------CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 283 IYLQQN------DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 283 ~~l~~~------~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
|+|++. .++++++||||+++| +||+++..+.++
T Consensus 275 DHLknT~~i~~s~LRwlVlDEaDrlle-LGfekdit~Il~ 313 (708)
T KOG0348|consen 275 DHLKNTKSIKFSRLRWLVLDEADRLLE-LGFEKDITQILK 313 (708)
T ss_pred HHHhccchheeeeeeEEEecchhHHHh-ccchhhHHHHHH
Confidence 999873 688999999999999 999999988764
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=296.20 Aligned_cols=163 Identities=24% Similarity=0.315 Sum_probs=148.1
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|.+.||..| ||||.++||.++ .|+|++ ++|+||||||+||++|+|+++..
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~p---------t~IQ~~~IP~~l--~g~Dvi----~~A~TGsGKT~Af~lP~l~~l~~ 93 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEP---------TPIQLAAIPLIL--AGRDVL----GQAQTGTGKTAAFLLPLLQKILK 93 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHHhc
Confidence 689999999999999999999999 999999999999 999999 99999999999999999999875
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
.. ....+.|||++||||||.||++++..++++. ++++++++||.+...|...++. |||||||||+|+++++
T Consensus 94 ~~---~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l 170 (513)
T COG0513 94 SV---ERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKL 170 (513)
T ss_pred cc---ccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCc
Confidence 31 1112229999999999999999999999998 8999999999999999988876 8999999999999998
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
.+.++++||||+|+| |||.++....++
T Consensus 171 ~l~~v~~lVlDEADrmLd-~Gf~~~i~~I~~ 200 (513)
T COG0513 171 DLSGVETLVLDEADRMLD-MGFIDDIEKILK 200 (513)
T ss_pred chhhcCEEEeccHhhhhc-CCCHHHHHHHHH
Confidence 455788999999999 999999877653
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=282.36 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=152.9
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
..+|.+|+|+..|++++..+||..| ||||.++||..+ -|+|++ +||-||||||.||+||+|++|.
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~P---------TpIQ~a~IPval--lgkDIc----a~A~TGsGKTAAF~lPiLERLl 244 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKP---------TPIQVATIPVAL--LGKDIC----ACAATGSGKTAAFALPILERLL 244 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCC---------CchhhhcccHHh--hcchhh----heecccCCchhhhHHHHHHHHh
Confidence 3589999999999999999999999 999999999999 999999 9999999999999999999998
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 214 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 214 ~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
-.++. ...-++||||||||||.|++++.++++.+.+|.+++++||.+...|...++. |+|+|||||+|||.+.
T Consensus 245 YrPk~--~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 245 YRPKK--VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cCccc--CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 76542 4567999999999999999999999999999999999999999999998877 9999999999999985
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++..++||||||||+ -||.++..+.+
T Consensus 323 f~ldsiEVLvlDEADRMLe-egFademnEii 352 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLE-EGFADEMNEII 352 (691)
T ss_pred ccccceeEEEechHHHHHH-HHHHHHHHHHH
Confidence 566789999999999 99999887765
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=281.65 Aligned_cols=190 Identities=23% Similarity=0.294 Sum_probs=171.3
Q ss_pred HHHHHHHHHHCCce--eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 111 KEEIDSFRKEHNIT--LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 111 ~~~i~~~~~~~~i~--~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
.+....|.+.+.+- +.|.++|.++.+|++..+.+.+..+++..||..| ||+|+.+||.+. .|+|++
T Consensus 48 ~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~p---------tpvQk~sip~i~--~Grdl~- 115 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKP---------TPVQKYSIPIIS--GGRDLM- 115 (482)
T ss_pred cchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCC---------Ccceeeccceee--cCCceE-
Confidence 45556666666654 4899999999999999999999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCC-----CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLE-----EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~-----~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 263 (317)
+||+||||||.||++|++.++.+..... ....|++|||+||||||.|++++++++....+++++.+|||.+.
T Consensus 116 ---acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~ 192 (482)
T KOG0335|consen 116 ---ACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL 192 (482)
T ss_pred ---EEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch
Confidence 9999999999999999999998875321 12369999999999999999999999999999999999999999
Q ss_pred HHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 264 MYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 264 ~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+...+.+ |+|||||||.++++.+ .+.+++|||||+|+|.|||.|+.+..+
T Consensus 193 ~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv 252 (482)
T KOG0335|consen 193 GAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIV 252 (482)
T ss_pred hhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHh
Confidence 988888877 8999999999999998 455789999999999999999998765
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=280.32 Aligned_cols=180 Identities=19% Similarity=0.312 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHCC-ceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 110 TKEEIDSFRKEHN-ITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 110 ~~~~i~~~~~~~~-i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
.+++++++..... +. ...+..|.+++|+...+++|++.+|..| |.||+++||..| .|+||+
T Consensus 49 Eee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~---------teiQ~~~Ip~aL--~G~Dvl- 110 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKM---------TEIQRDTIPMAL--QGHDVL- 110 (758)
T ss_pred hHHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccH---------HHHHHhhcchhc--cCcccc-
Confidence 4566666654432 22 2356789999999999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI 268 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~ 268 (317)
+.|.|||||||||++|+|++|.+. ++....|..|||++||||||.|+++++.+.+++.++.+.++.||.+......
T Consensus 111 ---GAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~e 186 (758)
T KOG0343|consen 111 ---GAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELE 186 (758)
T ss_pred ---cccccCCCceeeehHHHHHHHHHc-CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHH
Confidence 999999999999999999999875 5677889999999999999999999999999999999999999999998888
Q ss_pred HccC--cEEECcHHHHHHHhcC------CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 269 LLRI--LTSATNTSLGIYLQQN------DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 269 ~~~~--ilv~TP~~l~~~l~~~------~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+.. |+|||||||+.+|.++ .+.+++|||||||+| |||....-
T Consensus 187 Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD-MGFk~tL~ 237 (758)
T KOG0343|consen 187 RISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD-MGFKKTLN 237 (758)
T ss_pred hhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH-HhHHHHHH
Confidence 8877 8999999999999985 788999999999999 99976543
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=272.81 Aligned_cols=165 Identities=21% Similarity=0.262 Sum_probs=147.1
Q ss_pred ccccCCC--CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 135 KTLDETN--IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 135 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+|++++ |++++++++.+.||... ||+|..+||.++ .++||+ +.|+||||||+||++|+++.+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~m---------TpVQa~tIPlll--~~KDVv----veavTGSGKTlAFllP~le~i 68 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKM---------TPVQAATIPLLL--KNKDVV----VEAVTGSGKTLAFLLPMLEII 68 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCccc---------CHHHHhhhHHHh--cCCceE----EEcCCCCCchhhHHHHHHHHH
Confidence 4688776 55999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC-CCcEEEEEECCCCHHHHHHHccC----cEEECcHHHHHHHhc
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHACLYGGTSKMYQVILLRI----LTSATNTSLGIYLQQ 287 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~gg~~~~~~~~~~~~----ilv~TP~~l~~~l~~ 287 (317)
.+...........|||++||||||.||.+++..|..+ .++.+.+++||.+..+....++. |+|||||||.+++++
T Consensus 69 ~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~ 148 (567)
T KOG0345|consen 69 YRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQR 148 (567)
T ss_pred HhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhc
Confidence 6654322223578999999999999999999999988 58999999999999998887766 899999999999998
Q ss_pred C-------CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 288 N-------DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 288 ~-------~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
. .+.+++|||||+++| |||..+..+.+
T Consensus 149 ~~~~l~~rsLe~LVLDEADrLld-mgFe~~~n~IL 182 (567)
T KOG0345|consen 149 EAEKLSFRSLEILVLDEADRLLD-MGFEASVNTIL 182 (567)
T ss_pred hhhhccccccceEEecchHhHhc-ccHHHHHHHHH
Confidence 3 677899999999999 99998887654
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=271.54 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=153.6
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+...|++..|++..+++++++||+.. |++|..++|+++ .|+|++ +.|.||||||+||+||+++.+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~M---------T~VQ~~ti~pll--~gkDvl----~~AKTGtGKTlAFLiPaie~l 144 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETM---------TPVQQKTIPPLL--EGKDVL----AAAKTGTGKTLAFLLPAIELL 144 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccch---------hHHHHhhcCccC--CCccce----eeeccCCCceeeehhHHHHHH
Confidence 45678999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
.+.+...+ ++..+||+|||||||.|++.+++++.++. ++.+..+.||++.......+.+ |+|+|||||+|++++.
T Consensus 145 ~k~~~~~r-~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 145 RKLKFKPR-NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred HhcccCCC-CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC
Confidence 98765444 78899999999999999999999999988 9999999999998877777766 8999999999999984
Q ss_pred ------CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 289 ------DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 289 ------~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
.++.+++||||+++| +||.++..+.++
T Consensus 224 ~~f~~r~~k~lvlDEADrlLd-~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 224 SGFLFRNLKCLVLDEADRLLD-IGFEEDVEQIIK 256 (543)
T ss_pred CcchhhccceeEeecchhhhh-cccHHHHHHHHH
Confidence 456789999999999 999999988764
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=255.03 Aligned_cols=159 Identities=22% Similarity=0.252 Sum_probs=149.5
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
....|++|||++++.+.|+.+|+..| ||||..|||.|+ .|+|++ ++|.||||||+||.+|+++++
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~p---------TpiQ~~cIpkIL--eGrdci----g~AkTGsGKT~AFaLPil~rL 69 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKP---------TPIQQACIPKIL--EGRDCI----GCAKTGSGKTAAFALPILNRL 69 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCC---------CchHhhhhHHHh--cccccc----cccccCCCcchhhhHHHHHhh
Confidence 45789999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~- 288 (317)
.+++ .|..|+|++||||||.|+.+++..+++.+++++++++||++.-.|...+.. ++|+||||+.+++..+
T Consensus 70 sedP-----~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 70 SEDP-----YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred ccCC-----CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 9874 589999999999999999999999999999999999999999988888876 9999999999999886
Q ss_pred --------CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 289 --------DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 289 --------~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+.+.++||||+|++ -.|.++..
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~-~~f~d~L~ 175 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLA-GCFPDILE 175 (442)
T ss_pred ccchhhhhceeeEEecchhhhhc-cchhhHHh
Confidence 678999999999999 88877643
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=259.47 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=148.5
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.|++++.+.||..| |.||..|||.++ .|+|++ +.|.||||||+||++|+++.|..
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekp---------TlIQs~aIplaL--EgKDvv----arArTGSGKT~AYliPllqkll~ 83 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKP---------TLIQSSAIPLAL--EGKDVV----ARARTGSGKTAAYLIPLLQKLLA 83 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCc---------chhhhcccchhh--cCccee----eeeccCCCchHHHHHHHHHHHHH
Confidence 699999999999999999999999 999999999999 999999 99999999999999999999988
Q ss_pred CCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC--CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 215 MPKL-EEGDGPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 215 ~~~~-~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
.+.. ....+|.|+||+||||||+|+|+++.++.... .++++-+..+++.......+.. |+|+||++++.++..+
T Consensus 84 ~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~ 163 (569)
T KOG0346|consen 84 EKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG 163 (569)
T ss_pred hhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc
Confidence 7654 45668999999999999999999999998876 4788888877777766666655 9999999999999887
Q ss_pred ------CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 ------DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ------~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.++++||||-|+. +|++++.+..
T Consensus 164 ~~~~~~~l~~LVvDEADLlls-fGYeedlk~l 194 (569)
T KOG0346|consen 164 VLEYLDSLSFLVVDEADLLLS-FGYEEDLKKL 194 (569)
T ss_pred cchhhhheeeEEechhhhhhh-cccHHHHHHH
Confidence 477899999999999 9999998754
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=265.66 Aligned_cols=167 Identities=23% Similarity=0.278 Sum_probs=148.7
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
-+.-|.+++||.+++++|.++||..| |+||+.++|.+. .| .|++ +.|.|||||||||-+||+++
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~P---------t~IQsl~lp~ai--~gk~DIl----GaAeTGSGKTLAFGIPiv~~ 243 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRP---------TEIQSLVLPAAI--RGKVDIL----GAAETGSGKTLAFGIPIVER 243 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCC---------ccchhhcccHhh--ccchhcc----cccccCCCceeeecchhhhh
Confidence 45789999999999999999999999 999999999999 99 8999 99999999999999999997
Q ss_pred HHcCCCCC------CCCC--ceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHH
Q psy10677 212 ILKMPKLE------EGDG--PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 212 l~~~~~~~------~~~~--~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~ 280 (317)
+......+ ...+ |.+||++||||||.||.+.+.+++...++++..++||.....|...++. |+|+||||
T Consensus 244 l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGR 323 (731)
T KOG0347|consen 244 LLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGR 323 (731)
T ss_pred hhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchH
Confidence 76543211 1223 4599999999999999999999999999999999999999999888876 99999999
Q ss_pred HHHHHhcC--------CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 281 LGIYLQQN--------DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 281 l~~~l~~~--------~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
||++++++ +++.++|||||||++ -|.+++..+.+
T Consensus 324 lweli~e~n~~l~~~k~vkcLVlDEaDRmve-kghF~Els~lL 365 (731)
T KOG0347|consen 324 LWELIEEDNTHLGNFKKVKCLVLDEADRMVE-KGHFEELSKLL 365 (731)
T ss_pred HHHHHHhhhhhhhhhhhceEEEEccHHHHhh-hccHHHHHHHH
Confidence 99999985 577899999999999 88777776654
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=266.16 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=148.9
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+-.+|++++|++.++++|.+.||..| ||+|.+|||.++ +|+|++ ++||||||||+||++|+++++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~p---------t~iQ~~aip~il--~g~dvi----~~ApTGsGKTla~llp~l~~l 70 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNC---------TPIQALALPLTL--AGRDVA----GQAQTGTGKTMAFLTATFHYL 70 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCcEE----EECCCCchHHHHHHHHHHHHH
Confidence 34689999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCC--CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc
Q psy10677 213 LKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ 287 (317)
Q Consensus 213 ~~~~~~--~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~ 287 (317)
...+.. ....++++|||+||||||.|+++++..+.+..++++..++||.+...+...+.. |+|||||+|.+++..
T Consensus 71 ~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~ 150 (423)
T PRK04837 71 LSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ 150 (423)
T ss_pred HhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 865432 123479999999999999999999999999999999999999998888777764 899999999999987
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+ .+.+.++||||+|++ .||..+....
T Consensus 151 ~~~~l~~v~~lViDEad~l~~-~~f~~~i~~i 181 (423)
T PRK04837 151 NHINLGAIQVVVLDEADRMFD-LGFIKDIRWL 181 (423)
T ss_pred CCcccccccEEEEecHHHHhh-cccHHHHHHH
Confidence 5 567888999999999 9998876543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=265.48 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=147.2
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+..+|++++|++.++++|.+.||..| ||||.++||.++ +|+|++ ++||||||||+||++|+++++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~p---------tpiQ~~~ip~~l--~G~Dvi----~~ApTGSGKTlafllpil~~l 71 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRC---------TPIQALTLPVAL--PGGDVA----GQAQTGTGKTLAFLVAVMNRL 71 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EEcCCCCcHHHHHHHHHHHHH
Confidence 33479999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCC--CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc
Q psy10677 213 LKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ 287 (317)
Q Consensus 213 ~~~~~~--~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~ 287 (317)
...+.. ....++++|||+||||||.|+++.+.++....++++..++||.+...+...+.. |||+||++|++++..
T Consensus 72 ~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~ 151 (572)
T PRK04537 72 LSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQ 151 (572)
T ss_pred HhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHh
Confidence 764321 122368999999999999999999999999999999999999999888777754 999999999999876
Q ss_pred C------CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 288 N------DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 288 ~------~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+ .+.++++||||.|++ +||.++.+..
T Consensus 152 ~~~~~l~~v~~lViDEAh~lld-~gf~~~i~~i 183 (572)
T PRK04537 152 HKVVSLHACEICVLDEADRMFD-LGFIKDIRFL 183 (572)
T ss_pred ccccchhheeeeEecCHHHHhh-cchHHHHHHH
Confidence 4 345789999999999 9998876544
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=256.43 Aligned_cols=163 Identities=23% Similarity=0.290 Sum_probs=145.4
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+|++++|++.++++|.+.||..| |++|.++||.++ +|+|++ ++||||||||+||++|+++.+...
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p---------t~iQ~~ai~~il--~g~dvl----v~apTGsGKTla~~lpil~~l~~~ 66 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREP---------TPIQQQAIPAVL--EGRDLM----ASAQTGTGKTAGFTLPLLQHLITR 66 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCcHHHHHHHHHHHHhhhc
Confidence 79999999999999999999999 999999999999 999999 999999999999999999999765
Q ss_pred CCCC-CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC---
Q psy10677 216 PKLE-EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 216 ~~~~-~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--- 288 (317)
.... ....+++|||+||||||.|+++.++.+.+..++++..++||.+...+...+.. |+||||++|++++..+
T Consensus 67 ~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~ 146 (456)
T PRK10590 67 QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVK 146 (456)
T ss_pred ccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcc
Confidence 3221 12346899999999999999999999999999999999999999888776654 9999999999988765
Q ss_pred --CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.++++++||||+|++ .||..+.+..
T Consensus 147 l~~v~~lViDEah~ll~-~~~~~~i~~i 173 (456)
T PRK10590 147 LDQVEILVLDEADRMLD-MGFIHDIRRV 173 (456)
T ss_pred cccceEEEeecHHHHhc-cccHHHHHHH
Confidence 567889999999999 9997766543
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=256.41 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=144.9
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|.++||..| ||+|.+|||.++ +|+|++ ++||||||||+||++|+++++..
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~---------t~iQ~~ai~~~l--~g~dvi----~~a~TGsGKT~a~~lpil~~l~~ 68 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEM---------TPIQAQSLPAIL--AGKDVI----AQAKTGSGKTAAFGLGLLQKLDV 68 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--cCCCEE----EECCCCCcHHHHHHHHHHHHhhh
Confidence 589999999999999999999999 999999999999 999999 99999999999999999999864
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
. ..++++|||+||||||.|+.+.++.+.+.. ++++..++||.+...+...+.. |+|||||+|.+++.++
T Consensus 69 ~-----~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~ 143 (460)
T PRK11776 69 K-----RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTL 143 (460)
T ss_pred c-----cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCc
Confidence 3 246799999999999999999999998765 7999999999999888877765 8999999999999876
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
.++++++||||+|++ +||.++....+
T Consensus 144 ~l~~l~~lViDEad~~l~-~g~~~~l~~i~ 172 (460)
T PRK11776 144 DLDALNTLVLDEADRMLD-MGFQDAIDAII 172 (460)
T ss_pred cHHHCCEEEEECHHHHhC-cCcHHHHHHHH
Confidence 466789999999999 99987765443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=251.64 Aligned_cols=162 Identities=22% Similarity=0.363 Sum_probs=146.0
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++|++++|++.++++|++.||..| |++|.++||.++ .|+|++ ++||||||||+||++|+++++..
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p---------~~iQ~~ai~~~~--~g~d~l----~~apTGsGKT~~~~lp~l~~l~~ 65 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRP---------TAIQAEAIPPAL--DGRDVL----GSAPTGTGKTAAFLLPALQHLLD 65 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHHhh
Confidence 379999999999999999999999 999999999999 999999 99999999999999999999976
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC---
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--- 288 (317)
.+. .....+++||++||+|||.|+++.+..+.+..++++..++||.+...+...+.. |+|||||+|++++..+
T Consensus 66 ~~~-~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 66 FPR-RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred ccc-cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcC
Confidence 432 223468999999999999999999999999999999999999999888877654 9999999999998876
Q ss_pred --CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+.++++||||+|++ +||.++...
T Consensus 145 ~~~v~~lViDEah~~l~-~~~~~~~~~ 170 (434)
T PRK11192 145 CRAVETLILDEADRMLD-MGFAQDIET 170 (434)
T ss_pred cccCCEEEEECHHHHhC-CCcHHHHHH
Confidence 456788999999999 999877654
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=235.59 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=150.7
Q ss_pred CCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHH
Q psy10677 129 NIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPA 208 (317)
Q Consensus 129 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~ 208 (317)
.-..++.+|++++|.+++++++...||++| +.||+.|+|.++ +|+||+ ++|.+|+|||.+|-+.+
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekP---------S~IQqrAi~~Il--kGrdVi----aQaqSGTGKTa~~si~v 85 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKP---------SAIQQRAIPQIL--KGRDVI----AQAQSGTGKTATFSISV 85 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCc---------hHHHhhhhhhhh--cccceE----EEecCCCCceEEEEeee
Confidence 345678899999999999999999999999 999999999999 999999 99999999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 209 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 209 l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
++.+.-. ....+||||+||||||.|+.+++..++.++++.+..+.||.+..+..+.+.. ++.|||||+++++
T Consensus 86 lq~~d~~-----~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmi 160 (400)
T KOG0328|consen 86 LQSLDIS-----VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMI 160 (400)
T ss_pred eeecccc-----cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHH
Confidence 9887654 2458999999999999999999999999999999999999999888887766 6999999999999
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+++ .+.+++|||||.||+ -||.++..-.
T Consensus 161 kr~~L~tr~vkmlVLDEaDemL~-kgfk~Qiydi 193 (400)
T KOG0328|consen 161 KRRSLRTRAVKMLVLDEADEMLN-KGFKEQIYDI 193 (400)
T ss_pred HhccccccceeEEEeccHHHHHH-hhHHHHHHHH
Confidence 987 456889999999999 6999887644
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-32 Score=238.54 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=144.8
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..|+++.|..+|+..+.+.||++| +|||.++||.++ +|+|++ +.|.+|+|||.||++|+|+++..
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekP---------SPiQeesIPiaL--tGrdiL----aRaKNGTGKT~a~~IP~Lekid~ 149 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKP---------SPIQEESIPIAL--TGRDIL----ARAKNGTGKTAAYCIPVLEKIDP 149 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCC---------CCccccccceee--cchhhh----hhccCCCCCccceechhhhhcCc
Confidence 469999999999999999999999 999999999999 999999 99999999999999999999976
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC---
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--- 288 (317)
. ....+++|++||||||.|+.+.|+.+++++++++...+||++..+.+..+.. ++||||||++|+++++
T Consensus 150 ~-----~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ 224 (459)
T KOG0326|consen 150 K-----KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVAD 224 (459)
T ss_pred c-----ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccccc
Confidence 4 4579999999999999999999999999999999999999999998888877 7999999999999997
Q ss_pred --CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+..++++||||+|++ ..|.+-.
T Consensus 225 ls~c~~lV~DEADKlLs-~~F~~~~ 248 (459)
T KOG0326|consen 225 LSDCVILVMDEADKLLS-VDFQPIV 248 (459)
T ss_pred chhceEEEechhhhhhc-hhhhhHH
Confidence 556789999999999 7776543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=259.06 Aligned_cols=161 Identities=23% Similarity=0.259 Sum_probs=145.3
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+|++++|++.++++|.++||..| ||+|.++||.++ .|+|++ ++||||||||+||++|+++.+
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~p---------tpiQ~~ai~~ll--~g~dvl----~~ApTGsGKT~af~lpll~~l 68 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKP---------SPIQAECIPHLL--NGRDVL----GMAQTGSGKTAAFSLPLLHNL 68 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCCcHHHHHHHHHHHHh
Confidence 34579999999999999999999999 999999999999 999999 999999999999999999998
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
... ..+|++|||+||||||.|+++.+..+.+.+ +++++.++||.+...+...++. |||||||+|.+++.++
T Consensus 69 ~~~-----~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~ 143 (629)
T PRK11634 69 DPE-----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143 (629)
T ss_pred hhc-----cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 653 346899999999999999999999998875 7999999999999988887765 8999999999999876
Q ss_pred C-----CCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 D-----AHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ~-----~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
. +.+++|||||.|++ +||.++....
T Consensus 144 ~l~l~~l~~lVlDEAd~ml~-~gf~~di~~I 173 (629)
T PRK11634 144 TLDLSKLSGLVLDEADEMLR-MGFIEDVETI 173 (629)
T ss_pred CcchhhceEEEeccHHHHhh-cccHHHHHHH
Confidence 4 45689999999999 9998876543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=247.01 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=146.3
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
..+|.+++|++.++++|.+.||..| |++|.++||.++ +|+|++ ++||||||||+||++|+++++.
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~---------~~iQ~~ai~~~~--~G~dvi----~~apTGSGKTlay~lpil~~l~ 150 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYC---------TPIQAQVLGYTL--AGHDAI----GRAQTGTGKTAAFLISIINQLL 150 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHHH
Confidence 4579999999999999999999999 999999999999 999999 9999999999999999999998
Q ss_pred cCCCCC--CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhc
Q psy10677 214 KMPKLE--EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQ 287 (317)
Q Consensus 214 ~~~~~~--~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~ 287 (317)
..+... ...++++|||+||+|||.|+++.++.+.+.+++++..++||.+...+...+. +|+|+||++|++++..
T Consensus 151 ~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~ 230 (475)
T PRK01297 151 QTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR 230 (475)
T ss_pred hcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 754211 1236899999999999999999999999999999999999999887776664 3999999999998886
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+ .+++.++||+|.+++ .||.+..+..
T Consensus 231 ~~~~l~~l~~lViDEah~l~~-~~~~~~l~~i 261 (475)
T PRK01297 231 GEVHLDMVEVMVLDEADRMLD-MGFIPQVRQI 261 (475)
T ss_pred CCcccccCceEEechHHHHHh-cccHHHHHHH
Confidence 4 577899999999999 8998766544
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-29 Score=228.18 Aligned_cols=161 Identities=23% Similarity=0.279 Sum_probs=148.7
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
-+|..+||+..+.+++.+.||..| ||||.+.+|.+| +|+|++ ..|.||||||.||++|+++++..
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~p---------tpiqRKTipliL--e~~dvv----~martgsgktaaf~ipm~e~Lk~ 85 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTP---------TPIQRKTIPLIL--EGRDVV----GMARTGSGKTAAFLIPMIEKLKS 85 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCC---------Cchhccccccee--eccccc----eeeecCCcchhhHHHHHHHHHhh
Confidence 379999999999999999999999 999999999999 999999 99999999999999999999976
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc----
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ---- 287 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~---- 287 (317)
.. ..|.+|+|++||||||.|..++++.+++++++++++++||.+..+|...+.. ||++||||+..+.-+
T Consensus 86 ~s----~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~ 161 (529)
T KOG0337|consen 86 HS----QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLT 161 (529)
T ss_pred cc----ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheecc
Confidence 52 5689999999999999999999999999999999999999999999999953 899999999865433
Q ss_pred -CCCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 288 -NDAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 288 -~~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+.+++.||||++++ |||.|+..+.+
T Consensus 162 l~sveyVVfdEadrlfe-mgfqeql~e~l 189 (529)
T KOG0337|consen 162 LSSVEYVVFDEADRLFE-MGFQEQLHEIL 189 (529)
T ss_pred ccceeeeeehhhhHHHh-hhhHHHHHHHH
Confidence 5677888899999999 99999988765
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-29 Score=224.26 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=147.4
Q ss_pred CCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHH
Q psy10677 130 IPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPAL 209 (317)
Q Consensus 130 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l 209 (317)
+-.-+.+|+|++|+++|++.+...||++| |.||+.||+++. .|.|+. ++|++|+|||.||.++++
T Consensus 21 ~~evvdsfddm~L~e~LLrgiy~yGFekP---------SaIQqraI~p~i--~G~dv~----~qaqsgTgKt~af~i~iL 85 (397)
T KOG0327|consen 21 WNEVVDSFDDMNLKESLLRGIYAYGFEKP---------SAIQQRAILPCI--KGHDVI----AQAQSGTGKTAAFLISIL 85 (397)
T ss_pred HHHHhhhhhhcCCCHHHHhHHHhhccCCc---------hHHHhccccccc--cCCcee----EeeeccccchhhhHHHHH
Confidence 33345699999999999999999999999 999999999999 999999 999999999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC----cEEECcHHHHHHH
Q psy10677 210 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI----LTSATNTSLGIYL 285 (317)
Q Consensus 210 ~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~----ilv~TP~~l~~~l 285 (317)
+++.-. ....+|++++||||||.|+.++.+.+...++.++..+.||.....+..+++. |+||||||+.+++
T Consensus 86 q~iD~~-----~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml 160 (397)
T KOG0327|consen 86 QQIDMS-----VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDML 160 (397)
T ss_pred hhcCcc-----hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhh
Confidence 998543 3578999999999999999999999999999999999999998755544433 8999999999999
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+.+ .+.+.++||||.|++ .||.++.+..+
T Consensus 161 ~~~~l~~~~iKmfvlDEaDEmLs-~gfkdqI~~if 194 (397)
T KOG0327|consen 161 NRGSLSTDGIKMFVLDEADEMLS-RGFKDQIYDIF 194 (397)
T ss_pred ccccccccceeEEeecchHhhhc-cchHHHHHHHH
Confidence 665 567889999999999 99999887654
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=225.97 Aligned_cols=152 Identities=18% Similarity=0.120 Sum_probs=130.2
Q ss_pred ccccCCCCChh----------hhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-------ccCcCcccccceeccCC
Q psy10677 135 KTLDETNIPSY----------ILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN-------FQAKKFISVLQKKAEVQ 197 (317)
Q Consensus 135 ~~f~~~~l~~~----------l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~-------~~g~dvi~~~~~~a~tG 197 (317)
.-|+.++++.. +.+++.++++... .|+|.+++|.++. ..++|+. +.||||
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~---------FPVQ~aVlp~ll~~~~~p~~~r~rDIc----V~ApTG 193 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRL---------FPVQYAVLPSLLEEIRSPPPSRPRDIC----VNAPTG 193 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccc---------cchHHHHHHHHHHhhcCCCCCCCCceE----EecCCC
Confidence 45666665544 4445888999999 9999999988853 2478999 999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-----
Q psy10677 198 SRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI----- 272 (317)
Q Consensus 198 sGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~----- 272 (317)
||||+||.|||++.+...+ .+..+|||++|||+|+.|+++++.+++.+.|+.++.+.|-.+.......+..
T Consensus 194 SGKTLaY~iPIVQ~L~~R~----v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~ 269 (620)
T KOG0350|consen 194 SGKTLAYVIPIVQLLSSRP----VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPEC 269 (620)
T ss_pred CCceeeehhHHHHHHccCC----ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCcc
Confidence 9999999999999887643 3568999999999999999999999999999999999998888777766644
Q ss_pred ---cEEECcHHHHHHHhc------CCCCCCCCchhHHHhh
Q psy10677 273 ---LTSATNTSLGIYLQQ------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 273 ---ilv~TP~~l~~~l~~------~~~~~~~lde~d~l~~ 303 (317)
|+|+|||||.|||.. +.++|+++||||||++
T Consensus 270 ~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 270 RIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred ccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH
Confidence 899999999999995 4788999999999999
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-27 Score=222.99 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=141.5
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+|+++++++.+.++|.+.||..| ||+|.+|||.++ +|+|++ ++||||||||++|++|+++.+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~---------~~~Q~~ai~~i~--~~~d~i----i~apTGsGKT~~~~l~~l~~~ 90 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKP---------SAIQQRGIKPIL--DGYDTI----GQAQSGTGKTATFVIAALQLI 90 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHh
Confidence 35789999999999999999999999 999999999999 999999 999999999999999999988
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~- 288 (317)
... ..++++|||+||+|||.|+++.+..+....++++..++||.....+...+.. |+|+||++|.+++..+
T Consensus 91 ~~~-----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~ 165 (401)
T PTZ00424 91 DYD-----LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH 165 (401)
T ss_pred cCC-----CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC
Confidence 642 2467999999999999999999999998888999999999988777666654 8999999999988764
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+++.++||+|.+++ .||.....
T Consensus 166 ~~l~~i~lvViDEah~~~~-~~~~~~~~ 192 (401)
T PTZ00424 166 LRVDDLKLFILDEADEMLS-RGFKGQIY 192 (401)
T ss_pred cccccccEEEEecHHHHHh-cchHHHHH
Confidence 567889999999998 78765443
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-27 Score=223.52 Aligned_cols=183 Identities=18% Similarity=0.198 Sum_probs=152.8
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccC----CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDE----TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~----~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
.....|+.+.+.+.|.++|.|+.+|++ ...++.+++.+.+.||..| ||+|++|+|.++ .++|++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~P---------t~iq~~aipvfl--~~r~~l- 177 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEP---------TPIQKQAIPVFL--EKRDVL- 177 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCC---------Ccccchhhhhhh--cccceE-
Confidence 344677888999999999999999998 4689999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh--cCCCcEEEEEECCCCHHHH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS--RTMRIRHACLYGGTSKMYQ 266 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~--~~~~~~~~~~~gg~~~~~~ 266 (317)
.|||||||||+||++|++++|..........|.+++|+.||||||.|+++++.++. .+++++++......-..+.
T Consensus 178 ---AcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk 254 (593)
T KOG0344|consen 178 ---ACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQK 254 (593)
T ss_pred ---EeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhc
Confidence 99999999999999999999987654334568999999999999999999999999 7777777666544322221
Q ss_pred HH----HccCcEEECcHHHHHHHhcCC-------CCCCCCchhHHHhhhc-CCcHHH
Q psy10677 267 VI----LLRILTSATNTSLGIYLQQND-------AHSPCLSVWRRLQDIL-GLTEET 311 (317)
Q Consensus 267 ~~----~~~~ilv~TP~~l~~~l~~~~-------~~~~~lde~d~l~~~~-gf~~~~ 311 (317)
.. ....++|+||.|+..++..+. +..+++||||++++ - +|.++.
T Consensus 255 ~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe-~~~f~~Ql 310 (593)
T KOG0344|consen 255 PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFE-PEFFVEQL 310 (593)
T ss_pred cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhC-hhhHHHHH
Confidence 11 122289999999999999873 55778899999999 5 665543
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=221.66 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=147.6
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
++--|.-..+|+++-|...++..|+..+|..| |+||..|||.++ .+.|+| ++|..|+|||+.|.+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~p---------tkiQaaAIP~~~--~kmDli----VQaKSGTGKTlVfsv 81 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALP---------TKIQAAAIPAIF--SKMDLI----VQAKSGTGKTLVFSV 81 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCC---------Cchhhhhhhhhh--cccceE----EEecCCCCceEEEEe
Confidence 33344555799999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC--cEEECcHHHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI--LTSATNTSLGI 283 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~ 283 (317)
.+++.+... ...++++|++||||+|.||.+.+.+++..+ |+++.+.+||++.......++. |+|||||||..
T Consensus 82 ~av~sl~~~-----~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 82 LAVESLDSR-----SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQ 156 (980)
T ss_pred eeehhcCcc-----cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHH
Confidence 999888753 568999999999999999999999999854 8999999999999988888877 99999999999
Q ss_pred HHhcC-----CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 284 YLQQN-----DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 284 ~l~~~-----~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+++.+ .++|.+|||||+|++.-.|.++.
T Consensus 157 L~el~~~n~s~vrlfVLDEADkL~~t~sfq~~I 189 (980)
T KOG4284|consen 157 LVELGAMNMSHVRLFVLDEADKLMDTESFQDDI 189 (980)
T ss_pred HHHhcCCCccceeEEEeccHHhhhchhhHHHHH
Confidence 88875 67788999999999966666554
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-26 Score=203.80 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=142.5
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
..+++|++|+|.|+++++|..++|.+| +.||..|+|.++....+++| ++|.+|+|||.||.|.+|.+
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kP---------skIQe~aLPlll~~Pp~nlI----aQsqsGtGKTaaFvL~MLsr 153 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKP---------SKIQETALPLLLAEPPQNLI----AQSQSGTGKTAAFVLTMLSR 153 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCc---------chHHHhhcchhhcCCchhhh----hhhcCCCchhHHHHHHHHHh
Confidence 446899999999999999999999999 99999999999977788999 99999999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ---- 287 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~---- 287 (317)
+... ...|+++.|+||||||.|+.+++.+.++..++++....-|.....-......|+|||||.+.|++..
T Consensus 154 vd~~-----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 154 VDPD-----VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred cCcc-----ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhh
Confidence 8764 3579999999999999999999999999999999888777643333333344999999999999887
Q ss_pred --CCCCCCCCchhHHHhhhcCCcHHH
Q psy10677 288 --NDAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 288 --~~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
..++..++||||.|++..||.++-
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S 254 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQS 254 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccc
Confidence 467788999999999999997653
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-25 Score=189.62 Aligned_cols=157 Identities=25% Similarity=0.357 Sum_probs=140.5
Q ss_pred ccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC
Q psy10677 137 LDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP 216 (317)
Q Consensus 137 f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~ 216 (317)
|+++++++.+.+.|.+.|++.| +++|.++|+.++ +|+|++ ++||||+|||++|++|+++++....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~---------~~~Q~~~~~~~~--~~~~~l----i~~~TG~GKT~~~~~~~l~~~~~~~ 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKP---------TPIQARAIPPLL--SGRDVI----GQAQTGSGKTAAFLIPILEKLDPSP 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCcEE----EECCCCCcHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999 999999999999 999999 9999999999999999999988752
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----
Q psy10677 217 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN----- 288 (317)
Q Consensus 217 ~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~----- 288 (317)
...+++++|++||++|+.|+.+.++.+....++++..++|+.+..+....+.. ++|+||+++.+++..+
T Consensus 66 ---~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~ 142 (203)
T cd00268 66 ---KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLS 142 (203)
T ss_pred ---ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChh
Confidence 13579999999999999999999999998889999999999998777766652 8999999999998876
Q ss_pred CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 289 DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 289 ~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+++.++||+|.+.+ .+|.....
T Consensus 143 ~l~~lIvDE~h~~~~-~~~~~~~~ 165 (203)
T cd00268 143 KVKYLVLDEADRMLD-MGFEDQIR 165 (203)
T ss_pred hCCEEEEeChHHhhc-cChHHHHH
Confidence 466788999999997 77765544
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-26 Score=195.19 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=148.3
Q ss_pred eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 125 LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..|+.+.-.-+-|.|+-|.|++++++-..||++| +.+|.++||... -|.||+ ++|.+|.|||..|
T Consensus 32 ~kgsyv~ihssgfrdfllkpellraivdcgfehp---------sevqhecipqai--lgmdvl----cqaksgmgktavf 96 (387)
T KOG0329|consen 32 KKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVF 96 (387)
T ss_pred ccCcEEEEeccchhhhhcCHHHHHHHHhccCCCc---------hHhhhhhhhHHh--hcchhh----eecccCCCceeee
Confidence 3455544344568999999999999999999999 999999999999 999999 9999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHH
Q psy10677 205 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 205 ~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~ 280 (317)
++..|+.+... .....+|++|.|||||-||.++...|++++ ++++++.+||.+.....+.+++ |+||||||
T Consensus 97 vl~tlqqiepv-----~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGr 171 (387)
T KOG0329|consen 97 VLATLQQIEPV-----DGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGR 171 (387)
T ss_pred ehhhhhhcCCC-----CCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHH
Confidence 99999988653 246789999999999999999999999988 7999999999999888887777 99999999
Q ss_pred HHHHHhcCCCCCC-----CCchhHHHhhhcCCcHHHHhhc
Q psy10677 281 LGIYLQQNDAHSP-----CLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 281 l~~~l~~~~~~~~-----~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++.+..++.+++. +|||+|+|++.+.+.-|..+.+
T Consensus 172 ilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEif 211 (387)
T KOG0329|consen 172 ILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIF 211 (387)
T ss_pred HHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHh
Confidence 9999999876654 6789999998766655554443
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-25 Score=224.72 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=122.2
Q ss_pred CCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC
Q psy10677 141 NIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220 (317)
Q Consensus 141 ~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~ 220 (317)
.|++.+.++|++.||..| |++|.+|||.++ +|+|++ ++||||||||+||++|+++.+...
T Consensus 20 ~l~~~l~~~L~~~g~~~p---------~~~Q~~ai~~il--~G~nvv----v~apTGSGKTla~~LPiL~~l~~~----- 79 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRP---------WQHQARAAELAH--AGRHVV----VATGTASGKSLAYQLPVLSALADD----- 79 (742)
T ss_pred cCCHHHHHHHHHcCCCcC---------CHHHHHHHHHHH--CCCCEE----EECCCCCcHHHHHHHHHHHHHhhC-----
Confidence 389999999999999999 999999999999 999999 999999999999999999999753
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc--cCcEEECcHHHHHHHh---------cCC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL--RILTSATNTSLGIYLQ---------QND 289 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~--~~ilv~TP~~l~~~l~---------~~~ 289 (317)
.++++|||+||||||.|+.+.++++. ..++++..+.|+++..++.... .+|+|+||++|...+. -+.
T Consensus 80 -~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~ 157 (742)
T TIGR03817 80 -PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRR 157 (742)
T ss_pred -CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhc
Confidence 36899999999999999999999997 4578998888888865543222 2399999999874322 247
Q ss_pred CCCCCCchhHHHhh
Q psy10677 290 AHSPCLSVWRRLQD 303 (317)
Q Consensus 290 ~~~~~lde~d~l~~ 303 (317)
+++.++||||+|.+
T Consensus 158 l~~vViDEah~~~g 171 (742)
T TIGR03817 158 LRYVVIDECHSYRG 171 (742)
T ss_pred CCEEEEeChhhccC
Confidence 89999999999977
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-23 Score=207.21 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=127.8
Q ss_pred cCCCCChhhhcccC-----cCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 138 DETNIPSYILGPMK-----PKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 138 ~~~~l~~~l~~~l~-----~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+.+.+++.+.+. ..||..| -.++|+|.+++|.++ .++|++ +.|+||||||+||++|++..+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p------~~~tp~qvQ~I~~i~--l~~gvI----AeaqTGeGKTLAf~LP~l~~a 132 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQ------WDMVPYDVQILGAIA--MHKGFI----TEMQTGEGKTLTAVMPLYLNA 132 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCC------CCCChHHHHHhhhhh--cCCCeE----EEeCCCCChHHHHHHHHHHHH
Confidence 55678888887776 5788777 345999999999999 999999 999999999999999999988
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcCC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQND- 289 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~~- 289 (317)
... ..++||+||+|||.|+.+++..+.+++|+++.+++||.+..++...+.. |+||||||| .|+++.+.
T Consensus 133 L~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~ 204 (970)
T PRK12899 133 LTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSI 204 (970)
T ss_pred hhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCC
Confidence 642 1389999999999999999999999999999999999999988876644 999999999 99999873
Q ss_pred -----------CCCCCCchhHHHhh
Q psy10677 290 -----------AHSPCLSVWRRLQD 303 (317)
Q Consensus 290 -----------~~~~~lde~d~l~~ 303 (317)
+++.+|||||+||-
T Consensus 205 ~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 205 ATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred CcCHHHhhcccccEEEEechhhhhh
Confidence 34778999999985
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=212.28 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=130.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|++++||+.+++++++.||..| +|+|.+|++. ++ +|+|++ ++||||||||++|.+|++.++..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l---------~p~Q~~ai~~~~~--~g~nvl----v~APTGSGKTlia~lail~~l~~ 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEEL---------YPPQAEAVEAGLL--DGKNLL----AAIPTASGKTLIAELAMLKAIAR 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcC---------CHHHHHHHHHHHh--CCCcEE----EECCCcchHHHHHHHHHHHHHhc
Confidence 68999999999999999999999 9999999998 67 999999 99999999999999999999852
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-----CC
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-----ND 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-----~~ 289 (317)
+.++||++|||+||.|+++.++.+.. .++++..++|+.+.......-.+|+||||+++..++.. +.
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~ 137 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDD 137 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhh
Confidence 56899999999999999999998765 48999999999876554333345999999999988875 36
Q ss_pred CCCCCCchhHHHhhhcCCcH
Q psy10677 290 AHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~ 309 (317)
+.+.++||+|.+.+ .++.+
T Consensus 138 v~lvViDE~H~l~d-~~rg~ 156 (737)
T PRK02362 138 ITCVVVDEVHLIDS-ANRGP 156 (737)
T ss_pred cCEEEEECccccCC-CcchH
Confidence 78999999999987 55543
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=206.10 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=130.4
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|+++++++.+.+.|++.||..| +|+|.+|++. ++ +|+|++ ++||||||||++|.+|++.++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l---------~~~Q~~ai~~~~~--~g~nvl----v~apTGsGKT~~~~l~il~~l~~ 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEEL---------YPPQAEALKSGVL--EGKNLV----LAIPTASGKTLVAEIVMVNKLLR 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCC---------CHHHHHHHHHHHh--CCCcEE----EECCCCcHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999 9999999996 77 999999 99999999999999999999874
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-----CC
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-----ND 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-----~~ 289 (317)
. +.++|||+||++||.|+++.++.+.+ .++++..++|+.+...+...-.+|+|+||+++..++.. +.
T Consensus 67 ~-------~~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~ 138 (720)
T PRK00254 67 E-------GGKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKD 138 (720)
T ss_pred c-------CCeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhc
Confidence 2 56999999999999999999998754 68999999999886544333345999999999888775 36
Q ss_pred CCCCCCchhHHHhhhcCCcH
Q psy10677 290 AHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~ 309 (317)
+.+.++||+|.+.+ .++..
T Consensus 139 l~lvViDE~H~l~~-~~rg~ 157 (720)
T PRK00254 139 VKLVVADEIHLIGS-YDRGA 157 (720)
T ss_pred CCEEEEcCcCccCC-ccchH
Confidence 88999999999887 55543
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-22 Score=208.51 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=121.3
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC-C
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE-E 220 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~-~ 220 (317)
|++.+.+.+++ +|..| ||+|.+|||.++ +|+|++ ++||||||||+||++|+++++....... .
T Consensus 18 l~~~v~~~~~~-~~~~~---------tpiQ~~Ai~~il--~g~nvl----i~APTGSGKTlaa~Lpil~~l~~~~~~~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTF---------TPPQRYAIPLIH--EGKNVL----ISSPTGSGKTLAAFLAIIDELFRLGREGEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCC---------CHHHHHHHHHHH--cCCCEE----EECCCCCcHHHHHHHHHHHHHHhhccccCC
Confidence 67777777665 79999 999999999999 999999 9999999999999999999997643211 1
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHH-------Hh----cCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISI-------FS----RTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~-------l~----~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
..++++||++|||+||.|+++.+.. +. ... ++++.+.+|+++..++...+++ |+||||++|..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 3578999999999999999986653 22 233 7899999999998887766653 9999999998877
Q ss_pred hc-------CCCCCCCCchhHHHhh
Q psy10677 286 QQ-------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 286 ~~-------~~~~~~~lde~d~l~~ 303 (317)
.. +.++++++||+|.+++
T Consensus 162 ~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 162 NSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred cChhHHHHHhcCCEEEEechhhhcc
Confidence 54 3678999999999987
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=204.04 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=107.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
|++|..++|.++ .|+|++ ++||||||||+ |.+|++..+.. .++++|||+||||||.|+++.++.++
T Consensus 82 t~iQ~~~i~~il--~g~dv~----i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 82 WSLQRTWAKRLL--LGESFA----IIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cHHHHHHHHHHH--CCCcEE----EEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 999999999999 999999 99999999995 66777766643 37899999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-----HHHHHHHcc----CcEEECcHHHHHHHhc---CCCCCCCCchhHHHhh----------hc
Q psy10677 248 RTMRIRHACLYGGTS-----KMYQVILLR----ILTSATNTSLGIYLQQ---NDAHSPCLSVWRRLQD----------IL 305 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~-----~~~~~~~~~----~ilv~TP~~l~~~l~~---~~~~~~~lde~d~l~~----------~~ 305 (317)
...++++..++||.+ ..++...+. +|+|||||+|.++++. ..+++.++||||+|++ .+
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 988999888887764 223333332 4999999999988653 4588999999999985 48
Q ss_pred CCcHH
Q psy10677 306 GLTEE 310 (317)
Q Consensus 306 gf~~~ 310 (317)
||.++
T Consensus 228 GF~~~ 232 (1176)
T PRK09401 228 GFSEE 232 (1176)
T ss_pred CCCHH
Confidence 99754
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=204.06 Aligned_cols=144 Identities=14% Similarity=0.056 Sum_probs=117.9
Q ss_pred hhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCc
Q psy10677 145 YILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGP 224 (317)
Q Consensus 145 ~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~ 224 (317)
++.+.+.+.....| +++|..++|.++ .|+|++ ++||||||||+ |.+|++..+.. .++
T Consensus 66 ~f~~~f~~~~g~~p---------~~iQ~~~i~~il--~G~d~v----i~ApTGsGKT~-f~l~~~~~l~~-------~g~ 122 (1171)
T TIGR01054 66 EFEEFFKKAVGSEP---------WSIQKMWAKRVL--RGDSFA----IIAPTGVGKTT-FGLAMSLFLAK-------KGK 122 (1171)
T ss_pred HHHHHHHHhcCCCC---------cHHHHHHHHHHh--CCCeEE----EECCCCCCHHH-HHHHHHHHHHh-------cCC
Confidence 34445555434469 999999999999 999999 99999999996 77888877653 268
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcCCCcEEE---EEECCCCHHHHHHH---c----cCcEEECcHHHHHHHhc-C-CCCC
Q psy10677 225 IALVLAPTRELAQQIQAVISIFSRTMRIRHA---CLYGGTSKMYQVIL---L----RILTSATNTSLGIYLQQ-N-DAHS 292 (317)
Q Consensus 225 ~alil~PtreLa~Qi~~~~~~l~~~~~~~~~---~~~gg~~~~~~~~~---~----~~ilv~TP~~l~~~l~~-~-~~~~ 292 (317)
++|||+||||||.|+++.++++...+++++. +++||.+..++... + .+|+|||||+|.+++.. . .+++
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~ 202 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDF 202 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999999988776654 46799988765432 2 23899999999988776 2 6889
Q ss_pred CCCchhHHHhhh----------cCCcHHH
Q psy10677 293 PCLSVWRRLQDI----------LGLTEET 311 (317)
Q Consensus 293 ~~lde~d~l~~~----------~gf~~~~ 311 (317)
.++||||+|++. +||.++.
T Consensus 203 iVvDEaD~~L~~~k~vd~il~llGF~~e~ 231 (1171)
T TIGR01054 203 IFVDDVDALLKASKNVDKLLKLLGFSEEL 231 (1171)
T ss_pred EEEeChHhhhhccccHHHHHHHcCCCHHH
Confidence 999999999983 8999864
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=192.94 Aligned_cols=146 Identities=19% Similarity=0.173 Sum_probs=134.1
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|++.+.+++++. |+.| ||.|.+|||.+. +|+|++ ++||||||||+|.+||++..|.+.......
T Consensus 8 l~~~v~~~~~~~-~~~~---------t~~Q~~a~~~i~--~G~nvL----iiAPTGsGKTeAAfLpil~~l~~~~~~~~~ 71 (814)
T COG1201 8 LDPRVREWFKRK-FTSL---------TPPQRYAIPEIH--SGENVL----IIAPTGSGKTEAAFLPVINELLSLGKGKLE 71 (814)
T ss_pred cCHHHHHHHHHh-cCCC---------CHHHHHHHHHHh--CCCceE----EEcCCCCChHHHHHHHHHHHHHhccCCCCC
Confidence 889999999998 9999 999999999999 999999 999999999999999999999987433345
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc-------CCCC
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ-------NDAH 291 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~-------~~~~ 291 (317)
.+..+|+++|.|+|...+.+.++.+++.+|+.+..-+|+++..+.....++ |+|+||+.|.-++.. +++.
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr 151 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR 151 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc
Confidence 689999999999999999999999999999999999999999888888777 999999999988877 4888
Q ss_pred CCCCchhHHHhh
Q psy10677 292 SPCLSVWRRLQD 303 (317)
Q Consensus 292 ~~~lde~d~l~~ 303 (317)
+.++||.+.+.+
T Consensus 152 ~VIVDEiHel~~ 163 (814)
T COG1201 152 YVIVDEIHALAE 163 (814)
T ss_pred EEEeehhhhhhc
Confidence 999999988765
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=158.74 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=111.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
||+|.++|+.+. +|+|++ +.||||||||++|++|++..+.+. ...+++|++|+++|+.|+++.+.++.
T Consensus 1 t~~Q~~~~~~i~--~~~~~l----i~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~ 68 (169)
T PF00270_consen 1 TPLQQEAIEAII--SGKNVL----ISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFF 68 (169)
T ss_dssp -HHHHHHHHHHH--TTSEEE----EECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH--cCCCEE----EECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccc
Confidence 789999999999 999999 999999999999999999998864 23599999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHH-HHHHHc---cCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcH
Q psy10677 248 RTMRIRHACLYGGTSKM-YQVILL---RILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~-~~~~~~---~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~ 309 (317)
...++++..++||.+.. .....+ ..|+|+||.++.+++..+ .+++.++||+|.+.+ .++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~-~~~~~ 138 (169)
T PF00270_consen 69 SNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD-ETFRA 138 (169)
T ss_dssp TTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH-TTHHH
T ss_pred cccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc-ccHHH
Confidence 98889999999999865 444444 339999999999999873 477889999999999 45544
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-21 Score=193.36 Aligned_cols=147 Identities=11% Similarity=0.052 Sum_probs=127.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.|++++|++.+++.+.+.+|. + +++|.++++.+. +|+|++ ++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l---------~~~Q~~ai~~l~--~~~nvl----v~apTGSGKTl~a~lail~~l~~- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-L---------YDHQRMAIEQLR--KGENVI----VSVPTAAGKTLIAYSAIYETFLA- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-C---------CHHHHHHHHHHh--cCCcEE----EECCCCchHHHHHHHHHHHHHHh-
Confidence 688999999999999999987 8 999999999999 999999 99999999999999999998763
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DA 290 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~ 290 (317)
+.++|+++||++||.|+++.++++. ..|+++...+|+.+.......-.+|+|+||+++..++.+. .+
T Consensus 65 -------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v 136 (674)
T PRK01172 65 -------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDV 136 (674)
T ss_pred -------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhc
Confidence 4689999999999999999999875 3689999999988765443333459999999998887653 67
Q ss_pred CCCCCchhHHHhhhcCCc
Q psy10677 291 HSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 291 ~~~~lde~d~l~~~~gf~ 308 (317)
++.++||+|.+.| .++.
T Consensus 137 ~lvViDEaH~l~d-~~rg 153 (674)
T PRK01172 137 GLIVADEIHIIGD-EDRG 153 (674)
T ss_pred CEEEEecchhccC-CCcc
Confidence 8999999999877 5544
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-21 Score=205.25 Aligned_cols=146 Identities=15% Similarity=0.050 Sum_probs=120.4
Q ss_pred hhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCC
Q psy10677 144 SYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGD 222 (317)
Q Consensus 144 ~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~ 222 (317)
.++.+.+++ .|| .| |++|.++||.++ +|+|++ ++||||||||++++++.+.... .
T Consensus 66 ~~~~~~f~~~~G~-~p---------t~iQ~~~i~~il--~G~d~l----i~APTGsGKTl~~~~~al~~~~--------~ 121 (1638)
T PRK14701 66 EEFEEFFEKITGF-EF---------WSIQKTWAKRIL--RGKSFS----IVAPTGMGKSTFGAFIALFLAL--------K 121 (1638)
T ss_pred HHHHHHHHHhhCC-CC---------CHHHHHHHHHHH--cCCCEE----EEEcCCCCHHHHHHHHHHHHHh--------c
Confidence 344555665 699 59 999999999999 999999 9999999999977766654422 3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCC--CcEEEEEECCCCHHHHHHH---cc----CcEEECcHHHHHHHhc---CCC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQVIL---LR----ILTSATNTSLGIYLQQ---NDA 290 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~gg~~~~~~~~~---~~----~ilv~TP~~l~~~l~~---~~~ 290 (317)
++++|||+||+|||.|+++.++.++..+ ++++..++||.+..++... +. +|+|+|||+|.+++.. ..+
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i 201 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKF 201 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCC
Confidence 6799999999999999999999998865 5788889999998876533 22 3899999999987654 578
Q ss_pred CCCCCchhHHHhh----------hcCCcHHHHh
Q psy10677 291 HSPCLSVWRRLQD----------ILGLTEETCV 313 (317)
Q Consensus 291 ~~~~lde~d~l~~----------~~gf~~~~~~ 313 (317)
++.++||||+|++ .+||.++..+
T Consensus 202 ~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 202 DFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred CEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 9999999998875 4799999875
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-20 Score=185.55 Aligned_cols=135 Identities=8% Similarity=-0.118 Sum_probs=110.5
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEE-Ec
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV-LA 230 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~ali-l~ 230 (317)
.||+ | ||+|.+++|.++ .|+ +++ ++||||||||.+|.++++.. .. ....|++|| ++
T Consensus 12 ~G~~-P---------tpiQ~~~i~~il--~G~~~v~----~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~v 69 (844)
T TIGR02621 12 HGYS-P---------FPWQLSLAERFV--AGQPPES----CSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVV 69 (844)
T ss_pred hCCC-C---------CHHHHHHHHHHH--cCCCcce----EecCCCCcccHHHHHhhccc-cc-----cccccceEEEeC
Confidence 3788 9 999999999999 998 577 78999999999776555522 11 134688888 55
Q ss_pred CcHHHHHHHHHHHHHHhcCC-----------------------CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHH
Q psy10677 231 PTRELAQQIQAVISIFSRTM-----------------------RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIY 284 (317)
Q Consensus 231 PtreLa~Qi~~~~~~l~~~~-----------------------~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~ 284 (317)
||||||.|+++.++++++.+ ++++.+++||.+...|...++. |||||+ |+
T Consensus 70 PtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~ 145 (844)
T TIGR02621 70 NRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DM 145 (844)
T ss_pred chHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HH
Confidence 99999999999999999865 5999999999999999998876 899995 66
Q ss_pred HhcCC---------------------CCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 285 LQQND---------------------AHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 285 l~~~~---------------------~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
+.++. +.+.+||||| ++ +||.++..+.++
T Consensus 146 i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~ 195 (844)
T TIGR02621 146 IGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LE-PAFQELLKQIMN 195 (844)
T ss_pred HcCCccccccccccccccchhhhhccceEEEEehhh--hc-cccHHHHHHHHH
Confidence 65554 4577899999 78 999998877654
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-20 Score=184.45 Aligned_cols=130 Identities=16% Similarity=0.066 Sum_probs=111.2
Q ss_pred hcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC
Q psy10677 147 LGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220 (317)
Q Consensus 147 ~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~ 220 (317)
...++..+| .| |++|.+||+.++ .+ .+.+ ++|+||||||++|++|++..+..
T Consensus 226 ~~~~~~lpf-~l---------t~~Q~~ai~~I~--~~~~~~~~~~~L----l~g~TGSGKT~va~l~il~~~~~------ 283 (630)
T TIGR00643 226 TKFLASLPF-KL---------TRAQKRVVKEIL--QDLKSDVPMNRL----LQGDVGSGKTLVAALAMLAAIEA------ 283 (630)
T ss_pred HHHHHhCCC-CC---------CHHHHHHHHHHH--HHhccCCCccEE----EECCCCCcHHHHHHHHHHHHHHc------
Confidence 344455677 47 999999999999 54 3578 99999999999999999988753
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH---HHcc----CcEEECcHHHHHHHhcCCCCCC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV---ILLR----ILTSATNTSLGIYLQQNDAHSP 293 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~~~----~ilv~TP~~l~~~l~~~~~~~~ 293 (317)
+.+++|++||++||.|+++.++++...+++++++++||.+..+.. ..+. .|+||||+++.+.+.-..+.+.
T Consensus 284 --g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 284 --GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred --CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceE
Confidence 679999999999999999999999998899999999999876533 3343 3899999999887777899999
Q ss_pred CCchhHH
Q psy10677 294 CLSVWRR 300 (317)
Q Consensus 294 ~lde~d~ 300 (317)
++||+|+
T Consensus 362 VIDEaH~ 368 (630)
T TIGR00643 362 IIDEQHR 368 (630)
T ss_pred EEechhh
Confidence 9999998
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-20 Score=164.15 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=109.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
+||||+|.+|.++..+||.||+.|.+.+++ .+.+.|+|+|+-++.++ |+++|.+|..
T Consensus 205 ~~SATlp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLt 283 (400)
T KOG0328|consen 205 LVSATLPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 283 (400)
T ss_pred EEeccCcHHHHHHHHHhcCCceeEEEecCC-CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHH
Confidence 589999999999999999999999999999 68899999999998766 9999999886
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|+| +||+|+.+||++ |||+|+ ..++.++||++|... +-+|
T Consensus 284 ekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv------~qVslviNYDLP~nr------e~YI 351 (400)
T KOG0328|consen 284 EKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV------QQVSLVINYDLPNNR------ELYI 351 (400)
T ss_pred HHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc------ceeEEEEecCCCccH------HHHh
Confidence 9999999 999999999999 999999 899999999999876 8999
Q ss_pred HHHHHHCCceeecCCC
Q psy10677 115 DSFRKEHNITLIGQNI 130 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~ 130 (317)
|++++.++.+..|..+
T Consensus 352 HRIGRSGRFGRkGvai 367 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAI 367 (400)
T ss_pred hhhccccccCCcceEE
Confidence 9999999998888765
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-20 Score=185.69 Aligned_cols=122 Identities=18% Similarity=0.109 Sum_probs=106.8
Q ss_pred CCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
++|++|.+|++.+. .+ +|++ ++|+||||||++|++|++..+. .+.+++||+||++||.|+
T Consensus 261 ~lt~~Q~~ai~~I~--~d~~~~~~~~~L----l~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 261 ELTGAQKRVVAEIL--ADLASPKPMNRL----LQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEILAEQH 326 (681)
T ss_pred CCCHHHHHHHHHHH--HhhhccCCceEE----EECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHHHHHH
Confidence 35999999999999 65 4789 9999999999999999998875 368999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHH---Hcc----CcEEECcHHHHHHHhcCCCCCCCCchhHHH
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVI---LLR----ILTSATNTSLGIYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~~~----~ilv~TP~~l~~~l~~~~~~~~~lde~d~l 301 (317)
++.++++.+.+++++.+++||.+..+... .+. +|+||||+++.+.+....+.+.++||+|++
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhh
Confidence 99999999999999999999998654433 332 289999999988777789999999999985
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=183.14 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=114.3
Q ss_pred cccC--CCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 136 TLDE--TNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 136 ~f~~--~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.|.. ++....+...+++ .||..+ +|+|.++|+.++ .|+|++ +++|||+|||+||+||++..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sF---------Rp~Q~eaI~aiL--~GrDVL----VimPTGSGKSLcYQLPAL~~- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSF---------RPNQREIINATM--SGYDVF----VLMPTGGGKSLTYQLPALIC- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCccHHHHHHHHHHHc-
Confidence 4554 3344556666655 488888 999999999999 999999 99999999999999999842
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---------CcEEECcHHHH-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---------ILTSATNTSLG- 282 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---------~ilv~TP~~l~- 282 (317)
+..+|||+|+++|+.++...+. . .+++++.+.|+.+..++...+. +||++||++|.
T Consensus 500 ----------~GiTLVISPLiSLmqDQV~~L~---~-~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~ 565 (1195)
T PLN03137 500 ----------PGITLVISPLVSLIQDQIMNLL---Q-ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAK 565 (1195)
T ss_pred ----------CCcEEEEeCHHHHHHHHHHHHH---h-CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhc
Confidence 3579999999999974433332 2 4899999999999887765442 28999999985
Q ss_pred -----HHHh----cCCCCCCCCchhHHHhhhcC--CcHHHHh
Q psy10677 283 -----IYLQ----QNDAHSPCLSVWRRLQDILG--LTEETCV 313 (317)
Q Consensus 283 -----~~l~----~~~~~~~~lde~d~l~~~~g--f~~~~~~ 313 (317)
..+. .+.+.+.++||||.+.+ .| |.++.+.
T Consensus 566 ~d~ll~~L~~L~~~~~LslIVIDEAHcVSq-WGhDFRpdYr~ 606 (1195)
T PLN03137 566 SDSLLRHLENLNSRGLLARFVIDEAHCVSQ-WGHDFRPDYQG 606 (1195)
T ss_pred chHHHHHHHhhhhccccceeccCcchhhhh-cccchHHHHHH
Confidence 2222 24588999999999999 88 6676543
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=175.33 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=103.7
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.||..| +|+|.++||.++ +|+|++ +++|||||||+||++|++.. +..+||++||
T Consensus 7 ~g~~~~---------r~~Q~~ai~~~l--~g~dvl----v~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~ 60 (470)
T TIGR00614 7 FGLSSF---------RPVQLEVINAVL--LGRDCF----VVMPTGGGKSLCYQLPALCS-----------DGITLVISPL 60 (470)
T ss_pred cCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecH
Confidence 477778 999999999999 999999 99999999999999999841 3579999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHH------HHH-hcCCCCCCCCchh
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLG------IYL-QQNDAHSPCLSVW 298 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~------~~l-~~~~~~~~~lde~ 298 (317)
+||+.|+.+.+.. .++.+..+.|+.+..++...+ .+++++||+++. ..+ ..+.+.+.++|||
T Consensus 61 ~~L~~dq~~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 61 ISLMEDQVLQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEA 136 (470)
T ss_pred HHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCC
Confidence 9999998887764 378888888888766544322 128999999864 344 5678999999999
Q ss_pred HHHhhhcC--CcHH
Q psy10677 299 RRLQDILG--LTEE 310 (317)
Q Consensus 299 d~l~~~~g--f~~~ 310 (317)
|.+.+ .| |.++
T Consensus 137 H~i~~-~g~~fr~~ 149 (470)
T TIGR00614 137 HCISQ-WGHDFRPD 149 (470)
T ss_pred cccCc-cccccHHH
Confidence 99988 66 4444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-20 Score=178.01 Aligned_cols=144 Identities=31% Similarity=0.452 Sum_probs=128.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCC-CCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSA-NLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~-~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||||++|+.||..||++|..|.++.. .+.++++|.|.+..|++..|.+.|..+|+
T Consensus 276 m~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~ 355 (519)
T KOG0331|consen 276 MFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCD 355 (519)
T ss_pred EEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHH
Confidence 79999999999999999999999999865 55789999999999999888888888775
Q ss_pred ---------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCH
Q psy10677 59 ---------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTK 111 (317)
Q Consensus 59 ---------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~ 111 (317)
|||+++| .||+|+..|||| |||+|| .++..|+||++|... +
T Consensus 356 ~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi------~dV~lVInydfP~~v------E 423 (519)
T KOG0331|consen 356 ELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV------PDVDLVINYDFPNNV------E 423 (519)
T ss_pred HHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC------ccccEEEeCCCCCCH------H
Confidence 9999999 899999999999 999999 899999999999876 8
Q ss_pred HHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 112 EEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 112 ~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
+|||+..++.++...|.+. ++.+-.+..+...+.+.+++.+-..|
T Consensus 424 dYVHRiGRTGRa~~~G~A~--tfft~~~~~~a~~l~~~l~e~~q~v~ 468 (519)
T KOG0331|consen 424 DYVHRIGRTGRAGKKGTAI--TFFTSDNAKLARELIKVLREAGQTVP 468 (519)
T ss_pred HHHhhcCccccCCCCceEE--EEEeHHHHHHHHHHHHHHHHccCCCC
Confidence 9999999999988888765 55555677888999999988876666
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-19 Score=180.75 Aligned_cols=135 Identities=16% Similarity=0.000 Sum_probs=110.5
Q ss_pred ChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 143 PSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 143 ~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+..+.+.+.+ .+|. | |++|.+||+.++ .+ +|++ ++|+||||||.+|++|++..+..
T Consensus 437 ~~~~~~~~~~~~~f~-~---------T~~Q~~aI~~I~--~d~~~~~~~d~L----l~adTGsGKT~val~a~l~al~~- 499 (926)
T TIGR00580 437 DLEWQQEFEDSFPFE-E---------TPDQLKAIEEIK--ADMESPRPMDRL----VCGDVGFGKTEVAMRAAFKAVLD- 499 (926)
T ss_pred CHHHHHHHHHhCCCC-C---------CHHHHHHHHHHH--hhhcccCcCCEE----EECCCCccHHHHHHHHHHHHHHh-
Confidence 3455555544 4775 8 999999999999 54 7999 99999999999999999988753
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhcC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQN 288 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~~ 288 (317)
+.+++||+||++||.|+++.++++...+++++..++|+.+..++...+. +||||||..+...+.-+
T Consensus 500 -------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 500 -------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred -------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 5799999999999999999999999888999999999988665544332 28999995544344456
Q ss_pred CCCCCCCchhHHH
Q psy10677 289 DAHSPCLSVWRRL 301 (317)
Q Consensus 289 ~~~~~~lde~d~l 301 (317)
++.+.++||+|++
T Consensus 573 ~L~llVIDEahrf 585 (926)
T TIGR00580 573 DLGLLIIDEEQRF 585 (926)
T ss_pred cCCEEEeeccccc
Confidence 8899999999984
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-19 Score=161.89 Aligned_cols=87 Identities=24% Similarity=0.268 Sum_probs=76.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCC---CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCC-----CC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTM---RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQND-----AH 291 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~---~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~-----~~ 291 (317)
.|.++|+-|+||||.|.++++++|..++ .++..++.||.-...|...+++ |+||||||+.+++..+. .+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 3789999999999999999888887765 5788899999999999999988 89999999999999974 45
Q ss_pred CCCCchhHHHhhhcCCcHH
Q psy10677 292 SPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 292 ~~~lde~d~l~~~~gf~~~ 310 (317)
|+++||||-+|. .|..+-
T Consensus 366 FlvlDead~lL~-qgy~d~ 383 (725)
T KOG0349|consen 366 FLVLDEADLLLG-QGYDDK 383 (725)
T ss_pred EEEecchhhhhh-cccHHH
Confidence 789999999999 777654
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-19 Score=162.91 Aligned_cols=144 Identities=21% Similarity=0.290 Sum_probs=131.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|-|||||+.|++||..||++|+.+.++.-++.+...|+|.++...+.+|.+....+..
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LS 482 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLS 482 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhcc
Confidence 5699999999999999999999999999998889999999977778889888776664
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
|||+.+| .|++|.++|||| +||+|+ .|+.+|.||++|..- ++++
T Consensus 483 Sd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv------~DiTHV~NyDFP~nI------eeYV 550 (629)
T KOG0336|consen 483 SDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV------PDITHVYNYDFPRNI------EEYV 550 (629)
T ss_pred chhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc------hhcceeeccCCCccH------HHHH
Confidence 9999999 999999999999 999999 999999999999876 8999
Q ss_pred HHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 115 DSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
|+.+++.+++..|..+ .+.+++|-....+|.+.|.+..-..|
T Consensus 551 HRvGrtGRaGr~G~si--s~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSI--SFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred HHhcccccCCCCcceE--EEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9999999999999877 67788898899999999998877777
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=168.88 Aligned_cols=120 Identities=20% Similarity=0.120 Sum_probs=105.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..+.+.+. .|+ + +.++||+|||++|.+|++..... |.+++|++||++||.|.++++..+.
T Consensus 58 ~~vQlig~~~l~--~G~--I----aem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 58 FDVQLIGGIALH--KGK--I----AEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred cchHHhhhhhhc--CCc--e----eeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 999999999998 887 8 89999999999999999644442 3469999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++++++||.+..++...... |++|||++| .|++..+ .+++.++||+|+|+=
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999999999998777766654 999999999 7887664 577899999999875
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-18 Score=172.00 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=110.7
Q ss_pred CChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC
Q psy10677 142 IPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220 (317)
Q Consensus 142 l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~ 220 (317)
+++...+.|++ .||..| +|+|.++|+.++ .|+|++ +++|||||||+||++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~---------r~~Q~~ai~~il--~g~dvl----v~apTGsGKTl~y~lpal~~--------- 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQF---------RPGQQEIIDAVL--SGRDCL----VVMPTGGGKSLCYQIPALVL--------- 64 (607)
T ss_pred chhHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCchHHHHHHHHHHHc---------
Confidence 44444445554 499999 999999999999 999999 99999999999999999842
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---c----CcEEECcHHHH-----HHHhcC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---R----ILTSATNTSLG-----IYLQQN 288 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~----~ilv~TP~~l~-----~~l~~~ 288 (317)
...+||++||++|+.|+.+.+..+ ++.+.++.++.+..++.... . +++++||+++. +.+...
T Consensus 65 --~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~ 138 (607)
T PRK11057 65 --DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHW 138 (607)
T ss_pred --CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhC
Confidence 246999999999999998887754 67888888888776654332 1 27999999986 344556
Q ss_pred CCCCCCCchhHHHhhhcC--CcHHH
Q psy10677 289 DAHSPCLSVWRRLQDILG--LTEET 311 (317)
Q Consensus 289 ~~~~~~lde~d~l~~~~g--f~~~~ 311 (317)
.+.+.++||||.+.+ .| |.++.
T Consensus 139 ~l~~iVIDEaH~i~~-~G~~fr~~y 162 (607)
T PRK11057 139 NPALLAVDEAHCISQ-WGHDFRPEY 162 (607)
T ss_pred CCCEEEEeCcccccc-ccCcccHHH
Confidence 889999999999988 66 55554
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=167.48 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=102.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..++|.++ .|+ + +.+.||||||++|.+|++.+.. .|++++|++||++||.|.++++..+.
T Consensus 105 ~~VQ~~~~~~ll--~G~--I----ae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 105 FDVQLMGGLALL--SGR--L----AEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred ChHHHHHHHHHh--CCC--e----eeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 999999999999 999 8 8999999999999999998754 36899999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC------------------------------CCCCCCC
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN------------------------------DAHSPCL 295 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~------------------------------~~~~~~l 295 (317)
+.+|+++++++||.+..+....... |++||++.+. |+|..+ .+++..+
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999987655544433 9999999983 554433 3457788
Q ss_pred chhHHHh
Q psy10677 296 SVWRRLQ 302 (317)
Q Consensus 296 de~d~l~ 302 (317)
||+|.+|
T Consensus 249 DEvDSiL 255 (656)
T PRK12898 249 DEADSVL 255 (656)
T ss_pred eccccee
Confidence 9999765
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=170.56 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=102.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..+++.++ +|+ + +.+.||+|||++|++|++..... |++++|++||++||.|.++.+..+.
T Consensus 80 ~~vQl~~~~~l~--~G~--I----aem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 80 YDVQLIGALVLH--EGN--I----AEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred chHHHHhHHHHc--CCc--e----eeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 999999999999 887 8 89999999999999999866653 7799999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-HHHHHHHccC-cEEECcHHH-HHHHhc-----------CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTS-KMYQVILLRI-LTSATNTSL-GIYLQQ-----------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~-~~~~~~~~~~-ilv~TP~~l-~~~l~~-----------~~~~~~~lde~d~l~~ 303 (317)
+.+|+++++++||.+ ..+....... |++||||++ .|+|.. ..+++.++||+|+|+=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi 213 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL 213 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee
Confidence 999999999999999 4444433322 999999999 455554 3567899999999763
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-18 Score=179.53 Aligned_cols=129 Identities=16% Similarity=-0.003 Sum_probs=108.4
Q ss_pred ccCcCCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCC
Q psy10677 149 PMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGD 222 (317)
Q Consensus 149 ~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~ 222 (317)
.....+| .| |++|.+|||.++ .+ +|++ ++|+||||||.+|+.+++..+. .
T Consensus 593 ~~~~~~~-~~---------T~~Q~~aI~~il--~d~~~~~~~d~L----l~a~TGsGKT~val~aa~~~~~--------~ 648 (1147)
T PRK10689 593 FCDSFPF-ET---------TPDQAQAINAVL--SDMCQPLAMDRL----VCGDVGFGKTEVAMRAAFLAVE--------N 648 (1147)
T ss_pred HHHhCCC-CC---------CHHHHHHHHHHH--HHhhcCCCCCEE----EEcCCCcCHHHHHHHHHHHHHH--------c
Confidence 3455567 47 999999999999 66 8999 9999999999999999877653 3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhcCCCCCCCC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQNDAHSPCL 295 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~~~~~~~~l 295 (317)
+++++||+||++||.|+++.++++....++++.+++|+.+..++...+. +|+||||+.+...+..+++.+.++
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 6899999999999999999999988777899999999999887765442 389999976544344468899999
Q ss_pred chhHHH
Q psy10677 296 SVWRRL 301 (317)
Q Consensus 296 de~d~l 301 (317)
||+|++
T Consensus 729 DEahrf 734 (1147)
T PRK10689 729 DEEHRF 734 (1147)
T ss_pred echhhc
Confidence 999996
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=167.44 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=105.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. .|+ + +.++||+|||++|.+|++..+.. |..++|++||++||.|.++++..+.
T Consensus 84 ydvQliGg~~Lh--~G~--I----aem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 84 FDVQLIGGMVLH--EGN--I----AEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred chHHHhhhhhhc--cCc--c----ccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 888887765666 666 6 78999999999999999988763 3469999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++.+++||.+..++...... |++||||+| .|+|..+ .+++.++||+|+||=
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 9999999999999998887776654 999999999 8998876 577899999999874
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=170.53 Aligned_cols=137 Identities=14% Similarity=0.171 Sum_probs=117.3
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
....+..++.+.|...+ .++|.+|+..+. +|+|++ ++++||||||.||++||++++.+++.
T Consensus 55 ~~~~l~~~l~~~g~~~l---------Y~HQ~~A~~~~~--~G~~vv----VtTgTgSGKTe~FllPIld~~l~~~~---- 115 (851)
T COG1205 55 RDESLKSALVKAGIERL---------YSHQVDALRLIR--EGRNVV----VTTGTGSGKTESFLLPILDHLLRDPS---- 115 (851)
T ss_pred hhhHHHHHHHHhccccc---------cHHHHHHHHHHH--CCCCEE----EECCCCCchhHHHHHHHHHHHhhCcC----
Confidence 44556777888888889 999999999999 999999 99999999999999999999998642
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCC--cEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc---------
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMR--IRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ--------- 287 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~--~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~--------- 287 (317)
-+||+|.||++||+.+.+.++++....+ +++...+|+++..+....+.+ ||++||.-|..++-.
T Consensus 116 --a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~ 193 (851)
T COG1205 116 --ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLL 193 (851)
T ss_pred --ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHH
Confidence 3999999999999999999999999887 888999999998877544444 999999877764443
Q ss_pred CCCCCCCCchhH
Q psy10677 288 NDAHSPCLSVWR 299 (317)
Q Consensus 288 ~~~~~~~lde~d 299 (317)
..++++++||++
T Consensus 194 ~~Lk~lVvDElH 205 (851)
T COG1205 194 RNLKYLVVDELH 205 (851)
T ss_pred hcCcEEEEecce
Confidence 268899999863
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-18 Score=167.97 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=107.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCC-CCCcCcEEEEEEccCCC-chhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL-AANPNIKQFVEICHEYE-KPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~~i~q~~~~~~~~~-K~~~L~~ll~-------------------- 58 (317)
|||||||+.++++++.+|++|..|.++.... .+...|+|+|+.|+..+ |.++|.++++
T Consensus 210 lfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l 289 (513)
T COG0513 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEEL 289 (513)
T ss_pred EEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHH
Confidence 6999999999999999999999999985541 37899999999999876 9999999997
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
|||+|+| +|++|+.+|||| |||+|| .++++|+||++|... +.+
T Consensus 290 ~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi------~~v~~VinyD~p~~~------e~y 357 (513)
T COG0513 290 AESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI------PDVSHVINYDLPLDP------EDY 357 (513)
T ss_pred HHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc------cccceeEEccCCCCH------HHh
Confidence 9999999 999999999999 999999 899999999999765 899
Q ss_pred HHHHHHHCCceeecCCC
Q psy10677 114 IDSFRKEHNITLIGQNI 130 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~ 130 (317)
+|+++++.+++-.|..+
T Consensus 358 vHRiGRTgRaG~~G~ai 374 (513)
T COG0513 358 VHRIGRTGRAGRKGVAI 374 (513)
T ss_pred eeccCccccCCCCCeEE
Confidence 99999999988888654
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-17 Score=165.09 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=106.9
Q ss_pred cCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEE
Q psy10677 150 MKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228 (317)
Q Consensus 150 l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~ali 228 (317)
|++ .||..+ +|+|.++|+.++ .|+|++ +++|||+|||+||++|++.+ +..++|
T Consensus 5 l~~~fg~~~f---------r~~Q~~~i~~il--~g~dvl----v~~PTG~GKTl~y~lpal~~-----------~g~~lV 58 (591)
T TIGR01389 5 LKRTFGYDDF---------RPGQEEIISHVL--DGRDVL----VVMPTGGGKSLCYQVPALLL-----------KGLTVV 58 (591)
T ss_pred HHHhcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCccHhHHHHHHHHHc-----------CCcEEE
Confidence 443 588888 999999999999 999999 99999999999999999842 236899
Q ss_pred EcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHH-----HHHhcCCCCCCCCc
Q psy10677 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLG-----IYLQQNDAHSPCLS 296 (317)
Q Consensus 229 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~-----~~l~~~~~~~~~ld 296 (317)
++|+++|+.|+.+.++.+ ++.+..+.|+.+..+....+. +++++||+++. ..+....+.+.++|
T Consensus 59 isPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViD 134 (591)
T TIGR01389 59 ISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVD 134 (591)
T ss_pred EcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEe
Confidence 999999999988887764 678888889888776554332 27999999985 34566789999999
Q ss_pred hhHHHhhhcC--CcHHH
Q psy10677 297 VWRRLQDILG--LTEET 311 (317)
Q Consensus 297 e~d~l~~~~g--f~~~~ 311 (317)
|||.+.+ .| |.++.
T Consensus 135 EaH~i~~-~g~~frp~y 150 (591)
T TIGR01389 135 EAHCVSQ-WGHDFRPEY 150 (591)
T ss_pred CCccccc-ccCccHHHH
Confidence 9999987 55 55544
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-18 Score=154.97 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=108.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||||+.|+++-+..+++|+.|.+...- .+.++++|+|++++...|...|..+++
T Consensus 240 LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~ 318 (476)
T KOG0330|consen 240 LFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLAL 318 (476)
T ss_pred EEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHH
Confidence 699999999999999999999999997665 788899999999999999999999997
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
|||+|+| .|++|...|||| |||+|+ ..+..|+||++|... .+|||
T Consensus 319 ~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi------p~Vd~VVNyDiP~~s------kDYIH 386 (476)
T KOG0330|consen 319 LLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI------PHVDVVVNYDIPTHS------KDYIH 386 (476)
T ss_pred HHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC------CCceEEEecCCCCcH------HHHHH
Confidence 9999999 999999999999 999999 899999999999765 89999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.+++.+++..|..+
T Consensus 387 RvGRtaRaGrsG~~I 401 (476)
T KOG0330|consen 387 RVGRTARAGRSGKAI 401 (476)
T ss_pred HcccccccCCCcceE
Confidence 999999999888765
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-18 Score=158.65 Aligned_cols=143 Identities=27% Similarity=0.348 Sum_probs=127.4
Q ss_pred CcccCCChHHHHHHHHhcCC-CEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSD-PIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||+|++++.++..|+.+ ++.+.|+..+ .+.++|.|.+.+|.+.+|...|.+++.
T Consensus 267 mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 267 LFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred EEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 79999999999999999996 8999999888 789999999999999999999998885
Q ss_pred ---------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccc
Q psy10677 59 ---------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNH 105 (317)
Q Consensus 59 ---------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~ 105 (317)
+||+.+| .|++|++++||| |||+|| .++.+|+||++|.+-
T Consensus 346 t~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi------~~V~hVInyDmP~d~- 418 (482)
T KOG0335|consen 346 TKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDI------PNVKHVINYDMPADI- 418 (482)
T ss_pred ccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCC------CCCceeEEeecCcch-
Confidence 9999998 999999999999 999999 899999999999864
Q ss_pred cCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 106 i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++++|++.++.+..-.|... ++.+-.+.++.+.|.+.|.+.+-..|
T Consensus 419 -----d~YvHRIGRTGR~Gn~G~at--sf~n~~~~~i~~~L~~~l~ea~q~vP 464 (482)
T KOG0335|consen 419 -----DDYVHRIGRTGRVGNGGRAT--SFFNEKNQNIAKALVEILTEANQEVP 464 (482)
T ss_pred -----hhHHHhccccccCCCCceeE--EEeccccchhHHHHHHHHHHhcccCc
Confidence 79999999999988888765 23232345699999999999988888
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-18 Score=157.92 Aligned_cols=117 Identities=26% Similarity=0.379 Sum_probs=110.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||||+.|+.+|+.||.+|+.|.++..+ ...+.|+|.++.+.+++|+..|..++.
T Consensus 457 mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 457 MFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred EEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 799999999999999999999999999998 788899999999999999999998886
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
|||+.+| .||+|...|||| +||+|| .|+++|+||+++... +.+.|
T Consensus 536 ~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI------pnVSlVinydmaksi------eDYtH 603 (673)
T KOG0333|consen 536 ILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI------PNVSLVINYDMAKSI------EDYTH 603 (673)
T ss_pred HHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC------CccceeeecchhhhH------HHHHH
Confidence 9999999 999999999999 999999 899999999998765 89999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+++++.+++-.|..+
T Consensus 604 RIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 604 RIGRTGRAGKSGTAI 618 (673)
T ss_pred HhccccccccCceeE
Confidence 999999999999765
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=169.53 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=92.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCC-----CCCCCceEEEEcCcHHHHHHHHHHHHHHhc------------CCCcEE
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKL-----EEGDGPIALVLAPTRELAQQIQAVISIFSR------------TMRIRH 254 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~-----~~~~~~~alil~PtreLa~Qi~~~~~~l~~------------~~~~~~ 254 (317)
++||||||||+||.||+|+++...... ....++++|||+|||+|+.|+++.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999999865311 123468999999999999999999875321 247999
Q ss_pred EEEECCCCHHHHHHHcc---CcEEECcHHHHHHHhc------CCCCCCCCchhHHHhh
Q psy10677 255 ACLYGGTSKMYQVILLR---ILTSATNTSLGIYLQQ------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 255 ~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~~l~~------~~~~~~~lde~d~l~~ 303 (317)
...+|+++..++...++ +|||+||++|..++.+ ++++++++||+|.|++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 99999999998877665 3999999999988754 3678999999999997
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=157.75 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=96.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..+.+.+. .| .+ +.++||+|||+||++|++.+... ++.++|++||++||.|..+++..+.
T Consensus 72 ydVQlig~l~l~--~G--~I----aem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 72 YDVQVLGAIVLH--QG--NI----AEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cHHHHHHHHHhc--CC--ce----eEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHH
Confidence 888888877777 66 58 89999999999999998876653 4579999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-----HHHHHHH-ccCcEEECcHHH-HHHHhc-----------CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTS-----KMYQVIL-LRILTSATNTSL-GIYLQQ-----------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~-----~~~~~~~-~~~ilv~TP~~l-~~~l~~-----------~~~~~~~lde~d~l~~ 303 (317)
+.+|+++.++++|.. ....... -..|++|||++| .++|.. ..+++.++||||.||-
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 999999999887632 2222222 223999999999 465532 3677999999999965
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-18 Score=154.07 Aligned_cols=175 Identities=21% Similarity=0.194 Sum_probs=133.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||||+.++.+|+..|-.|++|+|++++ +++-+|-|.+.+|..+.|+-.|...|+
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHH
Confidence 799999999999999999999999999999 788899999989988889888888776
Q ss_pred ----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHH
Q psy10677 59 ----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 59 ----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~ 116 (317)
|||++.| .||.|+-.|||| ++|+|+ .++.+|+||++|.+- +.++|+
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDF------p~iqHVINyDMP~eI------ENYVHR 508 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDF------PDIQHVINYDMPEEI------ENYVHR 508 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCC------ccchhhccCCChHHH------HHHHHH
Confidence 9999999 999999999999 999999 899999999999754 677777
Q ss_pred HHHHCCceeecCCCCCCcccccCCCCChhhhcccCc----CCCCCCCcCCCCCCCCchhhhhccccccc--cCcCccccc
Q psy10677 117 FRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKP----KTTNNENNHNKNKKCGDKESKNWTIPLNF--QAKKFISVL 190 (317)
Q Consensus 117 ~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~----~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~--~g~dvi~~~ 190 (317)
++++.+-+..|-+ ++|-+-+-....+-.|+. .+-..| .+++. .+..--
T Consensus 509 IGRTGRsg~~GiA-----TTfINK~~~esvLlDLK~LL~EakQ~vP------------------~~L~~L~~~~E~~--- 562 (610)
T KOG0341|consen 509 IGRTGRSGKTGIA-----TTFINKNQEESVLLDLKHLLQEAKQEVP------------------PVLAELAGPMEEE--- 562 (610)
T ss_pred hcccCCCCCccee-----eeeecccchHHHHHHHHHHHHHhhccCC------------------HHHHHhCCCcccc---
Confidence 7777766666633 577665555554444443 333333 33310 111111
Q ss_pred ceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 191 QKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 191 ~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
-.|.+|.-|-.||+-.+=++|...
T Consensus 563 -~~a~~~~~kGCayCgGLGHRItdC 586 (610)
T KOG0341|consen 563 -TIADAGGEKGCAYCGGLGHRITDC 586 (610)
T ss_pred -ccccCCCccccccccCCCcccccC
Confidence 235666778888887776666554
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-17 Score=145.71 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=109.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||+|-.|+.+.+++|++|..|++- ++ -+...|.|||-+|++++|+.+|..|+.
T Consensus 263 lySATFP~tVk~Fm~~~l~kPy~INLM-~e-Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAk 340 (459)
T KOG0326|consen 263 LYSATFPLTVKGFMDRHLKKPYEINLM-EE-LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK 340 (459)
T ss_pred EEecccchhHHHHHHHhccCcceeehh-hh-hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHH
Confidence 799999999999999999999999985 34 478899999999999999999998885
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+|+.|.| +||+|.++.||| .||+|+ ..+..|+||+.|... |.+.|
T Consensus 341 KITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi------qavNvVINFDfpk~a------EtYLH 408 (459)
T KOG0326|consen 341 KITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI------QAVNVVINFDFPKNA------ETYLH 408 (459)
T ss_pred HHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc------ceeeEEEecCCCCCH------HHHHH
Confidence 9999999 999999999999 999999 888999999999866 89999
Q ss_pred HHHHHCCceeecCCCCCCcccccC
Q psy10677 116 SFRKEHNITLIGQNIPKPVKTLDE 139 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~~~~~~~f~~ 139 (317)
++++.++.+--|-++ .+.+|+|
T Consensus 409 RIGRsGRFGhlGlAI--nLityed 430 (459)
T KOG0326|consen 409 RIGRSGRFGHLGLAI--NLITYED 430 (459)
T ss_pred HccCCccCCCcceEE--EEEehhh
Confidence 999888877667655 3445555
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-16 Score=144.13 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=121.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
|||||+.+.|..++.+.++||..+.+.+++ .+..+|+|+|..|+. .+|++.|..+..
T Consensus 269 LFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~ 347 (477)
T KOG0332|consen 269 LFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLY 347 (477)
T ss_pred eeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHH
Confidence 699999999999999999999999999888 588899999999985 569999998775
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|.- +||.|..+|||+ |||+|+ ..++.|+||++|....-..-.+.++
T Consensus 348 ~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv------~qVs~VvNydlP~~~~~~pD~etYl 421 (477)
T KOG0332|consen 348 EEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV------AQVSVVVNYDLPVKYTGEPDYETYL 421 (477)
T ss_pred HHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc------ceEEEEEecCCccccCCCCCHHHHH
Confidence 9999985 999999999999 999999 8999999999997665555568999
Q ss_pred HHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCc
Q psy10677 115 DSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKP 152 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~ 152 (317)
|+++++++.+..|-.+ +|-+-+-+..+++.+++
T Consensus 422 HRiGRtGRFGkkG~a~-----n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 422 HRIGRTGRFGKKGLAI-----NLVDDKDSMNIMNKIQK 454 (477)
T ss_pred HHhcccccccccceEE-----EeecccCcHHHHHHHHH
Confidence 9999999998888664 46666666666666654
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-16 Score=151.84 Aligned_cols=160 Identities=22% Similarity=0.174 Sum_probs=140.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~~K~~~L~~ll~--------------------- 58 (317)
|||||+|..|+++++..+.+++.|.|+..+ .+..+|+|...+|- +..|+-+++.++.
T Consensus 326 ~FSat~~~~VEE~~~~i~~~~~~vivg~~~-sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 326 LFSATISVYVEEWAELIKSDLKRVIVGLRN-SANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhccccHHHHHHHHHhhccceeEEEecch-hHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 699999999999999999999999999888 67889999988886 4568888888875
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+.+| +||.|++|+|+| +||+|+ +++..|+||+.|... -++
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf------~gvn~VInyD~p~s~------~sy 472 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDF------KGVNLVINYDFPQSD------LSY 472 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccc------cCcceEEecCCCchh------HHH
Confidence 8999998 999999999999 999999 999999999999866 799
Q ss_pred HHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhc
Q psy10677 114 IDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNW 175 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~i 175 (317)
+|+++++++..-.|.++ ++.+=.|+++-..+...+...|++.|++-+.+.+++..+..-+
T Consensus 473 ihrIGRtgRag~~g~Ai--tfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k~~~~~kk~~ 532 (593)
T KOG0344|consen 473 IHRIGRTGRAGRSGKAI--TFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKKLSRLKKKKL 532 (593)
T ss_pred HHHhhccCCCCCCcceE--EEeccccchhhhhHHHHHHHcCCcchHHHHhhhhhhhhhhhhh
Confidence 99999999988888776 4444467777788888899999999988888888888877744
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-16 Score=140.93 Aligned_cols=117 Identities=23% Similarity=0.306 Sum_probs=108.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||+|+++.+++++||++|+.|.++.++ .+.+.|+|+|..+..++|+.+|.++.+
T Consensus 205 l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L 283 (397)
T KOG0327|consen 205 LLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKL 283 (397)
T ss_pred eecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHHHHHH
Confidence 699999999999999999999999999988 578999999999999899999998886
Q ss_pred ---------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHH
Q psy10677 59 ---------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSF 117 (317)
Q Consensus 59 ---------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~ 117 (317)
+||+|.| +|++|..++||+ |||+|+ .+.+.++||++|... +.++|+.
T Consensus 284 ~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv------~~~slvinydlP~~~------~~yihR~ 351 (397)
T KOG0327|consen 284 RAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDV------QQVSLVVNYDLPARK------ENYIHRI 351 (397)
T ss_pred hhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccch------hhcceeeeeccccch------hhhhhhc
Confidence 9999999 999999999999 999999 899999999999765 8999999
Q ss_pred HHHCCceeecCCC
Q psy10677 118 RKEHNITLIGQNI 130 (317)
Q Consensus 118 ~~~~~i~~~g~~~ 130 (317)
.+..+.+..|..+
T Consensus 352 gr~gr~grkg~~i 364 (397)
T KOG0327|consen 352 GRAGRFGRKGVAI 364 (397)
T ss_pred ccccccCCCceee
Confidence 9998888888654
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=152.39 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhc-cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCC
Q psy10677 140 TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNW-TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL 218 (317)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~i-p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~ 218 (317)
..+++.+.+.++..|+... .+-|+.++ +.++ +|+|++ ++||||||||+..++.+++.+.+.
T Consensus 14 ~~~~~~v~~i~~~~~~~el---------~~~qq~av~~~~~--~~~N~l----i~aPTgsGKTlIA~lai~~~l~~~--- 75 (766)
T COG1204 14 VKLDDRVLEILKGDGIDEL---------FNPQQEAVEKGLL--SDENVL----ISAPTGSGKTLIALLAILSTLLEG--- 75 (766)
T ss_pred ccccHHHHHHhccCChHHh---------hHHHHHHhhcccc--CCCcEE----EEcCCCCchHHHHHHHHHHHHHhc---
Confidence 3478888888888888766 55565555 5555 789999 999999999999999999999863
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCC
Q psy10677 219 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSP 293 (317)
Q Consensus 219 ~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~ 293 (317)
+.+++++||+|.||.+.++.++++. .+|+++...+|+.+.......-..|+|+||.++-.++.+. .++++
T Consensus 76 ----~~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lv 150 (766)
T COG1204 76 ----GGKVVYIVPLKALAEEKYEEFSRLE-ELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLV 150 (766)
T ss_pred ----CCcEEEEeChHHHHHHHHHHhhhHH-hcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEE
Confidence 5799999999999999999999544 4699999999999977755454559999999998777764 67899
Q ss_pred CCchhHHHhh
Q psy10677 294 CLSVWRRLQD 303 (317)
Q Consensus 294 ~lde~d~l~~ 303 (317)
++||++.+-|
T Consensus 151 ViDEiH~l~d 160 (766)
T COG1204 151 VIDEIHLLGD 160 (766)
T ss_pred EEeeeeecCC
Confidence 9999987766
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-15 Score=149.12 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=102.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.=.+. +|+ + +.++||+|||+++.+|++-.... |..+-|++||++||.|.++.+..+.
T Consensus 83 ~dvQlig~l~L~--~G~--I----aem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 83 FDVQLIGGMVLH--EGK--I----AEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred CccHHHhhHHhc--CCc--h----hhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 899988876666 775 7 88999999999999999643332 2346699999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++++++||.+..++...... |++|||++| .|+|..+ .+++.++||+|+||=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI 215 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI 215 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee
Confidence 9999999999999999888877644 999999999 8888765 466889999999863
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=143.15 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=114.7
Q ss_pred HHHHHHHHHHCCceeecCCCCCCcccccC---CCCChhhhcccCcCC--CCCCCcCCCCCCCCchhhhhccccccccCcC
Q psy10677 111 KEEIDSFRKEHNITLIGQNIPKPVKTLDE---TNIPSYILGPMKPKT--TNNENNHNKNKKCGDKESKNWTIPLNFQAKK 185 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~~g~~~~~~~~~f~~---~~l~~~l~~~l~~~g--~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~d 185 (317)
.+.+..+.+.+++...= .....+.+. ..+.+.+...+...| ...| ++.|.+|++.++ .+++
T Consensus 66 ~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~---------r~~Q~~av~~~l--~~~~ 131 (501)
T PHA02558 66 VGQLKKFAKNRGYSIWV---DPRIEENEDISREDFDEWVSSLEIYSGNKKIEP---------HWYQYDAVYEGL--KNNR 131 (501)
T ss_pred HHHHHHHHHhcCCeEec---CcccccCCCCCHHHHHhHhhhcccccCCCcCCC---------CHHHHHHHHHHH--hcCc
Confidence 67788888888876522 112222222 122233333333222 3467 999999999999 8999
Q ss_pred cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH
Q psy10677 186 FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 265 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 265 (317)
.+ ++||||||||+++..-+ ..+... ...++|||+||+||+.|+.+.++++.......+..++||....
T Consensus 132 ~i----l~apTGsGKT~i~~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~- 199 (501)
T PHA02558 132 RL----LNLPTSAGKSLIQYLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD- 199 (501)
T ss_pred eE----EEeCCCCCHHHHHHHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-
Confidence 99 99999999999765422 222221 2358999999999999999999998865455666777776543
Q ss_pred HHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHHhh
Q psy10677 266 QVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 266 ~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~ 303 (317)
.-..|+|+||+++.+.... +.+.+.++||+|.+..
T Consensus 200 ---~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~ 236 (501)
T PHA02558 200 ---TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTG 236 (501)
T ss_pred ---CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccc
Confidence 1134999999999876532 4788999999999876
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.6e-15 Score=147.30 Aligned_cols=128 Identities=10% Similarity=-0.036 Sum_probs=96.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHH---------HHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT---------YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQ 238 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla---------~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Q 238 (317)
..+|.+++|.++ +|+|++ ++|+||||||.+ |++|.+..+.+.. ....+.+++|++||||||.|
T Consensus 166 ~~iQ~qil~~i~--~gkdvI----v~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 166 PDVQLKIFEAWI--SRKPVV----LTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred HHHHHHHHHHHH--hCCCEE----EECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHH
Confidence 347899999999 999999 999999999997 6677777664321 02245799999999999999
Q ss_pred HHHHHHHHhcC---CCcEEEEEECCCCHHHHHHHc--cCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcC
Q psy10677 239 IQAVISIFSRT---MRIRHACLYGGTSKMYQVILL--RILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILG 306 (317)
Q Consensus 239 i~~~~~~l~~~---~~~~~~~~~gg~~~~~~~~~~--~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~g 306 (317)
+...+.+..+. .++.+.+.+||.+........ ..++|+|++... ..-..+.+.++||||++.+ ++
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l--~~L~~v~~VVIDEaHEr~~-~~ 307 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL--NKLFDYGTVIIDEVHEHDQ-IG 307 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc--cccccCCEEEccccccCcc-ch
Confidence 99999887654 367888999999842222222 238999987422 2335788999999999876 44
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-15 Score=138.64 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=105.3
Q ss_pred CcccCCChHHHHHHHHhcC-CCEEEEEcCCCC-CCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLS-DPIQLNVGSANL-AANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~-~p~~i~v~~~~~-~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
|||||+|.+|+++++-.|+ ||+.|++...+. .+++.++|-|+.++.+.++.+|..+|+
T Consensus 266 LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 266 LFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred EeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHH
Confidence 7999999999999999997 799998765443 678999999999999888888888886
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
|||+++| +|++.+..|||| |||+|+ .++..++.|+.|++. ++
T Consensus 346 ~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~------P~V~~VvQ~~~P~d~------~~ 413 (543)
T KOG0342|consen 346 HAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI------PDVDWVVQYDPPSDP------EQ 413 (543)
T ss_pred HHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC------CCceEEEEeCCCCCH------HH
Confidence 9999999 999999999999 999999 899999999999876 89
Q ss_pred HHHHHHHHCCceeecCCC
Q psy10677 113 EIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~ 130 (317)
|||+++++.+.+..|...
T Consensus 414 YIHRvGRTaR~gk~G~al 431 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKAL 431 (543)
T ss_pred HHHHhccccccCCCceEE
Confidence 999999999966677653
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-14 Score=146.28 Aligned_cols=134 Identities=15% Similarity=0.051 Sum_probs=109.3
Q ss_pred CCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCC--CCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 164 NKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPK--LEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 164 ~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~--~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
++.|+.+|+.++|.++. +..|++ +|||||||||..|+|.||+.+.+... ....++.+.++++|+++||..+.+
T Consensus 108 f~~fN~iQS~vFp~aY~-SneNML----IcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 108 FEEFNRIQSEVFPVAYK-SNENML----ICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred HHHHHHHHHHhhhhhhc-CCCCEE----EECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 34559999999999996 788999 99999999999999999999986321 112357899999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc---------CCCCCCCCchhHHHhh
Q psy10677 242 VISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ---------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~---------~~~~~~~lde~d~l~~ 303 (317)
.+.+-...+|+++..++|++........--.|||+||.+. |.+.+ +.+.++.+||.+-|-|
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC
Confidence 9888888889999999999988766644444999999864 44443 3677889999876655
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-14 Score=143.90 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=96.8
Q ss_pred CCCCchhhhhcccccccc---CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLNFQ---AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~---g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..+|+.|.+++..+. + +++++ +.|+||||||.+|+.++...+.. +.++|||+||++|+.|+++
T Consensus 143 ~~Lt~~Q~~ai~~i~--~~~~~~~~L----l~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~ 208 (679)
T PRK05580 143 PTLNPEQAAAVEAIR--AAAGFSPFL----LDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLA 208 (679)
T ss_pred CCCCHHHHHHHHHHH--hccCCCcEE----EECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHH
Confidence 357999999999999 6 37888 99999999999999988776653 5689999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 242 VISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
.+++.. +.+++.++||.+..++...+. +|+||||+.+. +.-.++.+.++||++.
T Consensus 209 ~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 209 RFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--LPFKNLGLIIVDEEHD 269 (679)
T ss_pred HHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--ccccCCCEEEEECCCc
Confidence 888743 578999999998776654332 38999999885 3446789999999875
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-15 Score=138.29 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=102.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC---CCchhhhhhhcc-------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE---YEKPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~---~~K~~~L~~ll~------------------- 58 (317)
||||||.++|.+|+..-|++|+.|.|.+.. .+...+.|.|+.+.. .++-..|..|+.
T Consensus 363 LFSATMteeVkdL~slSL~kPvrifvd~~~-~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHR 441 (691)
T KOG0338|consen 363 LFSATMTEEVKDLASLSLNKPVRIFVDPNK-DTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHR 441 (691)
T ss_pred eehhhhHHHHHHHHHhhcCCCeEEEeCCcc-ccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHH
Confidence 799999999999999999999999998877 677889999887652 235454444443
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
|||.++| .|+.+++.+||| |||+|| ..+..|+||.+|... +.
T Consensus 442 l~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI------~gV~tVINy~mP~t~------e~ 509 (691)
T KOG0338|consen 442 LRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI------EGVQTVINYAMPKTI------EH 509 (691)
T ss_pred HHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc------cceeEEEeccCchhH------HH
Confidence 9999999 999999999999 999999 899999999999866 89
Q ss_pred HHHHHHHHCCceeecCCC
Q psy10677 113 EIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~ 130 (317)
|+|+.+++.+++..|..+
T Consensus 510 Y~HRVGRTARAGRaGrsV 527 (691)
T KOG0338|consen 510 YLHRVGRTARAGRAGRSV 527 (691)
T ss_pred HHHHhhhhhhcccCcceE
Confidence 999999999999988876
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=115.00 Aligned_cols=124 Identities=27% Similarity=0.285 Sum_probs=101.7
Q ss_pred CchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++.|.++++.++ .+ +.++ +.++||||||.+++.+++..+.... ...++|++||+.++.|..+.+.++
T Consensus 10 ~~~Q~~~~~~~~--~~~~~~~----i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 10 RPYQKEAIEALL--SGLRDVI----LAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CHHHHHHHHHHH--cCCCcEE----EECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 999999999999 88 8999 9999999999999999999886532 458999999999999999999998
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcCC-----CCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQND-----AHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~ 303 (317)
............++.........+. .++++|++.+.+.+.... +.+.++||++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 8765545555666665433333222 489999999999888854 66889999999886
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-14 Score=134.29 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=106.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCC-CCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL-AANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||+.++|.+|++..|+||+.|+|+.... .++..+..+|..|+..+|...|.++|.
T Consensus 193 LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~ 272 (567)
T KOG0345|consen 193 LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFG 272 (567)
T ss_pred cccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHH
Confidence 7999999999999999999999999987662 267889999999999999999999996
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||.|+| .|+..+-.+|+| |||+|| .+++.|+.|++|.+. ..
T Consensus 273 ~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi------p~iD~VvQ~DpP~~~------~~ 340 (567)
T KOG0345|consen 273 KLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI------PGIDLVVQFDPPKDP------SS 340 (567)
T ss_pred HHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC------CCceEEEecCCCCCh------hH
Confidence 9999999 899988899988 999999 889999999999865 67
Q ss_pred HHHHHHHHCCceeecCCC
Q psy10677 113 EIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~ 130 (317)
=+|+-+++.+.+..|.++
T Consensus 341 FvHR~GRTaR~gr~G~Ai 358 (567)
T KOG0345|consen 341 FVHRCGRTARAGREGNAI 358 (567)
T ss_pred HHhhcchhhhccCccceE
Confidence 789999999988888765
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=140.34 Aligned_cols=120 Identities=16% Similarity=0.073 Sum_probs=102.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. +|+ + +.++||+|||++|.+|++...+. |..+.|++||++||.|..+++..+.
T Consensus 84 ydVQliGgl~L~--~G~--I----aEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 84 FDVQLLGGMVLD--SNR--I----AEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CchHHhcchHhc--CCc--c----ccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 888887665555 665 6 78999999999999999987764 3459999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHcc-CcEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLR-ILTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~-~ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++.+++||.+..+...... .|++|||+++ .|+|..+ .+++.++||+|.||.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 999999999999999877666543 4999999999 8888775 455788999999876
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-14 Score=133.73 Aligned_cols=143 Identities=22% Similarity=0.275 Sum_probs=119.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCC-Cchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEY-EKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~-~K~~~L~~ll~--------------------- 58 (317)
||||||+..|+++++.+|.||+.|..+.-+ .+++.|.|.+.+|++. +|.+-|.+-|-
T Consensus 406 lFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i 484 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEI 484 (731)
T ss_pred EeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHH
Confidence 799999999999999999999998887666 6889999999999864 46665553331
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+|.| +|+++..+|||| |||+|| .+...|+||++..+- +-.
T Consensus 485 ~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI------~~ikTVvnyD~ardI------dth 552 (731)
T KOG0339|consen 485 AANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI------PSIKTVVNYDFARDI------DTH 552 (731)
T ss_pred HHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc------cccceeecccccchh------HHH
Confidence 9999998 999999999999 999999 788999999976544 567
Q ss_pred HHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 114 IDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
.|++.++.+..-+|.. .++.+-.|..+.-+|+++|...|-..|
T Consensus 553 thrigrtgRag~kGva--yTlvTeKDa~fAG~LVnnLe~agQnVP 595 (731)
T KOG0339|consen 553 THRIGRTGRAGEKGVA--YTLVTEKDAEFAGHLVNNLEGAGQNVP 595 (731)
T ss_pred HHHhhhccccccccee--eEEechhhHHHhhHHHHHHhhccccCC
Confidence 8888888888777754 366677777788889999988888777
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-14 Score=144.63 Aligned_cols=151 Identities=19% Similarity=0.281 Sum_probs=135.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~~K~~~L~~ll~--------------------- 58 (317)
|||||+|..++.+|++.|+.|+.|.|+... ...+.|+|.+.+|. +.+|+..|..||.
T Consensus 551 lfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l 629 (997)
T KOG0334|consen 551 LFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADAL 629 (997)
T ss_pred hhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHH
Confidence 699999999999999999999999999777 78999999999999 8889999999986
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
|||+.+| .||+|.+.+||| |||+|+ .+...|+||+.|+.. +.+
T Consensus 630 ~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv------~~l~Lvvnyd~pnh~------edy 697 (997)
T KOG0334|consen 630 LRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV------KELILVVNYDFPNHY------EDY 697 (997)
T ss_pred HHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc------ccceEEEEcccchhH------HHH
Confidence 9999999 999999999999 999999 899999999999865 679
Q ss_pred HHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhc
Q psy10677 114 IDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNW 175 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~i 175 (317)
+|+..++.+..-.|..+ ++.+++++.....|.++|...+-..| -+.|..+-
T Consensus 698 vhR~gRTgragrkg~Av--tFi~p~q~~~a~dl~~al~~~~~~~P---------~~l~~l~~ 748 (997)
T KOG0334|consen 698 VHRVGRTGRAGRKGAAV--TFITPDQLKYAGDLCKALELSKQPVP---------KLLQALSE 748 (997)
T ss_pred HHHhcccccCCccceeE--EEeChHHhhhHHHHHHHHHhccCCCc---------hHHHHHHH
Confidence 99999999999899655 77788899999999999977788888 77765443
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-13 Score=128.27 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=106.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|.|||++++|+.|.+.+|++|+.+.+...++..+.++.||++.|++.+|+.+|..+++
T Consensus 206 LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLk 285 (569)
T KOG0346|consen 206 LMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLK 285 (569)
T ss_pred eehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHH
Confidence 5799999999999999999999999998886667899999999999999999998886
Q ss_pred ------------CCCCccc--------eeecCcccceec---------------------------------------cc
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS---------------------------------------AV 79 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva---------------------------------------ar 79 (317)
|+|++++ +|..|-+.++|| +|
T Consensus 286 LfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsR 365 (569)
T KOG0346|consen 286 LFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSR 365 (569)
T ss_pred HHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhc
Confidence 8999998 999999999998 68
Q ss_pred ccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 80 SFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 80 g~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
|+|+ ..+.+|.||++|... .+|||+.+++.+..-.|...
T Consensus 366 GIDF------~~V~~VlNFD~P~t~------~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 366 GIDF------HHVSNVLNFDFPETV------TSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred cccc------hheeeeeecCCCCch------HHHHHhccccccCCCCCceE
Confidence 8888 899999999999876 89999999888887777653
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-13 Score=141.71 Aligned_cols=112 Identities=16% Similarity=0.037 Sum_probs=87.9
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-HhcCCCcE
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI-FSRTMRIR 253 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l~~~~~~~ 253 (317)
+..+. ++++++ ++|+||||||++|.+|+++... .+.+++|+.|||++|.|+++.+.. +....|..
T Consensus 14 ~~~l~--~~~~vv----v~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 14 LTALK--TAPQVL----LKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHH--hCCCEE----EEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 34445 788999 9999999999999999997532 134899999999999999999854 45556778
Q ss_pred EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH-Hhh
Q psy10677 254 HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR-LQD 303 (317)
Q Consensus 254 ~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~-l~~ 303 (317)
+...+++.+.... -..|+|+|||+|+++++. ..+.+.++||+|+ .++
T Consensus 80 VGy~vr~~~~~~~---~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~ 131 (812)
T PRK11664 80 VGYRMRAESKVGP---NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQ 131 (812)
T ss_pred EEEEecCccccCC---CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccc
Confidence 8887777653221 124999999999999886 4678899999996 444
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-14 Score=139.45 Aligned_cols=144 Identities=26% Similarity=0.375 Sum_probs=119.6
Q ss_pred CcccCCChHHHHHHHHhcC-CCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLS-DPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~-~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
+||||||++++.+++.++. +|+.+.++...+....+++|.++.+++.+|...|..++.
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 5899999999999999996 699999887665567889999999988888887776663
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... ++
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi------~~v~~VI~~d~P~s~------~~ 460 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV------KDVKYVINFDFPNQI------ED 460 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc------ccCCEEEEeCCCCCH------HH
Confidence 8999998 899999999999 999999 899999999999765 78
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++++.++..+....|..+ .+.+-++..+...+++.|++.+-..|
T Consensus 461 yvqRiGRtGR~G~~G~ai--~~~~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 461 YVHRIGRTGRAGAKGASY--TFLTPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred HHHHhcccccCCCCceEE--EEECcchHHHHHHHHHHHHHccCCCC
Confidence 999999888877666543 33344555677788888888877777
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-13 Score=136.16 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=101.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+.|.+++..++ .+ |++ +++|||+|||+++++++...+.. .+.++|||+||++|+.|..+.++++.
T Consensus 17 r~yQ~~~~~~~l--~~-n~l----v~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 17 RLYQQLLAATAL--KK-NTL----VVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred cHHHHHHHHHHh--cC-CeE----EEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 899999998888 66 899 99999999999999999988742 35699999999999999999999987
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
...+.++..++|+.+..+....+.. |+|+||+.+...+..+ .+++.++|||+++..
T Consensus 83 ~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~ 145 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVG 145 (773)
T ss_pred CCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccc
Confidence 6556688888998887765544433 8999999998766554 466889999998754
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-14 Score=137.97 Aligned_cols=143 Identities=22% Similarity=0.298 Sum_probs=118.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|.+++.++..++.+|..|.++... .....++|.+++++..+|...|..++.
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 589999999999999999999999998776 677889999998887777666555542
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... ++
T Consensus 384 ~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi------p~v~~VI~~d~P~s~------~~ 451 (518)
T PLN00206 384 ANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL------LRVRQVIIFDMPNTI------KE 451 (518)
T ss_pred HHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc------ccCCEEEEeCCCCCH------HH
Confidence 8999998 999999999999 999999 899999999998754 78
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++++.+|.++.+..|..+ .+.+-++..+-..+++.|+..|-..|
T Consensus 452 yihRiGRaGR~g~~G~ai--~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 452 YIHQIGRASRMGEKGTAI--VFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred HHHhccccccCCCCeEEE--EEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 999999988887666554 33344555566778888888776666
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-13 Score=126.03 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=85.8
Q ss_pred hhhhhccccccccCcC--cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 170 KESKNWTIPLNFQAKK--FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~d--vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|.++++.+. .+.+ ++ ++||||||||.||++|++.. +.++++++||++|+.|+++.++.+.
T Consensus 1 hQ~~~~~~~~--~~~~~~~~----i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 1 HQVATFEALQ--SKDADIIF----NTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred CHHHHHHHHH--cCCCCEEE----EECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHH
Confidence 5999999999 7764 78 89999999999999999841 2468999999999999999999987
Q ss_pred cCC----CcEEEEEECCCCHHHHH-------------------HH----ccCcEEECcHHHHHHHhc-------------
Q psy10677 248 RTM----RIRHACLYGGTSKMYQV-------------------IL----LRILTSATNTSLGIYLQQ------------- 287 (317)
Q Consensus 248 ~~~----~~~~~~~~gg~~~~~~~-------------------~~----~~~ilv~TP~~l~~~l~~------------- 287 (317)
..+ ++.+..+.|.+..+... .. -..|+++||..+..++..
T Consensus 64 ~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~ 143 (357)
T TIGR03158 64 DVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY 143 (357)
T ss_pred HhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh
Confidence 533 56667776653322000 01 122688888877655432
Q ss_pred CCCCCCCCchhHHHh
Q psy10677 288 NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 288 ~~~~~~~lde~d~l~ 302 (317)
..+++.++||++.+-
T Consensus 144 ~~~~~iV~DE~H~~~ 158 (357)
T TIGR03158 144 TKFSTVIFDEFHLYD 158 (357)
T ss_pred cCCCEEEEecccccC
Confidence 467888999987743
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-13 Score=130.81 Aligned_cols=168 Identities=20% Similarity=0.171 Sum_probs=124.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcC-CCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGS-ANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~-~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||-.+.|.++|+..++||.+|.|.. +..+++.+++|+|+.|+-.+|++.|+.+++
T Consensus 251 LFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 251 LFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred eeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHH
Confidence 7999999999999999999999999873 324778999999999999999999999996
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
|||.|+| +|-+.+.-||+| |||+|+ .-+.-|+.++.|.+. +.
T Consensus 331 e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF------paVdwViQ~DCPedv------~t 398 (758)
T KOG0343|consen 331 EAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF------PAVDWVIQVDCPEDV------DT 398 (758)
T ss_pred HHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC------cccceEEEecCchhH------HH
Confidence 9999999 899989999999 999999 555568889988866 78
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcc
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFI 187 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi 187 (317)
|||+.+++.+..-+|...- +.+-++ .+.++..|++.++..-+-....++++.++.+.-..+. +..++-
T Consensus 399 YIHRvGRtAR~~~~G~sll--~L~psE---eE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~--~~~eLk 466 (758)
T KOG0343|consen 399 YIHRVGRTARYKERGESLL--MLTPSE---EEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLA--KDPELK 466 (758)
T ss_pred HHHHhhhhhcccCCCceEE--EEcchh---HHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHh--hCHHHH
Confidence 9999999998888886531 111111 1235555665554322222223455666554433333 444443
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-13 Score=125.35 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=77.8
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKM 264 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 264 (317)
|++ ++||||||||++|++|++..+.+. .+.+++|++||++|+.|+++.++.+... .+..++|+....
T Consensus 1 ~vv----i~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLV----IEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFK 67 (358)
T ss_pred CEE----EEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHH
Confidence 467 999999999999999999886542 3579999999999999999999997542 233334432210
Q ss_pred -----------HHH----------HHccCcEEECcHHHHHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 265 -----------YQV----------ILLRILTSATNTSLGIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 265 -----------~~~----------~~~~~ilv~TP~~l~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
... .....|+|+||+++...+..+ ...+.++||+|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~ 138 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDE 138 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCH
Confidence 000 012238999999998876652 236789999999887
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-13 Score=135.45 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=87.4
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HHhcCCCcE
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIR 253 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~-~l~~~~~~~ 253 (317)
+..+. ++.+++ ++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+. .+....|..
T Consensus 11 ~~~l~--~~~~vI----i~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 11 RDALA--AHPQVV----LEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHH--cCCcEE----EECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 34445 788999 9999999999999999998752 24689999999999999999885 444455667
Q ss_pred EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhH-HHhh
Q psy10677 254 HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWR-RLQD 303 (317)
Q Consensus 254 ~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d-~l~~ 303 (317)
+...+++.+.. ..-.+|+|+|||+|+++++. ..+++.++||+| ++++
T Consensus 77 VGy~vr~~~~~---s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 77 VGYRVRGENKV---SRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLD 128 (819)
T ss_pred EEEEEcccccc---CCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhc
Confidence 76666654321 11234999999999999886 367899999999 5776
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-13 Score=132.34 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=102.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||+|+.+..+++.|+++|..|.+.... ....++.|.|+.+...+|.+.|.+++.
T Consensus 185 lfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~ 263 (629)
T PRK11634 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAE 263 (629)
T ss_pred EEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHH
Confidence 699999999999999999999999887666 567789999998888888888877764
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|+.|... +.+++
T Consensus 264 ~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi------p~V~~VI~~d~P~~~------e~yvq 331 (629)
T PRK11634 264 ALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV------ERISLVVNYDIPMDS------ESYVH 331 (629)
T ss_pred HHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc------ccCCEEEEeCCCCCH------HHHHH
Confidence 8999998 899999999999 999999 899999999999755 78999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+..+..+..-.|..+
T Consensus 332 RiGRtGRaGr~G~ai 346 (629)
T PRK11634 332 RIGRTGRAGRAGRAL 346 (629)
T ss_pred HhccccCCCCcceEE
Confidence 999988877666543
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-13 Score=121.12 Aligned_cols=117 Identities=19% Similarity=0.117 Sum_probs=102.6
Q ss_pred CcccCCChHHHHHHHHhcCC--CEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSD--PIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
|||||+.+.++++..--.+. +...++.+.. ++.+.+.|.|+.|+.+.|-..|.++|+
T Consensus 189 lfSATitd~i~ql~~~~i~k~~a~~~e~~~~v-stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 189 LFSATITDTIKQLFGCPITKSIAFELEVIDGV-STVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred EEEeehhhHHHHhhcCCcccccceEEeccCCC-CchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 69999999999887665554 4445554444 788999999999999999999998886
Q ss_pred ----------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCC
Q psy10677 59 ----------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKT 110 (317)
Q Consensus 59 ----------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~ 110 (317)
+||.|+| +||++.+++||| +||+|| ..++.|+||++|.+.
T Consensus 268 Q~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI------P~V~LVvN~diPr~P------ 335 (442)
T KOG0340|consen 268 QLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI------PTVELVVNHDIPRDP------ 335 (442)
T ss_pred HHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC------CceeEEEecCCCCCH------
Confidence 9999999 999999999999 999999 899999999999876
Q ss_pred HHHHHHHHHHCCceeecCCC
Q psy10677 111 KEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~~g~~~ 130 (317)
..+||+.+++.+++..|..+
T Consensus 336 ~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 336 KDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred HHHHHhhcchhcccCCcceE
Confidence 79999999999999999876
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=127.40 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=100.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|+.++.++..++++|..+.+.... ....++|+++.++..+|.+.|.+++.
T Consensus 183 l~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 183 LFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred EEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHH
Confidence 589999999999999999999999887654 44569999999998889988888775
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.++||| +||+|+ .++..+++|++|... +.+++
T Consensus 261 ~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi------~~v~~VI~~d~p~~~------~~yiq 328 (460)
T PRK11776 261 ALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI------KALEAVINYELARDP------EVHVH 328 (460)
T ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch------hcCCeEEEecCCCCH------hHhhh
Confidence 8999998 999999999999 999999 899999999999754 68899
Q ss_pred HHHHHCCceeecCC
Q psy10677 116 SFRKEHNITLIGQN 129 (317)
Q Consensus 116 ~~~~~~~i~~~g~~ 129 (317)
+.++..+....|..
T Consensus 329 R~GRtGR~g~~G~a 342 (460)
T PRK11776 329 RIGRTGRAGSKGLA 342 (460)
T ss_pred hcccccCCCCcceE
Confidence 98888887666644
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-12 Score=125.65 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=106.7
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
++|.-|.+++..|.+ .+...+.|+|| |..|||||+..++.++.-+.. |.++..++||.-||.|.++.+
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQ--GDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQ--GDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEILAEQHYESL 331 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhc--cCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHHHHHHHHHHH
Confidence 449999999999874 23445666666 999999999999999988763 789999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
.++...+|++++.++|..........+.. ++|||..-+.|-+...++.+.++||.+|
T Consensus 332 ~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 332 RKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEecccc
Confidence 99999999999999998876655544433 6999999999988999999999998765
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=94.37 Aligned_cols=105 Identities=30% Similarity=0.272 Sum_probs=86.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL- 270 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~- 270 (317)
+.++||||||..++..+....... ...+++|++|++.++.|..+.+...... ++.+..+.++.....+....
T Consensus 5 i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 5 LAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred EECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhc
Confidence 899999999999999988876642 3579999999999999999999998876 77888887776665544222
Q ss_pred --cCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 271 --RILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 271 --~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
..++++|++.+...+... ...+.++||++.+..
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~ 117 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh
Confidence 228999999999887764 688899999999887
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-12 Score=124.72 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=101.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|..+++++..++++|..+.+.... ....+++|.++++...+|...|..+++
T Consensus 195 l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 273 (423)
T PRK04837 195 LFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWG 273 (423)
T ss_pred EEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 589999999999999999999999887766 566789998888877788888877763
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.++||| +||+|+ .++..|++|++|... +++++
T Consensus 274 ~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi------p~v~~VI~~d~P~s~------~~yiq 341 (423)
T PRK04837 274 HLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI------PAVTHVFNYDLPDDC------EDYVH 341 (423)
T ss_pred HHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc------cccCEEEEeCCCCch------hheEe
Confidence 9999998 899999999999 999999 899999999999754 68889
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.++..+.+-.|..+
T Consensus 342 R~GR~gR~G~~G~ai 356 (423)
T PRK04837 342 RIGRTGRAGASGHSI 356 (423)
T ss_pred ccccccCCCCCeeEE
Confidence 988888887666554
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=115.27 Aligned_cols=120 Identities=15% Similarity=0.000 Sum_probs=101.6
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
...|......++ .+ |++ ++.|||-|||+..++-+..++... .+ ++|+|+||+-|+.|..+.|+++.
T Consensus 17 R~YQ~~i~a~al--~~-NtL----vvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 17 RLYQLNIAAKAL--FK-NTL----VVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred HHHHHHHHHHHh--hc-CeE----EEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHh
Confidence 666776666666 44 888 999999999999999999888764 34 89999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcCCCC-----CCCCchhHHH
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQNDAH-----SPCLSVWRRL 301 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~~~~-----~~~lde~d~l 301 (317)
....-.++.++|..+..+....+.+ |+|+||..+.+-|..|.++ +.+.|||+|-
T Consensus 83 ~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA 143 (542)
T COG1111 83 GIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred CCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhc
Confidence 8777889999999999988887765 9999999999999988655 5567788763
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-12 Score=125.23 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=100.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++.+++.++..++.+|..+.+.... ....++.|++..++..+|.+.|..++.
T Consensus 185 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 185 LFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred EEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHH
Confidence 589999999999999999999998887666 466789999888887777777776663
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... +++++
T Consensus 264 ~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi------p~v~~VI~~~~P~~~------~~yvq 331 (456)
T PRK10590 264 QLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI------EELPHVVNYELPNVP------EDYVH 331 (456)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc------ccCCEEEEeCCCCCH------HHhhh
Confidence 9999998 899999999999 999999 899999999998754 68999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.++..+....|..+
T Consensus 332 R~GRaGR~g~~G~ai 346 (456)
T PRK10590 332 RIGRTGRAAATGEAL 346 (456)
T ss_pred hccccccCCCCeeEE
Confidence 999888877666544
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-12 Score=125.78 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=100.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++..+..++..+|.+|..+.+.... .....+.|.++.+...+|...|..++.
T Consensus 197 l~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~ 275 (572)
T PRK04537 197 LFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVAR 275 (572)
T ss_pred EEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHH
Confidence 599999999999999999999888776665 466789999988888888888877764
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|++ .|++|+.+|||| +||+|+ .++..+++|++|... +++++
T Consensus 276 ~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi------p~V~~VInyd~P~s~------~~yvq 343 (572)
T PRK04537 276 TLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI------DGVKYVYNYDLPFDA------EDYVH 343 (572)
T ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc------cCCCEEEEcCCCCCH------HHHhh
Confidence 9999998 999999999999 999999 899999999998654 78999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+..+..+....|..+
T Consensus 344 RiGRaGR~G~~G~ai 358 (572)
T PRK04537 344 RIGRTARLGEEGDAI 358 (572)
T ss_pred hhcccccCCCCceEE
Confidence 999888876666554
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-11 Score=116.76 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=122.6
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..+++.+|+.+.+.|+..|++.. .|+|..|+.. ++ .|.|.+ +.++|+||||+.--++-+.++..
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eL---------lPVQ~laVe~GLL--eG~nll----VVSaTasGKTLIgElAGi~~~l~ 259 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEEL---------LPVQVLAVEAGLL--EGENLL----VVSATASGKTLIGELAGIPRLLS 259 (830)
T ss_pred cccccCCcHHHHHHHHhcCccee---------cchhhhhhhhccc--cCCceE----EEeccCCCcchHHHhhCcHHHHh
Confidence 56899999999999999999999 9999999977 67 999999 99999999999999999988875
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhc
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQ 287 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~ 287 (317)
.|-+.|+|+|.-+||+|-|+.++.--..+++++..-+|-.-......-.. +|||||=.-+-.+|..
T Consensus 260 -------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt 332 (830)
T COG1202 260 -------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT 332 (830)
T ss_pred -------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc
Confidence 36789999999999999999999877888999888777554433321111 1999999988888877
Q ss_pred C----CCCCCCCchhHHHhh
Q psy10677 288 N----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 288 ~----~~~~~~lde~d~l~~ 303 (317)
+ ++...++||.+.|-|
T Consensus 333 g~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 333 GKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred CCcccccceEEeeeeeeccc
Confidence 4 677888998877655
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=114.64 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=104.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+-|.++|..++ +|+|++ +.-|||.||++||.+|.+-. .| -.||++|.-.|-..+.+.++..
T Consensus 19 R~gQ~evI~~~l--~g~d~l----vvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 19 RPGQQEIIDALL--SGKDTL----VVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred CCCHHHHHHHHH--cCCcEE----EEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHHHHHHc-
Confidence 999999999999 999999 99999999999999999843 23 7999999888886655555443
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHH-----HHHHhcCCCCCCCCchhHHHhhhcC--CcHHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSL-----GIYLQQNDAHSPCLSVWRRLQDILG--LTEETCV 313 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l-----~~~l~~~~~~~~~lde~d~l~~~~g--f~~~~~~ 313 (317)
|++++++.+..+.++....+.. ++.-+|.+| .+.++...+.+.++|||+.+-+ -| |.|+-++
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSq-WGhdFRP~Y~~ 156 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQ-WGHDFRPDYRR 156 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhh-cCCccCHhHHH
Confidence 7899999999888777655544 688889887 4788889999999999999999 88 8888765
Q ss_pred h
Q psy10677 314 N 314 (317)
Q Consensus 314 ~ 314 (317)
.
T Consensus 157 l 157 (590)
T COG0514 157 L 157 (590)
T ss_pred H
Confidence 3
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=119.44 Aligned_cols=140 Identities=13% Similarity=0.029 Sum_probs=108.0
Q ss_pred CCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC---CCCceEEEEcC
Q psy10677 155 TNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE---GDGPIALVLAP 231 (317)
Q Consensus 155 ~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~---~~~~~alil~P 231 (317)
|.+| +.+.+..|++||....+..+. ...+++ +|||||+|||...++-+|+.+....+... ....+.++++|
T Consensus 299 Wnq~-aF~g~~sLNrIQS~v~daAl~-~~EnmL----lCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 299 WNQP-AFFGKQSLNRIQSKVYDAALR-GDENML----LCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred hhhh-hcccchhhhHHHHHHHHHHhc-CcCcEE----EeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4444 334445679999999999883 556899 99999999999999999999976543211 23468999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC--------CCCCCCCchhHHH
Q psy10677 232 TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN--------DAHSPCLSVWRRL 301 (317)
Q Consensus 232 treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~--------~~~~~~lde~d~l 301 (317)
++.||+.+...+.+....+||++.-.+|+.....+...-..++||||..- |.+.++ .++++.+||.+-+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999886655544455999999874 556665 3445666666544
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-11 Score=115.38 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred CcccCCCh-HHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPR-EIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~-------------------- 58 (317)
+||||++. .+..+++.++++|+.+.+.... ....++.|+++.++. .+|.+.|.++++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHH
Confidence 59999985 5999999999999999887766 567789999988874 568888887774
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... +.+
T Consensus 262 ~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi------p~v~~VI~~d~p~s~------~~y 329 (434)
T PRK11192 262 AGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI------DDVSHVINFDMPRSA------DTY 329 (434)
T ss_pred HHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC------CCCCEEEEECCCCCH------HHH
Confidence 9999998 999999999999 999999 899999999998754 688
Q ss_pred HHHHHHHCCceeecCC
Q psy10677 114 IDSFRKEHNITLIGQN 129 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~ 129 (317)
+++.++..+.+..|..
T Consensus 330 iqr~GR~gR~g~~g~a 345 (434)
T PRK11192 330 LHRIGRTGRAGRKGTA 345 (434)
T ss_pred hhcccccccCCCCceE
Confidence 8888888876555543
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-12 Score=108.87 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=95.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc-CCCCccc--eeecC------c
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-GHYPKSV--RFVLG------T 71 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-lhg~~~q--~F~~g------~ 71 (317)
|||||++++++..+++||.||..|.+..+...+.+.++|+|+...+.+|...|.+||+ | +.+| .|-.. +
T Consensus 222 mfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L--eFNQVvIFvKsv~Rl~f~ 299 (387)
T KOG0329|consen 222 MFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL--EFNQVVIFVKSVQRLSFQ 299 (387)
T ss_pred eeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh--hhcceeEeeehhhhhhhh
Confidence 6999999999999999999999999987765678899999999999999888888886 1 1223 22111 2
Q ss_pred ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 72 AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 72 ~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
.+ +|| .||+|| .-+..+.||++|++. +.+.|+..+..+.+..|..+
T Consensus 300 kr-~vat~lfgrgmdi------ervNi~~NYdmp~~~------DtYlHrv~rAgrfGtkglai 349 (387)
T KOG0329|consen 300 KR-LVATDLFGRGMDI------ERVNIVFNYDMPEDS------DTYLHRVARAGRFGTKGLAI 349 (387)
T ss_pred hh-hHHhhhhccccCc------ccceeeeccCCCCCc------hHHHHHhhhhhcccccccee
Confidence 33 677 999999 888889999999876 78999999999998888776
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-11 Score=115.30 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=102.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCC--------Cchhhhhhhcc--------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEY--------EKPAKWWDSNN-------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~--------~K~~~L~~ll~-------------- 58 (317)
.||||+|+-+..+..+||+||..|+...+. ...-.|+|||+.+... .|.+.|.++++
T Consensus 204 a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~ 282 (980)
T KOG4284|consen 204 AFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQI 282 (980)
T ss_pred EEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhh
Confidence 389999999999999999999999998887 5777899998876542 48888888886
Q ss_pred -------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccC
Q psy10677 59 -------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQ 107 (317)
Q Consensus 59 -------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~ 107 (317)
|.|.|+| ++|+-.++|||+ |||+|- ..+..|+|.+.|.+.
T Consensus 283 sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa------~~vNLVVNiD~p~d~--- 353 (980)
T KOG4284|consen 283 SRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDA------DNVNLVVNIDAPADE--- 353 (980)
T ss_pred hhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCc------cccceEEecCCCcch---
Confidence 8999999 788889999999 999998 888999999999877
Q ss_pred CCCHHHHHHHHHHCCceeecCCC
Q psy10677 108 GKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 108 ~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
+.+.|++++.++.+.+|-.+
T Consensus 354 ---eTY~HRIGRAgRFG~~G~aV 373 (980)
T KOG4284|consen 354 ---ETYFHRIGRAGRFGAHGAAV 373 (980)
T ss_pred ---HHHHHHhhhcccccccceeE
Confidence 88999999999887777543
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-11 Score=112.56 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=101.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCC------------------------CCCCCcCcEEEEEEccCCCchhhhhhh
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSA------------------------NLAANPNIKQFVEICHEYEKPAKWWDS 56 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~------------------------~~~~~~~i~q~~~~~~~~~K~~~L~~l 56 (317)
|.|||+.+.|.+|++.-|+||+.|.++.. ..+.++++.|.|.+|+..-+.-+|..+
T Consensus 336 LlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~ 415 (708)
T KOG0348|consen 336 LLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAAL 415 (708)
T ss_pred hhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHH
Confidence 57999999999999999999999983211 024567789999999998888888877
Q ss_pred cc-----------------------------------------------------------CCCCccc--------eeec
Q psy10677 57 NN-----------------------------------------------------------GHYPKSV--------RFVL 69 (317)
Q Consensus 57 l~-----------------------------------------------------------lhg~~~q--------~F~~ 69 (317)
|. |||.|+| .|+.
T Consensus 416 L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~ 495 (708)
T KOG0348|consen 416 LLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH 495 (708)
T ss_pred HHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc
Confidence 75 9999999 8888
Q ss_pred Ccccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 70 GTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 70 g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
..--||+| |||+|+ .++..++.|+.|... .+++|+++++.+++-+|..+
T Consensus 496 ~~~~VLLcTDVAaRGLDl------P~V~~vVQYd~P~s~------adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 496 SRRAVLLCTDVAARGLDL------PHVGLVVQYDPPFST------ADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred ccceEEEehhhhhccCCC------CCcCeEEEeCCCCCH------HHHHHHhhhhhhccCCCceE
Confidence 77779988 999999 899999999999865 89999999999999999765
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-10 Score=112.63 Aligned_cols=119 Identities=19% Similarity=0.119 Sum_probs=93.1
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+...|.+.+..+| |+|++ +++|||+|||+....-+++|+...+ +.++|+++||+-|+.|+...++.+
T Consensus 63 lR~YQ~eivq~AL---gkNti----i~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 63 LRNYQEELVQPAL---GKNTI----IALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred ccHHHHHHhHHhh---cCCeE----EEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhc
Confidence 3888999887777 89999 9999999999999999999997653 479999999999999999777777
Q ss_pred hcCCCcEEEEEECC-CCHH--HHHHHccCcEEECcHHHHHHHhcC------CCCCCCCchhHH
Q psy10677 247 SRTMRIRHACLYGG-TSKM--YQVILLRILTSATNTSLGIYLQQN------DAHSPCLSVWRR 300 (317)
Q Consensus 247 ~~~~~~~~~~~~gg-~~~~--~~~~~~~~ilv~TP~~l~~~l~~~------~~~~~~lde~d~ 300 (317)
+.. -++....|| .+.. .+.-.-+++++.||..|.+.|+.+ .+.+.++|||++
T Consensus 130 ~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 130 LIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHR 190 (746)
T ss_pred cCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccc
Confidence 765 344444455 3332 333344559999999999988886 355677888865
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=117.77 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred hhhhcccCcCCCCCCCcCCCCCCCCchhhhhcc----ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC
Q psy10677 144 SYILGPMKPKTTNNENNHNKNKKCGDKESKNWT----IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219 (317)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip----~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~ 219 (317)
+.+.+.+...||+ + .+.|.+.+. .+. .|++++ +.||||+|||+||++|++.+.. .
T Consensus 233 ~~~~~~~~~~~~~-~---------r~~Q~~~~~~i~~~~~--~~~~~~----~eA~TG~GKT~ayLlp~~~~~~-~---- 291 (850)
T TIGR01407 233 SLFSKNIDRLGLE-Y---------RPEQLKLAELVLDQLT--HSEKSL----IEAPTGTGKTLGYLLPALYYAI-T---- 291 (850)
T ss_pred HHHHHhhhhcCCc-c---------CHHHHHHHHHHHHHhc--cCCcEE----EECCCCCchhHHHHHHHHHHhc-C----
Confidence 3556667677777 6 899998665 555 789999 9999999999999999988765 1
Q ss_pred CCCCceEEEEcCcHHHHHHHHH-HHHHHhcCCC--cEEEEEECCCC
Q psy10677 220 EGDGPIALVLAPTRELAQQIQA-VISIFSRTMR--IRHACLYGGTS 262 (317)
Q Consensus 220 ~~~~~~alil~PtreLa~Qi~~-~~~~l~~~~~--~~~~~~~gg~~ 262 (317)
+-+++|.+||++|+.|+.. .+..+.+.++ ++++.+.|+.+
T Consensus 292 ---~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 292 ---EKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred ---CCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 3489999999999999865 6777766554 89999998864
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-10 Score=111.31 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=74.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.|+||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.+++.. +.+++.++|+.+..+....+.
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l-~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVL-A-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 569999999999976544443 3 25689999999999999999888753 467889999988766544432
Q ss_pred -------CcEEECcHHHHHHHhcCCCCCCCCchhHHH
Q psy10677 272 -------ILTSATNTSLGIYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 272 -------~ilv~TP~~l~~~l~~~~~~~~~lde~d~l 301 (317)
.|+|||+..+. .--.++.+.++||.+..
T Consensus 71 ~~~~g~~~IVVGTrsalf--~p~~~l~lIIVDEeh~~ 105 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF--LPFKNLGLIIVDEEHDS 105 (505)
T ss_pred HHHcCCCCEEECChHHHc--CcccCCCEEEEECCCcc
Confidence 28999999875 34468899999998643
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.1e-10 Score=114.67 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=68.1
Q ss_pred Cchhhhhc---cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH-HHHH
Q psy10677 168 GDKESKNW---TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI-QAVI 243 (317)
Q Consensus 168 t~iQ~~~i---p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi-~~~~ 243 (317)
.+-|.+.. -..++ ++..++ +.|+||||||+||++|++.+. .+.++||++||++|+.|+ .+.+
T Consensus 247 R~~Q~~ma~~V~~~l~-~~~~~~----~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 247 RPKQESFAKLVGEDFH-DGPASF----IEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CHHHHHHHHHHHHHHh-CCCcEE----EECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 88898844 33332 788899 999999999999999988753 246899999999999999 5888
Q ss_pred HHHhcCCCcEEEEEECCCC
Q psy10677 244 SIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~ 262 (317)
..+.+.+++++.++.||.+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ 331 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQN 331 (820)
T ss_pred HHHHHhcCCcEEEEECCcc
Confidence 9999888999999998866
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-10 Score=111.31 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=100.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++.++..+++.++.+|..+.+...+ ....+++|+++.+...+|...|.+++.
T Consensus 275 ~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~ 353 (475)
T PRK01297 275 LFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEE 353 (475)
T ss_pred EEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 589999999999999999999998887766 566788888888888888888877664
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||++++ .|++|+.++||| +||+|+ .++..+++|++|... .++++
T Consensus 354 ~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi------~~v~~VI~~~~P~s~------~~y~Q 421 (475)
T PRK01297 354 RLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI------DGISHVINFTLPEDP------DDYVH 421 (475)
T ss_pred HHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc------cCCCEEEEeCCCCCH------HHHHH
Confidence 8999998 999999999999 999999 899999999998754 68889
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.++.++....|..+
T Consensus 422 r~GRaGR~g~~g~~i 436 (475)
T PRK01297 422 RIGRTGRAGASGVSI 436 (475)
T ss_pred hhCccCCCCCCceEE
Confidence 888888876666543
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=110.08 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=99.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. .|+ + +...||+|||++..+|++..... |..+.|++||.-||.|-++.+..+.
T Consensus 84 ydVQliGg~~Lh--~G~--i----aEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 84 FDVQLIGGMTLH--EGK--I----AEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred chhHHHhhhHhc--cCc--c----ccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 899987765555 555 6 67899999999999999876653 6789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHh----c-------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQ----Q-------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~----~-------~~~~~~~lde~d~l~ 302 (317)
+.+|+++.+++++.+..+....... |++||..-+ .|+|. . ..+.+..+||+|.+|
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999999999999988877776655 999999987 23333 3 477889999999875
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=107.43 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=98.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
...|.-....++ .|++.- +.||||.|||.--++-.+ .+.. .|-+++|++||.-|+.|+++.++++.
T Consensus 84 ws~QR~WakR~~--rg~SFa----iiAPTGvGKTTfg~~~sl-~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 84 WSAQRVWAKRLV--RGKSFA----IIAPTGVGKTTFGLLMSL-YLAK-------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hHHHHHHHHHHH--cCCceE----EEcCCCCchhHHHHHHHH-HHHh-------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 999999999999 999999 999999999964444333 3332 25799999999999999999999999
Q ss_pred cCCC-cEEEEEE-CCCCHHHHHH---HccC----cEEECcHHHHHH---HhcCCCCCCCCch----------hHHHhhhc
Q psy10677 248 RTMR-IRHACLY-GGTSKMYQVI---LLRI----LTSATNTSLGIY---LQQNDAHSPCLSV----------WRRLQDIL 305 (317)
Q Consensus 248 ~~~~-~~~~~~~-gg~~~~~~~~---~~~~----ilv~TP~~l~~~---l~~~~~~~~~lde----------~d~l~~~~ 305 (317)
...+ .++.++| |-.+..+..+ .+.+ |+|+|.+-|... |.+.+.+|..+|. .|+++..+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 7655 5544434 4445444333 3333 899999888644 4445778877773 57899999
Q ss_pred CCcHHHH
Q psy10677 306 GLTEETC 312 (317)
Q Consensus 306 gf~~~~~ 312 (317)
||.++..
T Consensus 230 Gf~eE~i 236 (1187)
T COG1110 230 GFSEEVI 236 (1187)
T ss_pred CCCHHHH
Confidence 9999865
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=107.13 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=62.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh-cC--CCcEEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS-RT--MRIRHACLY 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~-~~--~~~~~~~~~ 258 (317)
.++.++ +.|+||||||+||++|++..+... .+.++||++||++|+.|+.+.+..+. +. .+++++++.
T Consensus 15 ~~~~ll----iEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lk 84 (636)
T TIGR03117 15 QKRIGM----LEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFP 84 (636)
T ss_pred cCCeEE----EEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 778888 999999999999999999887632 25799999999999999999999988 43 368889999
Q ss_pred CCCCH
Q psy10677 259 GGTSK 263 (317)
Q Consensus 259 gg~~~ 263 (317)
|+.+.
T Consensus 85 Gr~nY 89 (636)
T TIGR03117 85 GSQEF 89 (636)
T ss_pred CCccc
Confidence 88663
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-09 Score=107.51 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=101.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +.-.||+|||++..+|++..... |-++-|++||..||.|-++.+..+.
T Consensus 82 ~dvQlig~l~l~--~G~--i----aEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 82 FDVQIIGGIVLH--EGN--I----AEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred chhHHHHHHHHh--cCC--c----ccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 899988776666 777 6 78999999999999999887764 6789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~ 302 (317)
+.+|+++++++|+.+..+....... |+-||+..+. |+|..+ .+++..+||+|.+|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999999988877777665 9999999885 455442 57788899999865
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-09 Score=104.34 Aligned_cols=120 Identities=10% Similarity=0.016 Sum_probs=102.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.-.++ .|+ + +.-.||+|||++..+|++..... |-.+.|++||..||.|-++.+..+.
T Consensus 80 ydvQlig~l~Ll--~G~--V----aEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 80 FDVQLLGALRLL--AGD--V----IEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred chHHHHHHHHHh--CCC--c----ccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 999999998888 774 5 67899999999999999877654 6789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~~ 303 (317)
+.+|+++.++.++.+..+....... |+-||...+. |+|.. ..+++..+||+|.+|-
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9999999999999998877777655 9999999874 34333 3577899999998764
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-09 Score=99.61 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=96.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|..+-++++..+.+|+.|.+.-++ ...++++..++.+...+|..+|..+++
T Consensus 200 lfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~ 278 (529)
T KOG0337|consen 200 LFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVR 278 (529)
T ss_pred EEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHH
Confidence 699999999999999999999999988777 688899999999999999999999886
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+.|.|.| +|+.++..+||. |||+|| .-..+++||+.|..+.+ -+
T Consensus 279 ~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~di------plldnvinyd~p~~~kl------Fv 346 (529)
T KOG0337|consen 279 GLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDI------PLLDNVINYDFPPDDKL------FV 346 (529)
T ss_pred HHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCC------ccccccccccCCCCCce------EE
Confidence 6777777 899999999977 999999 77889999998765522 24
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
|+..+..++...|.
T Consensus 347 hRVgr~aragrtg~ 360 (529)
T KOG0337|consen 347 HRVGRVARAGRTGR 360 (529)
T ss_pred EEecchhhccccce
Confidence 55555554444443
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5e-09 Score=110.96 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=71.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--C----cHHHHHHHHHHHHH-HhcCCCcEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--P----TRELAQQIQAVISI-FSRTMRIRH 254 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--P----treLa~Qi~~~~~~-l~~~~~~~~ 254 (317)
++..++ ++|+||||||. .+|.+..-.. .+..+.|+| | +++||.||.+++.. ++...|.++
T Consensus 88 ~~~Vvi----I~GeTGSGKTT--qlPq~lle~g-------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v 154 (1294)
T PRK11131 88 DHQVVI----VAGETGSGKTT--QLPKICLELG-------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV 154 (1294)
T ss_pred hCCeEE----EECCCCCCHHH--HHHHHHHHcC-------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee
Confidence 555667 88999999999 5885433211 122223332 4 78999999998875 444444332
Q ss_pred EEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhH-HHhhhcCCcHH
Q psy10677 255 ACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWR-RLQDILGLTEE 310 (317)
Q Consensus 255 ~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d-~l~~~~gf~~~ 310 (317)
....+...-..|+++|||+|++.+.. ..++..+||||| ++++ ++|...
T Consensus 155 -------rf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn-~DfLLg 207 (1294)
T PRK11131 155 -------RFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLN-IDFILG 207 (1294)
T ss_pred -------cCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccc-cchHHH
Confidence 11222222234999999999999886 367788999999 6888 777653
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-09 Score=87.70 Aligned_cols=123 Identities=12% Similarity=0.006 Sum_probs=81.6
Q ss_pred CCCchhhhhcccccc---c--cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN---F--QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~---~--~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
++++.|.+|+-.+.+ . ..+.++ +.+|||||||.+++-.+.. +.. .+++++|+..|+.|..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~l----l~~~tGsGKT~~~~~~~~~-l~~----------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVL----LNAPTGSGKTIIALALILE-LAR----------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEE----EEESTTSSHHHHHHHHHHH-HHC----------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEE----EEECCCCCcChhhhhhhhc-ccc----------ceeEecCHHHHHHHHH
Confidence 458999999988883 0 257888 9999999999998864443 331 8999999999999999
Q ss_pred HHHHHHhcCCCcEEEE-----------EECCCCHHH-HHHHcc--CcEEECcHHHHHHHhc----------------CCC
Q psy10677 241 AVISIFSRTMRIRHAC-----------LYGGTSKMY-QVILLR--ILTSATNTSLGIYLQQ----------------NDA 290 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~-----------~~gg~~~~~-~~~~~~--~ilv~TP~~l~~~l~~----------------~~~ 290 (317)
+.+..+.......... ......... ...... .++++|...+...... ...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997776542111000 001111111 111111 1799999999877654 245
Q ss_pred CCCCCchhHHHhh
Q psy10677 291 HSPCLSVWRRLQD 303 (317)
Q Consensus 291 ~~~~lde~d~l~~ 303 (317)
++.++||++..-.
T Consensus 148 ~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 148 DLVIIDEAHHYPS 160 (184)
T ss_dssp SEEEEETGGCTHH
T ss_pred CEEEEehhhhcCC
Confidence 6888999987665
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.2e-09 Score=99.53 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=88.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
+||||+|.++.++...++.+|..+.+.... ....++++++..++. ..+...+..++.
T Consensus 206 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 206 LFSATMPNEILELTTKFMRDPKRILVKKDE-LTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred EEEecCCHHHHHHHHHHcCCCEEEEeCCCC-cccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHH
Confidence 589999999999999999999888776655 355677777776654 224444444332
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ .|++|+.+|||| +||+|+ .++..+++|+.|... .+++
T Consensus 285 ~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDi------p~v~~VI~~~~p~s~------~~y~ 352 (401)
T PTZ00424 285 KKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDV------QQVSLVINYDLPASP------ENYI 352 (401)
T ss_pred HHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCc------ccCCEEEEECCCCCH------HHEe
Confidence 9999997 899999999999 999999 899999999988643 5667
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
++.++..+.+-.|.
T Consensus 353 qr~GRagR~g~~G~ 366 (401)
T PTZ00424 353 HRIGRSGRFGRKGV 366 (401)
T ss_pred ecccccccCCCCce
Confidence 77776666544443
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-09 Score=99.21 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=96.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcC---CCCCCCcCcEEEEEEccCCCchhhhhhhcc-------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGS---ANLAANPNIKQFVEICHEYEKPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~---~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~------------------- 58 (317)
+||||++..-.++...-++.|....+.. .-.+.++.++|+++.++..-|.-++..+++
T Consensus 365 ~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 365 VFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred hcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 5899999999999999999995444331 122567788999998888777777776664
Q ss_pred ------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCC
Q psy10677 59 ------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQG 108 (317)
Q Consensus 59 ------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~ 108 (317)
+.|.+++ .|..|.+++||| |||+|+ -++.+|+||++|...
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv------~~v~~VINYd~P~~~---- 514 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDV------NDVDNVINYDPPASD---- 514 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcc------cccceEeecCCCchh----
Confidence 4455555 999999999999 999999 899999999999765
Q ss_pred CCHHHHHHHHHHCCceeecCCC
Q psy10677 109 KTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 109 ~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
..++|+.+++.+++-.|..+
T Consensus 515 --ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 515 --KTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred --hHHHHhhcccccccCCceEE
Confidence 79999999999998888765
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-08 Score=100.53 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=97.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.=.+. .| -+ +...||.|||+++.+|+.-..+ .|-.+.|++++..||.+-++++..+-
T Consensus 78 ydvQlig~l~L~--~G--~I----aEm~TGEGKTL~a~l~ayl~aL--------~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 78 FDVQLIGGLVLN--DG--KI----AEMKTGEGKTLVATLPAYLNAL--------TGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CchHhhhhHhhc--CC--cc----ccccCCCCchHHHHHHHHHHHh--------cCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 889987764444 44 46 7899999999999999965443 25679999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
+.+|+++.++.++.+..+....... |+-||+..+. |+|.. ..+++..+||+|.+|
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999999999999887777766 9999998664 44433 367789999999875
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-08 Score=92.99 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=86.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
|+.|.+|+.++.. ...||. ++.|||+||+|||.||.|.+ +...+|+.|.-+|...+-+.+..+
T Consensus 22 s~LQE~A~~c~VK-~k~DVy----VsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkDQiDHL~~L- 84 (641)
T KOG0352|consen 22 SRLQEQAINCIVK-RKCDVY----VSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKDQIDHLKRL- 84 (641)
T ss_pred ChHHHHHHHHHHh-ccCcEE----EeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHHHHHHHHhc-
Confidence 8899999999883 456999 99999999999999999853 238899999877775555544443
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC---------cEEECcHH---------HHHHHhcCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI---------LTSATNTS---------LGIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~---------ilv~TP~~---------l~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.+.+..+.+..+..+....+.+ ++--||.. |..+.+++.+.+.++|||+.+-.
T Consensus 85 ---KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 85 ---KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred ---CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 5566666666776665544433 68889973 22344557899999999988765
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-08 Score=106.59 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=84.6
Q ss_pred CCCchhhhhcccccc---ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN---FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~---~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.+.+.|.+|+..+.. ...+..+ ++.+||||||.+. +.++.++.+. ....++|+|+|+++|+.|..+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~L----l~maTGSGKT~ta-i~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREIL----LAMATGTGKTRTA-IALMYRLLKA-----KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeE----EEeCCCCCHHHHH-HHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHH
Confidence 459999999987752 1236788 9999999999883 4556666553 2346999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHH-ccCcEEECcHHHHHHHhc----------CCCCCCCCchhHHH
Q psy10677 243 ISIFSRTMRIRHACLYGGTSKMYQVIL-LRILTSATNTSLGIYLQQ----------NDAHSPCLSVWRRL 301 (317)
Q Consensus 243 ~~~l~~~~~~~~~~~~gg~~~~~~~~~-~~~ilv~TP~~l~~~l~~----------~~~~~~~lde~d~l 301 (317)
++.+.-..+.....+++.......... -..|+|+|...+...+.. +..++.++|||++-
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 988743322222223322211111111 134899999998765421 34668889999985
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-08 Score=98.37 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=84.1
Q ss_pred CCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+.|.|.+|+...+. .| +.-+ ++.|||+|||+..+..+ .++ +-.+|||||+.+|+.|..+++.
T Consensus 256 LRpYQ~eAl~~~~~-~gr~r~GI----IvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 256 IRPYQEKSLSKMFG-NGRARSGI----IVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred cCHHHHHHHHHHHh-cCCCCCcE----EEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHH
Confidence 38999999988773 33 4677 89999999999876544 333 1359999999999999999999
Q ss_pred HHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHH-------------HHHhcCCCCCCCCchhHHH
Q psy10677 245 IFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLG-------------IYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 245 ~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~-------------~~l~~~~~~~~~lde~d~l 301 (317)
++.......+..++|+..... .....|+|+|...+. +.+......+.++||++.+
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~~--~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~l 387 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKERF--HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVV 387 (732)
T ss_pred HhcCCCCceEEEEecCccccc--ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccc
Confidence 987544556666666543211 112348999997653 3344456778999998765
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=9e-08 Score=98.90 Aligned_cols=134 Identities=15% Similarity=0.065 Sum_probs=102.3
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.+..+|.+---+..++|+|.++++.+.+ +..+|+ +.||+|||||.|.-+.++. .....+|++++|.
T Consensus 1130 ~~l~N~~~~~lf~~~n~iqtqVf~~~y~-~nd~v~----vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~ 1195 (1674)
T KOG0951|consen 1130 SALRNPSFETLFQDFNPIQTQVFTSLYN-TNDNVL----VGAPNGSGKTACAELALLR---------PDTIGRAVYIAPL 1195 (1674)
T ss_pred hccCCcchhhhccccCCceEEEEeeeec-ccceEE----EecCCCCchhHHHHHHhcC---------CccceEEEEecch
Confidence 3444554433344449999999999996 778899 9999999999999998875 1346799999999
Q ss_pred HHHHHHHHHHHH-HHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 233 RELAQQIQAVIS-IFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 233 reLa~Qi~~~~~-~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
.+.+...+..+. +|.+..|.+++.++|..+.+.......+++|+||.+.-.+=.-..+++...||+..
T Consensus 1196 ~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1196 EEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHL 1264 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHHhhhhhcceEeeehhhh
Confidence 999988877665 56667799999999999988777777779999999865442223455555555543
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=86.63 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=58.5
Q ss_pred CCchhhhh----ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKN----WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~----ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++|.|.+. ...+. .|.+++ +.||||+|||++|++|++..+...+.. ..+.+.++.++|..+..|....
T Consensus 9 ~r~~Q~~~m~~v~~~~~--~~~~~~----~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 9 PYPIQYEFMEELKRVLD--RGKIGI----LESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCHHHHHHHHHHHHHHH--cCCcEE----EECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHH
Confidence 39999994 44455 788999 999999999999999999887654211 1245899999999999998888
Q ss_pred HHHHh
Q psy10677 243 ISIFS 247 (317)
Q Consensus 243 ~~~l~ 247 (317)
++++.
T Consensus 81 l~~~~ 85 (289)
T smart00488 81 LRKLM 85 (289)
T ss_pred HHhcc
Confidence 87764
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=86.63 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=58.5
Q ss_pred CCchhhhh----ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKN----WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~----ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++|.|.+. ...+. .|.+++ +.||||+|||++|++|++..+...+.. ..+.+.++.++|..+..|....
T Consensus 9 ~r~~Q~~~m~~v~~~~~--~~~~~~----~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 9 PYPIQYEFMEELKRVLD--RGKIGI----LESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCHHHHHHHHHHHHHHH--cCCcEE----EECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHH
Confidence 39999994 44455 788999 999999999999999999887654211 1245899999999999998888
Q ss_pred HHHHh
Q psy10677 243 ISIFS 247 (317)
Q Consensus 243 ~~~l~ 247 (317)
++++.
T Consensus 81 l~~~~ 85 (289)
T smart00489 81 LRKLM 85 (289)
T ss_pred HHhcc
Confidence 87764
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=95.62 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=98.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +...||.|||++..+|+.-..+. |-.+.|++++..||.+=.+++..+.
T Consensus 87 ydVQliGgl~Lh--~G~--I----AEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 87 FDVQLIGGMVLH--EGQ--I----AEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred chhHHHhhhhhc--CCc--e----eeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 889987765666 665 6 78999999999999999876553 5679999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-----HHHHhc-------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-----GIYLQQ-------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-----~~~l~~-------~~~~~~~lde~d~l~ 302 (317)
+.+|+++.++.++.+..+....... |+.||++.+ -|.|.. ..+++..+||+|.+|
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999999999988877777655 999999998 333332 367788899999865
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=82.40 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=96.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+.|..++=.+. .|+ + +.-.||-|||++..+|..-..+. |-.+-|++.+..||..=++.+..+.
T Consensus 79 ~~vQll~~l~L~--~G~--l----aEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 79 YDVQLLGALALH--KGR--L----AEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp -HHHHHHHHHHH--TTS--E----EEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cHHHHhhhhhcc--cce--e----EEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 999999986666 776 6 78999999999998888776653 5678999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~ 302 (317)
+.+|+++.+++++.+..+....... |+-||++.+. |+|..+ ..++..+||+|.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999987765555544 9999999986 455542 56678899999887
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-08 Score=93.44 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=81.3
Q ss_pred CCchhhhhcccccccc----CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQ----AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~----g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
+.+.|.+|+..+. . ++..+ ++.|||+|||..++-.+-. + +..+||||||++|+.|-++.
T Consensus 37 lr~yQ~~al~a~~--~~~~~~~~gv----ivlpTGaGKT~va~~~~~~-~----------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 37 LRPYQEEALDALV--KNRRTERRGV----IVLPTGAGKTVVAAEAIAE-L----------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CcHHHHHHHHHHH--hhcccCCceE----EEeCCCCCHHHHHHHHHHH-h----------cCCEEEEECcHHHHHHHHHH
Confidence 4999999999998 6 88899 9999999999988665532 1 22399999999999999866
Q ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH-----HhcCCCCCCCCchhHHHhh
Q psy10677 243 ISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY-----LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 243 ~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~-----l~~~~~~~~~lde~d~l~~ 303 (317)
+....... -.+.. +||..+.... ..|.|+|=..+... +..+...+.++||++.+-.
T Consensus 100 ~~~~~~~~-~~~g~-~~~~~~~~~~---~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a 160 (442)
T COG1061 100 LKKFLLLN-DEIGI-YGGGEKELEP---AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA 160 (442)
T ss_pred HHHhcCCc-cccce-ecCceeccCC---CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc
Confidence 66655432 12233 4443332211 45888888777652 2234688999999876654
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.8e-08 Score=88.41 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=95.8
Q ss_pred cCCCCChhhhcccCcC-CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC
Q psy10677 138 DETNIPSYILGPMKPK-TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP 216 (317)
Q Consensus 138 ~~~~l~~~l~~~l~~~-g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~ 216 (317)
++++.+.+..+.|++. .+++. .|.|..+|...+ .|+|++ ++-|||.||++||.||.|-
T Consensus 74 d~fpws~e~~~ilk~~f~lekf---------rplq~~ain~~m--a~ed~~----lil~tgggkslcyqlpal~------ 132 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKF---------RPLQLAAINATM--AGEDAF----LILPTGGGKSLCYQLPALC------ 132 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhc---------ChhHHHHhhhhh--ccCceE----EEEeCCCccchhhhhhHHh------
Confidence 5566777777777764 34444 999999999999 999999 9999999999999999973
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH---HccC------cEEECcHHHHH---H
Q psy10677 217 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI---LLRI------LTSATNTSLGI---Y 284 (317)
Q Consensus 217 ~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~~~~------ilv~TP~~l~~---~ 284 (317)
....+||+||.-.|.....-+++.+ |+...++...+++.+... .+.+ .+-.||..+.. +
T Consensus 133 -----adg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 133 -----ADGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred -----cCCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 2458999999888887666665554 677777766666554321 1111 68899998752 2
Q ss_pred -------HhcCCCCCCCCchhH
Q psy10677 285 -------LQQNDAHSPCLSVWR 299 (317)
Q Consensus 285 -------l~~~~~~~~~lde~d 299 (317)
+.-+.+.+..+||..
T Consensus 204 mnkleka~~~~~~~~iaidevh 225 (695)
T KOG0353|consen 204 MNKLEKALEAGFFKLIAIDEVH 225 (695)
T ss_pred HHHHHHHhhcceeEEEeeccee
Confidence 233556666677654
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-08 Score=101.73 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=92.4
Q ss_pred CCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
..+.+-|.+||-..+ .|+|++ +..|||.||.+||.||++- .++..|||.|...|. .+++.
T Consensus 263 ~~FR~~Q~eaI~~~l--~Gkd~f----vlmpTG~GKSLCYQlPA~l-----------~~gitvVISPL~SLm---~DQv~ 322 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL--SGKDCF----VLMPTGGGKSLCYQLPALL-----------LGGVTVVISPLISLM---QDQVT 322 (941)
T ss_pred ccCChhHHHHHHHHH--cCCceE----EEeecCCceeeEeeccccc-----------cCCceEEeccHHHHH---HHHHH
Confidence 345999999999999 999999 9999999999999999873 244899999977777 55566
Q ss_pred HHhcCCCcEEEEEECCCCHHHHHHHccC---------cEEECcHHHHH----------HHhcCCCCCCCCchhHHHhh
Q psy10677 245 IFSRTMRIRHACLYGGTSKMYQVILLRI---------LTSATNTSLGI----------YLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 245 ~l~~~~~~~~~~~~gg~~~~~~~~~~~~---------ilv~TP~~l~~----------~l~~~~~~~~~lde~d~l~~ 303 (317)
++.+ .+|+..++.++....++...+.. |+--||..+.. +-..+.+.+.++|||..+-.
T Consensus 323 ~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq 399 (941)
T KOG0351|consen 323 HLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ 399 (941)
T ss_pred hhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh
Confidence 6643 48999999999988755443322 68889987752 12224588999999998766
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=97.24 Aligned_cols=121 Identities=17% Similarity=0.022 Sum_probs=102.4
Q ss_pred CCchhhhhcccccc----ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLN----FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~----~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
-|+=|..||..+.. ..-.|=+ +||..|=|||-..+=++.-.++ +|.++.|||||--||+|.++.
T Consensus 595 ET~DQl~AI~eVk~DM~~~kpMDRL----iCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMESGKPMDRL----ICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred CCHHHHHHHHHHHHHhccCCcchhe----eecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEcccHHhHHHHHHH
Confidence 39999999988874 2235888 9999999999988777765554 478999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCchhH
Q psy10677 243 ISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSVWR 299 (317)
Q Consensus 243 ~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde~d 299 (317)
++.-.+++++++..+..=.+..++...++. |||||..-|..-++.+++.++++||=.
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechh
Confidence 999999999999999887888887776655 799999777777788899999999743
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-07 Score=93.46 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|+|..+..... .+.-++ +.||||||||.|.+..+. ++... +...++++..||++++.|+++.++++.
T Consensus 288 ~p~Q~~~~~~~~--~pgl~i----leApTGsGKTEAAL~~A~-~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 288 RQLQTLVDALPL--QPGLTI----IEAPTGSGKTEAALAYAW-RLIDQ-----GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred hHHHHHHHhhcc--CCCeEE----EEeCCCCCHHHHHHHHHH-HHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 999998754434 556678 999999999999877655 44332 234689999999999999999998765
Q ss_pred cCC--CcEEEEEECCCC
Q psy10677 248 RTM--RIRHACLYGGTS 262 (317)
Q Consensus 248 ~~~--~~~~~~~~gg~~ 262 (317)
+.. ...+.+++|+..
T Consensus 356 ~~~f~~~~v~L~Hg~a~ 372 (878)
T PRK09694 356 SKLFPSPNLILAHGNSR 372 (878)
T ss_pred HHhcCCCceEeecCcch
Confidence 432 345677776653
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-07 Score=97.56 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=78.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhh----cc------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDS----NN------------------ 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~l----l~------------------ 58 (317)
|||||+|.++.++++.++++|..+.+.... ....++.|+ +.++.+.|...+... +.
T Consensus 210 LFSAT~p~ei~~l~~~~~~~p~~i~V~~~~-l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~ 287 (844)
T TIGR02621 210 ELTATSRTDGPDRTTLLSAEDYKHPVLKKR-LAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRK 287 (844)
T ss_pred EEecCCCccHHHHHHHHccCCceeeccccc-ccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHH
Confidence 699999999999999999999888776655 456677775 344544454333222 11
Q ss_pred ------------CCCCccc-------------eeec----Cc-------ccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 59 ------------GHYPKSV-------------RFVL----GT-------AGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 59 ------------lhg~~~q-------------~F~~----g~-------~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
|||+|+| +|++ |+ .+|||| +||+|| . ...++++
T Consensus 288 L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDI------d-~d~VI~d 360 (844)
T TIGR02621 288 VFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNI------S-ADHLVCD 360 (844)
T ss_pred HHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccC------C-cceEEEC
Confidence 9999998 3766 44 689999 999999 3 3566665
Q ss_pred CCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 99 PDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 99 ~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
..|. +.+++++++.++..-.|
T Consensus 361 ~aP~--------esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 361 LAPF--------ESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CCCH--------HHHHHHhcccCCCCCCC
Confidence 4442 68999999998875543
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-07 Score=97.43 Aligned_cols=58 Identities=5% Similarity=-0.165 Sum_probs=51.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+++| +|++|+.++||| +||+|| .+++.+++|+.|... .+++++.+|.++.+..
T Consensus 309 ~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI------~~vd~VI~~~~P~s~------~~y~qRiGRaGR~G~~ 376 (742)
T TIGR03817 309 YRAGYLPEDRRELERALRDGELLGVATTNALELGVDI------SGLDAVVIAGFPGTR------ASLWQQAGRAGRRGQG 376 (742)
T ss_pred eecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCc------ccccEEEEeCCCCCH------HHHHHhccccCCCCCC
Confidence 7999998 899999999999 999999 899999999999754 7899999988876555
Q ss_pred cC
Q psy10677 127 GQ 128 (317)
Q Consensus 127 g~ 128 (317)
|.
T Consensus 377 g~ 378 (742)
T TIGR03817 377 AL 378 (742)
T ss_pred cE
Confidence 54
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-08 Score=102.00 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=79.5
Q ss_pred CcccCCChH-HHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPRE-IQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
+||||+++. ++. .+++++..+.++... ....+|.|.|+.++ +|...|..+++
T Consensus 273 lfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~ 346 (1176)
T PRK09401 273 VSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEE 346 (1176)
T ss_pred EEeCCCCccchHH---HHhhccceEEecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHH
Confidence 699999875 443 345677778888776 56788999988776 56666666653
Q ss_pred --------------CCCCccc---eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV---RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q---~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|.. +|++|+++|||| |||+|+ .+ +..+++|++|.-..-....+.
T Consensus 347 l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~VLVatas~tdv~aRGIDi------P~~IryVI~y~vP~~~~~~~~~~~ 420 (1176)
T PRK09401 347 LAEYLEDLGINAELAISGFERKFEKFEEGEVDVLVGVASYYGVLVRGIDL------PERIRYAIFYGVPKFKFSLEEELA 420 (1176)
T ss_pred HHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCEEEEecCCCCceeecCCC------CcceeEEEEeCCCCEEEecccccc
Confidence 9999854 999999999999 899999 77 678899999974322222344
Q ss_pred HHHHHHHHC
Q psy10677 113 EIDSFRKEH 121 (317)
Q Consensus 113 ~i~~~~~~~ 121 (317)
..+++.+..
T Consensus 421 ~~~~~~r~~ 429 (1176)
T PRK09401 421 PPFLLLRLL 429 (1176)
T ss_pred CHHHHHHHH
Confidence 555555554
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=94.46 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=76.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC----------CCc---hhhhhhh-----------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE----------YEK---PAKWWDS----------- 56 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~----------~~K---~~~L~~l----------- 56 (317)
+||||+|++++.+ ..|+++|..|.+.. .+...|+|+|+.... .+| ...+...
T Consensus 326 LmSATl~~dv~~l-~~~~~~p~~I~I~g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVF 401 (675)
T PHA02653 326 LMTATLEDDRDRI-KEFFPNPAFVHIPG---GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVF 401 (675)
T ss_pred EEccCCcHhHHHH-HHHhcCCcEEEeCC---CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 6999999999988 57899999888852 234567777753321 111 1111111
Q ss_pred -------------c----------cCCCCccc------ee-ecCcccceec----ccccCCcCCCCCCcccccCCCC---
Q psy10677 57 -------------N----------NGHYPKSV------RF-VLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP--- 99 (317)
Q Consensus 57 -------------l----------~lhg~~~q------~F-~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~--- 99 (317)
| -|||+|+| +| ++|+.+|||| +||+|| .++..|++++
T Consensus 402 lpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDI------p~V~~VID~G~~k 475 (675)
T PHA02653 402 VASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTI------RNATHVYDTGRVY 475 (675)
T ss_pred ECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccc------cCeeEEEECCCcc
Confidence 0 09999998 55 7899999999 999999 8999999887
Q ss_pred CCCccc--cCCCC-HHHHHHHHHHCCceeecC
Q psy10677 100 DPSVNH--LQGKT-KEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 100 ~p~~~~--i~~~~-~~~i~~~~~~~~i~~~g~ 128 (317)
.|.+.. ..-.+ .+.+++-+|.++. ..|.
T Consensus 476 ~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~ 506 (675)
T PHA02653 476 VPEPFGGKEMFISKSMRTQRKGRVGRV-SPGT 506 (675)
T ss_pred CCCcccCcccccCHHHHHHhccCcCCC-CCCe
Confidence 443110 00112 4566776666665 3443
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.1e-07 Score=95.15 Aligned_cols=117 Identities=11% Similarity=-0.008 Sum_probs=89.2
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+-++|++|+-++- .|..|+ ++||||||||.....++-..+.. +-++++.+|.++|..|.++.+...
T Consensus 120 LD~fQ~~a~~~Le--r~esVl----V~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 120 LDPFQQEAIAILE--RGESVL----VCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred cCHHHHHHHHHHh--CCCcEE----EEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHH
Confidence 3899999999999 999999 99999999999987777666553 345999999999999999988865
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRL 301 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l 301 (317)
-...-=.+.+++|+.+..... .++|-|-.-|-+++-++ .+..++.||.+=|
T Consensus 186 fgdv~~~vGL~TGDv~IN~~A----~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi 241 (1041)
T COG4581 186 FGDVADMVGLMTGDVSINPDA----PCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYI 241 (1041)
T ss_pred hhhhhhhccceecceeeCCCC----ceEEeeHHHHHHHhccCcccccccceEEEEeeeec
Confidence 543211236677777664322 26777878888888887 4556667765433
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=91.92 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=62.4
Q ss_pred CCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH--
Q psy10677 167 CGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV-- 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~-- 242 (317)
..+-|.+.+..+.. .++..++ +.||||+|||+||++|++..... .+-+++|-++|+.|..|+...
T Consensus 258 ~R~~Q~~m~~~v~~~l~~~~~~~----iEA~TGtGKTlaYLlpa~~~a~~-------~~~~vvIsT~T~~LQ~Ql~~kDi 326 (928)
T PRK08074 258 KREGQQEMMKEVYTALRDSEHAL----IEAGTGTGKSLAYLLPAAYFAKK-------KEEPVVISTYTIQLQQQLLEKDI 326 (928)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEE----EECCCCCchhHHHHHHHHHHhhc-------cCCeEEEEcCCHHHHHHHHHhhH
Confidence 37888875443321 2778888 99999999999999999876653 356899999999999998763
Q ss_pred --HHHHhcCCCcEEEEEECCCC
Q psy10677 243 --ISIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 243 --~~~l~~~~~~~~~~~~gg~~ 262 (317)
++++.. .+++++++.|..+
T Consensus 327 P~L~~~~~-~~~~~~~lKGr~n 347 (928)
T PRK08074 327 PLLQKIFP-FPVEAALLKGRSH 347 (928)
T ss_pred HHHHHHcC-CCceEEEEEcccc
Confidence 344332 3678888877644
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-07 Score=97.59 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred CcccC-CChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSAT-WPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT-~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
+|||| +|..++. .+++++..+.++... ....+|.|.|..++. +...|.++++
T Consensus 271 ~~SAT~~p~~~~~---~l~r~ll~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 271 VSSATGRPRGKRA---KLFRELLGFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred EEeCCCCccccHH---HHcccccceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHH
Confidence 48999 7876553 456777778888776 577889999876654 2344544443
Q ss_pred --------------CCCCccc----eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCCcc
Q psy10677 59 --------------GHYPKSV----RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPSVN 104 (317)
Q Consensus 59 --------------lhg~~~q----~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~~~ 104 (317)
+||+|++ +|++|+++|||| |||+|+ .+ +..+++|++|...
T Consensus 345 l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGIDi------p~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGLDL------PERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccCCC------CccccEEEEECCCCEE
Confidence 9999976 999999999998 899999 67 6889999988654
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-07 Score=92.10 Aligned_cols=120 Identities=5% Similarity=-0.156 Sum_probs=89.6
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc-----------------------
Q psy10677 2 WSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN----------------------- 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~----------------------- 58 (317)
||||.+.+.+++.+.|.-+++.|-..... .....+.+++++..+|..+|.+++.
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 79999999999999999998776554332 2235566777888889888888773
Q ss_pred ------------CCCCccc------eeecCcccceec----ccccCCcCCC-CCC-cccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV------RFVLGTAGFLLS----AVSFSLPFRD-DKT-SVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q------~F~~g~~~iLva----arg~~~~lr~-~~~-d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
|||++++ .|+.+...|+|| +||+||++.. +.. ...+|++|+.|... ..++
T Consensus 491 ~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~------r~y~ 564 (656)
T PRK12898 491 ALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA------RIDR 564 (656)
T ss_pred HHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH------HHHH
Confidence 9999877 566566689999 9999994322 111 22379999999765 6788
Q ss_pred HHHHHHCCceeecCCC
Q psy10677 115 DSFRKEHNITLIGQNI 130 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~ 130 (317)
|+.+++.+.+-.|..+
T Consensus 565 hr~GRTGRqG~~G~s~ 580 (656)
T PRK12898 565 QLAGRCGRQGDPGSYE 580 (656)
T ss_pred HhcccccCCCCCeEEE
Confidence 9998888887777654
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-06 Score=93.80 Aligned_cols=127 Identities=15% Similarity=0.024 Sum_probs=75.6
Q ss_pred Cchhh--hhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKES--KNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~--~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
-||.. ..|...+. +...++ ++|+||||||. .+|.+..-... +.....++.-|-|--|..+...+.+
T Consensus 66 LPi~~~~~~Il~~l~-~~~vvi----i~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 66 LPVSAKREDIAEAIA-ENQVVI----IAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred CCHHHHHHHHHHHHH-hCceEE----EeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHH
Confidence 66655 33444441 555667 89999999998 56765432111 1112334445666666555544433
Q ss_pred HhcCCCcEEEEEECC-CCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhH-HHhhhcCCcHH
Q psy10677 246 FSRTMRIRHACLYGG-TSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWR-RLQDILGLTEE 310 (317)
Q Consensus 246 l~~~~~~~~~~~~gg-~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d-~l~~~~gf~~~ 310 (317)
- ++..+...+|. ...+.+...-..|.++|||+|++.+.. ..++..++||+| ++++ .+|.-.
T Consensus 134 e---lg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~-~D~LL~ 200 (1283)
T TIGR01967 134 E---LGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN-IDFLLG 200 (1283)
T ss_pred H---hCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhcc-chhHHH
Confidence 2 23344444442 222223333334999999999998876 367889999999 5888 666544
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.8e-06 Score=85.55 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred Cchhhhhccccccc--c------CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 168 GDKESKNWTIPLNF--Q------AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 168 t~iQ~~~ip~~l~~--~------g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
...|..|+..+... . .+..+ +..+||||||++.+.-+...+ +. ...+++|||+|+++|..|.
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gl----i~~~TGsGKT~t~~~la~~l~-~~-----~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGL----IWHTQGSGKTLTMLFAARKAL-EL-----LKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeE----EEEecCCCccHHHHHHHHHHH-hh-----cCCCeEEEEECcHHHHHHH
Confidence 66788888776430 1 24677 899999999987655443322 21 2468999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHc----cCcEEECcHHHHHHHhcC----CC----CCCCCchhHHHhh
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVILL----RILTSATNTSLGIYLQQN----DA----HSPCLSVWRRLQD 303 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~----~~ilv~TP~~l~~~l~~~----~~----~~~~lde~d~l~~ 303 (317)
.+.+..+.... . .+..+...-...+ ..|+|+|...+...+... .. .+..+|||++...
T Consensus 310 ~~~f~~~~~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~ 379 (667)
T TIGR00348 310 MKEFQSLQKDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY 379 (667)
T ss_pred HHHHHhhCCCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc
Confidence 99999986421 1 1112222222223 238999999998644321 11 1578899987543
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-06 Score=90.51 Aligned_cols=114 Identities=12% Similarity=0.024 Sum_probs=72.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEE-----------------------EEccCCCch----hhh
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFV-----------------------EICHEYEKP----AKW 53 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~-----------------------~~~~~~~K~----~~L 53 (317)
+||||.++.+..++..++.+|..|...+.. . ..+++++ ++|+..+.. +.|
T Consensus 753 l~SATpiprtl~l~~~gl~d~~~I~~~p~~-r--~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 753 TLTATPIPRTLNMAMSGMRDLSIIATPPAR-R--LAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred EEcCCCCHHHHHHHHhhCCCcEEEecCCCC-C--CCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 589999888889999999999888765433 1 2244333 333221111 111
Q ss_pred hhhcc------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 54 WDSNN------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 54 ~~ll~------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
..++. +||+|+| +|++|+.+|||| +||+|+ .+++.++.....+-. -...++
T Consensus 830 ~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI------P~v~~VIi~~ad~fg-----laq~~Q 898 (1147)
T PRK10689 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI------PTANTIIIERADHFG-----LAQLHQ 898 (1147)
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc------ccCCEEEEecCCCCC-----HHHHHH
Confidence 11110 8999998 899999999999 999999 788887732211111 024666
Q ss_pred HHHHHCCceeecC
Q psy10677 116 SFRKEHNITLIGQ 128 (317)
Q Consensus 116 ~~~~~~~i~~~g~ 128 (317)
..++.++..-.|.
T Consensus 899 r~GRvGR~g~~g~ 911 (1147)
T PRK10689 899 LRGRVGRSHHQAY 911 (1147)
T ss_pred HhhccCCCCCceE
Confidence 6666666554443
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.1e-06 Score=84.86 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCCchhhhhccccccccC----cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA----KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g----~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++-|..|...+. +. ...+ +.+-||||||-+|+=.+- ...++ |-++|||+|-..|-.|+.+
T Consensus 198 ~Ln~~Q~~a~~~i~--~~~~~~~~~L----l~GvTGSGKTEvYl~~i~-~~L~~-------GkqvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 198 ALNQEQQAAVEAIL--SSLGGFAPFL----LDGVTGSGKTEVYLEAIA-KVLAQ-------GKQVLVLVPEIALTPQLLA 263 (730)
T ss_pred ccCHHHHHHHHHHH--Hhccccccee----EeCCCCCcHHHHHHHHHH-HHHHc-------CCEEEEEeccccchHHHHH
Confidence 67899999999998 44 5566 789999999999965544 44442 5799999999999999988
Q ss_pred HHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCch
Q psy10677 242 VISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSV 297 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde 297 (317)
.++.... .+++.+.+|.+..+....+.+ |+|||=--| +.--.++.+.++||
T Consensus 264 rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--F~Pf~~LGLIIvDE 321 (730)
T COG1198 264 RFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--FLPFKNLGLIIVDE 321 (730)
T ss_pred HHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--cCchhhccEEEEec
Confidence 8876644 688999999998887776655 799985433 23345677777774
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=80.53 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=98.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +.-.||-|||++..+|+.-..+. |-.+-|++..--||..=.+++..+-
T Consensus 80 ydVQliGglvLh--~G~--I----AEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 80 YDVQIIGGIILD--LGS--V----AEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CchHHHHHHHHh--cCC--e----eeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 899988776666 674 6 78899999999999999765443 5568888999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
..+|+++.++..+.+..+....... |+-||...+. |+|.. ..+++..+||+|.+|
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999999999999888877777766 9999999875 45554 367788999999865
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-06 Score=91.50 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=69.8
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++..-. ...++++|..+.++... ....+|.|.|+.++..+| ..|.++++
T Consensus 274 ~~SAT~~~r~~--~~~l~~~~l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~l 349 (1638)
T PRK14701 274 VASATGKAKGD--RVKLYRELLGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEI 349 (1638)
T ss_pred EEecCCCchhH--HHHHhhcCeEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHH
Confidence 48999996411 12345788888998776 577889999988765544 45555553
Q ss_pred -------------CCCCccc---eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCC
Q psy10677 59 -------------GHYPKSV---RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPS 102 (317)
Q Consensus 59 -------------lhg~~~q---~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~ 102 (317)
+||+..+ +|++|+++|||| |||+|+ .+ +..+++|++|.
T Consensus 350 a~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDi------P~~Vryvi~~~~Pk 412 (1638)
T PRK14701 350 EKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDL------PERIRFAVFYGVPK 412 (1638)
T ss_pred HHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCcc------CCccCEEEEeCCCC
Confidence 8888666 999999999999 499999 66 67788888886
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=78.79 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=75.8
Q ss_pred CcccCCChHHHHHHHHhc--CCCEEEEEcCCCCCCCcCcEE-------------------------EEEEccCCCchhhh
Q psy10677 1 MWSATWPREIQKLAKEFL--SDPIQLNVGSANLAANPNIKQ-------------------------FVEICHEYEKPAKW 53 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~~i~q-------------------------~~~~~~~~~K~~~L 53 (317)
+||||.++.+++.....+ .+|..+...-. ..++.. -.++|...+..+.+
T Consensus 167 ~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~l 242 (470)
T TIGR00614 167 ALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQV 242 (470)
T ss_pred EEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHH
Confidence 479999999877665554 45644332211 112211 13344443333334
Q ss_pred hhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 54 WDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 54 ~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
...|+ +||+|++ +|++|+.+|||| ++|+|+ .++..|++|++|... +++
T Consensus 243 a~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~------p~V~~VI~~~~P~s~------~~y 310 (470)
T TIGR00614 243 TASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK------PDVRFVIHYSLPKSM------ESY 310 (470)
T ss_pred HHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc------ccceEEEEeCCCCCH------HHH
Confidence 43332 9999998 899999999999 999999 899999999998754 678
Q ss_pred HHHHHHHCCceeecCC
Q psy10677 114 IDSFRKEHNITLIGQN 129 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~ 129 (317)
+++.++..+.+..|..
T Consensus 311 ~Qr~GRaGR~G~~~~~ 326 (470)
T TIGR00614 311 YQESGRAGRDGLPSEC 326 (470)
T ss_pred HhhhcCcCCCCCCceE
Confidence 8888777775544443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.5e-05 Score=79.96 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=58.8
Q ss_pred Cchhhhhcccccc--cc-----CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQ-----AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~-----g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+-|.+..-.+.+ .+ ++.++ +.||||+|||+||++|.+...... +-++||=+.|..|-.|+.
T Consensus 27 R~~Q~~M~~~V~~al~~~~~~~~~~lv----iEAgTGtGKTlaYLlPai~~A~~~-------~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 27 RAGQRQMIAEVAKTLAGEYLKDGRILV----IEAGTGVGKTLSYLLAGIPIARAE-------KKKLVISTATVALQEQLV 95 (697)
T ss_pred CHHHHHHHHHHHHHHhcccccccceEE----EECCCCcchhHHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHHH
Confidence 7888885544432 02 46688 999999999999999998776643 457999999999999995
Q ss_pred H-HHHHHhcCC--CcEEEEEECC
Q psy10677 241 A-VISIFSRTM--RIRHACLYGG 260 (317)
Q Consensus 241 ~-~~~~l~~~~--~~~~~~~~gg 260 (317)
. .+-.+.+.+ .++++++-|-
T Consensus 96 ~kDlP~l~~~l~~~~~~~llKGr 118 (697)
T PRK11747 96 SKDLPLLLKISGLDFKFTLAKGR 118 (697)
T ss_pred hhhhhHHHHHcCCCceEEEEcCc
Confidence 3 333333332 5777766554
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-05 Score=84.74 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=51.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ +|++|+++|||| ++|+|+ .++..|++|++|..- +.++++.+|.++.+..
T Consensus 710 YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk------PDVR~VIHydlPkSi------EsYyQriGRAGRDG~~ 777 (1195)
T PLN03137 710 YHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK------PDVRFVIHHSLPKSI------EGYHQECGRAGRDGQR 777 (1195)
T ss_pred eeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc------cCCcEEEEcCCCCCH------HHHHhhhcccCCCCCC
Confidence 9999998 999999999999 999999 899999999999754 7888888888776555
Q ss_pred cCC
Q psy10677 127 GQN 129 (317)
Q Consensus 127 g~~ 129 (317)
|..
T Consensus 778 g~c 780 (1195)
T PLN03137 778 SSC 780 (1195)
T ss_pred ceE
Confidence 543
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.2e-07 Score=86.07 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=78.6
Q ss_pred HHHHHHHh-c-CCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc-----------------------------
Q psy10677 10 IQKLAKEF-L-SDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN----------------------------- 58 (317)
Q Consensus 10 v~~l~~~~-l-~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~----------------------------- 58 (317)
++.|.++. + .+|..|.+.+.. ++...+....+.|+..+|--.|..+|.
T Consensus 411 iq~Lmk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 411 IQHLMKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred HHHHHHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 44444332 3 367888887766 455555555555655555555554443
Q ss_pred ---CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 59 ---GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 ---lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
||..|.| +|++....|||| |||+|| ..+.+|++|..|... +-|||+=+++.++
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDI------p~V~HVIHYqVPrts------eiYVHRSGRTARA 557 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDI------PGVQHVIHYQVPRTS------EIYVHRSGRTARA 557 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCC------CCcceEEEeecCCcc------ceeEecccccccc
Confidence 9999999 999999999999 999999 899999999999865 6688888888877
Q ss_pred eeecCC
Q psy10677 124 TLIGQN 129 (317)
Q Consensus 124 ~~~g~~ 129 (317)
.-+|..
T Consensus 558 ~~~Gvs 563 (731)
T KOG0347|consen 558 NSEGVS 563 (731)
T ss_pred cCCCeE
Confidence 777743
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.5e-06 Score=78.23 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=91.6
Q ss_pred CcccCCC-hHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CC-Cchhhhhhhcc-------------------
Q psy10677 1 MWSATWP-REIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EY-EKPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~-~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~-~K~~~L~~ll~------------------- 58 (317)
+.|||+. -+|.+++.+.|+-|.-|.+..++ ..++.++|.+..+. .- .-..-|+..+.
T Consensus 405 vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~ 483 (725)
T KOG0349|consen 405 VCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPEN 483 (725)
T ss_pred eeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCC
Confidence 3688876 57999999999999999998888 67888888875543 22 22333333332
Q ss_pred ------------------------------------------------------CCCCccc--------eeecCccccee
Q psy10677 59 ------------------------------------------------------GHYPKSV--------RFVLGTAGFLL 76 (317)
Q Consensus 59 ------------------------------------------------------lhg~~~q--------~F~~g~~~iLv 76 (317)
+|||..+ .|++++++.||
T Consensus 484 ~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 484 PSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLI 563 (725)
T ss_pred hhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEE
Confidence 9999844 99999999999
Q ss_pred c----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 77 S----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 77 a----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
| |||+|| .....++|..+|.+. ..++|++.+-.++...|-++
T Consensus 564 ctdvaargldi------~g~p~~invtlpd~k------~nyvhrigrvgraermglai 609 (725)
T KOG0349|consen 564 CTDVAARGLDI------TGLPFMINVTLPDDK------TNYVHRIGRVGRAERMGLAI 609 (725)
T ss_pred Eehhhhccccc------cCCceEEEEecCccc------chhhhhhhccchhhhcceeE
Confidence 9 999999 888888888999876 78999998888777666543
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=78.94 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=49.9
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..|++|++|... ++++++.++.++.+..
T Consensus 266 ~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi------p~V~~VI~~d~P~s~------~~y~Qr~GRaGR~G~~ 333 (607)
T PRK11057 266 YHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK------PNVRFVVHFDIPRNI------ESYYQETGRAGRDGLP 333 (607)
T ss_pred ecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC------CCcCEEEEeCCCCCH------HHHHHHhhhccCCCCC
Confidence 9999997 999999999999 999999 899999999998754 7888888888776544
Q ss_pred cC
Q psy10677 127 GQ 128 (317)
Q Consensus 127 g~ 128 (317)
|.
T Consensus 334 ~~ 335 (607)
T PRK11057 334 AE 335 (607)
T ss_pred ce
Confidence 43
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.5e-05 Score=83.54 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=70.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEE-----------------------EEEEccCCCchhhhhhhc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-----------------------FVEICHEYEKPAKWWDSN 57 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q-----------------------~~~~~~~~~K~~~L~~ll 57 (317)
+||||.++....++...+.++..|...+.+ . ..|++ .+++|+..+..+.+...|
T Consensus 604 ~~SATpiprtl~~~l~g~~d~s~I~~~p~~-R--~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 604 TLSATPIPRTLHMSMSGIRDLSIIATPPED-R--LPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred EEecCCCHHHHHHHHhcCCCcEEEecCCCC-c--cceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 589998777777877777888776654332 1 12333 333333322222221111
Q ss_pred c----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 58 N----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 58 ~----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+ +||+|++ +|++|+.+|||| +||+|+ .++..+++++.+... . ....+
T Consensus 681 ~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI------p~v~~VIi~~a~~~g-l----s~l~Q 749 (926)
T TIGR00580 681 RELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI------PNANTIIIERADKFG-L----AQLYQ 749 (926)
T ss_pred HHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc------ccCCEEEEecCCCCC-H----HHHHH
Confidence 1 9999998 999999999999 999999 888888887776532 1 23445
Q ss_pred HHHHHCCceeec
Q psy10677 116 SFRKEHNITLIG 127 (317)
Q Consensus 116 ~~~~~~~i~~~g 127 (317)
..++.++..-.|
T Consensus 750 r~GRvGR~g~~g 761 (926)
T TIGR00580 750 LRGRVGRSKKKA 761 (926)
T ss_pred HhcCCCCCCCCe
Confidence 444444443333
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.3e-05 Score=75.57 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=39.6
Q ss_pred CCCCccc------------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 59 GHYPKSV------------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 59 lhg~~~q------------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
+||++++ .|++|+.++||| +||+|+ +...++++..|. ++.+++.++.++
T Consensus 254 ~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi-------~~~~vi~~~~~~--------~~~iqr~GR~gR 318 (358)
T TIGR01587 254 LHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-------SADVMITELAPI--------DSLIQRLGRLHR 318 (358)
T ss_pred EECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc-------CCCEEEEcCCCH--------HHHHHHhccccC
Confidence 8999976 699999999999 999998 244555555442 477888888777
Q ss_pred cee
Q psy10677 123 ITL 125 (317)
Q Consensus 123 i~~ 125 (317)
.+-
T Consensus 319 ~g~ 321 (358)
T TIGR01587 319 YGR 321 (358)
T ss_pred CCC
Confidence 644
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.4e-05 Score=69.30 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.+|+-|..+-..++. .+.+|.+ +.|-||+|||-- +.+.++....+ |.++.|.+|--..|..++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~l----v~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTL----VWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEE----EEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHH
Confidence 568899876544431 2778999 999999999953 45667776654 778999999999898888888
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
+.--. ++.+.++||+.+..-+ ..++|+|-..|+.+-+ .+++..+||.|.
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~fr----~plvVaTtHQLlrFk~--aFD~liIDEVDA 213 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYFR----APLVVATTHQLLRFKQ--AFDLLIIDEVDA 213 (441)
T ss_pred HHhhc--cCCeeeEecCCchhcc----ccEEEEehHHHHHHHh--hccEEEEecccc
Confidence 76555 5788999999887544 2489999988888755 788889998763
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.9e-05 Score=79.56 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=75.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCch-----hhhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKP-----AKWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~-----~~L~~ll~----------------- 58 (317)
+||||++.+. + ..|+.++..|.+.... ..|+++|..++..+++ ..+..+++
T Consensus 151 lmSATl~~~~--l-~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 151 AMSATLDGER--L-SSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIR 223 (819)
T ss_pred EEeCCCCHHH--H-HHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 5899999764 3 5678776666654322 2467777666544432 22222221
Q ss_pred ------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCC
Q psy10677 59 ------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQG 108 (317)
Q Consensus 59 ------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~ 108 (317)
+||+|++ .|++|+.+|+|| +||+|| .++..|+++.++.......
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItI------p~V~~VID~Gl~r~~~yd~ 297 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTI------EGIRVVIDSGLARVARFDP 297 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccc------cCceEEEEcCccccccccc
Confidence 8999997 899999999999 999999 8999999998775331111
Q ss_pred -----------CC-HHHHHHHHHHCCceeec
Q psy10677 109 -----------KT-KEEIDSFRKEHNITLIG 127 (317)
Q Consensus 109 -----------~~-~~~i~~~~~~~~i~~~g 127 (317)
.+ .+.+++-++.++. ..|
T Consensus 298 ~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G 327 (819)
T TIGR01970 298 KTGITRLETVRISQASATQRAGRAGRL-EPG 327 (819)
T ss_pred ccCCceeeEEEECHHHHHhhhhhcCCC-CCC
Confidence 11 3466777777665 344
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4e-05 Score=78.18 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=55.6
Q ss_pred Cchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|.+++-.+.. ..|+.++ +.||||+|||++|++|++...... +..++|.++|+.|-.|+.+....
T Consensus 17 r~~Q~~~~~~v~~a~~~~~~~~----iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 17 RPEQREMAEAVAEALKGGEGLL----IEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CHHHHHHHHHHHHHHcCCCcEE----EECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHHhhcc
Confidence 9999887743321 1566689 999999999999999999887653 47899999999999999888776
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 5
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.4e-05 Score=77.82 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=96.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. +|+ + +.-.||-||||+..+|+.-..+. |-.+-|++..--||..=.+++..+-
T Consensus 140 ydVQLiGgivLh--~G~--I----AEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y 203 (1025)
T PRK12900 140 YDVQLIGGIVLH--SGK--I----SEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVF 203 (1025)
T ss_pred cchHHhhhHHhh--cCC--c----cccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHH
Confidence 788876655555 665 5 67899999999999999766654 4467788888999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
..+|+++.|+..+.+..+....... |+-||+..+. |+|.. ..++|..+||+|.+|
T Consensus 204 ~flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 204 EFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 9999999999988888887777766 9999998774 44443 367788999999865
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.4e-05 Score=68.06 Aligned_cols=112 Identities=15% Similarity=0.039 Sum_probs=68.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
..+..+ ++-+.|+|||+..+.-+. .+....+. ...-.+||+||+ .+..|-.+++.++.....+++....|+.
T Consensus 24 ~~~g~l----L~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~ 95 (299)
T PF00176_consen 24 PPRGGL----LADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDS 95 (299)
T ss_dssp TT-EEE----E---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSC
T ss_pred CCCCEE----EEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhhhcccccccccccccccccc
Confidence 455677 888999999987655443 44432210 111249999999 7778999999999865456666665544
Q ss_pred CHHHHH-HHcc--CcEEECcHHHH--------HHHhcCCCCCCCCchhHHH
Q psy10677 262 SKMYQV-ILLR--ILTSATNTSLG--------IYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 262 ~~~~~~-~~~~--~ilv~TP~~l~--------~~l~~~~~~~~~lde~d~l 301 (317)
...... .... .++|+|...+. +.+..-..++.++||+..+
T Consensus 96 ~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 96 ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred ccccccccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 111111 1111 17999998888 5666666888999999887
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.9e-05 Score=77.46 Aligned_cols=114 Identities=9% Similarity=-0.048 Sum_probs=90.2
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++-..|++||=++. .|..|+ +.|+|.+|||+..-.++...- ..+-++++-+|-++|..|-++.++.
T Consensus 297 elD~FQk~Ai~~le--rg~SVF----VAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLE--RGDSVF----VAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred CccHHHHHHHHHHH--cCCeEE----EEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHH
Confidence 45889999999999 999999 999999999998665554321 1367999999999999999999887
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHH
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRL 301 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l 301 (317)
--...| .++|+....... ..+|-|-.-|-.||-+| ++.+.+.||.+=+
T Consensus 363 tF~Dvg----LlTGDvqinPeA----sCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYi 415 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQINPEA----SCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYI 415 (1248)
T ss_pred hccccc----eeecceeeCCCc----ceEeehHHHHHHHHhcccchhhccceEEEeeeeec
Confidence 665434 788887665443 37899999998888886 6777888876543
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=74.74 Aligned_cols=74 Identities=8% Similarity=-0.036 Sum_probs=60.1
Q ss_pred CCCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..+.|.|.+.+..+.. ..|.+.+ +.||||+|||+|.+.|.|......+ ..++.++.+.|..=..|+.++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~l----lEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAI----LEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceE----EeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHH
Confidence 3348999887755432 2788999 9999999999999999999876532 347999999999989999999
Q ss_pred HHHHh
Q psy10677 243 ISIFS 247 (317)
Q Consensus 243 ~~~l~ 247 (317)
++++.
T Consensus 80 lk~~~ 84 (705)
T TIGR00604 80 LRKLM 84 (705)
T ss_pred HHhhh
Confidence 99864
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.3e-05 Score=77.88 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=94.3
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|+|.+.+-++.. -..+++ +.+|||||||++|.+.+..-+... ++-++++++|-+.|+..-.+..++
T Consensus 927 ~fn~~q~~if~~~y~-td~~~~----~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYH-TDLNFL----LGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred ccCCccceEEEEEee-cchhhh----hcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhh
Confidence 458899999988774 566778 899999999999999998776653 457999999999999888887777
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-------CCCCCCCCchh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-------NDAHSPCLSVW 298 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-------~~~~~~~lde~ 298 (317)
....-|++++-++|+...+.....=..++|+||.+.-.+... ..+++.++||.
T Consensus 996 r~~~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~ 1055 (1230)
T KOG0952|consen 996 RDELPGIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEI 1055 (1230)
T ss_pred hcccCCceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeeccc
Confidence 666559999999999888744433344999999987765542 14555555543
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.9e-05 Score=77.79 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=64.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchh-----hhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPA-----KWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~-----~L~~ll~----------------- 58 (317)
+||||++.+ .+ ..|+.++..|.+.... ..|+++|..++..+|.. .+..+++
T Consensus 154 lmSATl~~~--~l-~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 154 IMSATLDND--RL-QQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EEecCCCHH--HH-HHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 589999976 34 4677776666554222 24777777666555543 2333322
Q ss_pred ------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 ------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 ------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||+|++ .|++|+.+|+|| +||+|| .++..|+++.++.
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtI------p~V~~VID~Gl~r 294 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTI------EGIRLVVDSGLER 294 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccc------cCceEEEECCCcc
Confidence 8999997 799999999999 999999 8999999887654
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=51.21 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=35.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
+.||.|||||...+--+...+.... .. +-++++++||+..+..+.+.+
T Consensus 15 v~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 15 VQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 5999999999665544444442211 12 568999999999999998877
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=97.52 E-value=8.3e-05 Score=74.95 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..|++|++|..- ++++++.++.++.+
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~------p~v~~VI~~~~p~s~------~~y~Q~~GRaGR~G 319 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDK------PNVRFVIHYDMPGNL------ESYYQEAGRAGRDG 319 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcC------CCCCEEEEcCCCCCH------HHHhhhhccccCCC
Confidence 8999997 899999999999 999999 889999999998754 57777777766643
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00019 Score=74.62 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=93.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. .|+ + +.-.||-||||+..+|+.-..+. |-.+-|++..--||..=.+++..+-
T Consensus 171 yDVQliGgivLh--~G~--I----AEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 171 YDVQLIGGVVLH--QGK--I----AEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cchHHhhhhhhc--CCc--e----eeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHH
Confidence 677776554555 555 6 67899999999999999876664 4457788889999999999999999
Q ss_pred cCCCcEEEEEEC-CCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYG-GTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~g-g~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
..+|+++.|+.. +.+..+...+... |.-||...+. |+|.. ..++|..+||+|.+|
T Consensus 235 ~fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EFHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 999999999876 5566666666655 9999998774 44443 367888999999865
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00025 Score=61.82 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCC-CCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMP-KLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~-~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
|+++-|.+|+-.++ +... .+ +.||+|||||..- ..++..+.... ......+...|+++||..-+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~--~~~~~~~----i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 1 KLNESQREAIQSAL--SSNGITL----IQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp ---HHHHHHHHHHC--TSSE-EE----EE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCCEE----EECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 46889999999999 8877 78 8999999999433 34444442100 011235789999999999999998888
Q ss_pred HH
Q psy10677 244 SI 245 (317)
Q Consensus 244 ~~ 245 (317)
.+
T Consensus 74 ~~ 75 (236)
T PF13086_consen 74 KK 75 (236)
T ss_dssp HC
T ss_pred Hh
Confidence 87
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00026 Score=70.74 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=91.4
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+-|.|+.||-++= .+..|+ +.|.|.+|||.+.-.+|...+.. .-++++-+|-++|..|-|+.+..
T Consensus 129 ~LDpFQ~~aI~Cid--r~eSVL----VSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCID--RGESVL----VSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred ccCchHhhhhhhhc--CCceEE----EEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHH
Confidence 45899999999999 999999 99999999999988888776653 35899999999999999998876
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
=.+. +.+.+|+........ -+|-|-.-|-.++-+| .+...+.||.+=|-|
T Consensus 195 EF~D----VGLMTGDVTInP~AS----CLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 195 EFKD----VGLMTGDVTINPDAS----CLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred Hhcc----cceeecceeeCCCCc----eeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc
Confidence 5553 455677776643332 4788888888888886 456667777766655
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00065 Score=69.76 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=88.5
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++...|.+.+-.+= .++..+ ++|||.+|||.+--.. ++...+. .+.--+|+++||+.|+.|+...+..
T Consensus 511 ~Pd~WQ~elLDsvD--r~eSav----IVAPTSaGKTfisfY~-iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~Vya 578 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVD--RNESAV----IVAPTSAGKTFISFYA-IEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYA 578 (1330)
T ss_pred CCcHHHHHHhhhhh--cccceE----EEeeccCCceeccHHH-HHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHH
Confidence 44778888777766 889999 9999999999864333 3444443 2455789999999999999988887
Q ss_pred HhcC-CCcEEEEEECCCCHHHHHHHccC-cEEECcHHHHHHHhc--------CCCCCCCCchhH
Q psy10677 246 FSRT-MRIRHACLYGGTSKMYQVILLRI-LTSATNTSLGIYLQQ--------NDAHSPCLSVWR 299 (317)
Q Consensus 246 l~~~-~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~~~l~~--------~~~~~~~lde~d 299 (317)
.-.. .-.+...+.|....+-+...+.. |+|+-|..+..+|.. ..+++.+.||..
T Consensus 579 RF~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH 642 (1330)
T KOG0949|consen 579 RFDTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVH 642 (1330)
T ss_pred hhccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhh
Confidence 6532 33444566677777666664444 999999999988776 256667777654
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00054 Score=61.21 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECC-CCHHHHHHHccC----cEEECcHHHHHHHhcCCCCCC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG-TSKMYQVILLRI----LTSATNTSLGIYLQQNDAHSP 293 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg-~~~~~~~~~~~~----ilv~TP~~l~~~l~~~~~~~~ 293 (317)
...|.+||||.+-.-|..+.+.++.|... +.+++-++.- ....+|...++. |.|||||||..+++.+.+.+.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 45799999999988888888888877421 3455555544 477888888875 899999999999999876653
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=67.82 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=61.1
Q ss_pred CchhhhhccccccccC-c-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQA-K-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g-~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|..++-.+....+ . .++ +.||||+|||.+.+.+.+..+... ....++.+.+.|+|.+..++++.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v----l~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVV----LEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hHHHHHHHHHHHhcccccccEE----EEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHh
Confidence 7778888766653122 2 566 899999999999999999887652 12578999999999999999999998
Q ss_pred HhcCCCcE
Q psy10677 246 FSRTMRIR 253 (317)
Q Consensus 246 l~~~~~~~ 253 (317)
.....++.
T Consensus 269 ~~~~~~~~ 276 (733)
T COG1203 269 IFGLFSVI 276 (733)
T ss_pred hhcccccc
Confidence 87765443
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00085 Score=54.61 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=57.8
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+--.+|+|||--.+--++....+. +.+.|||.|||.+|..+++.++. .++++..-.-+. ...-+
T Consensus 9 ~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~-----~~~g~ 72 (148)
T PF07652_consen 9 LDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR-----THFGS 72 (148)
T ss_dssp EE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS---------SS
T ss_pred EecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec-----cccCC
Confidence 678899999998877777766543 67999999999999887776643 344433211111 11112
Q ss_pred C-cEEECcHHHHHHHhcC----CCCCCCCchhHH
Q psy10677 272 I-LTSATNTSLGIYLQQN----DAHSPCLSVWRR 300 (317)
Q Consensus 272 ~-ilv~TP~~l~~~l~~~----~~~~~~lde~d~ 300 (317)
. |-|.|-+.+..++.++ ..++..+||+.-
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHF 106 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT-
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEecccc
Confidence 2 6788888888776653 566777888753
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00076 Score=69.14 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=35.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..+++++.|.
T Consensus 511 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi------p~v~~VIi~~~~r 560 (681)
T PRK10917 511 LHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV------PNATVMVIENAER 560 (681)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc------CCCcEEEEeCCCC
Confidence 9999998 999999999999 999999 8888888888775
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.001 Score=62.88 Aligned_cols=25 Identities=16% Similarity=-0.089 Sum_probs=22.2
Q ss_pred CCCCccc--eeecCcccceec----ccccCC
Q psy10677 59 GHYPKSV--RFVLGTAGFLLS----AVSFSL 83 (317)
Q Consensus 59 lhg~~~q--~F~~g~~~iLva----arg~~~ 83 (317)
+||.++| +.+.++.++||| +||+|+
T Consensus 304 l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi 334 (357)
T TIGR03158 304 ITGFAPKKDRERAMQFDILLGTSTVDVGVDF 334 (357)
T ss_pred eecCCCHHHHHHhccCCEEEEecHHhcccCC
Confidence 7999998 667778899999 999999
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0036 Score=66.02 Aligned_cols=121 Identities=12% Similarity=-0.049 Sum_probs=77.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|+|..++-.++......++ +.-+.|-|||+-..+-+-..+.. +..-++||+||+ .|+.|-..++.+..
T Consensus 154 ~pHQl~~~~~vl~~~~~R~L----LADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 154 IPHQLYIAHEVGRRHAPRVL----LADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CHHHHHHHHHHhhccCCCEE----EEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 99999988776632334677 78899999999876655444433 223479999998 78888877775432
Q ss_pred cCCCcEEEEEECCCCHHHH---HHHc--cCcEEECcHHHH------HHHhcCCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQ---VILL--RILTSATNTSLG------IYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~---~~~~--~~ilv~TP~~l~------~~l~~~~~~~~~lde~d~l~ 302 (317)
++....+.++...... ...+ ..++|++-+.+. +.+.....++.++|||+.+-
T Consensus 223 ---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 223 ---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred ---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 3444444332211100 0111 237888877554 23455678999999999985
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0025 Score=67.54 Aligned_cols=126 Identities=13% Similarity=0.027 Sum_probs=82.4
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.+.+.|.+++.-++. ..|.+.+ ++-..|.|||+-- +.++.++.... +.....|||||. .+..|-.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGI----LADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGI----LADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEE----EEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHH
Confidence 348889988866541 2577788 8889999999864 33444444321 122357999996 5567788888
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHH--Hc----cCcEEECcHHHHH---HHhcCCCCCCCCchhHHHhh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVI--LL----RILTSATNTSLGI---YLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~--~~----~~ilv~TP~~l~~---~l~~~~~~~~~lde~d~l~~ 303 (317)
.+++. .+++..++|......... .+ -.|+|+|...+.. .+..-...+.++|||+++=.
T Consensus 239 ~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN 305 (1033)
T PLN03142 239 RRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN 305 (1033)
T ss_pred HHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCC
Confidence 88875 467777776544332211 11 1278898887753 44555677899999987643
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0022 Score=58.63 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=64.6
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+|+-|.+++-. ...+++ +.|..|||||.+.+--++..+...+ .+..+.|++++|+..|..+.+.+...
T Consensus 1 l~~eQ~~~i~~----~~~~~l----V~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS----TEGPLL----VNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS-----SSEEE----EEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHh
Confidence 46778887755 345667 8999999999988777776665432 23457999999999999999999987
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGI 283 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~ 283 (317)
+....... ...............+-|+|=..+..
T Consensus 69 l~~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~ 102 (315)
T PF00580_consen 69 LEEEQQES---SDNERLRRQLSNIDRIYISTFHSFCY 102 (315)
T ss_dssp HHHCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHH
T ss_pred cCcccccc---cccccccccccccchheeehhhhhhh
Confidence 65421100 00001222333444577777665543
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0035 Score=63.82 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=66.8
Q ss_pred eccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC
Q psy10677 193 KAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI 272 (317)
Q Consensus 193 ~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ 272 (317)
.+-+|||||-.|+=-+-..+.. |-++|||+|...|+.|+.+.+++... +-.++.+.++.+..+....+..
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHH
Confidence 3446999999997665544432 56899999999999999999987654 2468889999988877765544
Q ss_pred -------cEEECcHHHHHHHhcCCCCCCCCc
Q psy10677 273 -------LTSATNTSLGIYLQQNDAHSPCLS 296 (317)
Q Consensus 273 -------ilv~TP~~l~~~l~~~~~~~~~ld 296 (317)
|+|||-.-+.- =-.++.+.++|
T Consensus 236 ~~~G~~~IViGtRSAvFa--P~~~LgLIIvd 264 (665)
T PRK14873 236 VLRGQARVVVGTRSAVFA--PVEDLGLVAIW 264 (665)
T ss_pred HhCCCCcEEEEcceeEEe--ccCCCCEEEEE
Confidence 79999654432 23455666666
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0026 Score=64.63 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=83.6
Q ss_pred CCCchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.+...|..||..+.. .+|+ -++ ++.-||+|||... +.++.+|.+. +.--++|+|+-.+.|+.|-+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raL----lvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRAL----LVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEE----EEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHH
Confidence 337889888865532 0332 367 8889999999875 5677888775 3456899999999999999999
Q ss_pred HHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC----------CCCCCCCchhHH
Q psy10677 243 ISIFSRTM-RIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN----------DAHSPCLSVWRR 300 (317)
Q Consensus 243 ~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~----------~~~~~~lde~d~ 300 (317)
+..+...- .++...-.++.. -..|.++|-.++..-+... ..++.++|||+|
T Consensus 235 f~~~~P~~~~~n~i~~~~~~~-------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 235 FEDFLPFGTKMNKIEDKKGDT-------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred HHHhCCCccceeeeecccCCc-------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh
Confidence 88887653 233233222222 2349999999988766653 467888999876
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=70.73 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
.||+|++ .|++|+.++||| ++|+|+ .++..|++|+.|... .+.+++.++.++.
T Consensus 307 HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDI------g~VDlVIq~gsP~sV------as~LQRiGRAGR~ 371 (1490)
T PRK09751 307 HHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDM------GAVDLVIQVATPLSV------ASGLQRIGRAGHQ 371 (1490)
T ss_pred ccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCc------ccCCEEEEeCCCCCH------HHHHHHhCCCCCC
Confidence 6899998 999999999999 999999 899999999988654 6788888877654
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0027 Score=68.41 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=57.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC---chhhhhhhcc-------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE---KPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~---K~~~L~~ll~------------------- 58 (317)
+||||++. +.+++.|.+.|+ |.|.... ..|+++|..+...+ +.+.+..++.
T Consensus 223 LmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 223 ITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 58999985 578887777774 6664332 24677776654322 2222222210
Q ss_pred -----------------------CCCCccc-----eee-cCcccceec----ccccCCcCCCCCCcccccCCCC
Q psy10677 59 -----------------------GHYPKSV-----RFV-LGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP 99 (317)
Q Consensus 59 -----------------------lhg~~~q-----~F~-~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~ 99 (317)
+||++++ -|+ .|..+|+|| ++|+|| .++..|+++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITI------pgI~yVID~G 363 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTV------PGIKYVIDPG 363 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhcccc------CcceEEEECC
Confidence 8999997 444 477899999 999999 7888888875
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0061 Score=61.96 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
.+++.|..|+..++ .. ..++ +.||+|||||... .-++.++.. .+.++|+++||..-|.++.+.+.
T Consensus 157 ~ln~~Q~~Av~~~l--~~~~~~l----I~GpPGTGKT~t~-~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 157 NLNESQKEAVSFAL--SSKDLFL----IHGPPGTGKTRTL-VELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCHHHHHHHHHHh--cCCCeEE----EEcCCCCCHHHHH-HHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHH
Confidence 56999999999988 65 5677 8999999999654 344444443 25699999999999988887776
Q ss_pred HHhcCCCcEEEEE
Q psy10677 245 IFSRTMRIRHACL 257 (317)
Q Consensus 245 ~l~~~~~~~~~~~ 257 (317)
.. +++++-+
T Consensus 223 ~~----~~~vvRl 231 (637)
T TIGR00376 223 LC----DQKIVRL 231 (637)
T ss_pred hC----CCcEEEe
Confidence 53 4555444
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0049 Score=54.18 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=78.8
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-ccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN-FQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~-~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|+....|..|+=.+... +. - .+.|.+....+.+ .+|.|.+ .+.-.|.|||-+ ++|++..+..
T Consensus 4 ~w~p~~~P~wLl~E~e~~-il-i---------R~~Q~~ia~~mi~~~~~~n~v----~QlnMGeGKTsV-I~Pmla~~LA 67 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN-IL-I---------RPVQVEIAREMISPPSGKNSV----MQLNMGEGKTSV-IVPMLALALA 67 (229)
T ss_pred CCCchhChHHHHHHHHcC-ce-e---------eHHHHHHHHHHhCCCCCCCeE----eeecccCCccch-HHHHHHHHHc
Confidence 466666666666555433 22 2 6688887777663 2478888 889999999955 6899888887
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC-CCcEEE--EEECCCCHHH-HHH----------HccCcEEECcHH
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHA--CLYGGTSKMY-QVI----------LLRILTSATNTS 280 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~~~~~~--~~~gg~~~~~-~~~----------~~~~ilv~TP~~ 280 (317)
++ .-.+.+++| +.|..|..+.+..-... ++-++. -....++.+. ... .-..|+++||..
T Consensus 68 dg------~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEh 140 (229)
T PF12340_consen 68 DG------SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEH 140 (229)
T ss_pred CC------CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHH
Confidence 53 246666666 56999999888865443 333332 2223333221 111 112289999998
Q ss_pred HHHH
Q psy10677 281 LGIY 284 (317)
Q Consensus 281 l~~~ 284 (317)
++.+
T Consensus 141 ilSf 144 (229)
T PF12340_consen 141 ILSF 144 (229)
T ss_pred HHHH
Confidence 8654
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0053 Score=52.98 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=45.2
Q ss_pred CCchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
|++-|.+|+-.+++ ++. =++ ++|+.|||||.+ +-.+...+.. .+.++++++||...+..+.+..
T Consensus 2 L~~~Q~~a~~~~l~-~~~~~~~----l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 2 LNEEQREAVRAILT-SGDRVSV----LQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp S-HHHHHHHHHHHH-CTCSEEE----EEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCeEEE----EEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh
Confidence 58889999999973 332 355 679999999975 3345555554 3579999999999998877763
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0078 Score=61.61 Aligned_cols=107 Identities=9% Similarity=0.007 Sum_probs=68.8
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+|+.+.- .++..+|.-+.=.+| .|+|+.|+...+ +|-..-.-=+++...|+|||++.+ -+.+.+.
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~---------R~hQq~Aid~a~--~~F~~n~RGkLIMAcGTGKTfTsL-kisEala-- 205 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKP---------RPHQQTAIDAAK--EGFSDNDRGKLIMACGTGKTFTSL-KISEALA-- 205 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCC---------ChhHHHHHHHHH--hhcccccCCcEEEecCCCccchHH-HHHHHHh--
Confidence 5555432 455555554444456 999999998887 543221111133456899998863 4444443
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 265 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 265 (317)
..+.|+|+|+-.|..|..+....=. .+.++...++++.....
T Consensus 206 -------~~~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsr 247 (1518)
T COG4889 206 -------AARILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSR 247 (1518)
T ss_pred -------hhheEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccc
Confidence 2689999999999999876655432 35788888887755443
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0012 Score=69.50 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=63.2
Q ss_pred EEEEEEccCCCchhhhhhhcc---------CCCCccc--------eeecC--cccceec----ccccCCcCCCCCCcccc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN---------GHYPKSV--------RFVLG--TAGFLLS----AVSFSLPFRDDKTSVVT 94 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~---------lhg~~~q--------~F~~g--~~~iLva----arg~~~~lr~~~~d~~~ 94 (317)
+..+++|...+....|...|. +||+|++ .|+++ .++|||| +||+|+ ....+
T Consensus 494 ~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNl------q~a~~ 567 (956)
T PRK04914 494 EKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNF------QFASH 567 (956)
T ss_pred CeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCc------ccccE
Confidence 345567777666777766662 9999998 89874 6999999 999999 88999
Q ss_pred cCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 95 VPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 95 v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
|++|++|... ..+++++++.++++-++
T Consensus 568 VInfDlP~nP------~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 568 LVLFDLPFNP------DLLEQRIGRLDRIGQKH 594 (956)
T ss_pred EEEecCCCCH------HHHHHHhcccccCCCCc
Confidence 9999999765 68889999888887655
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=58.66 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=85.1
Q ss_pred CCCCchhhhhcccccc----c----cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHH
Q psy10677 165 KKCGDKESKNWTIPLN----F----QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELA 236 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~----~----~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa 236 (317)
+++.|+|.+.+..+.. . ....+| +.-..|+|||+-. ++.+..++++.+.....--++||++|. -|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCI----mAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCI----MADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPS-SLV 310 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceE----eeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccH-HHH
Confidence 4789999999977752 0 112233 3446799999754 566666666533211122579999995 577
Q ss_pred HHHHHHHHHHhcCCCcEEEEEECCCCH--HHH-------HHHccC-cEEECcHHH---HHHHhcCCCCCCCCchhHHHhh
Q psy10677 237 QQIQAVISIFSRTMRIRHACLYGGTSK--MYQ-------VILLRI-LTSATNTSL---GIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 237 ~Qi~~~~~~l~~~~~~~~~~~~gg~~~--~~~-------~~~~~~-ilv~TP~~l---~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.--++++.+|.....+....++|+.+. ..+ ...... +++-+=..+ .+.+..+...++++||.+++-.
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccc
Confidence 777788888877657888888888774 111 111111 344444444 4556678999999999877544
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.012 Score=57.26 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=50.9
Q ss_pred CchhhhhccccccccC-----cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQA-----KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g-----~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
+.=|-+||..+. .| +.-. ..|-||||||++-. -++..+ +--+||++|.+-||.|.|++
T Consensus 14 aGDQP~AI~~Lv--~gi~~g~~~Qt----LLGvTGSGKTfT~A-nVI~~~----------~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 14 AGDQPEAIAELV--EGIENGLKHQT----LLGVTGSGKTFTMA-NVIAKV----------QRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CCCcHHHHHHHH--HHHhcCceeeE----EeeeccCCchhHHH-HHHHHh----------CCCeEEEecchhHHHHHHHH
Confidence 888989998876 33 2334 56899999997642 223322 23489999999999999999
Q ss_pred HHHHhcCCCcEE
Q psy10677 243 ISIFSRTMRIRH 254 (317)
Q Consensus 243 ~~~l~~~~~~~~ 254 (317)
++.|..+.-+..
T Consensus 77 fk~fFP~NaVEY 88 (663)
T COG0556 77 FKEFFPENAVEY 88 (663)
T ss_pred HHHhCcCcceEE
Confidence 999986544443
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0076 Score=61.34 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..+++++.|.
T Consensus 488 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi------P~v~~VIi~~~~r 537 (630)
T TIGR00643 488 LHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV------PNATVMVIEDAER 537 (630)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc------CCCcEEEEeCCCc
Confidence 9999998 999999999999 999999 8888888888765
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=58.30 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=51.8
Q ss_pred CCCCCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 163 KNKKCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 163 ~~~~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..+.+.+-|.+|+...+ .-++ .+ +.||+|+|||.....-+.+.+ ++ +-++||.+||++-+.-|.+
T Consensus 182 ~~~~ln~SQk~Av~~~~--~~k~l~~----I~GPPGTGKT~TlvEiI~qlv-k~-------~k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAI--NNKDLLI----IHGPPGTGKTRTLVEIISQLV-KQ-------KKRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred CCccccHHHHHHHHHHh--ccCCceE----eeCCCCCCceeeHHHHHHHHH-Hc-------CCeEEEEcCchHHHHHHHH
Confidence 34577899999999988 5544 45 779999999988766555444 33 4689999999998888877
Q ss_pred HHH
Q psy10677 242 VIS 244 (317)
Q Consensus 242 ~~~ 244 (317)
.+.
T Consensus 248 rl~ 250 (649)
T KOG1803|consen 248 RLT 250 (649)
T ss_pred Hhc
Confidence 543
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.023 Score=57.93 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=50.0
Q ss_pred Cchhhhhccccccc--cC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNF--QA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~~--~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+..|..++..+.+. +| +..+ +.|-||||||+... -++..+ +-.+|||+|++.+|.|+++.++
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~----l~Gvtgs~kt~~~a-~~~~~~----------~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQT----LLGVTGSGKTFTMA-NVIAQV----------NRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEE----EECCCCcHHHHHHH-HHHHHh----------CCCEEEEECCHHHHHHHHHHHH
Confidence 99999999887620 22 2456 78999999997643 233322 2248999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 76 ~f~p~ 80 (655)
T TIGR00631 76 EFFPE 80 (655)
T ss_pred HhCCC
Confidence 99764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0053 Score=63.20 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=97.5
Q ss_pred ccCcCCCCCCCcCCCCCCCCchhhhhc--cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceE
Q psy10677 149 PMKPKTTNNENNHNKNKKCGDKESKNW--TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIA 226 (317)
Q Consensus 149 ~l~~~g~~~p~~~~~~~~~t~iQ~~~i--p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~a 226 (317)
..+..|.... ...|.+++ |.++ .++|.+ -.+||+.|||++.-+=++..+...+ -.+
T Consensus 215 ~~~~kgi~~~---------fewq~ecls~~~~~--e~~nli----ys~Pts~gktlvaeilml~~~l~~r-------r~~ 272 (1008)
T KOG0950|consen 215 YAKDKGILKL---------FEWQAECLSLPRLL--ERKNLI----YSLPTSAGKTLVAEILMLREVLCRR-------RNV 272 (1008)
T ss_pred HHHhhhHHHH---------HHHHHHHhcchhhh--cccceE----EeCCCccchHHHHHHHHHHHHHHHh-------hce
Confidence 3445677777 99999887 7788 999999 9999999999999999998887653 246
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHH----HHHhcCCCC---CCCCchhH
Q psy10677 227 LVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLG----IYLQQNDAH---SPCLSVWR 299 (317)
Q Consensus 227 lil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~----~~l~~~~~~---~~~lde~d 299 (317)
+.+.|--.-++.-...+..+....|+.+-+.+|+.+.....+. ..+-|||-.+=. .+++.++++ +.++||.+
T Consensus 273 llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~-~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 273 LLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKR-ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred eEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccc-eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 6666776666666667777777889999888877776544332 237888876543 456666544 67788876
Q ss_pred HHhh
Q psy10677 300 RLQD 303 (317)
Q Consensus 300 ~l~~ 303 (317)
.+.|
T Consensus 352 mi~d 355 (1008)
T KOG0950|consen 352 MIGD 355 (1008)
T ss_pred eeec
Confidence 6655
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0072 Score=62.36 Aligned_cols=64 Identities=5% Similarity=-0.055 Sum_probs=47.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCC-CC-CcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRD-DK-TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~-~~-~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|||++.+ .++.| +|+|| +||+||++.+ +. ...-+|++|+.|... ..++++.+++.+.+
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~------r~y~qr~GRtGR~G 529 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESR------RVDLQLRGRSGRQG 529 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCH------HHHHHhhccccCCC
Confidence 9999877 55555 79998 9999996542 11 122389999999765 78899999888887
Q ss_pred eecCCC
Q psy10677 125 LIGQNI 130 (317)
Q Consensus 125 ~~g~~~ 130 (317)
-.|..+
T Consensus 530 ~~G~s~ 535 (790)
T PRK09200 530 DPGSSQ 535 (790)
T ss_pred CCeeEE
Confidence 777654
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.022 Score=58.61 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=91.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
..+|...-=.+. . .-+ .--.||-|||++..+|+.-.-+. |-.+.+++-.--||..=..++..+.
T Consensus 82 ~dVQliG~i~lh--~--g~i----aEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 82 FDVQLLGGIVLH--L--GDI----AEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred hhHHHhhhhhhc--C--Cce----eeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 556765443333 2 234 57789999999999998644332 4467788888999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~ 302 (317)
..+|+++.+...+.+..++..+... |.-+|...|- |++..+ .+++.++||.|.++
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 9999999999999999888887766 9999999884 444332 57788888888754
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.016 Score=54.66 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=58.3
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.|..|||||+..+ -++..+.. ...+..+++++++..|...+++.+..-.. ....
T Consensus 6 I~G~aGTGKTvla~-~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-------------------~~~~ 60 (352)
T PF09848_consen 6 ITGGAGTGKTVLAL-NLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN-------------------PKLK 60 (352)
T ss_pred EEecCCcCHHHHHH-HHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc-------------------cchh
Confidence 88999999997643 33333411 13467899999999999988877765440 0111
Q ss_pred CcEEECcHHHHHHHh-----cCCCCCCCCchhHHHhh
Q psy10677 272 ILTSATNTSLGIYLQ-----QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 272 ~ilv~TP~~l~~~l~-----~~~~~~~~lde~d~l~~ 303 (317)
...+..|..+...+. ....+...+|||.+|.+
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 61 KSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 234445555555444 35788899999999988
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.01 Score=54.01 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 128 QNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 128 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
..+|..+.+|+++++|+-+.+.+. .| .|- |+ +.+|||||||.+ +..
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~-----~~-----------------------~GL-IL----VTGpTGSGKSTT-lAa 144 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE-----SP-----------------------RGL-IL----VTGPTGSGKSTT-LAA 144 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh-----CC-----------------------Cce-EE----EeCCCCCcHHHH-HHH
Confidence 357888889999998887777332 23 111 34 899999999965 467
Q ss_pred HHHHHHcCC
Q psy10677 208 ALYHILKMP 216 (317)
Q Consensus 208 ~l~~l~~~~ 216 (317)
+++++.+..
T Consensus 145 mId~iN~~~ 153 (353)
T COG2805 145 MIDYINKHK 153 (353)
T ss_pred HHHHHhccC
Confidence 888888754
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.028 Score=53.25 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=51.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
.|..++ +.+|||+|||....-=.-..+... +...-++|-+-+ |.=+ .++++.+++.+++.+..+..+
T Consensus 136 ~g~ii~----lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~~~~~ 203 (374)
T PRK14722 136 RGGVFA----LMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLTTDSYRIGG---HEQLRIFGKILGVPVHAVKDG 203 (374)
T ss_pred CCcEEE----EECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecccccccH---HHHHHHHHHHcCCceEecCCc
Confidence 577788 999999999987644332222221 111123332222 2222 355666677677777766665
Q ss_pred CCHHHHHHHccC---cEEECcHHH
Q psy10677 261 TSKMYQVILLRI---LTSATNTSL 281 (317)
Q Consensus 261 ~~~~~~~~~~~~---ilv~TP~~l 281 (317)
.+.......+.+ ++|=|||+.
T Consensus 204 ~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 204 GDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ccHHHHHHHhcCCCEEEEcCCCCC
Confidence 555555554444 799999976
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.022 Score=56.83 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+++.-|..|+..+| ...=-+ +++|+|+|||.+-.- |+.|+.++ ....+|+.+|+.--+.|+.+.+.+
T Consensus 410 kLN~SQ~~AV~~VL--~rplsL----IQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 410 KLNASQSNAVKHVL--QRPLSL----IQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhchHHHHHHHHHH--cCCcee----eecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHHHh
Confidence 44999999999999 666666 789999999987643 44555543 356799999999999888776665
Q ss_pred HhcCCCcEEEEEEC
Q psy10677 246 FSRTMRIRHACLYG 259 (317)
Q Consensus 246 l~~~~~~~~~~~~g 259 (317)
- |++++-++.
T Consensus 477 t----gLKVvRl~a 486 (935)
T KOG1802|consen 477 T----GLKVVRLCA 486 (935)
T ss_pred c----CceEeeeeh
Confidence 3 678777653
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.037 Score=53.83 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=57.7
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCC---hh--HHHHHHHHHHHHHcCCCC---------C------------
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQS---RS--VFTYILPALYHILKMPKL---------E------------ 219 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGs---GK--Tla~~lp~l~~l~~~~~~---------~------------ 219 (317)
-+|+.|.+.+-.+. +=+|++ .|++| |+ +-.|++=+|+|+.+.+.. +
T Consensus 216 pltalQ~~L~~~m~--~YrDl~------y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~fr 287 (698)
T KOG2340|consen 216 PLTALQKELFKIMF--NYRDLL------YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFR 287 (698)
T ss_pred cchHHHHHHHHHHH--hhhhhc------cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhh
Confidence 36999999998888 888988 45544 44 567999999999754310 0
Q ss_pred --CCCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 220 --EGDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 220 --~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
.-..|.+||+||+||-|..+.+.+..++.+
T Consensus 288 DQG~tRpkVLivvpfRe~A~riVn~lis~l~G 319 (698)
T KOG2340|consen 288 DQGFTRPKVLIVVPFRESAYRIVNLLISLLSG 319 (698)
T ss_pred hcCCCCceEEEEecchHHHHHHHHHHHHHhcC
Confidence 012599999999999999999998888543
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.006 Score=43.91 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~ 121 (317)
+||++++ .|++|...+||| ++|+|+ .+...+..++.|... ..+....++-+
T Consensus 13 i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~------~~~~~vi~~~~~~~~------~~~~Q~~GR~~ 75 (78)
T PF00271_consen 13 IHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDL------PDASHVIFYDPPWSP------EEYIQRIGRAG 75 (78)
T ss_dssp ESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTS------TTESEEEESSSESSH------HHHHHHHTTSS
T ss_pred EECCCCHHHHHHHHHHhhccCceEEEeeccccccccc------cccccccccccCCCH------HHHHHHhhcCC
Confidence 8999987 999999999999 999999 788888888876543 45555554433
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.0072 Score=63.74 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=44.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
+||+|++ +|++|+.++||| ++|+|+ .++..|++|+.|... .+.+++.++.++
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDi------p~Vd~VI~~~~P~sv------~~ylQRiGRaGR 383 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDI------GYIDLVVLLGSPKSV------SRLLQRIGRAGH 383 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCC------CCCcEEEEeCCCCCH------HHHHHhcccCCC
Confidence 8999998 899999999999 999999 889999999988643 577777776654
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.059 Score=58.49 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=42.4
Q ss_pred CCCCccc-----eeecC-cccceec----ccccCCcCCCCCCcccccCCCCCCCccc------c-----CCCC-HHHHHH
Q psy10677 59 GHYPKSV-----RFVLG-TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNH------L-----QGKT-KEEIDS 116 (317)
Q Consensus 59 lhg~~~q-----~F~~g-~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~------i-----~~~~-~~~i~~ 116 (317)
+||+|++ .|+.+ ..+|+|| ++|+|| .++..|+++.++.... + ...+ .+.+++
T Consensus 312 Lhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTI------pgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 312 LYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTV------PGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred ccCCCCHHHHHHHhCCCCCceEEEeccHHHhcccc------CCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 8999997 56655 3589988 999999 8888888887543211 1 1112 467777
Q ss_pred HHHHCCceeec
Q psy10677 117 FRKEHNITLIG 127 (317)
Q Consensus 117 ~~~~~~i~~~g 127 (317)
-++.++.. .|
T Consensus 386 aGRAGR~~-~G 395 (1283)
T TIGR01967 386 KGRCGRVA-PG 395 (1283)
T ss_pred hhhhCCCC-Cc
Confidence 77777664 44
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.046 Score=56.06 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=55.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-. ...+++ +.|..|||||.+.+--+...+... ....-+.|+++.||..|..+.+.+..
T Consensus 196 ~L~~~Q~~av~~----~~~~~l----V~agaGSGKT~vl~~r~ayLl~~~----~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 196 PLNPSQARAVVN----GEDSLL----VLAGAGSGKTSVLVARAGWLLARG----QAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCHHHHHHHhC----CCCCeE----EEEeCCCCHHHHHHHHHHHHHHhC----CCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 469999998843 334577 899999999988765554444332 12345899999999999999988877
Q ss_pred HhcCCCcEEE
Q psy10677 246 FSRTMRIRHA 255 (317)
Q Consensus 246 l~~~~~~~~~ 255 (317)
.....++.+.
T Consensus 264 ~lg~~~v~v~ 273 (684)
T PRK11054 264 RLGTEDITAR 273 (684)
T ss_pred hcCCCCcEEE
Confidence 6543234433
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.052 Score=55.68 Aligned_cols=70 Identities=7% Similarity=-0.100 Sum_probs=52.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+|+.. ....++ +.|..|||||.+..--+...+.... ...-+.|+|+.|+..|..+.+.+.++
T Consensus 3 Ln~~Q~~av~~----~~g~~l----V~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 3 LNPGQQQAVEF----VTGPCL----VLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCHHHHHHHhC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 58899998854 334677 8999999999987666665554321 12347999999999999999988877
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 71 l~ 72 (672)
T PRK10919 71 LG 72 (672)
T ss_pred hC
Confidence 54
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.085 Score=56.20 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.++.-+ +.--+|||||++-+... ..+... ...|.+++|+=.++|-.|+.+.+.++........ .-.
T Consensus 272 ~~~~G~----IWHtqGSGKTlTm~~~A-~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~ 337 (962)
T COG0610 272 DGKGGY----IWHTQGSGKTLTMFKLA-RLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAE 337 (962)
T ss_pred cCCceE----EEeecCCchHHHHHHHH-HHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----ccc
Confidence 345566 77889999999744332 222222 3579999999999999999999999988643322 334
Q ss_pred CHHHHHHHcc----CcEEECcHHHHHHHhcC------C-CCCCCCchhHHHhh
Q psy10677 262 SKMYQVILLR----ILTSATNTSLGIYLQQN------D-AHSPCLSVWRRLQD 303 (317)
Q Consensus 262 ~~~~~~~~~~----~ilv~TP~~l~~~l~~~------~-~~~~~lde~d~l~~ 303 (317)
+..+-...+. .|+|+|=..+-..+... . =-...+|||+|-..
T Consensus 338 s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~ 390 (962)
T COG0610 338 STSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY 390 (962)
T ss_pred CHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc
Confidence 4454444444 38999999998877653 1 11345789987543
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.012 Score=60.41 Aligned_cols=70 Identities=4% Similarity=-0.027 Sum_probs=49.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCC---CCcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDD---KTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~---~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
|||++.| +|+.| .|+|| +||+||++... -.....+.+|+.|+.. .++++.+++.+.
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-------id~qr~GRtGRq 524 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-------VDLQLRGRSGRQ 524 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcH-------HHHHhhhcccCC
Confidence 9999998 55555 78999 99999976432 1245667888888754 558999999988
Q ss_pred eeecCCCCCCcccccC
Q psy10677 124 TLIGQNIPKPVKTLDE 139 (317)
Q Consensus 124 ~~~g~~~~~~~~~f~~ 139 (317)
+-.|... .+.+.+|
T Consensus 525 G~~G~s~--~~is~eD 538 (762)
T TIGR03714 525 GDPGSSQ--FFVSLED 538 (762)
T ss_pred CCceeEE--EEEccch
Confidence 8777654 3344444
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.11 Score=53.26 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=51.4
Q ss_pred CCCchhhhhccccccc--cC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNF--QA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~--~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++++.|..++..+.+. +| +..+ +.+.+|||||+... .++... +..+|||+|+.++|.|+++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~l----l~Gl~gs~ka~lia-~l~~~~----------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQT----LLGVTGSGKTFTMA-NVIARL----------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEE----EEcCCCcHHHHHHH-HHHHHh----------CCCEEEEECCHHHHHHHHHH
Confidence 3499999999888631 22 2456 88999999997743 233221 23599999999999999999
Q ss_pred HHHHhcC
Q psy10677 243 ISIFSRT 249 (317)
Q Consensus 243 ~~~l~~~ 249 (317)
++.+...
T Consensus 77 L~~~~~~ 83 (652)
T PRK05298 77 FKEFFPE 83 (652)
T ss_pred HHHhcCC
Confidence 9999754
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.017 Score=58.89 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=65.8
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
+.+++|...+..+.|...|. +||++++ +|+.|++.+||| +||+|+ .++..++++
T Consensus 444 ~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDi------P~v~lVvi~ 517 (655)
T TIGR00631 444 RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL------PEVSLVAIL 517 (655)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeee------CCCcEEEEe
Confidence 34566666666666666664 8999997 999999999988 999999 888888877
Q ss_pred C-----CCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcC
Q psy10677 99 P-----DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPK 153 (317)
Q Consensus 99 ~-----~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~ 153 (317)
+ .|.. ....+++.++..+. ..|.. ..|-+ .....+..++.+.
T Consensus 518 DadifG~p~~------~~~~iqriGRagR~-~~G~v-----i~~~~-~~~~~~~~ai~~~ 564 (655)
T TIGR00631 518 DADKEGFLRS------ERSLIQTIGRAARN-VNGKV-----IMYAD-KITDSMQKAIEET 564 (655)
T ss_pred CcccccCCCC------HHHHHHHhcCCCCC-CCCEE-----EEEEc-CCCHHHHHHHHHH
Confidence 7 3432 25788888887775 34432 23433 3445555555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.1 Score=54.03 Aligned_cols=71 Identities=10% Similarity=0.028 Sum_probs=52.9
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|++-|.+|+-. ....++ +.|..|||||.+..-=+...+.... ...-..|+|+-|+..|..+.+.+.+
T Consensus 4 ~Ln~~Q~~av~~----~~g~~l----V~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 4 GLNDKQREAVAA----PPGNLL----VLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred ccCHHHHHHHcC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHH
Confidence 459999998854 335678 9999999999886555544443211 1234899999999999999999988
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 72 ~~~ 74 (715)
T TIGR01075 72 LLG 74 (715)
T ss_pred Hhc
Confidence 764
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.11 Score=53.20 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=53.0
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+++-. .+.+++ +.|..|||||.+.+--+...+.... ......|+++.|+.-|.++.+.+.+.
T Consensus 2 Ln~~Q~~av~~----~~~~~~----V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY----VTGPCL----VLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 58889888743 445788 9999999999887766665554321 12357899999999999999988876
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 70 l~ 71 (664)
T TIGR01074 70 LG 71 (664)
T ss_pred hC
Confidence 64
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.28 Score=49.96 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
++.+.|.+.+.=+.. ..|-+.| ..-+-|=|||+-- +++|.++.... ..+|| -||+||-.-|.. -.+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingI----LaDEMGLGKTlQt-Is~l~yl~~~~---~~~GP-fLVi~P~StL~N-W~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGI----LADEMGLGKTLQT-ISLLGYLKGRK---GIPGP-FLVIAPKSTLDN-WMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccE----eehhcccchHHHH-HHHHHHHHHhc---CCCCC-eEEEeeHhhHHH-HHHHH
Confidence 446667665533321 3688888 8889999999742 34444544321 12455 477889766643 34445
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHH--HHccC----cEEECcHHHH---HHHhcCCCCCCCCchhHHHhh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQV--ILLRI----LTSATNTSLG---IYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~--~~~~~----ilv~TP~~l~---~~l~~~~~~~~~lde~d~l~~ 303 (317)
++|+. ++++++++|+....... ..+.. |+|+|=.-.+ +.++.-.-++.++|||+|+=.
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKN 303 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcc
Confidence 55555 68889998876433221 11111 5777765444 467777788999999998754
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.065 Score=55.78 Aligned_cols=105 Identities=15% Similarity=-0.054 Sum_probs=62.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc-CCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR-TMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~-~~~~~~~~~~gg 260 (317)
...-++ ++||||||||...=.-+++... ..+....+.=|-|--|..+.+.+..-.. ..|=.|+.-.-.
T Consensus 64 ~~~vvi----i~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf 132 (845)
T COG1643 64 QNQVVI----IVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF 132 (845)
T ss_pred hCCEEE----EeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe
Confidence 445566 8999999999875444443322 1233555566777666665555443332 223223222221
Q ss_pred CCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH
Q psy10677 261 TSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR 300 (317)
Q Consensus 261 ~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~ 300 (317)
.+. ...-..|-+.|.|-|+..++. ..++...+|||++
T Consensus 133 e~~---~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE 173 (845)
T COG1643 133 ESK---VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE 173 (845)
T ss_pred ecc---CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh
Confidence 111 111123889999999999885 4788889999864
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.098 Score=53.75 Aligned_cols=102 Identities=8% Similarity=-0.080 Sum_probs=62.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.||.|||||.+.+-++-+.+. ...-++|+++..+.|+.++.+.++...-. |+.. |.+.+.......-.
T Consensus 54 VRSpMGTGKTtaLi~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~---Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 54 VRSPMGTGKTTALIRWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN---YLDSDDYIIDGRPY 122 (824)
T ss_pred EECCCCCCcHHHHHHHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee---eecccccccccccc
Confidence 6899999999887554433332 13568999999999999998888754321 2221 21111110000111
Q ss_pred CcEEECcHHHHHHHhc--CCCCCCCCchhHHHhhh
Q psy10677 272 ILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQDI 304 (317)
Q Consensus 272 ~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~~ 304 (317)
+-+++.-..|..+-.. +..+++.|||+...+..
T Consensus 123 ~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~q 157 (824)
T PF02399_consen 123 DRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQ 157 (824)
T ss_pred CeEEEEehhhhhcccccccccCEEEEehHHHHHHH
Confidence 2455555566655432 24789999999999984
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.13 Score=53.32 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=52.3
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
|++-|.+|+-. ....++ +.|..|||||.+..-=+...+.... -..-..|+|+-|+..|..+.+.+.++
T Consensus 10 Ln~~Q~~av~~----~~g~~l----V~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 10 LNDKQREAVAA----PLGNML----VLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred cCHHHHHHHhC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 49999998853 335677 9999999999887655554443221 12347999999999999999999887
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 78 ~~ 79 (721)
T PRK11773 78 LG 79 (721)
T ss_pred hc
Confidence 64
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.023 Score=58.03 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=58.3
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
+.+++|...+..+.|..+|. +||++++ .|+.|++.++|| +||+|+ .++..++++
T Consensus 448 ~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl------p~v~lVii~ 521 (652)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI------PEVSLVAIL 521 (652)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc------cCCcEEEEe
Confidence 45667777667777776665 8999997 999999999988 999999 788877777
Q ss_pred CCCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 99 PDPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 99 ~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
+.+.... ......++++.++..+. ..|.
T Consensus 522 d~eifG~-~~~~~~yiqr~GR~gR~-~~G~ 549 (652)
T PRK05298 522 DADKEGF-LRSERSLIQTIGRAARN-VNGK 549 (652)
T ss_pred CCccccc-CCCHHHHHHHhccccCC-CCCE
Confidence 7432110 01125788888777764 3443
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.065 Score=49.84 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=27.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
++.|...+..+.. .+++++ ++|+|||||| +++-.++..+
T Consensus 134 ~~~~~~~L~~~v~-~~~~il----I~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 134 TAAQREAIIAAVR-AHRNIL----VIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred CHHHHHHHHHHHH-cCCeEE----EECCCCCCHH-HHHHHHHHhh
Confidence 4456666654442 788999 9999999999 5556666654
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.12 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=16.8
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEc
Q psy10677 3 SATWPREIQKLAKEFLSDPIQLNVG 27 (317)
Q Consensus 3 SAT~~~~v~~l~~~~l~~p~~i~v~ 27 (317)
-.|+.+.++.+...+=.|.+.++..
T Consensus 8 a~~~~eal~~ik~elG~dAvIls~r 32 (282)
T TIGR03499 8 APTMREALAKVKEELGPDAVILSTR 32 (282)
T ss_pred cCCHHHHHHHHHHHHCCCcEEEEee
Confidence 3567777777777766677776543
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.16 Score=53.59 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+..++. +..+||||||.+|+-.|+...... ..-+.||+||+.+.-..+.+.+.
T Consensus 58 ~~~n~~----~~M~TGtGKT~~~~~~i~~l~~~~------~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 58 DKANID----IKMETGTGKTYVYTRLMYELHQKY------GLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ccceEE----EEeCCCCCHHHHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHHHHhh
Confidence 345677 899999999999988887654432 34689999999988888876665
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.075 Score=46.17 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
.|.-|..++..++ ...-++ +.||.|||||+..+...++.+... .--+.+|.-|+-+
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~----~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVI----VNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVE 60 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEE----EE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--
T ss_pred CCHHHHHHHHHHH--hCCeEE----EECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCC
Confidence 3889999999999 888888 999999999999999998888752 2335666666543
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.23 Score=54.57 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=71.9
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+|+-|.+||- - .|.+++ +.|.-|||||...+--++..+... ..--+.|+++=|+.-|..+.+.+.+-
T Consensus 2 ~t~~Q~~ai~--~--~~~~~l----v~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 2 WTDEQWQAIY--T--RGQNIL----VSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCHHHHHHHh--C--CCCCEE----EEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 5889999986 3 889999 999999999999877777776542 11236899999999998888888765
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHH-HHhc
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGI-YLQQ 287 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~-~l~~ 287 (317)
.... +.-. -.......|...+...-|+|=..++. +++.
T Consensus 69 l~~~-~~~~--p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~ 107 (1232)
T TIGR02785 69 LQKA-LQQE--PNSKHLRRQLALLNTANISTLHSFCLKVIRK 107 (1232)
T ss_pred HHHH-HhcC--chhHHHHHHHhhccCCeEeeHHHHHHHHHHH
Confidence 5421 1000 01111334555555678899887764 4443
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.26 Score=47.52 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=52.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.-+. ++||||+|||.....=.-..+... +...-++|.+.|--.+ -.+++..+++.+|+.+..+....
T Consensus 190 ~g~vi~----lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~~ 258 (420)
T PRK14721 190 QGGVYA----LIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDIA 258 (420)
T ss_pred CCcEEE----EECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCHH
Confidence 566677 899999999987643222222221 1123466666663332 23446666666677766665554
Q ss_pred CHHHHHHHccC---cEEECcHHHH
Q psy10677 262 SKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 262 ~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
+.......++. ++|-|+|+..
T Consensus 259 dl~~al~~l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 259 DLQLMLHELRGKHMVLIDTVGMSQ 282 (420)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCc
Confidence 44444444433 7999998764
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.27 Score=49.80 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=49.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHH--HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY--ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~--~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|+.|+-..+ ..+-++ +.|++|+|||..- ++..+..+.. .....+++.+||..-|..+.+.+..
T Consensus 154 ~d~Qk~Av~~a~--~~~~~v----ItGgpGTGKTt~v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVAL--TRRISV----ISGGPGTGKTTTVAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHh--cCCeEE----EEeCCCCCHHHHHHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 578999999988 888888 9999999999753 3333322211 1245788899999888888776654
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 222 ~ 222 (615)
T PRK10875 222 A 222 (615)
T ss_pred h
Confidence 3
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.12 Score=51.65 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred cccCCChHHHHHHHHhcC--CCEEE--EEcCCCC-----CCC-------------cCcEE-EEEEccCCCchhhhhhhcc
Q psy10677 2 WSATWPREIQKLAKEFLS--DPIQL--NVGSANL-----AAN-------------PNIKQ-FVEICHEYEKPAKWWDSNN 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~--~p~~i--~v~~~~~-----~~~-------------~~i~q-~~~~~~~~~K~~~L~~ll~ 58 (317)
++||-++.++.-+...|. +|..+ +....++ ... ..-.+ -.++|..+.+.+-+..-|+
T Consensus 172 lTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~ 251 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLR 251 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHH
Confidence 689999998887777664 54332 2222221 000 00011 1334444444444444443
Q ss_pred --------CCCCccc--------eeecCcccceec--ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHH
Q psy10677 59 --------GHYPKSV--------RFVLGTAGFLLS--AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKE 120 (317)
Q Consensus 59 --------lhg~~~q--------~F~~g~~~iLva--arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~ 120 (317)
.||+|+. +|.+++.+|+|| |=|+-| ++.|+..|++|++|..- +++..+.++.
T Consensus 252 ~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGI----dKpdVRfViH~~lP~s~------EsYyQE~GRA 321 (590)
T COG0514 252 KNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGI----DKPDVRFVIHYDLPGSI------ESYYQETGRA 321 (590)
T ss_pred HCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCcc----CCCCceEEEEecCCCCH------HHHHHHHhhc
Confidence 9999996 999999999999 555443 11677779999999754 6777666655
Q ss_pred CC
Q psy10677 121 HN 122 (317)
Q Consensus 121 ~~ 122 (317)
++
T Consensus 322 GR 323 (590)
T COG0514 322 GR 323 (590)
T ss_pred cC
Confidence 54
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.071 Score=51.69 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=87.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-ccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN-FQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~-~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|..=.+.|.|--.|+-. +.+ .|.|..++..+.+ +..+.-+ +.-|-|+|||+.=+-++. .+
T Consensus 283 DFRND~~npdl~idLKPs--t~i---------RpYQEksL~KMFGNgRARSGi----IVLPCGAGKtLVGvTAa~-ti-- 344 (776)
T KOG1123|consen 283 DFRNDNVNPDLDIDLKPS--TQI---------RPYQEKSLSKMFGNGRARSGI----IVLPCGAGKTLVGVTAAC-TI-- 344 (776)
T ss_pred ccccCCCCCCCCcCcCcc--ccc---------CchHHHHHHHHhCCCcccCce----EEEecCCCCceeeeeeee-ee--
Confidence 344444556655555533 344 7799999988875 3345777 889999999986543322 11
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECc-------------HHH
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATN-------------TSL 281 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP-------------~~l 281 (317)
.-.+||||.+---+.|-..+++.|+.--+-.++..+.+...... .-..++|+|= .++
T Consensus 345 --------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~--~~~gvvvsTYsMva~t~kRS~eaek~ 414 (776)
T KOG1123|consen 345 --------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFP--SGAGVVVTTYSMVAYTGKRSHEAEKI 414 (776)
T ss_pred --------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCC--CCCcEEEEeeehhhhcccccHHHHHH
Confidence 34799999999999999999999987554455555443322111 1112566653 345
Q ss_pred HHHHhcCCCCCCCCchh
Q psy10677 282 GIYLQQNDAHSPCLSVW 298 (317)
Q Consensus 282 ~~~l~~~~~~~~~lde~ 298 (317)
.++|....-.+..|||.
T Consensus 415 m~~l~~~EWGllllDEV 431 (776)
T KOG1123|consen 415 MDFLRGREWGLLLLDEV 431 (776)
T ss_pred HHHHhcCeeeeEEeehh
Confidence 56777777777777864
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.13 Score=47.83 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=27.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
++-|...+-.+.. .+.+++ ++|+||||||.. +-.++..+.
T Consensus 130 ~~~~~~~L~~~v~-~~~nil----I~G~tGSGKTTl-l~aL~~~i~ 169 (323)
T PRK13833 130 TEAQASVIRSAID-SRLNIV----ISGGTGSGKTTL-ANAVIAEIV 169 (323)
T ss_pred CHHHHHHHHHHHH-cCCeEE----EECCCCCCHHHH-HHHHHHHHh
Confidence 4456655544442 678999 999999999954 345555554
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.53 Score=39.55 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=30.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+.||+|+|||..- +-++....+ .+..++++ .+.|-..++.+.+..+.
T Consensus 4 i~G~~G~GKT~l~-~~~~~~~~~-------~g~~v~~~-s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 4 LSGGPGTGKTTFA-LQFLYAGLA-------RGEPGLYV-TLEESPEELIENAESLG 50 (187)
T ss_pred EEcCCCCCHHHHH-HHHHHHHHH-------CCCcEEEE-ECCCCHHHHHHHHHHcC
Confidence 8899999999643 222222222 25567776 45677778877777663
|
A related protein is found in archaea. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.45 Score=46.08 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=44.6
Q ss_pred cCcCcccccceeccCCChhHHHHH-HHHHHHHHcCCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYI-LPALYHILKMPKLEEGDGPIALVLA-PT-RELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~-lp~l~~l~~~~~~~~~~~~~alil~-Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
.|+.++ +.+|||+|||.... |........ .+-++.++. -+ |.-+ .++++.+...+++.+....
T Consensus 220 ~~~~i~----~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~~~ 285 (424)
T PRK05703 220 QGGVVA----LVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEVVY 285 (424)
T ss_pred CCcEEE----EECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceEccC
Confidence 466777 89999999997543 222111111 123344433 22 3222 2455555555666655444
Q ss_pred CCCCHHHHHHHccC---cEEECcHH
Q psy10677 259 GGTSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 259 gg~~~~~~~~~~~~---ilv~TP~~ 280 (317)
...+.......+.. |+|=|||+
T Consensus 286 ~~~~l~~~l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 286 DPKELAKALEQLRDCDVILIDTAGR 310 (424)
T ss_pred CHHhHHHHHHHhCCCCEEEEeCCCC
Confidence 44333333333333 78999987
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.063 Score=55.00 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=50.2
Q ss_pred CCCCccc------eeecCcccceec----ccccCCcCCCCCC-cccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 59 GHYPKSV------RFVLGTAGFLLS----AVSFSLPFRDDKT-SVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 59 lhg~~~q------~F~~g~~~iLva----arg~~~~lr~~~~-d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
|||+-.. .|+.+...|+|| +||.||++..+.. ...+|++++.|... ..+.+..+++.+.+-.|
T Consensus 435 Lna~q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~------ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 435 LNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESR------RIDNQLRGRSGRQGDPG 508 (745)
T ss_pred eeCChHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcH------HHHHHHhccccCCCCCc
Confidence 8888332 899999999999 9999997633322 34588999988765 67888888888887777
Q ss_pred CCC
Q psy10677 128 QNI 130 (317)
Q Consensus 128 ~~~ 130 (317)
...
T Consensus 509 ~s~ 511 (745)
T TIGR00963 509 SSR 511 (745)
T ss_pred ceE
Confidence 543
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.45 Score=45.36 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=58.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
.++-+. +.||||.|||.+..==.....+.. +..--++|=.=| |-=| .++++-+++-+++.+..++..
T Consensus 202 ~~~vi~----LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA---~EQLk~Ya~im~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIA----LVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGA---VEQLKTYADIMGVPLEVVYSP 269 (407)
T ss_pred cCcEEE----EECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhH---HHHHHHHHHHhCCceEEecCH
Confidence 477778 999999999976421111111111 122345555544 5444 456777788888888898888
Q ss_pred CCHHHHHHHccC---cEEECcHH
Q psy10677 261 TSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 261 ~~~~~~~~~~~~---ilv~TP~~ 280 (317)
.+..+....+.+ |+|=|-||
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCC
Confidence 888777777766 89999885
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.2 Score=46.15 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=26.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++-|...+-.+.. .+.+++ ++|+||||||.. +-.++..+..
T Consensus 118 ~~~~~~~L~~~v~-~~~~il----I~G~tGSGKTTl-l~al~~~i~~ 158 (299)
T TIGR02782 118 TAAQRDVLREAVL-ARKNIL----VVGGTGSGKTTL-ANALLAEIAK 158 (299)
T ss_pred CHHHHHHHHHHHH-cCCeEE----EECCCCCCHHHH-HHHHHHHhhc
Confidence 3344444544442 677999 999999999954 3445555543
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.25 Score=44.37 Aligned_cols=41 Identities=5% Similarity=0.032 Sum_probs=34.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+..|...+-.+. +...++ +.||+|||||+..+.-.++.+..
T Consensus 61 n~~Q~~~l~al~--~~~lV~----i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 61 NEAQAHYLKAIE--SKQLIF----ATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred CHHHHHHHHHHh--cCCeEE----EECCCCCCHHHHHHHHHHHHHhc
Confidence 888999998888 778888 99999999999877777766643
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.32 Score=49.05 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=48.6
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHH--HHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT--YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla--~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
...|+.|+-.++ ..+-++ ++|+.|||||.. .++-.+...... ...++.++.+||..-|..+.+.+..
T Consensus 147 ~~~Qk~A~~~al--~~~~~v----itGgpGTGKTt~v~~ll~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALAL--KSNFSL----ITGGPGTGKTTTVARLLLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHh--hCCeEE----EEcCCCCCHHHHHHHHHHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 368999999999 888888 999999999974 333333322111 1136899999998888877766654
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 216 ~ 216 (586)
T TIGR01447 216 A 216 (586)
T ss_pred h
Confidence 3
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.11 Score=49.32 Aligned_cols=25 Identities=12% Similarity=-0.156 Sum_probs=18.8
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.++ +++|||||||.. +-.++.++..
T Consensus 151 lil----I~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 151 LGL----ICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred EEE----EECCCCCCHHHH-HHHHHHHHHh
Confidence 467 999999999954 3556777754
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.22 Score=47.67 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=45.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHHhcCCCcE
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE-LAQQIQAVISIFSRTMRIR 253 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre-La~Qi~~~~~~l~~~~~~~ 253 (317)
..|..|||||.+..+-++..+...+ .+..++++.||.. |-.-++..+......+++.
T Consensus 6 ~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~ 63 (396)
T TIGR01547 6 AKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGIN 63 (396)
T ss_pred EeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh
Confidence 6799999999999999998888741 3578999999966 8888888888776655543
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.082 Score=54.63 Aligned_cols=71 Identities=7% Similarity=-0.048 Sum_probs=51.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCC-C-CcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDD-K-TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~-~-~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|||++.+ .++.|. |+|| +||.||.+... . ...-+|++++.|... .-+.+..+++.+.+
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~------ri~~Ql~GRtGRqG 541 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESR------RIDNQLRGRSGRQG 541 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcH------HHHHHHhhhhccCC
Confidence 8998887 566665 8888 99999966432 1 122388999988765 67899999999888
Q ss_pred eecCCCCCCcccccC
Q psy10677 125 LIGQNIPKPVKTLDE 139 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~ 139 (317)
-.|... -+.|++|
T Consensus 542 ~~G~s~--~~~sleD 554 (796)
T PRK12906 542 DPGSSR--FYLSLED 554 (796)
T ss_pred CCcceE--EEEeccc
Confidence 888654 4445543
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.33 Score=50.30 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=53.0
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|++-|.+|+-. ...+++ +.|..|||||.+..-=+...+.... -..-+.|+++-|+.-|..+.+.+.+
T Consensus 4 ~Ln~~Q~~av~~----~~g~~l----V~AgaGSGKT~~l~~ria~Li~~~~----i~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 4 HLNPEQREAVKT----TEGPLL----IMAGAGSGKTRVLTHRIAHLIAEKN----VAPWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred ccCHHHHHHHhC----CCCCEE----EEeCCCCCHHHHHHHHHHHHHHcCC----CCHHHeeeeeccHHHHHHHHHHHHH
Confidence 469999998854 335678 9999999999887666665554321 1123789999999999999988887
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 72 ~~~ 74 (726)
T TIGR01073 72 LLG 74 (726)
T ss_pred Hhc
Confidence 754
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.42 Score=45.66 Aligned_cols=90 Identities=11% Similarity=-0.054 Sum_probs=46.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.+..++ +.||||+|||.+..==+ .++.... ...+-.+.+++ +.|.-|. .+++.++..+++.+.....
T Consensus 173 ~~~vi~----lvGptGvGKTTT~aKLA-~~~~~~~---~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~~~ 241 (388)
T PRK12723 173 KKRVFI----LVGPTGVGKTTTIAKLA-AIYGINS---DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAIES 241 (388)
T ss_pred CCeEEE----EECCCCCCHHHHHHHHH-HHHHhhh---ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEeeCc
Confidence 345677 89999999998653211 2222110 01122333333 2244443 3366777766776544432
Q ss_pred CCCHHHHHHHccC---cEEECcHHHH
Q psy10677 260 GTSKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 260 g~~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
............+ |+|=|+|+..
T Consensus 242 ~~~l~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 242 FKDLKEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCc
Confidence 2222222223333 7999999875
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.42 Score=45.76 Aligned_cols=85 Identities=6% Similarity=-0.050 Sum_probs=44.7
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC--cHHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP--TRELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P--treLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
++.+. ++||||+|||.....=.. .+.. .+.++.++.. -|.-+ .++++.+....++.+......
T Consensus 241 ~~vI~----LVGptGvGKTTTiaKLA~-~L~~-------~GkkVglI~aDt~RiaA---vEQLk~yae~lgipv~v~~d~ 305 (436)
T PRK11889 241 VQTIA----LIGPTGVGKTTTLAKMAW-QFHG-------KKKTVGFITTDHSRIGT---VQQLQDYVKTIGFEVIAVRDE 305 (436)
T ss_pred CcEEE----EECCCCCcHHHHHHHHHH-HHHH-------cCCcEEEEecCCcchHH---HHHHHHHhhhcCCcEEecCCH
Confidence 35667 899999999976543322 3332 1334444332 24222 233445555556665544332
Q ss_pred CCHHHHHHHcc-----C-cEEECcHHHH
Q psy10677 261 TSKMYQVILLR-----I-LTSATNTSLG 282 (317)
Q Consensus 261 ~~~~~~~~~~~-----~-ilv~TP~~l~ 282 (317)
.+.......++ + |+|=||||..
T Consensus 306 ~~L~~aL~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 306 AAMTRALTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCccccC
Confidence 23333332222 2 8999999854
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.54 Score=46.17 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=49.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.-+. ++||||+|||.+..-=.-....+. +..--++|-+=|-..+ ..++++.|++.+++.+.....+.
T Consensus 255 ~g~Vi~----LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 255 RGGVFA----LMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAA 323 (484)
T ss_pred CCcEEE----EECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCch
Confidence 344456 899999999987543222221221 1111234443332222 24566777776676665555554
Q ss_pred CHHHHHHHccC---cEEECcHHHH
Q psy10677 262 SKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 262 ~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
+.......++. ++|-|+|+..
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcCh
Confidence 44444444443 7999999553
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.097 Score=54.98 Aligned_cols=92 Identities=3% Similarity=-0.063 Sum_probs=58.7
Q ss_pred CCCCccc------eeecCcccceec----ccccCCcCCCCCCccc--ccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV------RFVLGTAGFLLS----AVSFSLPFRDDKTSVV--TVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q------~F~~g~~~iLva----arg~~~~lr~~~~d~~--~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
||+...+ .|+.+..+|+|| +||.||++...-..+. ++++++.|... .-+.+..+++.+.+-.
T Consensus 628 Lnakq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~------Rid~Ql~GRtGRqGdp 701 (1025)
T PRK12900 628 LNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESR------RIDRQLRGRAGRQGDP 701 (1025)
T ss_pred ecCCHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchH------HHHHHHhhhhhcCCCC
Confidence 7875333 999999999999 9999996653221111 23444444432 4578888888888888
Q ss_pred cCCCCCCcccccCC----CCChhhhcccCcCCCCCC
Q psy10677 127 GQNIPKPVKTLDET----NIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 127 g~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p 158 (317)
|... .+.|++|- .-++.+.+.+...|...+
T Consensus 702 GsS~--ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~ 735 (1025)
T PRK12900 702 GESV--FYVSLEDELMRLFGSDRVISVMDRLGHEEG 735 (1025)
T ss_pred cceE--EEechhHHHHHhhCcHHHHHHHHHcCCCCC
Confidence 8764 45555442 123456666666676665
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.11 Score=49.08 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=19.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.+.-++ ++||||||||... -.++..+.
T Consensus 133 ~~glil----I~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVF----ITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEE----EECCCCCCHHHHH-HHHHHHHh
Confidence 445677 9999999999754 44566654
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.069 Score=52.87 Aligned_cols=55 Identities=7% Similarity=-0.100 Sum_probs=42.7
Q ss_pred CCCCccc--------eeecCcccceec-----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCcee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS-----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITL 125 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva-----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~ 125 (317)
+||+|++ .|++|+.++||| ++|+|+ .+.+.++.+..+... ...++..+|.++..-
T Consensus 374 i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di------p~ld~vIl~~p~~s~------~~~~QriGR~~R~~~ 441 (501)
T PHA02558 374 VSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI------KNLHHVIFAHPSKSK------IIVLQSIGRVLRKHG 441 (501)
T ss_pred EeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc------ccccEEEEecCCcch------hhhhhhhhccccCCC
Confidence 9999997 788899999988 899999 788888866555432 456788777777543
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.62 Score=46.46 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=50.1
Q ss_pred hhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 170 KESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
||.+==..+-+..++-++ ++|..|||||.+.+--+...+...+. .-..+ .+||+.|.+-+..-|.+++=.|+..
T Consensus 213 IQkEQneIIR~ek~~ilV----VQGaAGSGKTtiALHRvAyLlY~~R~-~l~~k-~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 213 IQKEQNEIIRFEKNKILV----VQGAAGSGKTTIALHRVAYLLYGYRG-PLQAK-PVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred hhHhHHHHHhccCCCeEE----EecCCCCCchhHHHHHHHHHHhcccc-ccccC-ceEEEcCcHHHHHHHHHhchhhccC
Confidence 444433344433455566 78999999998876665555544321 11223 3999999999999999999888765
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.086 Score=51.87 Aligned_cols=66 Identities=5% Similarity=-0.208 Sum_probs=55.1
Q ss_pred CCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 164 NKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 164 ~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+.+..+|..++..+- +|++++ +...|.+||.++|.+.....+...+ .-..+++.||.|+++...+
T Consensus 284 ~E~~~~~~~~~~~~~~--~G~~~~----~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 284 GESGIAISLELLKFAS--EGRADG----GNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred ccchhhhhHHHHhhhh--hccccc----ccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCC
Confidence 3444889999999999 999999 9999999999999999888776653 4567888999999976543
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.41 Score=49.58 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
+++-|.+|+-.+. ..+-++ ++|+.|||||... -.++..+... +....+++++||..-|..+.+
T Consensus 324 l~~~Q~~Ai~~~~--~~~~~i----itGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 324 LSEEQKQALDTAI--QHKVVI----LTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCHHHHHHHHHHH--hCCeEE----EECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHH
Confidence 4999999999998 888888 9999999999643 2333333332 111568888999887777664
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.32 Score=41.26 Aligned_cols=47 Identities=6% Similarity=0.147 Sum_probs=30.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++++ +.|++|+|||.... .+...+... +..+ ..+++.+|...+..
T Consensus 46 ~~~~l~----l~G~~G~GKThLa~-ai~~~~~~~-------g~~v-~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLI----LYGPPGTGKTHLAV-AIANEAIRK-------GYSV-LFITASDLLDELKQ 92 (178)
T ss_dssp C--EEE----EEESTTSSHHHHHH-HHHHHHHHT-------T--E-EEEEHHHHHHHHHC
T ss_pred cCeEEE----EEhhHhHHHHHHHH-HHHHHhccC-------Ccce-eEeecCceeccccc
Confidence 788899 99999999997643 344445432 3344 44577888877764
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.42 Score=50.92 Aligned_cols=61 Identities=7% Similarity=-0.123 Sum_probs=45.4
Q ss_pred CCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|++-|.+|+..++ ++.+ ++ ++|+.|+|||.. +-.+...+.. .|..++.++||---|..+.
T Consensus 346 ~Ls~eQr~Av~~il--~s~~v~v----v~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 346 VLSGEQADALAHVT--DGRDLGV----VVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCHHHHHHHHHHh--cCCCeEE----EEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHh
Confidence 35999999999999 7766 45 889999999975 3334333332 3678999999987776664
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.54 Score=46.64 Aligned_cols=87 Identities=10% Similarity=-0.067 Sum_probs=43.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.|.-+. ++||||+|||....-=... +... ..+-++.++. +.|.-+ .++++.+...+++.+.....
T Consensus 349 ~G~vIa----LVGPtGvGKTTtaakLAa~-la~~-----~~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a~d 415 (559)
T PRK12727 349 RGGVIA----LVGPTGAGKTTTIAKLAQR-FAAQ-----HAPRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEADS 415 (559)
T ss_pred CCCEEE----EECCCCCCHHHHHHHHHHH-HHHh-----cCCCceEEEecccccccH---HHHHHHhhcccCceeEecCc
Confidence 677788 9999999999765322211 2111 1111232222 224333 23445555555655544433
Q ss_pred CCCHHHHHHHccC---cEEECcHHH
Q psy10677 260 GTSKMYQVILLRI---LTSATNTSL 281 (317)
Q Consensus 260 g~~~~~~~~~~~~---ilv~TP~~l 281 (317)
+.........+.+ |||=|||+.
T Consensus 416 ~~~L~~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 416 AESLLDLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHHHHHHhccCCEEEecCCCcc
Confidence 3333333333333 788888864
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.7 Score=34.93 Aligned_cols=13 Identities=8% Similarity=-0.263 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|++|+|||...
T Consensus 4 i~G~~G~GKT~l~ 16 (165)
T cd01120 4 VFGPTGSGKTTLA 16 (165)
T ss_pred EeCCCCCCHHHHH
Confidence 7899999999644
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.15 Score=48.67 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=35.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+||||||.++++|-+... ...++|.=|--|+........++.
T Consensus 4 v~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 4 VFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred EecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 899999999999999977431 246888888899987776665554
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.49 Score=42.55 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=43.8
Q ss_pred Cchhhhhcccccc-----ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN-----FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 168 t~iQ~~~ip~~l~-----~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..++..++-.+.. .++.+++ +.|++|+|||.-.. .+...+.+ .| ..++++++.+|+.++...
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~nl~----l~G~~G~GKThLa~-Ai~~~l~~-------~g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 85 PGIDKKALEDLASLVEFFERGENLV----LLGPPGVGKTHLAI-AIGNELLK-------AG-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cchhHHHHHHHHHHHHHhccCCcEE----EECCCCCcHHHHHH-HHHHHHHH-------cC-CeEEEEEHHHHHHHHHHH
Confidence 5566665544431 2677999 99999999996543 34444443 13 455567899999999886
Q ss_pred HHH
Q psy10677 243 ISI 245 (317)
Q Consensus 243 ~~~ 245 (317)
...
T Consensus 152 ~~~ 154 (254)
T COG1484 152 FDE 154 (254)
T ss_pred Hhc
Confidence 654
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.7 Score=41.66 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=31.3
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQ 237 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~ 237 (317)
.+++ +.|+||||||.+.. .++..+.. .++..+|+=|..+...
T Consensus 2 ~h~~----i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTL----ILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEE----EECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3556 99999999997766 66666654 3678888888777655
|
|
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.17 Score=49.51 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=37.7
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++ +.||||||||..|++|.+.. . .+ -++|.=|-.||+.......++.+
T Consensus 46 h~l----vig~tgSGKt~~~viP~ll~--~-------~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 46 HVL----VIGPTGSGKTTSFVIPNLLN--Y-------PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred EEE----EEeCCCCCccceeeHhHHHh--c-------cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 578 99999999999999998732 1 12 67788888898877776666554
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.2 Score=50.64 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=39.6
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
..++ +.||||||||..|++|-|... +.-+||+=|--|+........++.
T Consensus 159 ~hvL----viapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHAL----LFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEE----EEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4577 999999999999999998653 235888889999998877766664
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.71 Score=47.26 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=69.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg 260 (317)
.+-+-| ..-+-|=|||. =.++.+..|.... ..|| -||+||+.-| .++++.|.+.. .+++-..||.
T Consensus 417 ~~l~gI----LADEMGLGKTi-QvIaFlayLkq~g----~~gp-HLVVvPsSTl----eNWlrEf~kwCPsl~Ve~YyGS 482 (941)
T KOG0389|consen 417 KKLNGI----LADEMGLGKTI-QVIAFLAYLKQIG----NPGP-HLVVVPSSTL----ENWLREFAKWCPSLKVEPYYGS 482 (941)
T ss_pred ccccce----ehhhccCcchh-HHHHHHHHHHHcC----CCCC-cEEEecchhH----HHHHHHHHHhCCceEEEeccCc
Confidence 444556 67789999995 3455566666542 2344 5777896554 44455444443 5899999999
Q ss_pred CCHHHHHHHc-cC------cEEECcHHH------HHHHhcCCCCCCCCchhHHHhh
Q psy10677 261 TSKMYQVILL-RI------LTSATNTSL------GIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 261 ~~~~~~~~~~-~~------ilv~TP~~l------~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.....+.... .. ++++|=.-. -.++++.++++.+.||++-|=+
T Consensus 483 q~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN 538 (941)
T KOG0389|consen 483 QDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN 538 (941)
T ss_pred HHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc
Confidence 8766555433 22 566664333 2577888999999999886654
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.98 Score=48.36 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=98.4
Q ss_pred ccCCCCHHHHHHHHHHCCce---eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-
Q psy10677 105 HLQGKTKEEIDSFRKEHNIT---LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN- 180 (317)
Q Consensus 105 ~i~~~~~~~i~~~~~~~~i~---~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~- 180 (317)
.+..+-+.+++.|....+-. -.|...-++-..|..+...|.-... ... ...|...+--++.
T Consensus 321 ~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~L---------RdyQLeGlNWl~~~ 385 (1373)
T KOG0384|consen 321 DIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NEL---------RDYQLEGLNWLLYS 385 (1373)
T ss_pred hhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chh---------hhhhcccchhHHHH
Confidence 34444567777777665321 1233333333456666555544443 233 6667766654432
Q ss_pred -ccCcCcccccceeccCCChhHH---HHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEE
Q psy10677 181 -FQAKKFISVLQKKAEVQSRSVF---TYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHAC 256 (317)
Q Consensus 181 -~~g~dvi~~~~~~a~tGsGKTl---a~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~ 256 (317)
..+.++| ..-+-|=|||+ +|+--+.+... ..||. ||++|..-+ ..+-+.|...+++++++
T Consensus 386 W~~~~n~I----LADEmgLgktvqti~fl~~l~~~~~-------~~gpf-lvvvplst~----~~W~~ef~~w~~mn~i~ 449 (1373)
T KOG0384|consen 386 WYKRNNCI----LADEMGLGKTVQTITFLSYLFHSLQ-------IHGPF-LVVVPLSTI----TAWEREFETWTDMNVIV 449 (1373)
T ss_pred HHhcccce----ehhhcCCCcchHHHHHHHHHHHhhh-------ccCCe-EEEeehhhh----HHHHHHHHHHhhhceee
Confidence 3788998 88899999986 45444443332 23554 556675433 33444444445788899
Q ss_pred EECCCCHHHHHHHccC------------cEEECcHHHH---HHHhcCCCCCCCCchhHHHh
Q psy10677 257 LYGGTSKMYQVILLRI------------LTSATNTSLG---IYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 257 ~~gg~~~~~~~~~~~~------------ilv~TP~~l~---~~l~~~~~~~~~lde~d~l~ 302 (317)
..|.....+.+....- ++++|=..++ ..|..=.-.+..+|||+||=
T Consensus 450 y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 450 YHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred eecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcC
Confidence 9998876655543211 5888876664 34444455678899999875
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.72 Score=39.73 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=41.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH----
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ---- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---- 266 (317)
+.||||+|||.+.. -+..++... +.. -++|=+ ..|.=| .++++.+++.+++.+....-..+..+.
T Consensus 6 lvGptGvGKTTt~a-KLAa~~~~~-----~~~-v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 6 LVGPTGVGKTTTIA-KLAARLKLK-----GKK-VALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEESTTSSHHHHHH-HHHHHHHHT-----T---EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EECCCCCchHhHHH-HHHHHHhhc-----ccc-ceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 78999999997642 222333321 112 223322 335444 455667777667776655444332221
Q ss_pred HHHc-----cCcEEECcHHH
Q psy10677 267 VILL-----RILTSATNTSL 281 (317)
Q Consensus 267 ~~~~-----~~ilv~TP~~l 281 (317)
.... .-|+|=||||.
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSS
T ss_pred HHHHhhcCCCEEEEecCCcc
Confidence 1111 12899999865
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.22 Score=46.77 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=19.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+.+++ ++|+||||||.. +-.++..+
T Consensus 161 ~~~nil----I~G~tGSGKTTl-l~aLl~~i 186 (344)
T PRK13851 161 GRLTML----LCGPTGSGKTTM-SKTLISAI 186 (344)
T ss_pred cCCeEE----EECCCCccHHHH-HHHHHccc
Confidence 788999 999999999953 34445444
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.78 Score=48.18 Aligned_cols=114 Identities=11% Similarity=-0.076 Sum_probs=68.4
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH-hcC
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF-SRT 249 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~ 249 (317)
+.+.+..+. +..-++ ++|.||+|||.=----+|+.....+ .....++=-|-|--|..+++.+..= ...
T Consensus 178 r~~Il~~i~--~~qVvv----IsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 178 RDTILDAIE--ENQVVV----ISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred HHHHHHHHH--hCceEE----EeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 344445555 666677 9999999999865444555544432 3344555558888888887766543 233
Q ss_pred CCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC----CCCCCCCchh
Q psy10677 250 MRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN----DAHSPCLSVW 298 (317)
Q Consensus 250 ~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~----~~~~~~lde~ 298 (317)
.|-.+..-.+..+... ....++.||-|.|+..+..+ .+.-.++||.
T Consensus 247 ~g~~VGYqvrl~~~~s---~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEV 296 (924)
T KOG0920|consen 247 LGEEVGYQVRLESKRS---RETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEV 296 (924)
T ss_pred cCCeeeEEEeeecccC---CceeEEEecHHHHHHHhccCcccccCceeeeeeE
Confidence 3433333333222211 11348999999999999874 3444567765
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.64 Score=48.36 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=44.8
Q ss_pred CCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++-|..|+-.++ .+ +-++ ++|+.|+|||.. +-.+..+... .+..++.++||.--|..+.+
T Consensus 352 ~Ls~~Q~~Av~~i~--~s~~~~i----l~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 352 RLSEEQYEAVRHVT--GSGDIAV----VVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCCHHHHHHHHHHh--cCCCEEE----EEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHh
Confidence 46999999999888 54 4556 899999999854 3333333322 36789999999887776654
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.74 Score=47.64 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=41.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL 270 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~ 270 (317)
+++|||+|||.+..-=.-...... +...-++|-+-| |.=+ .++++.+.+.+++.+..+.......+....+
T Consensus 190 lVGpnGvGKTTTiaKLA~~~~~~~-----G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~ 261 (767)
T PRK14723 190 LVGPTGVGKTTTTAKLAARCVARE-----GADQLALLTTDSFRIGA---LEQLRIYGRILGVPVHAVKDAADLRFALAAL 261 (767)
T ss_pred EECCCCCcHHHHHHHHHhhHHHHc-----CCCeEEEecCcccchHH---HHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence 899999999876543222221111 111223333333 2112 4566777776676655443222222222233
Q ss_pred cC---cEEECcHHH
Q psy10677 271 RI---LTSATNTSL 281 (317)
Q Consensus 271 ~~---ilv~TP~~l 281 (317)
+. |+|=||||.
T Consensus 262 ~~~D~VLIDTAGRs 275 (767)
T PRK14723 262 GDKHLVLIDTVGMS 275 (767)
T ss_pred cCCCEEEEeCCCCC
Confidence 32 799999964
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.69 Score=43.90 Aligned_cols=26 Identities=8% Similarity=-0.127 Sum_probs=18.8
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.+.+....|++ +.|+||+|||++-
T Consensus 34 ~~~~~~~~p~n~~----iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNII----IYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEE----EECCCCCCHhHHH
Confidence 3455534445688 9999999999764
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.23 Score=51.02 Aligned_cols=88 Identities=9% Similarity=-0.032 Sum_probs=59.3
Q ss_pred CCCCccc--------eeecC-cccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCcee
Q psy10677 59 GHYPKSV--------RFVLG-TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITL 125 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~ 125 (317)
|||++++ +|++| .+++||+ ++|+|+ .+.+.++++..|... ...++++.+|..+..-
T Consensus 521 I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDl------P~a~vvI~~s~~~gS-----~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 521 IYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDL------PEANVLIQISSHYGS-----RRQEAQRLGRILRAKK 589 (732)
T ss_pred EECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCC------CCCCEEEEeCCCCCC-----HHHHHHHhcccccCCC
Confidence 8999998 99875 7899988 889999 899999888866321 3688999998888765
Q ss_pred ecCC--CCCCcccc-----cCCCCChhhhcccCcCCCCC
Q psy10677 126 IGQN--IPKPVKTL-----DETNIPSYILGPMKPKTTNN 157 (317)
Q Consensus 126 ~g~~--~~~~~~~f-----~~~~l~~~l~~~l~~~g~~~ 157 (317)
.|.. ..--+-++ .|+.++..=++.|.+.||..
T Consensus 590 ~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~ 628 (732)
T TIGR00603 590 GSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSF 628 (732)
T ss_pred CCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCee
Confidence 5442 01011112 22345555555666667653
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.45 Score=47.95 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=21.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+++++ ++|+||||||. ++-.++.++..
T Consensus 256 ~~~~IL----IsG~TGSGKTT-ll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGIL----IAGAPGAGKST-FAQALAEFYAD 283 (602)
T ss_pred cCCEEE----EECCCCCCHHH-HHHHHHHHHhh
Confidence 567899 99999999996 44566777654
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.19 Score=50.55 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHH
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKE 120 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~ 120 (317)
+||.|+. +|++|+.+|||| --|+|+ .+.+..+.++ .+...-++.|.+|-+
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdV------PnATvMVIe~------AERFGLaQLHQLRGR 574 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDV------PNATVMVIEN------AERFGLAQLHQLRGR 574 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccC------CCCeEEEEec------hhhhhHHHHHHhccc
Confidence 9999995 999999999999 789998 6666554332 233446788888733
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.17 Score=35.80 Aligned_cols=38 Identities=26% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||++++ .|++|...+|++ +.|+|+ .+...+..++.+.
T Consensus 17 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~------~~~~~vi~~~~~~ 66 (82)
T smart00490 17 LHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDL------PGVDLVIIYDLPW 66 (82)
T ss_pred EECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcCh------hcCCEEEEeCCCC
Confidence 7887776 799999999998 899999 6667776666543
|
|
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.47 Score=45.72 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=34.3
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
+|.-. ..++++ +.|+||||||.. +-.++..+... +..++|+=|..|+....
T Consensus 36 ~~~~~--~~~h~~----i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKDA--EEAHTM----IIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcch--hhccEE----EEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHhh
Confidence 44555 667888 999999999975 44555555542 34677777777665433
|
TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria. |
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.33 Score=49.67 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=36.4
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
..+++ ++||||||||.+|++|-+... .-.++|+=|--|+........++
T Consensus 139 ~~hvl----viApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 139 QPHSL----VVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred CceEE----EEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHh
Confidence 34788 999999999999999987542 12577777877777666555544
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.24 Score=51.74 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=53.0
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCC--------ccc--------eeecCcccceec----ccccCCcCCCCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYP--------KSV--------RFVLGTAGFLLS----AVSFSLPFRDDK 89 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~--------~~q--------~F~~g~~~iLva----arg~~~~lr~~~ 89 (317)
....++|..++-.+.|.+.|. +||. |+| +|++|+.++||| ++|+|+
T Consensus 366 ~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi------ 439 (773)
T PRK13766 366 SRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI------ 439 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc------
Confidence 345667776666666666663 5654 776 899999999999 899999
Q ss_pred CcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 90 TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 90 ~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
.+...+++|+.+... ...+++.++..+
T Consensus 440 ~~~~~VI~yd~~~s~------~r~iQR~GR~gR 466 (773)
T PRK13766 440 PSVDLVIFYEPVPSE------IRSIQRKGRTGR 466 (773)
T ss_pred ccCCEEEEeCCCCCH------HHHHHHhcccCc
Confidence 788899999876533 356676655544
|
|
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.79 Score=43.82 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..++++ +.|.||||||. ++-+++..+... +-+++|.=|..+.....++
T Consensus 14 e~~~~l----i~G~~GsGKT~-~i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 14 ENRHIL----IIGATGSGKTQ-AIRHLLDQIRAR-------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGG-EE----EEE-TTSSHHH-HHHHHHHHHHHT-------T-EEEEEEETTHHHHHH--
T ss_pred hhCcEE----EECCCCCCHHH-HHHHHHHHHHHc-------CCEEEEEECCchHHHHhcC
Confidence 778899 99999999996 556888887664 4578888888777655554
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.1 Score=42.76 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=44.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC-c-HHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP-T-RELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P-t-reLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.++-+. +++|+|+|||....--.. .+... +.++.+++- | |.=| .++++.+.+.+++.+.....
T Consensus 205 ~~~ii~----lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~~~d 269 (407)
T PRK12726 205 NHRIIS----LIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGA---VEQFQGYADKLDVELIVATS 269 (407)
T ss_pred CCeEEE----EECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccH---HHHHHHHhhcCCCCEEecCC
Confidence 566677 999999999975433222 23222 233433332 2 3222 34566677766765543321
Q ss_pred CCCHHHHHHHc------cCcEEECcHHH
Q psy10677 260 GTSKMYQVILL------RILTSATNTSL 281 (317)
Q Consensus 260 g~~~~~~~~~~------~~ilv~TP~~l 281 (317)
..+.......+ ..|+|=|||+.
T Consensus 270 p~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 270 PAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 11111111222 12899999994
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.27 Score=41.84 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=24.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++-|...+...+. .|..++ +++|||||||...
T Consensus 11 ~~~~~~~l~~~v~-~g~~i~----I~G~tGSGKTTll 42 (186)
T cd01130 11 SPLQAAYLWLAVE-ARKNIL----ISGGTGSGKTTLL 42 (186)
T ss_pred CHHHHHHHHHHHh-CCCEEE----EECCCCCCHHHHH
Confidence 5556666655553 788999 9999999999754
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.24 Score=45.64 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+-.|++ ..+|||||||+-.
T Consensus 96 ~KSNIL----LiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNIL----LIGPTGSGKTLLA 114 (408)
T ss_pred eeccEE----EECCCCCcHHHHH
Confidence 556888 9999999999743
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.87 Score=40.31 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=36.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-.+--+.+.+. .+-.+++++ +.|-..|+.+.+..+.
T Consensus 20 ~gs~~l----I~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVL----LSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEE----EEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 566777 9999999999744333333332 245677776 6677778888777664
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=87.78 E-value=2 Score=46.08 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=71.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH-HHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ-VILL 270 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-~~~~ 270 (317)
+.-+-|-|||.- .|.+|.|+-+.+ ++-.--||++||..+. .-.-++++|+. ++++...||....... ..-+
T Consensus 639 LADEmGLGKTIQ-tISllAhLACee----gnWGPHLIVVpTsviL-nWEMElKRwcP--glKILTYyGs~kErkeKRqgW 710 (1958)
T KOG0391|consen 639 LADEMGLGKTIQ-TISLLAHLACEE----GNWGPHLIVVPTSVIL-NWEMELKRWCP--GLKILTYYGSHKERKEKRQGW 710 (1958)
T ss_pred ehhhhcccchhH-HHHHHHHHHhcc----cCCCCceEEeechhhh-hhhHHHhhhCC--cceEeeecCCHHHHHHHhhcc
Confidence 667889999964 567888887753 3333457778997654 34566788887 6899999987553322 2223
Q ss_pred cC-----cEEECcHHHH---HHHhcCCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 271 RI-----LTSATNTSLG---IYLQQNDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 271 ~~-----ilv~TP~~l~---~~l~~~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+ ++|+.=..+. ..++++.-.+++||||.++-. |....-|
T Consensus 711 ~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn---fksqrWQ 758 (1958)
T KOG0391|consen 711 AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN---FKSQRWQ 758 (1958)
T ss_pred cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc---hhHHHHH
Confidence 22 4554443332 356778889999999987543 5444433
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.5 Score=39.34 Aligned_cols=56 Identities=7% Similarity=-0.075 Sum_probs=31.2
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
--+. .|.-++ +.|++|+|||.- ++-++.++... .+-.++++. +.+-..++...+..
T Consensus 25 gG~~--~g~~~~----i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS-~E~~~~~~~~r~~~ 80 (271)
T cd01122 25 KGLR--KGELII----LTAGTGVGKTTF-LREYALDLITQ------HGVRVGTIS-LEEPVVRTARRLLG 80 (271)
T ss_pred EEEc--CCcEEE----EEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEE-cccCHHHHHHHHHH
Confidence 3445 777788 999999999953 33333333221 245666665 33333444444433
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.2 Score=39.87 Aligned_cols=47 Identities=6% Similarity=0.133 Sum_probs=30.4
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..+++ +.|++|+|||... ..+...+... +.. ++.++..+|..++...
T Consensus 101 ~~~l~----l~G~~GtGKThLa-~AIa~~l~~~-------g~~-v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFV----FSGKPGTGKNHLA-AAIGNRLLAK-------GRS-VIVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEE----EECCCCCCHHHHH-HHHHHHHHHc-------CCC-eEEEEHHHHHHHHHHH
Confidence 35678 9999999999532 3344455432 333 3555777888877654
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.48 Score=44.38 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+.+++ ++|+||||||. ++-.++..+..
T Consensus 159 ~~~nil----i~G~tgSGKTT-ll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNII----ISGGTSTGKTT-FTNAALREIPA 186 (332)
T ss_pred cCCcEE----EECCCCCCHHH-HHHHHHhhCCC
Confidence 788999 99999999995 44555665543
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.2 Score=45.70 Aligned_cols=132 Identities=16% Similarity=-0.009 Sum_probs=73.1
Q ss_pred CCCCCCcCCCCCCCCchhhhhcccccc--ccCcCcccccceeccCCChhHH---HHHHHHHHHHHcCCCCCCCCCceEEE
Q psy10677 154 TTNNENNHNKNKKCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVF---TYILPALYHILKMPKLEEGDGPIALV 228 (317)
Q Consensus 154 g~~~p~~~~~~~~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTl---a~~lp~l~~l~~~~~~~~~~~~~ali 228 (317)
||..| ..-..+|.+.|..++.-+.. .++..-| +.-.-|=|||. +|+-. |++-.+ -.-.|||
T Consensus 195 ~~~vP--g~I~~~Lf~yQreGV~WL~~L~~q~~GGI----LgDeMGLGKTIQiisFLaa-L~~S~k-------~~~paLI 260 (923)
T KOG0387|consen 195 GFKVP--GFIWSKLFPYQREGVQWLWELYCQRAGGI----LGDEMGLGKTIQIISFLAA-LHHSGK-------LTKPALI 260 (923)
T ss_pred ccccc--HHHHHHhhHHHHHHHHHHHHHHhccCCCe----ecccccCccchhHHHHHHH-Hhhccc-------ccCceEE
Confidence 45555 22234778899988866653 1344445 56688999996 34333 332211 1247999
Q ss_pred EcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH------------HHHHHHccC----cEEECcHHHHH---HHhcCC
Q psy10677 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK------------MYQVILLRI----LTSATNTSLGI---YLQQND 289 (317)
Q Consensus 229 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~------------~~~~~~~~~----ilv~TP~~l~~---~l~~~~ 289 (317)
+||.- +..|-.+++..|.. .+++..++|..+. +.+...... |+|+|=..+-- -+....
T Consensus 261 VCP~T-ii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~ 337 (923)
T KOG0387|consen 261 VCPAT-IIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGIL 337 (923)
T ss_pred EccHH-HHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCccccccc
Confidence 99964 44455555665554 5788888875552 111111111 45555433321 133345
Q ss_pred CCCCCCchhHHHh
Q psy10677 290 AHSPCLSVWRRLQ 302 (317)
Q Consensus 290 ~~~~~lde~d~l~ 302 (317)
-.+.+|||.+++-
T Consensus 338 W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 338 WDYVILDEGHRIR 350 (923)
T ss_pred ccEEEecCccccc
Confidence 5678888877654
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.63 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=19.5
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
-.++ ++|++||||| .|++-++..+..
T Consensus 14 fr~v----iIG~sGSGKT-~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMV----IIGKSGSGKT-TLIKSLLYYLRH 39 (241)
T ss_pred ceEE----EECCCCCCHH-HHHHHHHHhhcc
Confidence 3667 8999999999 566677766543
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=87.32 E-value=0.43 Score=43.12 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=22.8
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
|.+.+-.++...+.-++ ++++||||||... -.++..+.
T Consensus 68 ~~~~l~~~~~~~~Glil----isG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 68 NLEIFRKLLEKPHGIIL----VTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred HHHHHHHHHhcCCCEEE----EECCCCCcHHHHH-HHHHhhhC
Confidence 44444333311333577 9999999999654 44556554
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.53 Score=42.39 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=22.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.+.+++ ++|+||||||... -.++..+...
T Consensus 126 ~~~~il----i~G~tGSGKTT~l-~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNIL----ISGPTGSGKTTLL-NALLEEIPPE 154 (270)
T ss_dssp TTEEEE----EEESTTSSHHHHH-HHHHHHCHTT
T ss_pred cceEEE----EECCCccccchHH-HHHhhhcccc
Confidence 578999 9999999999654 5666666553
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=87.12 E-value=2.4 Score=41.13 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=43.2
Q ss_pred eeccCCChhHHHH-HHHHHHHHHcCCCCCCCCCceEEEEcC--cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH---
Q psy10677 192 KKAEVQSRSVFTY-ILPALYHILKMPKLEEGDGPIALVLAP--TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY--- 265 (317)
Q Consensus 192 ~~a~tGsGKTla~-~lp~l~~l~~~~~~~~~~~~~alil~P--treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~--- 265 (317)
++|++|+|||.+. -|.. .+.+ .|-++++++. -|.-|. .+++.++...++.+...+++.+...
T Consensus 105 lvG~~GvGKTTtaaKLA~--~l~~-------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~~ 172 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAY--YYQR-------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIAS 172 (429)
T ss_pred EECCCCCCHHHHHHHHHH--HHHH-------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHHH
Confidence 8999999998643 3332 2322 1335555443 254443 4455556556666665555444211
Q ss_pred -HHHHc-----cCcEEECcHHHH
Q psy10677 266 -QVILL-----RILTSATNTSLG 282 (317)
Q Consensus 266 -~~~~~-----~~ilv~TP~~l~ 282 (317)
..... ..|+|=||||+.
T Consensus 173 ~~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 173 EGVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred HHHHHHHhCCCCEEEEECCCCCc
Confidence 12222 128999999984
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=2.3 Score=41.33 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=40.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-C-cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH-
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-P-TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI- 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-P-treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~- 268 (317)
+++++|||||.+..- +..++... .+-++++++ = .|.-|. ++++.++...++.+.....+.+...-..
T Consensus 105 ~vG~~GsGKTTtaak-LA~~l~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 105 MVGLQGAGKTTTAGK-LAKYLKKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred EECCCCCcHHHHHHH-HHHHHHHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 889999999975322 22233321 133444443 2 244332 3445555656666554422333222111
Q ss_pred Hc--------cCcEEECcHHHH
Q psy10677 269 LL--------RILTSATNTSLG 282 (317)
Q Consensus 269 ~~--------~~ilv~TP~~l~ 282 (317)
.+ ..|||=||||+.
T Consensus 175 a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHHhcCCCEEEEeCCCCcc
Confidence 11 117999999873
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=87.05 E-value=2.3 Score=43.24 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=65.1
Q ss_pred CCCchhhhhccccccc---cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCc---eEEEEcCcHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNF---QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGP---IALVLAPTRELAQQI 239 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~---~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~---~alil~PtreLa~Qi 239 (317)
++-|+|..++--+.-. .+..-| +.-.-|-|||+.-+--++..=... ..+++.++ ..||+||-+ |..|-
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGI----LaddmGLGKTlsmislil~qK~~~-~~~~~~~~~a~~TLII~PaS-li~qW 398 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGI----LADDMGLGKTLSMISLILHQKAAR-KAREKKGESASKTLIICPAS-LIHQW 398 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcc----cccccccccchHHHHHHHHHHHHH-HhhcccccccCCeEEeCcHH-HHHHH
Confidence 6788898888666521 122334 456778999986544444322111 11111221 489999964 56677
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHH
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTS 280 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~ 280 (317)
+.++..-...--+++.+.+|....+-....++. |||+|=.-
T Consensus 399 ~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~l 441 (901)
T KOG4439|consen 399 EAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNL 441 (901)
T ss_pred HHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeec
Confidence 777766655556888887776655555555655 77777533
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.97 E-value=8.9 Score=35.71 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=78.0
Q ss_pred CCCchhhhhccccccc--cCc---CcccccceeccCCChhHHHHHHHHHHHHHcCCCC-----------CCCCCceEEEE
Q psy10677 166 KCGDKESKNWTIPLNF--QAK---KFISVLQKKAEVQSRSVFTYILPALYHILKMPKL-----------EEGDGPIALVL 229 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~--~g~---dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~-----------~~~~~~~alil 229 (317)
+++|.|..+|..+..- +|+ -++ +.||.|+||+... .-+...+...... ..+..|-..++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~L----f~Gp~G~GK~~lA-~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i 78 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLL----ICGPEGLGKRAVA-LALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV 78 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEe----eECCCCCCHHHHH-HHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence 3488888888776521 222 466 8999999987532 2344455543211 12456878888
Q ss_pred --cCcH--------HHHHHHHHHHHHHhcC---CCcEEEEEECCCCHHH--HHHHccC----------cEEEC-cHHHHH
Q psy10677 230 --APTR--------ELAQQIQAVISIFSRT---MRIRHACLYGGTSKMY--QVILLRI----------LTSAT-NTSLGI 283 (317)
Q Consensus 230 --~Ptr--------eLa~Qi~~~~~~l~~~---~~~~~~~~~gg~~~~~--~~~~~~~----------ilv~T-P~~l~~ 283 (317)
.|.. --+.||.+..+.+... -+.|++.+........ ....++. |+++. |.+|+.
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 6753 2366776665555432 2567777765433222 2222222 46665 788888
Q ss_pred HHhcC--CCCCCCCc--hhHHHhhhcCCcHH
Q psy10677 284 YLQQN--DAHSPCLS--VWRRLQDILGLTEE 310 (317)
Q Consensus 284 ~l~~~--~~~~~~ld--e~d~l~~~~gf~~~ 310 (317)
-+.+. .+.+...+ |+-..+...|..++
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~ 189 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQGVSER 189 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHcCCChH
Confidence 77764 34444443 44444443455544
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=86.74 E-value=0.37 Score=37.41 Aligned_cols=18 Identities=6% Similarity=-0.130 Sum_probs=14.2
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +.||+|||||...
T Consensus 2 ~~~~~----l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVIL----IVGPPGSGKTTLA 19 (148)
T ss_pred CCEEE----EECCCCCcHHHHH
Confidence 34566 9999999999654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=86.41 E-value=0.35 Score=47.93 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=16.6
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
+|.+++ +++|+|+|||--
T Consensus 460 ~g~~LL----ItG~sG~GKtSL 477 (659)
T KOG0060|consen 460 SGQNLL----ITGPSGCGKTSL 477 (659)
T ss_pred CCCeEE----EECCCCCchhHH
Confidence 999999 999999999853
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=86.12 E-value=0.28 Score=48.34 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=22.4
Q ss_pred hhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 171 ESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 171 Q~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
|.+.+-.++. ... -++ ++||||||||... -.++..+.
T Consensus 230 ~~~~l~~~~~-~~~Glil----itGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 230 LLSRFERLIR-RPHGIIL----VTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHHHHHHHh-cCCCEEE----EEcCCCCCHHHHH-HHHHhccC
Confidence 4444444441 222 367 8999999999754 33466654
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK13876 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.59 Score=47.79 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=35.0
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
..+++ +.||||||||..+++|-|.... -.+||+=|-.|+.......-++
T Consensus 144 ~~hvL----viApTrSGKgvg~VIPnLL~~~----------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 144 PEHVL----CFAPTRSGKGVGLVVPTLLTWP----------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred CceEE----EEecCCCCcceeEehhhHHhCC----------CCEEEEeCcchHHHHHHHHHHh
Confidence 35777 9999999999999999876431 2566666777776655444333
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.96 Score=46.78 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=32.8
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+..+||+|||.||+=-|.+ |.+. -.-.+-+|+|||.+.-.-++...+.
T Consensus 79 I~METGTGKTy~Ylrtmfe-Lhk~-----YG~~KFIivVPs~AIkeGv~~~s~~ 126 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFE-LHKK-----YGLFKFIIVVPSLAIKEGVFLTSKE 126 (985)
T ss_pred EEEecCCCceeeHHHHHHH-HHHH-----hCceeEEEEeccHHHHhhhHHHHHH
Confidence 7799999999999766654 2221 1346899999997765554444433
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=85.83 E-value=1.5 Score=46.80 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=60.3
Q ss_pred Cchhhhhcccccc------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 168 t~iQ~~~ip~~l~------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
...|-.|+..+.. ..|--++ -.|.||||||+|=. -|+.-|.. +..|.+..|-.-.|-|-.|..+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~v----NMASTGcGKT~aNA-RImyaLsd-----~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGV----NMASTGCGKTLANA-RAMYALRD-----DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEE----EecCCCcchHHHHH-HHHHHhCC-----CCCCceEEEEccccceeccchH
Confidence 6678888766653 2344566 67999999999853 22223322 2457788888899999999999
Q ss_pred HHHHHhcCCCcEEEEEECCCC
Q psy10677 242 VISIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~ 262 (317)
.+++-+.--+=..++++||..
T Consensus 480 a~r~rL~L~~ddLAVlIGs~A 500 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTA 500 (1110)
T ss_pred HHHHhcCCCccceEEEECHHH
Confidence 999877655566778888744
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.4 Score=40.03 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=30.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++++ +.||+|+|||.-.. .+...+... | ..++..+..+|..++..
T Consensus 105 ~~~nll----l~Gp~GtGKTHLa~-Aia~~a~~~-------g-~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGANLL----LFGPPGGGKSHLAA-AIGLALIEN-------G-WRVLFTRTTDLVQKLQV 151 (269)
T ss_pred cCceEE----EEecCCCcHHHHHH-HHHHHHHHc-------C-CceeeeeHHHHHHHHHH
Confidence 778899 99999999995332 333333332 3 33455577888887744
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=85.55 E-value=4.7 Score=36.60 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=40.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH-H
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV-I 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~-~ 268 (317)
+++++|+|||....--. ..+.+ .+.+++++. +.|.-+ .+++..+....++.+.....+.+..... .
T Consensus 77 l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred EECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 78999999997543222 22322 234555554 234433 2345555555565544332232222111 1
Q ss_pred ----H----ccCcEEECcHHHH
Q psy10677 269 ----L----LRILTSATNTSLG 282 (317)
Q Consensus 269 ----~----~~~ilv~TP~~l~ 282 (317)
. ...++|=|||++.
T Consensus 146 ~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHCCCCEEEEeCCCCCc
Confidence 1 1118999999974
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=85.51 E-value=1.3 Score=42.02 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=47.6
Q ss_pred CCchhhhhccccc----cccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH--H
Q psy10677 167 CGDKESKNWTIPL----NFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI--Q 240 (317)
Q Consensus 167 ~t~iQ~~~ip~~l----~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi--~ 240 (317)
|++=|..++-.++ +.+|..+. +.|+-|+|||.. +-.+....+. .+..+++++||.--|..+ .
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~f----v~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFF----VTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEE----EEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhccCC
Confidence 5677888876661 12888999 999999999854 4444443332 357899999998888777 4
Q ss_pred HHHHHHh
Q psy10677 241 AVISIFS 247 (317)
Q Consensus 241 ~~~~~l~ 247 (317)
..+..+.
T Consensus 70 ~T~hs~f 76 (364)
T PF05970_consen 70 RTIHSFF 76 (364)
T ss_pred cchHHhc
Confidence 4444443
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.34 E-value=0.35 Score=47.05 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.6
Q ss_pred CCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCC
Q psy10677 61 YPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDP 101 (317)
Q Consensus 61 g~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p 101 (317)
.+|+| +||+|..++||| --|+|| .+.+.++-|+.-
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI------p~vDlVifYEpv 453 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI------PEVDLVIFYEPV 453 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCC------CcccEEEEecCC
Confidence 56888 999999999999 678999 788888877643
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=0.56 Score=45.91 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=24.7
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
|.+.+..++...+--++ ++||||||||... ..++..+..
T Consensus 206 ~~~~l~~~~~~~~GliL----vtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 206 QLAQFRQALQQPQGLIL----VTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred HHHHHHHHHHhcCCeEE----EECCCCCChHHHH-HHHHHhhCC
Confidence 44445444421334567 8999999999764 456676643
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=85.24 E-value=1.4 Score=39.62 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=28.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+.+++ +.||+|+|||....-- ...+... |-.+++ ....+|..++.
T Consensus 97 ~~~nll----l~Gp~GtGKThLa~al-~~~a~~~-------g~~v~f-~t~~~l~~~l~ 142 (254)
T PRK06526 97 GKENVV----FLGPPGTGKTHLAIGL-GIRACQA-------GHRVLF-ATAAQWVARLA 142 (254)
T ss_pred cCceEE----EEeCCCCchHHHHHHH-HHHHHHC-------CCchhh-hhHHHHHHHHH
Confidence 778999 9999999999754332 2333221 333433 45556666664
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.10 E-value=0.76 Score=42.86 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=36.0
Q ss_pred CchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
++-|...+-.+. .++ |++ +++.||||||... =.++..+.. .-+++.+=-|.||-.+.
T Consensus 159 ~~~~a~~L~~av--~~r~NIL----isGGTGSGKTTlL-Nal~~~i~~--------~eRvItiEDtaELql~~ 216 (355)
T COG4962 159 IRRAAKFLRRAV--GIRCNIL----ISGGTGSGKTTLL-NALSGFIDS--------DERVITIEDTAELQLAH 216 (355)
T ss_pred CHHHHHHHHHHH--hhceeEE----EeCCCCCCHHHHH-HHHHhcCCC--------cccEEEEeehhhhccCC
Confidence 778888877777 555 999 9999999999531 111212211 12666666666665444
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=85.07 E-value=1.6 Score=38.54 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=31.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.+++|+|||...+ -++..+.+ .+..+++++ +.+-..+..+.+..+.
T Consensus 23 ~g~~~~----i~G~~G~GKTtl~~-~~~~~~~~-------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLIL----IEGDESTGKSILSQ-RLAYGFLQ-------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEE----EECCCCCCHHHHHH-HHHHHHHh-------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 566777 99999999996532 22333332 245667776 4444455555555443
|
|
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=84.75 E-value=0.72 Score=46.84 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=36.7
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
..++ +.||||||||..+++|-+-. . +--++|+=|-.|++......-++.+
T Consensus 212 ~H~l----v~ApTgsGKgvg~VIPnLL~---~-------~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMI----FFAGSGGFKTTSVVVPTALK---Y-------GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEE----EEeCCCCCccceeehhhhhc---C-------CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 5778 99999999999999997532 1 2257777788888776665544443
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=84.74 E-value=0.6 Score=46.98 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=24.9
Q ss_pred hhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 170 KESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
-|.+.+-.++....--++ ++||||||||.+. ..++..+.
T Consensus 303 ~~~~~l~~~~~~~~Glil----v~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVL----VTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHHHHHHHHHhcCCeEE----EECCCCCCHHHHH-HHHHHhhC
Confidence 344455444421334567 8999999999764 55667664
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=84.56 E-value=0.67 Score=47.27 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=37.0
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
...++ +.||||||||..+++|-+-. . +.-++|+=|-.|++.......++.
T Consensus 224 ~~H~L----v~ApTgsGKt~g~VIPnLL~---~-------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGL----VFAGSGGFKTTSVVVPTALK---W-------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEE----EEeCCCCCccceEehhhhhc---C-------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 35677 99999999999999997632 1 235677778888887766655444
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=2.7 Score=40.93 Aligned_cols=80 Identities=10% Similarity=-0.087 Sum_probs=40.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-PT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ--- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~--- 266 (317)
+++++|+|||.+..-= ..++.+. +-++++++ .+ |.- ..++++.++...++.+.......+....
T Consensus 100 lvG~~GsGKTTtaakL-A~~L~~~-------g~kV~lV~~D~~R~a---a~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 100 LVGLQGSGKTTTAAKL-ARYFKKK-------GLKVGLVAADTYRPA---AYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred EECCCCCcHHHHHHHH-HHHHHHc-------CCeEEEecCCCCCHH---HHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 8999999999754322 2334332 23344333 33 332 2445555665556554332222222211
Q ss_pred -HHHcc--C-cEEECcHHHH
Q psy10677 267 -VILLR--I-LTSATNTSLG 282 (317)
Q Consensus 267 -~~~~~--~-ilv~TP~~l~ 282 (317)
..... . |||=||||+.
T Consensus 169 al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHHHhhcCCEEEEECCCccc
Confidence 11111 2 7999999886
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=84.30 E-value=0.54 Score=32.57 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|...+ +.+++|||||..+
T Consensus 22 ~g~~tl----i~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTL----ITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 455678 9999999999754
|
|
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=84.28 E-value=0.83 Score=43.65 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=58.4
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.|++.=|+|.|-+.+........ .....|. .+ +|++ ..+|+|+|||++.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTa-------NTK~h~a-----pf----RNil----fyGPPGTGKTm~A----------- 401 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATA-------NTKKHQA-----PF----RNIL----FYGPPGTGKTMFA----------- 401 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhc-------ccccccc-----hh----hhee----eeCCCCCCchHHH-----------
Confidence 36666688888777766533322 0011111 11 5666 9999999999654
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-CCCCCC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-DAHSPC 294 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-~~~~~~ 294 (317)
||| ....|+..++.+||.-..--... |+--..|.|+-+.. .--++.
T Consensus 402 -----------------rel-----------Ar~SGlDYA~mTGGDVAPlG~qa-----VTkiH~lFDWakkS~rGLllF 448 (630)
T KOG0742|consen 402 -----------------REL-----------ARHSGLDYAIMTGGDVAPLGAQA-----VTKIHKLFDWAKKSRRGLLLF 448 (630)
T ss_pred -----------------HHH-----------HhhcCCceehhcCCCccccchHH-----HHHHHHHHHHHhhcccceEEE
Confidence 122 23457788888887543322222 12223445554443 333567
Q ss_pred CchhHHHhh
Q psy10677 295 LSVWRRLQD 303 (317)
Q Consensus 295 lde~d~l~~ 303 (317)
+||||-.|.
T Consensus 449 IDEADAFLc 457 (630)
T KOG0742|consen 449 IDEADAFLC 457 (630)
T ss_pred ehhhHHHHH
Confidence 899998774
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=84.24 E-value=1.5 Score=46.01 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred CCchhhhhccccccccCcCc-ccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKF-ISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dv-i~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++.-|.+|+-.++ ..+|. + +.|=+|+|||.....- +.-|.. .|-++|..+-|..-+.-|.-.++.
T Consensus 670 LN~dQr~A~~k~L--~aedy~L----I~GMPGTGKTTtI~~L-IkiL~~-------~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 670 LNNDQRQALLKAL--AAEDYAL----ILGMPGTGKTTTISLL-IKILVA-------LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred cCHHHHHHHHHHH--hccchhe----eecCCCCCchhhHHHH-HHHHHH-------cCCeEEEEehhhHHHHHHHHHHhc
Confidence 3777999999999 66664 4 6799999999765432 222222 356888888888766555444333
Q ss_pred HhcCCCcEEEEE---------------ECCCCHHH---HHHHccC--cEEECcHHHH-HHHhcCCCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACL---------------YGGTSKMY---QVILLRI--LTSATNTSLG-IYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~---------------~gg~~~~~---~~~~~~~--ilv~TP~~l~-~~l~~~~~~~~~lde~d~l~~ 303 (317)
+ ++.+.-+ +.+++.+. -...+.. |+.||---+. -++.++.+++..+|||-.+.-
T Consensus 736 ~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 736 F----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred c----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEcccccccc
Confidence 3 3332222 22222111 1112222 5666653333 456677899999999977654
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=84.23 E-value=1.4 Score=37.88 Aligned_cols=21 Identities=14% Similarity=-0.073 Sum_probs=15.7
Q ss_pred eeccCCChhHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+++|||||||... -.++..+.
T Consensus 6 I~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 6 VTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EECCCCCCHHHHH-HHHHHHhh
Confidence 8999999999764 44555554
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.05 E-value=0.8 Score=44.78 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=26.0
Q ss_pred CchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 168 GDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
++.|.+.+-.+++ .... ++ ++||||||||.. +..++..+...
T Consensus 243 ~~~~~~~~~~~~~-~p~GliL----vTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLN-RPQGLIL----VTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHh-CCCeEEE----EeCCCCCCHHHH-HHHHHHHhcCC
Confidence 4445555555552 2222 44 899999999976 45667777654
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.98 E-value=0.65 Score=43.07 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.0
Q ss_pred Cchhhhh-ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 168 GDKESKN-WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 168 t~iQ~~~-ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
++.|..- |-.+- .+++++ ++++||||||. ++.+++..+-
T Consensus 129 ~~~~~ayL~~~ie--~~~sii----i~G~t~sGKTt-~lnall~~Ip 168 (312)
T COG0630 129 SPEQAAYLWLAIE--ARKSII----ICGGTASGKTT-LLNALLDFIP 168 (312)
T ss_pred CHHHHHHHHHHHH--cCCcEE----EECCCCCCHHH-HHHHHHHhCC
Confidence 4455443 44455 899999 99999999994 4555555554
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=83.86 E-value=4 Score=39.63 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=40.1
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-PT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ--- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~--- 266 (317)
+++++|||||....- +..++... .+-+++++. =| |.-| .++++.++...++.+.....+.+..+-
T Consensus 104 ~vG~~GsGKTTtaak-LA~~l~~~------~g~kV~lV~~D~~R~~a---~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 104 MVGLQGSGKTTTCGK-LAYYLKKK------QGKKVLLVACDLYRPAA---IEQLKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred EECCCCCcHHHHHHH-HHHHHHHh------CCCeEEEEeccccchHH---HHHHHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 899999999975422 22223211 123444443 32 3333 334455555556665544333333211
Q ss_pred -HHHc-----cCcEEECcHHH
Q psy10677 267 -VILL-----RILTSATNTSL 281 (317)
Q Consensus 267 -~~~~-----~~ilv~TP~~l 281 (317)
.... ..|||=||||+
T Consensus 174 al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCcc
Confidence 1111 12899999986
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=0.63 Score=48.38 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=38.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCC-CHHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGK-TKEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~-~~~~i~~~~~~~ 121 (317)
+||+|++ .|++|.++|||| |+|+|+ .....++. |+... . ...+ ..+.++..++.+
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gvnl------Pa~~VVI~~~~~yd~~~-g-~~~~s~~~y~Qm~GRAG 380 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNL------PARRVIIRDYRRYDGGA-G-MQPIPVLEYHQMAGRAG 380 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCC------CceEEEEecceeecCCC-C-ceeCCHHHHHHHhhcCC
Confidence 6999998 999999999999 999999 44443332 33111 1 0111 256777777776
Q ss_pred Cce
Q psy10677 122 NIT 124 (317)
Q Consensus 122 ~i~ 124 (317)
+..
T Consensus 381 R~g 383 (737)
T PRK02362 381 RPG 383 (737)
T ss_pred CCC
Confidence 644
|
|
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=83.81 E-value=0.73 Score=47.03 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=35.9
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
...++ +.||||||||..+++|-|... +..+||+=|-.|+.......
T Consensus 175 ~~Hvl----viapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 175 PEHVL----TYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGW 220 (636)
T ss_pred CceEE----EEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHH
Confidence 35788 999999999999999998531 33688888989987655444
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=5.6 Score=36.99 Aligned_cols=19 Identities=5% Similarity=-0.167 Sum_probs=14.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.=+. ++||+|+|||...
T Consensus 113 ~~~vi~----lvGpnGsGKTTt~ 131 (318)
T PRK10416 113 KPFVIL----VVGVNGVGKTTTI 131 (318)
T ss_pred CCeEEE----EECCCCCcHHHHH
Confidence 344455 8899999999653
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=83.10 E-value=1.4 Score=43.60 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=40.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
-+|||.||||.-. |+++... -.+++--|.|-||..|++.+.+. |+.+-+++|.
T Consensus 196 H~GPTNSGKTy~A----Lqrl~~a--------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGe 248 (700)
T KOG0953|consen 196 HVGPTNSGKTYRA----LQRLKSA--------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGE 248 (700)
T ss_pred EeCCCCCchhHHH----HHHHhhh--------ccceecchHHHHHHHHHHHhhhc----CCCccccccc
Confidence 7899999999654 6777653 35677889999999999988775 4555555553
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=83.01 E-value=2.3 Score=39.71 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=31.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+.+++ +.|+||+|||.- +..+...+... +-.+ +..+..+|..++..
T Consensus 182 ~~~~Ll----l~G~~GtGKThL-a~aIa~~l~~~-------g~~V-~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLL----FYGNTGTGKTFL-SNCIAKELLDR-------GKSV-IYRTADELIEILRE 228 (329)
T ss_pred cCCcEE----EECCCCCcHHHH-HHHHHHHHHHC-------CCeE-EEEEHHHHHHHHHH
Confidence 457888 999999999973 33455555532 3344 44567788777654
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=82.90 E-value=2.6 Score=43.86 Aligned_cols=78 Identities=9% Similarity=-0.025 Sum_probs=49.8
Q ss_pred Cchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC-----------C-----CCC---------
Q psy10677 168 GDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP-----------K-----LEE--------- 220 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~-----------~-----~~~--------- 220 (317)
++.|...+..++. +.+.+.+ +.+|||+|||++.+-..|......+ + ...
T Consensus 23 Y~~Q~a~M~rvl~~L~~~q~~l----lESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~ 98 (945)
T KOG1132|consen 23 YPTQLAFMTRVLSCLDRKQNGL----LESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSE 98 (945)
T ss_pred chHHHHHHHHHHHHHHHhhhhh----ccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchh
Confidence 8899877665551 1556777 8999999999998877665443211 0 000
Q ss_pred ---------CCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 221 ---------GDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 221 ---------~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
-.-|+..+-.-|..=..|+.+++++....
T Consensus 99 e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 99 EAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01367777777776666776766665543
|
|
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=82.84 E-value=2.9 Score=42.68 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHHhcC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR--ELAQQIQAVISIFSRT 249 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr--eLa~Qi~~~~~~l~~~ 249 (317)
...+++ +.|+||||||..+. .++....+. +..++++=|-. +|...++..++..+..
T Consensus 175 ~~~H~l----v~G~TGsGKT~l~~-~l~~q~i~~-------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTL----VLGTTGVGKTRLAE-LLITQDIRR-------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEE----EECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 445677 99999999997764 444444432 45667777764 4888888888877654
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=82.66 E-value=1 Score=39.92 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=18.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcC
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+++|+||||| +|+..+.+.+...
T Consensus 7 VIGPPgSGKs-TYc~g~~~fls~~ 29 (290)
T KOG1533|consen 7 VIGPPGSGKS-TYCNGMSQFLSAI 29 (290)
T ss_pred EEcCCCCCcc-chhhhHHHHHHHh
Confidence 7899999999 6777776666543
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=2.3 Score=47.64 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCCchhhhhccccccccC--cCcccccceeccCCChhHHHH--HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTY--ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~--~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.||+-|.+|+-.++ .. +-++ +.+..|+|||... ++.++..+.. ..+..++.++||..-|..+.
T Consensus 835 ~Lt~~Qr~Av~~iL--ts~dr~~~----IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMIL--ETSDRFTV----VQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHH--hCCCceEE----EEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 56999999999998 55 5566 8899999999763 3344443322 24577888999987666543
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=3.2 Score=37.50 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=30.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.+.+++ +.|++|+|||... ..+...+... .+..+++ ++..++..++...+
T Consensus 116 ~~~~l~----l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y-~~~~~l~~~l~~~~ 165 (266)
T PRK06921 116 RKNSIA----LLGQPGSGKTHLL-TAAANELMRK------KGVPVLY-FPFVEGFGDLKDDF 165 (266)
T ss_pred CCCeEE----EECCCCCcHHHHH-HHHHHHHhhh------cCceEEE-EEHHHHHHHHHHHH
Confidence 466788 9999999999533 3445555432 1444555 45667766665443
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.12 E-value=2.3 Score=37.97 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=34.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-.+--+.+.+.+ +-.+++++ +.|-..++.+.++.+.
T Consensus 22 ~gs~il----i~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVL----LSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEE----EEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 566777 99999999985332223333322 44566665 6677777777777764
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=81.82 E-value=0.47 Score=36.95 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=38.3
Q ss_pred EEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCC
Q psy10677 40 FVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP 99 (317)
Q Consensus 40 ~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~ 99 (317)
.+++++..+-.+.+...+. +||+++. +|++|...+|++ ++|+|+ .....+..++
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~------~~~~~vi~~~ 104 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDL------PNVSVVINYD 104 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcCh------hhCCEEEEeC
Confidence 3455555443444444432 8999876 899999999999 899998 5566666555
Q ss_pred CCC
Q psy10677 100 DPS 102 (317)
Q Consensus 100 ~p~ 102 (317)
.+.
T Consensus 105 ~~~ 107 (131)
T cd00079 105 LPW 107 (131)
T ss_pred CCC
Confidence 543
|
|
| >TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family | Back alignment and domain information |
|---|
Probab=81.67 E-value=4.7 Score=41.05 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHHhcC
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR--ELAQQIQAVISIFSRT 249 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr--eLa~Qi~~~~~~l~~~ 249 (317)
...+ +.|+||+|||..+.+=+.+.+.. +..++++=|-. ++...++..++..++.
T Consensus 181 gHtl----V~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 181 GHTL----VLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred CceE----EECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 4566 89999999999887755555532 45778888874 8899999999998873
|
Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=81.66 E-value=8.2 Score=31.96 Aligned_cols=13 Identities=8% Similarity=-0.314 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.+++|+|||...
T Consensus 5 ~~G~~G~GKTt~~ 17 (173)
T cd03115 5 LVGLQGVGKTTTA 17 (173)
T ss_pred EECCCCCCHHHHH
Confidence 7899999999764
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD | Back alignment and domain information |
|---|
Probab=81.59 E-value=1.2 Score=44.75 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..++++ +.|+||||||. ++-.++..+.+
T Consensus 175 e~~h~l----i~G~tGsGKs~-~i~~ll~~~~~ 202 (566)
T TIGR02759 175 ETQHIL----IHGTTGSGKSV-AIRKLLRWIRQ 202 (566)
T ss_pred cccceE----EEcCCCCCHHH-HHHHHHHHHHh
Confidence 667888 99999999995 44556666544
|
The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM). |
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.40 E-value=2.3 Score=38.10 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=36.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
.|+.++ +.+++|||||.- .+=.+....+ .|-.++++ .+.|...++.+.+..+.-
T Consensus 22 ~g~~~l----I~G~pGsGKT~f-~~qfl~~~~~-------~ge~vlyv-s~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVL----ITGPPGTGKTIF-ALQFLYEGAR-------EGEPVLYV-STEESPEELLENARSFGW 75 (260)
T ss_pred CCcEEE----EEcCCCCcHHHH-HHHHHHHHHh-------cCCcEEEE-EecCCHHHHHHHHHHcCC
Confidence 677888 999999999953 3333333222 13345554 678888888888887654
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=6 Score=38.60 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=52.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.-++ +.+++|+|||.- ++-+...+.+ .+-+++++. +.|-..|+...++.+.-.. .-..+....
T Consensus 79 ~Gs~~l----I~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs-~Ees~~qi~~ra~rlg~~~--~~l~~~~e~ 143 (446)
T PRK11823 79 PGSVVL----IGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVS-GEESASQIKLRAERLGLPS--DNLYLLAET 143 (446)
T ss_pred CCEEEE----EECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEE-ccccHHHHHHHHHHcCCCh--hcEEEeCCC
Confidence 355566 899999999963 3333333332 244677765 5667778877766654321 111122222
Q ss_pred CHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhh
Q psy10677 262 SKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~ 303 (317)
+ -..+.+.++....++.++|+...+..
T Consensus 144 ~---------------l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 144 N---------------LEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred C---------------HHHHHHHHHhhCCCEEEEechhhhcc
Confidence 2 23444556666777778887766543
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=81.04 E-value=2.3 Score=39.95 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=19.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.+..++ ++||||||||... -.++..+.
T Consensus 121 ~~g~il----i~G~tGSGKTT~l-~al~~~i~ 147 (343)
T TIGR01420 121 PRGLIL----VTGPTGSGKSTTL-ASMIDYIN 147 (343)
T ss_pred cCcEEE----EECCCCCCHHHHH-HHHHHhhC
Confidence 445677 9999999999654 34555554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=80.89 E-value=5.8 Score=37.22 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=40.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc--HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH-HH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT--RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ-VI 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt--reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-~~ 268 (317)
++|++|+|||.+..--+ ..+.. .+..++++... |.-+. ++++.+...+++.+.....|.+.... ..
T Consensus 145 ~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~---eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAI---EQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred EEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHH---HHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 89999999997543222 23332 23455555432 33332 22344445556655443333332211 11
Q ss_pred -----Hcc---CcEEECcHHHH
Q psy10677 269 -----LLR---ILTSATNTSLG 282 (317)
Q Consensus 269 -----~~~---~ilv~TP~~l~ 282 (317)
... -|+|=|+|++.
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccC
Confidence 111 17999999983
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=80.78 E-value=2.7 Score=37.38 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=37.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
||... ...-+. .|.-++ +.|++|+|||.-- +=++....+ .|-.+++++ ..|=..|+.+.+..+
T Consensus 52 ~p~~~-l~GGl~--~Gsl~L----IaG~PG~GKT~la-lqfa~~~a~-------~Ge~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 52 TPAEE-LFSQLK--PGDLVL----LGARPGHGKTLLG-LELAVEAMK-------SGRTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred CCHHH-hcCCCC--CCCEEE----EEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEE-EeCCHHHHHHHHHHc
Confidence 66433 444555 777888 9999999999643 333333322 134566653 344456666666655
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.5 Score=34.17 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=17.4
Q ss_pred cceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 190 LQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 190 ~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+-+.|+.|+|||.. +--++..+...
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhc
Confidence 34899999999964 34555555554
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=80.53 E-value=3.8 Score=36.88 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=28.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|.+++ +.||+|+|||.-...-. ..+.. .|-.++++ +..+|..++.
T Consensus 101 ~~~~v~----l~Gp~GtGKThLa~al~-~~a~~-------~G~~v~~~-~~~~l~~~l~ 146 (259)
T PRK09183 101 RNENIV----LLGPSGVGKTHLAIALG-YEAVR-------AGIKVRFT-TAADLLLQLS 146 (259)
T ss_pred cCCeEE----EEeCCCCCHHHHHHHHH-HHHHH-------cCCeEEEE-eHHHHHHHHH
Confidence 788999 99999999996433222 22222 23445544 5567765543
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=80.45 E-value=7.8 Score=38.05 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred CCCchhhhhccccccccCcC-----cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKK-----FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~d-----vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+-|.|.+.+--+. +..+ -+ ..-+-|.|||.--+--++..+ .+...||++|+-+|. |-.
T Consensus 184 ~LL~fQkE~l~Wl~--~QE~Ss~~GGi----LADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~ 247 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLT--SQEESSVAGGI----LADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWK 247 (791)
T ss_pred cchhhhHHHHHHHH--Hhhhhhhccce----ehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHH
Confidence 35677776553332 2221 23 355789999976544333322 233499999998865 677
Q ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhc
Q psy10677 241 AVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQ 287 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~ 287 (317)
+++..+..+ .++ +.+|-|...+...+.+.+ ++.+|-..+..-..+
T Consensus 248 nEI~~~T~g-slk-v~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk 294 (791)
T KOG1002|consen 248 NEIERHTSG-SLK-VYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRK 294 (791)
T ss_pred HHHHHhccC-ceE-EEEEecccccCCHHHhhcCcEEEEecHHHHHHHHh
Confidence 778887773 344 555666666666666666 788887777665554
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=80.29 E-value=2.2 Score=37.16 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=32.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-.+=-+.+.+.+ .+-.+++++ +.|-..++.+.++.+.
T Consensus 18 ~gs~~l----i~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVL----ISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEE----EEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEE----EEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 567778 99999999996433333344443 034566665 5556677777776654
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK13700 conjugal transfer protein TraD; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=1.9 Score=44.35 Aligned_cols=72 Identities=8% Similarity=0.071 Sum_probs=44.3
Q ss_pred hhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q psy10677 144 SYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDG 223 (317)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~ 223 (317)
+.+.+.|++.|-..+ +.-..+|...+...++++ +.|-||||||.++ --+|..+.+. |
T Consensus 157 ~~l~k~lk~~~~~s~-----------i~I~gvPip~~~E~~H~l----i~GttGSGKS~~i-~~LL~~ir~R-------G 213 (732)
T PRK13700 157 KDVARMLKKDGKDSD-----------IRIGDLPIIRDSEIQNFC----LHGTVGAGKSEVI-RRLANYARQR-------G 213 (732)
T ss_pred HHHHHHHHhcCCCCC-----------eeEccccCCcchhhcceE----EeCCCCCCHHHHH-HHHHHHHHHc-------C
Confidence 556666776654434 433455554433788999 9999999999854 5566666543 3
Q ss_pred ceEEEEcCcHHHHHH
Q psy10677 224 PIALVLAPTRELAQQ 238 (317)
Q Consensus 224 ~~alil~PtreLa~Q 238 (317)
-+|+|.=|+.+....
T Consensus 214 drAIIyD~~GeFv~~ 228 (732)
T PRK13700 214 DMVVIYDRSGEFVKS 228 (732)
T ss_pred CeEEEEeCCCchHHH
Confidence 345555555554443
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.23 E-value=22 Score=33.24 Aligned_cols=124 Identities=12% Similarity=0.006 Sum_probs=68.7
Q ss_pred Cchhhhhcccccc--ccC---cCcccccceeccCCChhHHHHHHHHHHHHHcCCCC--------------CCCCCceEEE
Q psy10677 168 GDKESKNWTIPLN--FQA---KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL--------------EEGDGPIALV 228 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g---~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~--------------~~~~~~~ali 228 (317)
+|.|...|..+.+ .+| +-.+ +.||.|.||+... .-+...+....+. ..+.+|-..+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~L----f~G~~G~GK~~lA-~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALL----FKADSGLGTEQLI-RALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEE----eECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 5667666666552 122 3556 8999999998532 2333445543211 1234688888
Q ss_pred EcCc---HHHHHHHHHHHHHHhc---CCCcEEEEEECCCCHH--HHHHHccC----------cEEEC-cHHHHHHHhcC-
Q psy10677 229 LAPT---RELAQQIQAVISIFSR---TMRIRHACLYGGTSKM--YQVILLRI----------LTSAT-NTSLGIYLQQN- 288 (317)
Q Consensus 229 l~Pt---reLa~Qi~~~~~~l~~---~~~~~~~~~~gg~~~~--~~~~~~~~----------ilv~T-P~~l~~~l~~~- 288 (317)
+.|. .--+.||.+..+.+.. .-+.|++.+....... .+...++. |++++ |.+|+.-+.+.
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 8883 2246666665555432 2367888776543322 22222222 35544 77888776653
Q ss_pred -CCCCCCCc
Q psy10677 289 -DAHSPCLS 296 (317)
Q Consensus 289 -~~~~~~ld 296 (317)
.+.+..+.
T Consensus 159 ~~~~~~~~~ 167 (325)
T PRK06871 159 QTWLIHPPE 167 (325)
T ss_pred eEEeCCCCC
Confidence 55555554
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=80.22 E-value=5.2 Score=33.63 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=49.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC---CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE---EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~---~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
.|.=++ +.|++|+|||. +++-+..++....+.- ...+.+++++..- .-..++.+.+..+....
T Consensus 31 ~g~l~~----i~g~~g~GKT~-~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E-~~~~~~~~rl~~~~~~~-------- 96 (193)
T PF13481_consen 31 RGELTL----IAGPPGSGKTT-LALQLAAALATGRPFLGELPPRPGRVLYISLE-DSESQIARRLRALLQDY-------- 96 (193)
T ss_dssp TTSEEE----EEECSTSSHHH-HHHHHHHHHHT---TT---------EEEEESS-S-HHHHHHHHHHHHTTS--------
T ss_pred CCeEEE----EEeCCCCCHHH-HHHHHHHHHHhCCccCCcccccCceEEEEecc-CCHHHHHHHHHHHhccc--------
Confidence 455567 89999999995 4455555555322110 1134566666543 33667777777776543
Q ss_pred CCCCHHHHHHHcc-----CcEEE--------Cc---HHHHHHHhc-CCCCCCCCchhHHHhh
Q psy10677 259 GGTSKMYQVILLR-----ILTSA--------TN---TSLGIYLQQ-NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 259 gg~~~~~~~~~~~-----~ilv~--------TP---~~l~~~l~~-~~~~~~~lde~d~l~~ 303 (317)
+......... .+-+. ++ .++.+.+.. ...++.++|=+..+..
T Consensus 97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~ 155 (193)
T PF13481_consen 97 ---DDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHD 155 (193)
T ss_dssp ----HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--
T ss_pred ---CCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhc
Confidence 1111111110 11111 12 245667777 6788888886666655
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=80.13 E-value=0.92 Score=35.54 Aligned_cols=23 Identities=13% Similarity=-0.127 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCCCCCCchhHHHh
Q psy10677 280 SLGIYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 280 ~l~~~l~~~~~~~~~lde~d~l~ 302 (317)
.+.+.+......+.++||||.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHHHhcCCeEEEEeChHhcC
Confidence 46677777777889999999963
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 317 | ||||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 4e-23 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 4e-23 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 2e-06 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 4e-05 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 1e-04 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 2e-04 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 3e-04 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 5e-04 |
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-39
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 25/167 (14%)
Query: 110 TKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGD 169
T +E++++R+ IT+ G N PKPV E N P+ ++ +
Sbjct: 4 TAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIA------------------ 45
Query: 170 KESKNWTIPLNFQAKKFISVLQKK-----AEVQSRSVFTYILPALYHILKMPKLEEGDGP 224
+N+T P QA+ + L A+ S +Y+LPA+ HI P LE GDGP
Sbjct: 46 --RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103
Query: 225 IALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
I LVLAPTRELAQQ+Q V + + R R++ C+YGG K Q+ L
Sbjct: 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL 31
MWSATWP+E+++LA++FL D I +N+G+ L
Sbjct: 212 MWSATWPKEVRQLAEDFLKDYIHINIGALEL 242
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 7e-30
Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 29/185 (15%)
Query: 95 VPSYPDPSVNHLQGKTKEEIDSFRKEHNI--TLIGQNIPKPVKTLDETNIPSYILGPMKP 152
+P P + F K +NI + G ++P+P++ ++ I+
Sbjct: 14 IPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIII----- 68
Query: 153 KTTNNENNHNKN-KKCGDKESKNWTIPLNFQAKKFISVLQKK-----AEVQSRSVFTYIL 206
N K G + IP Q + + A+ S ++L
Sbjct: 69 ----------DNVNKSG------YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLL 112
Query: 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ 266
P L +L+ P E P ++++PTRELA QI F+ ++ +YGGTS +Q
Sbjct: 113 PILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ 172
Query: 267 VILLR 271
+
Sbjct: 173 NECIT 177
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 6e-20
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAK 52
M+SAT+P EIQ++A EFL + + + +G A ++KQ + ++Y K +K
Sbjct: 241 MFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSK 291
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 1e-24
Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 35/165 (21%)
Query: 112 EEIDSFRKEHNITLIGQNIPKPVKTLDET----NIPSYILGPMKPKTTNNENNHNKN-KK 166
+I+ R +H I + G ++P P+ T + I S +L +N
Sbjct: 2 MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLL---------------QNILD 46
Query: 167 CGDKESKNWTIPLNFQAKKFISVLQKK---AEVQSRSVFT--YILPALYHILKMPKLEEG 221
G + +P Q + +L + A + S T + +P L + +
Sbjct: 47 AG------FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA----N 96
Query: 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ 266
G AL+++PTRELA QI + S R ++ +
Sbjct: 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK 141
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSAN 30
M+SAT+ ++++ K L + I +++G+ N
Sbjct: 215 MFSATFAYDVEQWCKLNLDNVISVSIGARN 244
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 6e-24
Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 54/175 (30%)
Query: 123 ITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKN-KKCGDKESKNWTIPLNF 181
+ G N P +++ + + I+ N + +T P
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIM---------------GNIELTR------YTRPTPV 41
Query: 182 QAKKFISVLQKK-----AEVQSRSVFT-------YILPALYHILKMPKLE---------- 219
Q + +K+ A+ T ++LP L I E
Sbjct: 42 QKHAIPIIKEKRDLMACAQ-------TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94
Query: 220 ---EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
PI+LVLAPTRELA QI FS R+R +YGG Q+ L
Sbjct: 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 149
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 9e-20
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAK 52
M+SAT+P+EIQ LA++FL + I L VG + + NI Q V E +K +
Sbjct: 215 MFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSF 265
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 4e-23
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 204 YILPALYHILKMPK-LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 262
Y++P H+ P E+ +GP LVL PTRELA ++A S +S ++ C+YGG +
Sbjct: 74 YLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRN 132
Query: 263 KMYQVILLR 271
+ Q+ +
Sbjct: 133 RNGQIEDIS 141
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-10
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
M SATWP +++LA +L DP+ + V
Sbjct: 203 MTSATWPDTVRQLALSYLKDPMIVYV 228
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 4e-22
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 33/164 (20%)
Query: 120 EHNITLIGQNI--PKPVKTLDETNIPSYILGPMKPKTTNNENNHNKN-KKCGDKESKNWT 176
+++ G + ++ DE + I N +
Sbjct: 6 SIPVSVTGPDYSATNVIENFDELKLDPTIR---------------NNILLAS------YQ 44
Query: 177 IPLNFQAKKFISVLQKK---AEVQSRSVFT--YILPALYHILK----MPKLEEGDGPIAL 227
P Q ++L+ + A Q+ S T +++P + H++ + + P L
Sbjct: 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCL 104
Query: 228 VLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
+LAPTRELA QI + FS +R +YGG Q+ ++
Sbjct: 105 ILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ 148
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-16
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFV 41
M+SAT+P+EIQKLA +FL + I + VG + + +IKQ +
Sbjct: 214 MFSATFPKEIQKLAADFLYNYIFMTVGRVG-STSDSIKQEI 253
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
+ LP L +L+ P+ ALVL PTRELA QI ++ ++ A + GG
Sbjct: 97 FALPILNALLETPQ-----RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 151
Query: 264 MYQVILLR 271
M Q + L
Sbjct: 152 MSQSLALA 159
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
+++P L L + DG L+++PTRELA Q V+ + + GG
Sbjct: 79 FLVPVL-EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137
Query: 264 MYQVILLR 271
++ +
Sbjct: 138 KHEAERIN 145
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
+++PA+ ++ + +G L+L+PTRELA Q V+ + + GG+++
Sbjct: 108 FLIPAV-ELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNR 166
Query: 264 MYQVILLR 271
+ L
Sbjct: 167 SAEAQKLG 174
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 9e-11
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
++ AL+ K G + ++ PT L +Q + + +++ Y K
Sbjct: 53 GMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKK 103
Query: 264 MYQVILLRILTS 275
+ +
Sbjct: 104 EEKEKFEKSFEE 115
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 11/74 (14%), Positives = 16/74 (21%), Gaps = 22/74 (29%)
Query: 1 MWSATWPREIQKLAKE---------------------FLSDPIQLNVGSANLAANPNIKQ 39
+S +I + K D + VG A NI
Sbjct: 175 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVA-RNITH 233
Query: 40 FVEICHEYEKPAKW 53
EK +
Sbjct: 234 VRISSRSKEKLVEL 247
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 9e-11
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
AL+LAPTRELA QIQ V+ + M I+ GGTS + LR
Sbjct: 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 130
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
ALVLAPTRELAQQIQ VI M GGT+ ++ L+
Sbjct: 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 203 TYILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261
+++P L K++ I AL++ PTRELA Q V+ + I GGT
Sbjct: 74 AFVIPTL------EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGT 127
Query: 262 SKMYQVILLR 271
+ ++ L
Sbjct: 128 NLRDDILRLN 137
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEK 49
++SAT+P +++ + L P ++N+ L I Q+ E +K
Sbjct: 199 LFSATFPLTVKEFMVKHLHKPYEINL-MEELTL-KGITQYYAFVEERQK 245
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 3e-10
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
AL+LAPTRELA QIQ V+ + M I+ GGTS + LR
Sbjct: 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 137
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF-VEICHEYEK 49
SAT P ++ ++ +F+ +P+++ V L IKQF V + E K
Sbjct: 200 SATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYK 246
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 5e-10
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
ALVLAPTRELAQQIQ V+ M GGT+ +V L+
Sbjct: 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 156
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-06
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF-VEICHEYEK 49
SAT P ++ ++ K+F+ DPI++ V L I+QF + + E K
Sbjct: 221 SATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREEWK 267
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 6e-10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
AL+LAPTRELA QIQ + M ++ GGT+ + L
Sbjct: 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF-VEICHEYEK 49
SAT P EI ++ +F++DPI++ V L IKQF V + E K
Sbjct: 217 SATLPHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWK 263
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 217 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
+ E +G A++L PTRELA Q+ I ++ A +YGG + Q+ L+
Sbjct: 68 LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-06
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEK 49
SAT PREI LAK+++ D + N NI+Q +E E+
Sbjct: 185 SATMPREILNLAKKYMGDYSFIKA-----KINANIEQSYVEVNENER 226
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQV 267
A+ LAP+RELA+Q V+ + +I + K Q+
Sbjct: 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI 120
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF-VEICHEYEK 49
SAT+ +++ AK+ + + L + + + IKQ ++ +E +K
Sbjct: 184 SATFADAVRQYAKKIVPNANTLELQTNEVNV-DAIKQLYMDCKNEADK 230
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
+LV+ PTREL +Q+ + I R M + A +YGG Q+ +R
Sbjct: 59 SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR 104
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 9e-05
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEK 49
++SAT P EI+K+ K+F+++ ++ N++ + +
Sbjct: 165 LFSATIPEEIRKVVKDFITNYEEIEACI----GLANVEHKFVHVKDDWR 209
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR----TMRIRHACLYG 259
+++P H++ K + A+++APTR+LA QI+A + + L G
Sbjct: 77 FLIPIFQHLINT-KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 260 GTSKMYQVILLR 271
GT + +
Sbjct: 136 GTDFRAAMNKMN 147
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL---AANPNIKQFVEICHEYEK 49
++SAT ++QKLA ++ L + + + A+ I Q V I ++
Sbjct: 218 LFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFAN 269
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 206 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR----TMRIRHACLYGGT 261
+P H++ K + A+++APTR+LA QI+A + + L GGT
Sbjct: 130 IPIFQHLINT-KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 188
Query: 262 SKMYQVILLR 271
+ +
Sbjct: 189 DFRAAMNKMN 198
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANL---AANPNIKQFVEICHEYEK 49
SAT ++QKLA ++ L + + + A+ I Q V I ++
Sbjct: 271 SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFAN 320
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-09
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 203 TYILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGG 260
++L L +LE G + LV+ TRELA QI FS+ M ++ A +GG
Sbjct: 67 VFVLATL------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 120
Query: 261 TSKMYQVILLR 271
S +L+
Sbjct: 121 LSIKKDEEVLK 131
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-09
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTSKMYQVILLR 271
L+LAPTRE+A QI +VI+ M + GGT L+
Sbjct: 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-09
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 206 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 265
LP + P E G P ALVL PTRELA Q+ + ++ + +++ +YGGT
Sbjct: 57 LPIAERL--APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKV--VAVYGGTGYGK 112
Query: 266 QVILLR 271
Q L
Sbjct: 113 QKEALL 118
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 203 TYILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGG 260
++L L +LE G + LV+ TRELA QI FS+ M ++ A +GG
Sbjct: 61 VFVLATL------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 114
Query: 261 TSKMYQVILLR 271
S +L+
Sbjct: 115 LSIKKDEEVLK 125
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEK 49
M+SAT +EI+ + ++F+ DP+++ V ++Q+ + EK
Sbjct: 189 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK 237
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-08
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 203 TYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGT 261
Y++P L + + D A+V+ PTRELA Q+ + S+ M + GGT
Sbjct: 56 AYLIPLLERLD-----LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 110
Query: 262 SKMYQVILLR 271
+ ++ L
Sbjct: 111 NLRDDIMRLD 120
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-08
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTM----RIRHACLYGGTSKMYQVILLR 271
A++ APTRELA QI ++ I CL GGT K + L
Sbjct: 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 124
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 16 EFLSDPIQLNVGSANL------AANPNIKQFVEICHEYEKPAKWWDSNNGHYPKSVRFV 68
+++G+ NL AA+ ++ Q VE E K + P + F
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 61
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTS 262
L L+PT ELA Q VI + ++ A G
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTS 262
L L+PT ELA Q VI + ++ A G
Sbjct: 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 135
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-05
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF-VEICHEYEK 49
SAT+ + K A++ + DP + + IKQ+ V EK
Sbjct: 207 SATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEK 253
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTS 262
L L+PT ELA Q VI + ++ A G
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF-VEICHEYEK 49
SAT+ + K A++ + DP + + IKQ+ V EK
Sbjct: 274 SATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEK 320
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 20 DPIQLNVGSANLAANPNIKQFVEICHEYEKPAK 52
N+ + + NI Q V E +K +
Sbjct: 4 HHHHENLYFQ-GSTSENITQKVVWVEESDKRSF 35
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 44/290 (15%), Positives = 95/290 (32%), Gaps = 95/290 (32%)
Query: 9 EIQKLAKEFLS-DPIQLNVGSANLAANPN------------IKQFVEICHEYEKPAKWWD 55
Q L +E L+ +P +L++ + ++ + +E +P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP----A 369
Query: 56 SNNGHY------PKSVRF---VLG----------TAGFLLSAVSFSLPFRDDKTSVVTVP 96
+ P S +L + +SL + K S +++P
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 97 SYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQ-NIPKPVKTLDETNIP--SYI---LGPM 150
+ + K ++++ H +++ NIPK + D Y +G
Sbjct: 430 --------SIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-- 478
Query: 151 KPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQK-KAEVQSRSVFTYILPAL 209
+H KN + ++ + + L+F +F+ QK + + + + IL L
Sbjct: 479 ---------HHLKNIEHPERMTLFRMVFLDF---RFLE--QKIRHDSTAWNASGSILNTL 524
Query: 210 -----Y--HILK---------------MPKLEEGDGPIALVLAPTRELAQ 237
Y +I +PK+EE L+ + +L +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-----NLICSKYTDLLR 569
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.97 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.97 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.97 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.97 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.97 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.97 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.96 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.96 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.96 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.96 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.96 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.96 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.95 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.95 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.93 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.93 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.93 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.93 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.92 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.92 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.92 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.92 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.91 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.91 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.91 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.9 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.88 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.88 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.86 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.86 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.85 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.85 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.84 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.84 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.84 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.83 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.83 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.83 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.83 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.83 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.81 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.81 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.81 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.8 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.8 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.78 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.78 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.76 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.71 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.7 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.69 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.69 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.68 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.66 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.65 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.64 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.63 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.63 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.58 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.56 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.55 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.54 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.51 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.49 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.49 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.42 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.4 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.35 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.33 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.32 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.31 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.3 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.15 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.12 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.1 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.09 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 98.98 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 98.93 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 98.85 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 98.85 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 98.72 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 98.72 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 98.7 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 98.69 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.64 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 98.63 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 98.61 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 98.61 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 98.6 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 98.58 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 98.52 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 98.51 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 98.47 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 98.42 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 98.41 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 98.41 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 97.64 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 98.24 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 98.24 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.23 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 98.14 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 98.12 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 98.07 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 97.99 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 97.94 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 97.71 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 97.63 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 97.58 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 97.5 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 97.33 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 97.32 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 97.11 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 97.05 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 96.99 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.9 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 96.87 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 96.84 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 96.79 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 96.62 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.55 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.55 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 96.53 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 96.51 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.47 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.4 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 96.32 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.25 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.17 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.11 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 95.68 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 95.51 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 95.33 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 95.28 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 95.19 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 95.14 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 94.95 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 94.87 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 94.59 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 94.37 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 94.34 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 93.67 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 93.64 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 93.33 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 93.08 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 92.96 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 92.75 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 92.66 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 92.48 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 92.37 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 91.99 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 91.93 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 91.92 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 91.78 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 91.63 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 91.63 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 91.05 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 91.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 89.35 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 89.09 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 87.74 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 87.15 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 86.96 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 85.16 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 84.87 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 83.79 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 82.78 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 82.55 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 83.11 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 81.75 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 80.87 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 80.74 |
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=270.54 Aligned_cols=192 Identities=33% Similarity=0.555 Sum_probs=172.7
Q ss_pred CCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcc
Q psy10677 108 GKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFI 187 (317)
Q Consensus 108 ~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi 187 (317)
.+++++++.+++.+++.+.|.+.|.|+.+|+++++++.++++|.+.||..| +++|.++||.++ +|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~g~~~l 70 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEP---------TAIQAQGWPVAL--SGLDMV 70 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSC---------CHHHHHHHHHHH--HTCCEE
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE
Confidence 346789999999999999999999999999999999999999999999999 999999999999 999999
Q ss_pred cccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH
Q psy10677 188 SVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267 (317)
Q Consensus 188 ~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~ 267 (317)
++||||||||++|++|++.++...+......++++||++|||+||.|+++.++++.+..++++.+++||.+...+.
T Consensus 71 ----~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 146 (242)
T 3fe2_A 71 ----GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 146 (242)
T ss_dssp ----EEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred ----EECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Confidence 9999999999999999999998765545567899999999999999999999999999999999999999988877
Q ss_pred HHcc---CcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 268 ILLR---ILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 268 ~~~~---~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+. +|+||||++|.+++..+ .+++.++||||+|++ .||.++....+
T Consensus 147 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-~~~~~~~~~i~ 201 (242)
T 3fe2_A 147 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD-MGFEPQIRKIV 201 (242)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH-TTCHHHHHHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh-hCcHHHHHHHH
Confidence 7664 39999999999998865 566788999999999 99988766543
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=281.59 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=163.1
Q ss_pred CCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChh
Q psy10677 121 HNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRS 200 (317)
Q Consensus 121 ~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGK 200 (317)
..+.+.|.++|.|+.+|++++|++.++++|++.||..| ||+|.++||.++ +|+|++ ++|||||||
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p---------t~iQ~~ai~~i~--~g~d~i----~~a~TGsGK 106 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIP---------TPIQKCSIPVIS--SGRDLM----ACAQTGSGK 106 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSH
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCCEE----EECCCCCCc
Confidence 35778999999999999999999999999999999999 999999999999 999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEEC
Q psy10677 201 VFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSAT 277 (317)
Q Consensus 201 Tla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~T 277 (317)
|+||++|+++++...+......++++||++||||||.|+++.+++++...++++.+++||.+...+...+.. |+|+|
T Consensus 107 T~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~T 186 (434)
T 2db3_A 107 TAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186 (434)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEEC
T ss_pred hHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEC
Confidence 999999999999876543445689999999999999999999999999889999999999999888777654 89999
Q ss_pred cHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 278 NTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 278 P~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
||+|.+++.++ .+++.++||||+|++ +||.++....+
T Consensus 187 p~~l~~~l~~~~~~l~~~~~lVlDEah~~~~-~gf~~~~~~i~ 228 (434)
T 2db3_A 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLD-MGFSEDMRRIM 228 (434)
T ss_dssp HHHHHHHHHTTSCCCTTCCEEEEETHHHHTS-TTTHHHHHHHH
T ss_pred hHHHHHHHHhCCcccccCCeEEEccHhhhhc-cCcHHHHHHHH
Confidence 99999999875 466788999999999 99988876653
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-32 Score=240.27 Aligned_cols=178 Identities=21% Similarity=0.302 Sum_probs=156.5
Q ss_pred CceeecCCCCC--CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCCh
Q psy10677 122 NITLIGQNIPK--PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSR 199 (317)
Q Consensus 122 ~i~~~g~~~~~--~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsG 199 (317)
.+.+.|...|. ++.+|++++|++.++++|++.||..| +++|.++||.++ +|+|++ ++||||||
T Consensus 8 ~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----~~a~TGsG 72 (253)
T 1wrb_A 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRP---------TPIQKNAIPAIL--EHRDIM----ACAQTGSG 72 (253)
T ss_dssp CCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSS
T ss_pred ceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCh
Confidence 45668888887 89999999999999999999999999 999999999999 999999 99999999
Q ss_pred hHHHHHHHHHHHHHcCCCC----CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---
Q psy10677 200 SVFTYILPALYHILKMPKL----EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--- 272 (317)
Q Consensus 200 KTla~~lp~l~~l~~~~~~----~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--- 272 (317)
||++|++|+++++...... ....++++||++|||+||.|+++.++++....++++..++||.+...+...+..
T Consensus 73 KT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (253)
T 1wrb_A 73 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCH 152 (253)
T ss_dssp HHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCC
Confidence 9999999999999764311 123468999999999999999999999999889999999999998887776654
Q ss_pred cEEECcHHHHHHHhcCC-----CCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 273 LTSATNTSLGIYLQQND-----AHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 273 ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
|+|+||++|.+++..+. +++.++||||+|++ .||.++....+
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~ 199 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD-MGFEPQIRKII 199 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHH-TTCHHHHHHHH
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHh-CchHHHHHHHH
Confidence 99999999999998764 45788999999999 89988766543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=251.08 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=146.3
Q ss_pred CceeecCCCCCC---cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccC
Q psy10677 122 NITLIGQNIPKP---VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEV 196 (317)
Q Consensus 122 ~i~~~g~~~~~~---~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~t 196 (317)
.+.+.+.+.+.| +.+|++++|++.++++|.++||..| |++|.++||.++ .| +|++ ++|||
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~p---------t~iQ~~ai~~il--~~~~~~~l----~~a~T 140 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP---------SKIQENALPLML--AEPPQNLI----AQSQS 140 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHT--SSSCCCEE----EECCT
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCCeEE----EECCC
Confidence 455666665554 5789999999999999999999999 999999999999 76 9999 99999
Q ss_pred CChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEE
Q psy10677 197 QSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRILTS 275 (317)
Q Consensus 197 GsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv 275 (317)
|||||+||++|+++++... ..+|++|||+||||||.|+++.++.+.+.. ++++..++||.+.......-.+|+|
T Consensus 141 GsGKT~a~~lp~l~~l~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV 215 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVI 215 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEE
T ss_pred CCCccHHHHHHHHHhhhcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEE
Confidence 9999999999999998653 357899999999999999999999999865 7899999999876544433334999
Q ss_pred ECcHHHHHHHhc-C-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 276 ATNTSLGIYLQQ-N-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 276 ~TP~~l~~~l~~-~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
||||+|++++.+ + .+.++++||||+|++..||.+....
T Consensus 216 ~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~ 259 (300)
T 3fmo_B 216 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (300)
T ss_dssp ECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHH
T ss_pred ECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHH
Confidence 999999999965 2 5778899999999986677665543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=243.09 Aligned_cols=183 Identities=19% Similarity=0.260 Sum_probs=157.7
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCC----CCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDET----NIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
+++.+++.+++.+.|.+.|.|+.+|+++ ++++.++++|.+.||..| +++|.+++|.++ +|+|++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l- 70 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMP---------TPIQMQAIPVML--HGRELL- 70 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE-
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE-
Confidence 5889999999999999999999999987 899999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI 268 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~ 268 (317)
++||||||||++|++|++.++... ...++++||++||++||.|+++.++++....++++..++||........
T Consensus 71 ---~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 3dkp_A 71 ---ASAPTGSGKTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 143 (245)
T ss_dssp ---EECCTTSCHHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS
T ss_pred ---EECCCCCcHHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh
Confidence 999999999999999999998643 2357899999999999999999999999988999888887765433322
Q ss_pred Hcc----CcEEECcHHHHHHHhcC-------CCCCCCCchhHHHhhh--cCCcHHHHhh
Q psy10677 269 LLR----ILTSATNTSLGIYLQQN-------DAHSPCLSVWRRLQDI--LGLTEETCVN 314 (317)
Q Consensus 269 ~~~----~ilv~TP~~l~~~l~~~-------~~~~~~lde~d~l~~~--~gf~~~~~~~ 314 (317)
... +|+||||++|.+++..+ .+.+.++||||++++. .||.++....
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i 202 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI 202 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHH
Confidence 211 38999999999999875 4667899999999984 4666665543
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=233.59 Aligned_cols=172 Identities=24% Similarity=0.333 Sum_probs=142.4
Q ss_pred ecCCCCCCcccccC-CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 126 IGQNIPKPVKTLDE-TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 126 ~g~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..+|.|..+|++ +++++.++++|.+.||..| +++|.++||.++ +|+|++ ++||||||||++|
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----~~apTGsGKT~~~ 74 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKP---------TPIQSQAWPIIL--QGIDLI----VVAQTGTGKTLSY 74 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHH
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHH
Confidence 45678999999999 7999999999999999999 999999999999 999999 9999999999999
Q ss_pred HHHHHHHHHcCCC-CCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHH
Q psy10677 205 ILPALYHILKMPK-LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTS 280 (317)
Q Consensus 205 ~lp~l~~l~~~~~-~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~ 280 (317)
++|++.++..... .....++++||++||++||.|+++.++++.. .++++..++||.+...+...+. +|+|+||++
T Consensus 75 ~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~ 153 (228)
T 3iuy_A 75 LMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGR 153 (228)
T ss_dssp HHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------CHHHHHSCCSEEEECHHH
T ss_pred HHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 9999998865421 1123678999999999999999999999873 5899999999998877666554 499999999
Q ss_pred HHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 281 LGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 281 l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+.+++..+ .+++.++||||++++ .||.++....
T Consensus 154 l~~~~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i 191 (228)
T 3iuy_A 154 LNDLQMNNSVNLRSITYLVIDEADKMLD-MEFEPQIRKI 191 (228)
T ss_dssp HHHHHHTTCCCCTTCCEEEECCHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHcCCcCcccceEEEEECHHHHhc-cchHHHHHHH
Confidence 99988875 466788999999999 8998776554
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=229.97 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=142.0
Q ss_pred ecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 126 IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 126 ~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.|...|.+..+|+++++++.+.++|++.||..| +++|.+++|.++ +|+|++ ++||||||||++|+
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERP---------SPVQLKAIPLGR--CGLDLI----VQAKSGTGKTCVFS 79 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHH
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCcHHHHHH
Confidence 466677888999999999999999999999999 999999999999 999999 99999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC--cEEECcHHHH
Q psy10677 206 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI--LTSATNTSLG 282 (317)
Q Consensus 206 lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~ 282 (317)
+|++.++... ..++++||++||++||.|+++.++++.... ++++.+++||.+...+...+.. |+|+||++|.
T Consensus 80 l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~ 154 (230)
T 2oxc_A 80 TIALDSLVLE-----NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIK 154 (230)
T ss_dssp HHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHH
Confidence 9999988643 346899999999999999999999998765 8999999999998887776655 9999999999
Q ss_pred HHHhcC-----CCCCCCCchhHHHhhhcC-CcHHHHh
Q psy10677 283 IYLQQN-----DAHSPCLSVWRRLQDILG-LTEETCV 313 (317)
Q Consensus 283 ~~l~~~-----~~~~~~lde~d~l~~~~g-f~~~~~~ 313 (317)
+++..+ .+++.++||||++++ .| |.++...
T Consensus 155 ~~~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~~ 190 (230)
T 2oxc_A 155 QLIELDYLNPGSIRLFILDEADKLLE-EGSFQEQINW 190 (230)
T ss_dssp HHHHTTSSCGGGCCEEEESSHHHHHS-TTSSHHHHHH
T ss_pred HHHhcCCcccccCCEEEeCCchHhhc-CcchHHHHHH
Confidence 998875 356788999999999 77 7765543
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=245.49 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=156.8
Q ss_pred CceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhH
Q psy10677 122 NITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSV 201 (317)
Q Consensus 122 ~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKT 201 (317)
.+...|.++|.++.+|++++|++.++++|...||..| ||+|.++||.++ +|+|++ ++||||||||
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~i~--~~~~~l----v~a~TGsGKT 66 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRP---------TPVQKHAIPIIK--EKRDLM----ACAQTGSGKT 66 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHH
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHc--cCCCEE----EEcCCCCHHH
Confidence 3567899999999999999999999999999999999 999999999999 999999 9999999999
Q ss_pred HHHHHHHHHHHHcCCCC-------------CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH
Q psy10677 202 FTYILPALYHILKMPKL-------------EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI 268 (317)
Q Consensus 202 la~~lp~l~~l~~~~~~-------------~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~ 268 (317)
++|++|+++++...... ....++++||++|||+||.|+++.++++....++++..++||.+...+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 146 (417)
T 2i4i_A 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR 146 (417)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH
Confidence 99999999998754321 12345899999999999999999999999988999999999999988877
Q ss_pred HccC---cEEECcHHHHHHHhcCC-----CCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 269 LLRI---LTSATNTSLGIYLQQND-----AHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 269 ~~~~---ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.. |+|+||++|.+++..+. +++.++||||.+++ .+|.+.....
T Consensus 147 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~i 199 (417)
T 2i4i_A 147 DLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD-MGFEPQIRRI 199 (417)
T ss_dssp HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH-TTCHHHHHHH
T ss_pred HhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc-cCcHHHHHHH
Confidence 7654 99999999999998764 55689999999999 8888776544
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=228.56 Aligned_cols=181 Identities=17% Similarity=0.235 Sum_probs=153.9
Q ss_pred HHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccccc
Q psy10677 111 KEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVL 190 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~ 190 (317)
+++++++++.... ..+.++.+|+++++++.++++|++.||..| +++|.++++.++ +|+|++
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~l--- 66 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLV---------TEIQKQTIGLAL--QGKDVL--- 66 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBC---------CHHHHHHHHHHH--TTCCEE---
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE---
Confidence 5677777776553 124567899999999999999999999999 999999999999 999999
Q ss_pred ceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc
Q psy10677 191 QKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL 270 (317)
Q Consensus 191 ~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~ 270 (317)
++||||||||++|++|+++++..... ....++++||++||++||.|+++.++++....++++.+++||.+...+...+
T Consensus 67 -i~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (236)
T 2pl3_A 67 -GAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 144 (236)
T ss_dssp -EECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH
T ss_pred -EEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC
Confidence 99999999999999999999876432 2235789999999999999999999999988889999999999887776666
Q ss_pred cC--cEEECcHHHHHHHhcC------CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 271 RI--LTSATNTSLGIYLQQN------DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 271 ~~--ilv~TP~~l~~~l~~~------~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.. |+|+||++|.+++..+ .+++.++||||++++ .||.+....
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~ 194 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD-MGFADTMNA 194 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH-TTTHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc-CCcHHHHHH
Confidence 54 9999999999988763 566889999999999 898776554
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=232.06 Aligned_cols=168 Identities=21% Similarity=0.195 Sum_probs=136.6
Q ss_pred eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 125 LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+...++|.++.+|++++|++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~ai~~i~--~~~~~l----i~apTGsGKT~~~ 84 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKP---------SAIQQRAIIPCI--KGYDVI----AQAQSGTGKTATF 84 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----ECCCSSHHHHHHH
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCcHHHHH
Confidence 3456678889999999999999999999999999 999999999999 999999 9999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHH
Q psy10677 205 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTS 280 (317)
Q Consensus 205 ~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~ 280 (317)
++|+++.+... ..++++||++||++||.|+++.++++....++++..++||.+...+...+. .|+|+||++
T Consensus 85 ~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~ 159 (237)
T 3bor_A 85 AISILQQLEIE-----FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGR 159 (237)
T ss_dssp HHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHH
T ss_pred HHHHHHHHHhc-----CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHH
Confidence 99999987543 346899999999999999999999999988999999999998877665553 489999999
Q ss_pred HHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 281 LGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 281 l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
|.+++..+ .+++.++||||++++ .||.+....
T Consensus 160 l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~ 196 (237)
T 3bor_A 160 VFDMLNRRYLSPKWIKMFVLDEADEMLS-RGFKDQIYE 196 (237)
T ss_dssp HHHHHHTTSSCSTTCCEEEEESHHHHHH-TTCHHHHHH
T ss_pred HHHHHHhCCcCcccCcEEEECCchHhhc-cCcHHHHHH
Confidence 99998875 467889999999999 888776544
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-30 Score=229.02 Aligned_cols=162 Identities=22% Similarity=0.255 Sum_probs=145.0
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
.+..+|+++++++.++++|++.||..| +++|.+++|.++ +|+|++ ++||||||||++|++|++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----v~a~TGsGKT~~~~~~il~~ 104 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKP---------TKIQIEAIPLAL--QGRDII----GLAETGSGKTGAFALPILNA 104 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHH
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EEcCCCCCchhHhHHHHHHH
Confidence 356789999999999999999999999 999999999999 999999 99999999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
+... ..++++||++|||+||.|+++.++++....++++.+++||.+...+...+.. |+|+||++|.+++...
T Consensus 105 l~~~-----~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 105 LLET-----PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp HHHS-----CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS
T ss_pred HhcC-----CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 8764 2468999999999999999999999999889999999999998777665543 9999999999988762
Q ss_pred ------CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 ------DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ------~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+++.++||||++++ .+|.++....
T Consensus 180 ~~~~l~~~~~lViDEah~l~~-~~~~~~l~~i 210 (249)
T 3ber_A 180 KGFNLRALKYLVMDEADRILN-MDFETEVDKI 210 (249)
T ss_dssp TTCCCTTCCEEEECSHHHHHH-TTCHHHHHHH
T ss_pred CCcCccccCEEEEcChhhhhc-cChHHHHHHH
Confidence 467889999999999 8998776544
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-30 Score=225.39 Aligned_cols=160 Identities=19% Similarity=0.273 Sum_probs=140.8
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
|..+|+++++++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|+++++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKP---------TEIQERIIPGAL--RGESMV----GQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCSSHHHHHHHHHHHHHHC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHH
Confidence 45789999999999999999999999 999999999999 999999 999999999999999999988
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC----CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM----RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~----~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
... ..++++||++||++||.|+++.++++.... ++++..++||.+...+...+.. |+|+||+++.+++
T Consensus 67 ~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 67 KPE-----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred HhC-----cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 643 346899999999999999999999999876 7899999999987766655543 8999999999998
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
..+ .+++.++||||++.+ .||.++...
T Consensus 142 ~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~ 173 (219)
T 1q0u_A 142 REQALDVHTAHILVVDEADLMLD-MGFITDVDQ 173 (219)
T ss_dssp HTTCCCGGGCCEEEECSHHHHHH-TTCHHHHHH
T ss_pred HcCCCCcCcceEEEEcCchHHhh-hChHHHHHH
Confidence 875 456788999999999 888766544
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-30 Score=229.38 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=140.8
Q ss_pred ccccCCC--CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 135 KTLDETN--IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 135 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+|++++ +++.++++|++.||..| +++|.+++|.++ .|+|++ ++||||||||++|++|+++.+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~l~~l~~l 116 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNM---------TEIQHKSIRPLL--EGRDLL----AAAKTGSGKTLAFLIPAVELI 116 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBC---------CHHHHHHHHHHH--HTCCCE----ECCCTTSCHHHHHHHHHHHHH
T ss_pred CChhHhccccCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCcEE----EEccCCCCchHHHHHHHHHHH
Confidence 4677776 99999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~~l~~~- 288 (317)
.+.+. ....++++||++|||+||.|+++.++++....++++..++||.....+...+. +|+|||||++.+++...
T Consensus 117 ~~~~~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 117 VKLRF-MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp HHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT
T ss_pred Hhccc-cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC
Confidence 87532 12347899999999999999999999999999999999999999887776554 39999999999988764
Q ss_pred -----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 -----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 -----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.+.++||||+|++ .||.++....
T Consensus 196 ~~~~~~l~~lViDEah~l~~-~~~~~~l~~i 225 (262)
T 3ly5_A 196 GFMYKNLQCLVIDEADRILD-VGFEEELKQI 225 (262)
T ss_dssp TCCCTTCCEEEECSHHHHHH-TTCHHHHHHH
T ss_pred CcccccCCEEEEcChHHHhh-hhHHHHHHHH
Confidence 477889999999999 8998776543
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=221.61 Aligned_cols=165 Identities=23% Similarity=0.215 Sum_probs=139.7
Q ss_pred CCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 128 QNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 128 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
.+.|+++.+|+++++++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~~pTGsGKT~~~~~~ 71 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEP---------SAIQQRAIMPII--EGHDVL----AQAQSGTGKTGTFSIA 71 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHH
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCC---------cHHHHHHHHHHh--cCCCEE----EECCCCCcHHHHHHHH
Confidence 3467788999999999999999999999999 999999999999 999999 9999999999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHH
Q psy10677 208 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYL 285 (317)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l 285 (317)
+++++... ..++++||++||++||.|+++.++++....++++..++||.+...+...+.. |+|+||++|.+++
T Consensus 72 ~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 72 ALQRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI 146 (224)
T ss_dssp HHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHH
T ss_pred HHHHHhcc-----CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHH
Confidence 99988643 3478999999999999999999999999889999999999988777766544 9999999999998
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
..+ .+++.++||||++.+ .+|.+....
T Consensus 147 ~~~~~~~~~~~~iViDEah~~~~-~~~~~~l~~ 178 (224)
T 1qde_A 147 QRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQ 178 (224)
T ss_dssp HTTSSCCTTCCEEEEETHHHHHH-TTCHHHHHH
T ss_pred HhCCcchhhCcEEEEcChhHHhh-hhhHHHHHH
Confidence 875 467888999999999 888776544
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=217.16 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=141.9
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|++.++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~apTGsGKT~~~~~~~~~~~~~ 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKP---------SPIQEESIPIAL--SGRDIL----ARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCSSSTTHHHHHHHHHHHCCT
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHc--cCCCEE----EECCCCCchHHHHHHHHHHHhcc
Confidence 479999999999999999999999 999999999999 999999 99999999999999999998754
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
. ..++++||++||++|+.|+++.++++.+.. ++++..++||.+..++...+.. |+|+||+++.+++..+
T Consensus 68 ~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 142 (206)
T 1vec_A 68 K-----KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVA 142 (206)
T ss_dssp T-----SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCS
T ss_pred c-----CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCc
Confidence 3 356899999999999999999999999877 7999999999998887776654 9999999999998875
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+++.++||||++.+ .+|......
T Consensus 143 ~~~~~~~lViDEah~~~~-~~~~~~l~~ 169 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLS-QDFVQIMED 169 (206)
T ss_dssp CCTTCCEEEEETHHHHTS-TTTHHHHHH
T ss_pred CcccCCEEEEEChHHhHh-hCcHHHHHH
Confidence 567889999999999 788765443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=217.34 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=138.9
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
|...+....+|++++|++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----i~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVFVL 70 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHH
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCchhhhhhH
Confidence 44444455679999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHcc----CcEEECcHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLR----ILTSATNTSL 281 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l 281 (317)
|++..+... ..++++||++||++|+.|+++.++++.+.. ++++..++||.+...+...+. +|+|+||+++
T Consensus 71 ~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l 145 (220)
T 1t6n_A 71 ATLQQLEPV-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145 (220)
T ss_dssp HHHHHCCCC-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHH
T ss_pred HHHHhhhcc-----CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHH
Confidence 999987542 246799999999999999999999998876 799999999999877766553 4999999999
Q ss_pred HHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 282 GIYLQQN-----DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 282 ~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+++..+ .+++.++||||++++..+|.....
T Consensus 146 ~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 181 (220)
T 1t6n_A 146 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ 181 (220)
T ss_dssp HHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHH
T ss_pred HHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHH
Confidence 9998875 456788999999987456655443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=209.94 Aligned_cols=158 Identities=23% Similarity=0.310 Sum_probs=138.5
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+|+++++++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|+++++...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~l----i~~~TGsGKT~~~~~~~~~~l~~~ 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTP---------TPIQAAALPLAL--EGKDLI----GQARTGTGKTLAFALPIAERLAPS 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHCCCC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHc--CCCCEE----EECCCCChHHHHHHHHHHHHHhhc
Confidence 69999999999999999999999 999999999999 999999 999999999999999999998653
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHHHHHHHhcC----
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTSLGIYLQQN---- 288 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~~l~~~---- 288 (317)
. ....++++||++||++|+.|+++.++++... +++..++||.+...+...+. .|+|+||+++.+++..+
T Consensus 67 ~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 142 (207)
T 2gxq_A 67 Q--ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDL 142 (207)
T ss_dssp C--CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCC
T ss_pred c--ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcch
Confidence 2 1245789999999999999999999999875 78889999998766655443 49999999999998874
Q ss_pred -CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 -DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 -~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+++.++||||++++ .+|.+....
T Consensus 143 ~~~~~iViDEah~~~~-~~~~~~~~~ 167 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLS-MGFEEEVEA 167 (207)
T ss_dssp TTCSEEEEESHHHHHH-TTCHHHHHH
T ss_pred hhceEEEEEChhHhhc-cchHHHHHH
Confidence 567889999999999 888776544
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=227.15 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=147.3
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
....+.+..+|++++|++.++++|++.||..| +|+|.+++|.++ +|+|++ ++||||||||++|++
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~ai~~i~--~~~~~l----v~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKP---------SAIQQRAIKQII--KGRDVI----AQSQSGTGKTATFSI 93 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHH
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCCchHHHHH
Confidence 33445667899999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHHHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTSLGI 283 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~ 283 (317)
|+++.+... ..++++||++||++||.|+++.++++....++++..++||.+...+...+. .|+|+||++|.+
T Consensus 94 ~~~~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~ 168 (410)
T 2j0s_A 94 SVLQCLDIQ-----VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD 168 (410)
T ss_dssp HHHHTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred HHHHHHhhc-----cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHH
Confidence 999887532 346899999999999999999999999999999999999999888776654 499999999999
Q ss_pred HHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 284 YLQQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 284 ~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
++..+ .+++.++||||++++ .+|.+.....
T Consensus 169 ~l~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i 203 (410)
T 2j0s_A 169 MIRRRSLRTRAIKMLVLDEADEMLN-KGFKEQIYDV 203 (410)
T ss_dssp HHHTTSSCCTTCCEEEEETHHHHTS-TTTHHHHHHH
T ss_pred HHHhCCccHhheeEEEEccHHHHHh-hhhHHHHHHH
Confidence 99875 466789999999999 8887665443
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-27 Score=226.37 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=141.5
Q ss_pred ceeecCCCCCC---cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccCC
Q psy10677 123 ITLIGQNIPKP---VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQ 197 (317)
Q Consensus 123 i~~~g~~~~~~---~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tG 197 (317)
+.+.+.+.+.| +.+|++++|++.++++|+++||..| +|+|.++||.++ .| +|++ ++||||
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p---------~~~Q~~ai~~il--~~~~~~~l----~~a~TG 141 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP---------SKIQENALPLML--AEPPQNLI----AQSQSG 141 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHT--SBSCCEEE----EECCSS
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCCcEE----EEcCCC
Confidence 34455555544 5789999999999999999999999 999999999999 66 9999 999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEEE
Q psy10677 198 SRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRILTSA 276 (317)
Q Consensus 198 sGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~ 276 (317)
||||++|++|+++++... ..++++|||+||++||.|+++.++.+.+.. ++.+...+|+.........-..|+||
T Consensus 142 sGKT~~~~l~il~~l~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~ 216 (479)
T 3fmp_B 142 TGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIG 216 (479)
T ss_dssp SSHHHHHHHHHHTTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEE
T ss_pred CchhHHHHHHHHHHHhhc-----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEE
Confidence 999999999999887543 346799999999999999999999998864 68888888887654433333349999
Q ss_pred CcHHHHHHHhc------CCCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 277 TNTSLGIYLQQ------NDAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 277 TP~~l~~~l~~------~~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
|||+|.+++.. ..+.+.++||+|++++..||.....
T Consensus 217 Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 258 (479)
T 3fmp_B 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (479)
T ss_dssp CHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHH
T ss_pred CchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHH
Confidence 99999999865 3577889999999998567665544
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=215.69 Aligned_cols=168 Identities=22% Similarity=0.197 Sum_probs=149.6
Q ss_pred ecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 126 IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 126 ~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
...+++....+|+++++++.+++.|++.||..| +++|.++|+.++ +|+|++ ++||||||||++|+
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKP---------SAIQQRAILPCI--KGYDVI----AQAQSGTGKTATFA 95 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----ECCCSCSSSHHHHH
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCC---------CHHHHHHhHHHh--CCCCEE----EECCCCCcccHHHH
Confidence 455667788999999999999999999999999 999999999999 999999 99999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHH
Q psy10677 206 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSL 281 (317)
Q Consensus 206 lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l 281 (317)
+|+++.+... ..+.++||++||++||.|+++.++++....++.+..++||.+...+...+. .|+|+||++|
T Consensus 96 ~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 170 (414)
T 3eiq_A 96 ISILQQIELD-----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 170 (414)
T ss_dssp HHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHH
T ss_pred HHHHHHHhhc-----CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHH
Confidence 9999987643 246799999999999999999999999989999999999999888877665 3999999999
Q ss_pred HHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 282 GIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 282 ~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+++..+ .+++.++||||++.+ .+|.......
T Consensus 171 ~~~l~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~~ 207 (414)
T 3eiq_A 171 FDMLNRRYLSPKYIKMFVLDEADEMLS-RGFKDQIYDI 207 (414)
T ss_dssp HHHHHHTSSCSTTCCEEEECSHHHHHH-TTTHHHHHHH
T ss_pred HHHHHcCCcccccCcEEEEECHHHhhc-cCcHHHHHHH
Confidence 9998875 367889999999998 8887665543
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=213.28 Aligned_cols=163 Identities=23% Similarity=0.214 Sum_probs=144.7
Q ss_pred CCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHH
Q psy10677 130 IPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPAL 209 (317)
Q Consensus 130 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l 209 (317)
...+..+|++++|++.++++|.+.||..| +|+|.++++.++ .|+|++ ++||||||||++|++|++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----v~~~TGsGKT~~~~~~~~ 80 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEP---------SAIQQRAIMPII--EGHDVL----AQAQSGTGKTGTFSIAAL 80 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--HTCCEE----ECCCSSHHHHHHHHHHHH
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHH
Confidence 45667899999999999999999999999 999999999999 999999 999999999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc--CcEEECcHHHHHHHhc
Q psy10677 210 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR--ILTSATNTSLGIYLQQ 287 (317)
Q Consensus 210 ~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~--~ilv~TP~~l~~~l~~ 287 (317)
..+... ..++++||++||++|+.|+++.+.++....++++..++||.+..++...+. .|+|+||++|.+.+..
T Consensus 81 ~~l~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~ 155 (394)
T 1fuu_A 81 QRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR 155 (394)
T ss_dssp HHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT
T ss_pred HHhhcc-----CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh
Confidence 987643 347899999999999999999999999988999999999999877666543 4999999999999886
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
+ .+++.++||||.+.+ .+|.+....
T Consensus 156 ~~~~~~~~~~vIiDEah~~~~-~~~~~~~~~ 185 (394)
T 1fuu_A 156 RRFRTDKIKMFILDEADEMLS-SGFKEQIYQ 185 (394)
T ss_dssp TSSCCTTCCEEEEETHHHHHH-TTCHHHHHH
T ss_pred CCcchhhCcEEEEEChHHhhC-CCcHHHHHH
Confidence 4 567889999999998 787765443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-26 Score=225.12 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=136.3
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|++.++++|++.||..| +|+|.++||.++...|+|++ ++||||||||+||++|+++++...+. ...
T Consensus 28 l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~il~~~~~dvl----v~apTGsGKTl~~~lpil~~l~~~~~-~~~ 93 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGL---------TPVQQKTIKPILSSEDHDVI----ARAKTGTGKTFAFLIPIFQHLINTKF-DSQ 93 (579)
T ss_dssp SCHHHHHHHHTTTCSSC---------CHHHHHHHHHHHCSSSEEEE----EECCTTSCHHHHHHHHHHHHHHHTTT-SST
T ss_pred CCHHHHHHHHHCCCCCC---------CHHHHHHHHHHHccCCCeEE----EEcCCCcHHHHHHHHHHHHHHHhccc-ccc
Confidence 99999999999999999 99999999999854478999 99999999999999999999987542 234
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcC----CCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhc------
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQ------ 287 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~----~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~------ 287 (317)
.++++|||+||++||.|+++.++++... ..+.+..++||.+...+...+. .|+||||++|.+++..
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 5789999999999999999999998742 3578899999999888776653 3999999999988765
Q ss_pred CCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 288 NDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 288 ~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
..+.++++||||+|++ +||.++...
T Consensus 174 ~~~~~lViDEah~l~~-~gf~~~~~~ 198 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLE-IGFRDDLET 198 (579)
T ss_dssp TTCCEEEEETHHHHTS-TTTHHHHHH
T ss_pred ccCCEEEEEChHHhhc-CCCHHHHHH
Confidence 4688889999999999 999887654
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-26 Score=214.62 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=138.2
Q ss_pred CCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHH
Q psy10677 131 PKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPA 208 (317)
Q Consensus 131 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~ 208 (317)
..++.+|+++++++.++++|++.||..| +|+|.+++|.++ +| +|++ ++||||||||++|++|+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~~~l----v~apTGsGKT~~~~~~~ 85 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRP---------SKIQENALPLML--AEPPQNLI----AQSQSGTGKTAAFVLAM 85 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--SSSCCCEE----EECCTTSCHHHHHHHHH
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCCCeEE----EECCCCchHHHHHHHHH
Confidence 3457899999999999999999999999 999999999999 76 9999 99999999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc
Q psy10677 209 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ 287 (317)
Q Consensus 209 l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~ 287 (317)
++++... ..++++||++||++||.|+++.++++.... ++++....|+.........-..|+|+||++|.+++..
T Consensus 86 ~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~ 160 (412)
T 3fht_A 86 LSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK 160 (412)
T ss_dssp HHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTT
T ss_pred HHHhhhc-----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHh
Confidence 9988653 346799999999999999999999998864 6888888888776544433345999999999999866
Q ss_pred ------CCCCCCCCchhHHHhhhcCCcHHH
Q psy10677 288 ------NDAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 288 ------~~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
..+++.++||+|.+++..+|....
T Consensus 161 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~ 190 (412)
T 3fht_A 161 LKFIDPKKIKVFVLDEADVMIATQGHQDQS 190 (412)
T ss_dssp SCSSCGGGCCEEEEETHHHHHSTTTTHHHH
T ss_pred cCCcChhhCcEEEEeCHHHHhhcCCcHHHH
Confidence 357788999999999856665544
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-26 Score=223.70 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=138.2
Q ss_pred cccccCCC-CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETN-IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~-l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+|.+.+ |++.++++|.+.||..| +|+|.++||.++...|+|++ ++||||||||+||++|+++++
T Consensus 70 ~~~l~~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~l~~~~~~~l----v~apTGsGKTl~~~lpil~~l 136 (563)
T 3i5x_A 70 LDSLLEEGVLDKEIHKAITRMEFPGL---------TPVQQKTIKPILSSEDHDVI----ARAKTGTGKTFAFLIPIFQHL 136 (563)
T ss_dssp HHHHHHTTSSCHHHHHHHHTTCCSSC---------CHHHHHHHHHHHSSSSEEEE----EECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHhcCCCCeEE----EECCCCCCccHHHHHHHHHHH
Confidence 33443333 99999999999999999 99999999999843468999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC----CCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHH
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIY 284 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~----~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~ 284 (317)
...+. ....++++|||+||++||.|+++.++++... ..+.+..++||.+...+...+. .|+||||++|.++
T Consensus 137 ~~~~~-~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 137 INTKF-DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHTTT-SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred Hhccc-cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHH
Confidence 87542 2234689999999999999999999998653 2577899999999887776553 3999999999988
Q ss_pred Hhc------CCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 285 LQQ------NDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 285 l~~------~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
+.. ..+++.++||||+|++ .||.++...
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~-~~f~~~~~~ 249 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLE-IGFRDDLET 249 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTS-TTTHHHHHH
T ss_pred HHhccccccccceEEEEeCHHHHhc-cchHHHHHH
Confidence 765 4688899999999999 999887654
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=212.18 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=137.9
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+|++++|++.++++|.+.||..| +|+|.++++.++ +|+|++ ++||||||||++|++|++.++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----i~a~TGsGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKP---------SPIQEEAIPVAI--TGRDIL----ARAKNGTGKTAAFVIPTLEKV 83 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCTTSCHHHHHHHHHHHHC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--cCCCEE----EECCCCcHHHHHHHHHHHHHH
Confidence 44689999999999999999999999 999999999999 999999 999999999999999999987
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~- 288 (317)
... ..++++||++||++|+.|+++.++++....++++..++||.....+...+.. |+|+||++|.+++..+
T Consensus 84 ~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~ 158 (400)
T 1s2m_A 84 KPK-----LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV 158 (400)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred hhc-----cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC
Confidence 542 2467999999999999999999999999889999999999998877665543 8999999999988875
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHH
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~ 310 (317)
.+++.++||||++.+ .+|...
T Consensus 159 ~~~~~~~~vIiDEaH~~~~-~~~~~~ 183 (400)
T 1s2m_A 159 ADLSDCSLFIMDEADKMLS-RDFKTI 183 (400)
T ss_dssp SCCTTCCEEEEESHHHHSS-HHHHHH
T ss_pred cccccCCEEEEeCchHhhh-hchHHH
Confidence 467888999999887 455443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=209.57 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=136.9
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|++.||..| +|+|.++++.++ .|+|++ +.||||||||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~~~~~~~l~~ 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVFVLATLQQLEP 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSC---------CHHHHHHHHHHT--TTCCEE----EECSSCSSHHHHHHHHHHHHCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--cCCcEE----EECCCCCcHHHHHHHHHHHhhcc
Confidence 579999999999999999999999 999999999999 999999 99999999999999999988754
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcC-
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQN- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~- 288 (317)
. ..++++||++||++|+.|+++.++++.... ++++..++||.+...+...+. .|+|+||+++.+++..+
T Consensus 73 ~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~ 147 (391)
T 1xti_A 73 V-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 147 (391)
T ss_dssp C-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred c-----CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 3 346799999999999999999999998876 899999999999877766553 49999999999988775
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
.+++.++||||.+.+..+|....
T Consensus 148 ~~~~~~~~vViDEaH~~~~~~~~~~~~ 174 (391)
T 1xti_A 148 LNLKHIKHFILDECDKMLEQLDMRRDV 174 (391)
T ss_dssp SCCTTCSEEEECSHHHHTSSHHHHHHH
T ss_pred ccccccCEEEEeCHHHHhhccchHHHH
Confidence 45678899999998744554433
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-25 Score=203.24 Aligned_cols=158 Identities=20% Similarity=0.281 Sum_probs=140.0
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
..+|++++|++.++++|++.||..| +|+|.++++.++ +| ++++ +.||||||||++|++|++..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~~l----~~~~TGsGKT~~~~~~~~~~~ 69 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKP---------TDIQMKVIPLFL--NDEYNIV----AQARTGSGKTASFAIPLIELV 69 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--HTCSEEE----EECCSSSSHHHHHHHHHHHHS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCCEE----EECCCCChHHHHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999 77 7999 999999999999999999877
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcC--
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~-- 288 (317)
.. ..++++||++||++|+.|+++.++++....++++..++||.+...+...+.. |+|+||+++.+++..+
T Consensus 70 ~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~ 143 (367)
T 1hv8_A 70 NE------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTL 143 (367)
T ss_dssp CS------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCS
T ss_pred cc------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCc
Confidence 54 2478999999999999999999999998888999999999998777665544 9999999999998875
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+++.++||||.+.+ .+|......
T Consensus 144 ~~~~~~~iIiDEah~~~~-~~~~~~~~~ 170 (367)
T 1hv8_A 144 NLKNVKYFILDEADEMLN-MGFIKDVEK 170 (367)
T ss_dssp CTTSCCEEEEETHHHHHT-TTTHHHHHH
T ss_pred ccccCCEEEEeCchHhhh-hchHHHHHH
Confidence 456788999999998 787665443
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-25 Score=206.52 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=134.6
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPALY 210 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~l~ 210 (317)
...+|++++|++.++++|.+.||..| +|+|.++++.++ .| +|++ ++||||||||++|++|++.
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~~~l----v~a~TGsGKT~~~~~~~~~ 67 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKP---------SKIQERALPLLL--HNPPRNMI----AQSQSGTGKTAAFSLTMLT 67 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--CSSCCCEE----EECCTTSCHHHHHHHHHHH
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCCeEE----EECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999999999 999999999999 77 9999 9999999999999999999
Q ss_pred HHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC--
Q psy10677 211 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 211 ~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-- 288 (317)
++... ..++++||++||++|+.|+++.++++....++.+...+|+....... .-..|+|+||+++.+++..+
T Consensus 68 ~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~ 141 (395)
T 3pey_A 68 RVNPE-----DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ-INAQVIVGTPGTVLDLMRRKLM 141 (395)
T ss_dssp HCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSC-BCCSEEEECHHHHHHHHHTTCB
T ss_pred HhccC-----CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhcc-CCCCEEEEcHHHHHHHHHcCCc
Confidence 87643 35789999999999999999999999998889988888876543221 12349999999999998765
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHH
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~ 310 (317)
.+++.++||||.+.+..+|...
T Consensus 142 ~~~~~~~iIiDEah~~~~~~~~~~~ 166 (395)
T 3pey_A 142 QLQKIKIFVLDEADNMLDQQGLGDQ 166 (395)
T ss_dssp CCTTCCEEEEETHHHHHHSTTHHHH
T ss_pred ccccCCEEEEEChhhhcCccccHHH
Confidence 5678899999999985565443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-25 Score=223.14 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=131.5
Q ss_pred ccCCCCHHHHHHHHHHCCcee-ecCCCCCCcccccCCCCChhhh---ccc-CcCCCCCCCcCCCCCCCCchhhhhccccc
Q psy10677 105 HLQGKTKEEIDSFRKEHNITL-IGQNIPKPVKTLDETNIPSYIL---GPM-KPKTTNNENNHNKNKKCGDKESKNWTIPL 179 (317)
Q Consensus 105 ~i~~~~~~~i~~~~~~~~i~~-~g~~~~~~~~~f~~~~l~~~l~---~~l-~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l 179 (317)
.+..++++++.....+.+..+ .|. +++++ |++.+. ++. +..|| .| |++|..++|.++
T Consensus 35 ~~~~lsd~el~~~t~~~~~~~~~g~-------~ld~~-l~ea~a~vrea~~r~lG~-~p---------t~VQ~~~ip~ll 96 (844)
T 1tf5_A 35 DYENLSDDALKHKTIEFKERLEKGA-------TTDDL-LVEAFAVVREASRRVTGM-FP---------FKVQLMGGVALH 96 (844)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTTC-------CHHHH-HHHHHHHHHHHHHHHHSC-CC---------CHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCC-------ChHHH-HHHHHHHHHHHHHHHcCC-CC---------cHHHHHhhHHHh
Confidence 367788899977666655443 232 23332 222211 111 14799 89 999999999999
Q ss_pred cccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 180 NFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 180 ~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
+|+ + +.|+||||||+||.+|++.+.. .++.++||+||||||.|+++++..+.+.+|+++.+++|
T Consensus 97 --~G~--I----aea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~g 160 (844)
T 1tf5_A 97 --DGN--I----AEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLN 160 (844)
T ss_dssp --TTS--E----EECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred --CCC--E----EEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 999 8 9999999999999999986543 25789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHc-cCcEEECcHHH-HHHHhc-----------CCCCCCCCchhHHHh-hhcCCc
Q psy10677 260 GTSKMYQVILL-RILTSATNTSL-GIYLQQ-----------NDAHSPCLSVWRRLQ-DILGLT 308 (317)
Q Consensus 260 g~~~~~~~~~~-~~ilv~TP~~l-~~~l~~-----------~~~~~~~lde~d~l~-~~~gf~ 308 (317)
|.+...+.... .+|+||||||| .|+|.. ..+++.+|||||+|| | +++.
T Consensus 161 g~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiD-ea~t 222 (844)
T 1tf5_A 161 SMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILID-EART 222 (844)
T ss_dssp TSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTT-TTTC
T ss_pred CCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhh-cccc
Confidence 99987665544 34999999999 566543 356789999999999 7 7654
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=192.02 Aligned_cols=145 Identities=23% Similarity=0.281 Sum_probs=129.8
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|++.+.++|++.||..| +|+|.++++.++ +|++++ +.||||||||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l---------~~~Q~~~i~~i~--~~~~~l----v~~~TGsGKT~~~~~~~~~~---------- 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNF---------TEVQSKTIPLML--QGKNVV----VRAKTGSGKTAAYAIPILEL---------- 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHHHHHH----------
T ss_pred CCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCCEE----EEcCCCCcHHHHHHHHHHhh----------
Confidence 57899999999999999 999999999999 999999 99999999999999999863
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcC-----CCCCCC
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQN-----DAHSPC 294 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~-----~~~~~~ 294 (317)
+.++||++||++|+.|+++.++++....++++..++||.+...+...+.. |+|+||++|.+++..+ .+++.+
T Consensus 56 -~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 56 -GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVI 134 (337)
T ss_dssp -TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEE
T ss_pred -cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEE
Confidence 46899999999999999999999999889999999999998877766654 9999999999998865 456788
Q ss_pred CchhHHHhhhcCCcHHHHh
Q psy10677 295 LSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 295 lde~d~l~~~~gf~~~~~~ 313 (317)
+||||.+.+ .+|......
T Consensus 135 iDEah~~~~-~~~~~~~~~ 152 (337)
T 2z0m_A 135 IDEADLMFE-MGFIDDIKI 152 (337)
T ss_dssp EESHHHHHH-TTCHHHHHH
T ss_pred EEChHHhhc-cccHHHHHH
Confidence 999999998 888665443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=197.39 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=118.5
Q ss_pred hhcccCcC-CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCc
Q psy10677 146 ILGPMKPK-TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGP 224 (317)
Q Consensus 146 l~~~l~~~-g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~ 224 (317)
+.+.+++. || .| +|+|.+++|.++ +|+|++ ++||||||||++|++|++..+. .++
T Consensus 10 ~~~~l~~~~~~-~~---------~~~Q~~~i~~i~--~~~~~l----v~apTGsGKT~~~l~~~~~~~~--------~~~ 65 (414)
T 3oiy_A 10 FRSFFKKKFGK-DL---------TGYQRLWAKRIV--QGKSFT----MVAPTGVGKTTFGMMTALWLAR--------KGK 65 (414)
T ss_dssp HHHHHHHHHSS-CC---------CHHHHHHHHHHT--TTCCEE----CCSCSSSSHHHHHHHHHHHHHT--------TTC
T ss_pred HHHHHHHhcCC-CC---------CHHHHHHHHHHh--cCCCEE----EEeCCCCCHHHHHHHHHHHHhc--------CCC
Confidence 34445543 55 68 999999999999 999999 9999999999999999988762 368
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH---HHHHHHc----cCcEEECcHHHHHHHh---cCCCCCCC
Q psy10677 225 IALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK---MYQVILL----RILTSATNTSLGIYLQ---QNDAHSPC 294 (317)
Q Consensus 225 ~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~---~~~~~~~----~~ilv~TP~~l~~~l~---~~~~~~~~ 294 (317)
++||++||++||.|+++.+++++. .++++..++||.+. ..+...+ ..|+|+||++|.+++. ...+++.+
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEE
Confidence 999999999999999999999988 89999999999998 4444444 3499999999976544 46889999
Q ss_pred Cchh----------HHHhhhcCCcHH
Q psy10677 295 LSVW----------RRLQDILGLTEE 310 (317)
Q Consensus 295 lde~----------d~l~~~~gf~~~ 310 (317)
+||| |+|++.+||.++
T Consensus 145 iDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 145 VDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp ESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred EeChHhhhhccchhhhHHhhcCCcHH
Confidence 9999 777777899887
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-23 Score=208.83 Aligned_cols=125 Identities=17% Similarity=0.025 Sum_probs=108.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..++|.++ +|+ + +.++||||||+||++|++.+.. .+++++||+||||||.|+++++..+.
T Consensus 76 ~~VQ~~~i~~ll--~G~--I----aem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 76 FDVQLLGGMVLN--ERC--I----AEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp CHHHHHHHHHHH--SSE--E----EECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred ChHHHhhccccc--CCe--e----eeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 999999999999 998 8 8999999999999999997653 25789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHc-cCcEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhhhcCCc
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILL-RILTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~-~~ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~~~gf~ 308 (317)
+.+++++++++||.+...+.... .+|+||||||| .|+|..+ .+.+.+|||||+||.-.|+.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred HhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 99999999999999976554433 34999999999 6887643 56788999999999326653
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=202.82 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=127.0
Q ss_pred cCCCCHHHH----HHHHHHCCceeecCCCCCCcccccCCCCChhh---hcccC-cCCCCCCCcCCCCCCCCchhhhhccc
Q psy10677 106 LQGKTKEEI----DSFRKEHNITLIGQNIPKPVKTLDETNIPSYI---LGPMK-PKTTNNENNHNKNKKCGDKESKNWTI 177 (317)
Q Consensus 106 i~~~~~~~i----~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l---~~~l~-~~g~~~p~~~~~~~~~t~iQ~~~ip~ 177 (317)
+..++++++ ..|+......+.|. +++++ ||+.+ .++.+ ..|+ +| |++|..++|.
T Consensus 61 ~~~Lsd~eL~~kt~efk~rl~~~~~ge-------~ld~~-lpeafA~vrEa~~R~lG~-rP---------~~VQ~~~ip~ 122 (922)
T 1nkt_A 61 VEKLTDAELRAKTDEFKRRLADQKNPE-------TLDDL-LPEAFAVAREAAWRVLDQ-RP---------FDVQVMGAAA 122 (922)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHCSSSCC-------CHHHH-HHHHHHHHHHHHHHHHSC-CC---------CHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcccCC-------CHHHH-HHHHHHHHHHHHHHHcCC-CC---------CHHHHHHHHh
Confidence 456667766 56665543222232 34443 33332 12222 3688 89 9999999999
Q ss_pred cccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEE
Q psy10677 178 PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACL 257 (317)
Q Consensus 178 ~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~ 257 (317)
++ +|+ + +.++||+|||++|.+|++..... +.+++||+||++||.|+++++..+.+.+|+++.++
T Consensus 123 Ll--~G~--I----aem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 123 LH--LGN--V----AEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp HH--TTE--E----EECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred Hh--cCC--E----EEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99 998 8 99999999999999999765542 46899999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHc-cCcEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 258 YGGTSKMYQVILL-RILTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 258 ~gg~~~~~~~~~~-~~ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+||.+...+.... .+|++||||+| .|+|..+ .+++.+|||||+||.
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 9999976655544 34999999999 6777654 577889999999993
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=197.42 Aligned_cols=130 Identities=15% Similarity=0.046 Sum_probs=112.4
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+ .| |++|..++|.++ +|+ + +.++||||||++|.+|++..... |.+++|++||
T Consensus 76 lG~-~P---------t~VQ~~~ip~Ll--qG~--I----aeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPT 129 (997)
T 2ipc_A 76 LGM-RH---------FDVQLIGGAVLH--EGK--I----AEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVN 129 (997)
T ss_dssp TCC-CC---------CHHHHHHHHHHH--TTS--E----EECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESS
T ss_pred hCC-CC---------cHHHHhhccccc--CCc--e----eeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCC
Confidence 688 89 999999999999 998 8 89999999999999999755442 4589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-CcEEECcHHH-HHHHhcC--------------CCCCCCCc
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-ILTSATNTSL-GIYLQQN--------------DAHSPCLS 296 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-~ilv~TP~~l-~~~l~~~--------------~~~~~~ld 296 (317)
++||.|+++++..+.+.+|+++.+++||.+...+..... +|+|||||+| .|+|..+ .+.+.++|
T Consensus 130 reLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIID 209 (997)
T 2ipc_A 130 DYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIID 209 (997)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEe
Confidence 999999999999999999999999999999766555443 3999999999 7888765 56778899
Q ss_pred hhHHHhhhcCCc
Q psy10677 297 VWRRLQDILGLT 308 (317)
Q Consensus 297 e~d~l~~~~gf~ 308 (317)
|+|+||.--+..
T Consensus 210 EaDsmLiDeart 221 (997)
T 2ipc_A 210 EVDSILIDEART 221 (997)
T ss_dssp THHHHTTSSTTS
T ss_pred chHHHHHhCCCC
Confidence 999998535544
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=205.74 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=113.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
||+|.+++|.++ .|+|++ ++||||||||++|++|++..+. .++++|||+||||||.|+++.+++++
T Consensus 80 t~iQ~~ai~~il--~g~dvl----v~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 80 TGYQRLWAKRIV--QGKSFT----MVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp CHHHHHHHHHHT--TTCCEE----ECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHH--cCCCEE----EEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 999999999999 999999 9999999999999999888762 36899999999999999999999988
Q ss_pred cCCCcEEEEEECCCCH---HHHHHHcc----CcEEECcHHHHHHH---hcCCCCCCCCchh----------HHHhhhcCC
Q psy10677 248 RTMRIRHACLYGGTSK---MYQVILLR----ILTSATNTSLGIYL---QQNDAHSPCLSVW----------RRLQDILGL 307 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~---~~~~~~~~----~ilv~TP~~l~~~l---~~~~~~~~~lde~----------d~l~~~~gf 307 (317)
..+++++.++||.+. ..+...+. +|+|||||+|.+++ ..+.+++.++||| |+|++.+||
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 779999999999988 55555553 38999999997664 4578999999999 889998999
Q ss_pred cHH
Q psy10677 308 TEE 310 (317)
Q Consensus 308 ~~~ 310 (317)
.++
T Consensus 225 ~~~ 227 (1104)
T 4ddu_A 225 PEE 227 (1104)
T ss_dssp CHH
T ss_pred CHH
Confidence 988
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=192.61 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=126.9
Q ss_pred cccccCCCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+|++++|++.+.+.|++ .||..| +|+|.++|+.++ +|+|++ +++|||||||+||++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~---------r~~Q~~~i~~il--~g~d~l----v~apTGsGKTl~~~lp~l~~- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQF---------RPGQEEIIDTVL--SGRDCL----VVMPTGGGKSLCYQIPALLL- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSC---------CTTHHHHHHHHH--TTCCEE----EECSCHHHHHHHHHHHHHHS-
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCC---------CHHHHHHHHHHH--cCCCEE----EECCCCcHHHHHHHHHHHHh-
Confidence 4689999999999999998 799999 999999999999 999999 99999999999999999842
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHH---
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLG--- 282 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~--- 282 (317)
...+||++|+++|+.|+.+.++.+ ++++..+.|+.+..+..... .+++++||++|.
T Consensus 65 ----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~ 130 (523)
T 1oyw_A 65 ----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN 130 (523)
T ss_dssp ----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT
T ss_pred ----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH
Confidence 257999999999999999988874 78888999988876554322 238999999985
Q ss_pred --HHHhcCCCCCCCCchhHHHhhhcC--CcHHHH
Q psy10677 283 --IYLQQNDAHSPCLSVWRRLQDILG--LTEETC 312 (317)
Q Consensus 283 --~~l~~~~~~~~~lde~d~l~~~~g--f~~~~~ 312 (317)
+.+....+.+.++||||.+.+ .| |.++..
T Consensus 131 ~~~~l~~~~~~~vViDEaH~i~~-~g~~fr~~~~ 163 (523)
T 1oyw_A 131 FLEHLAHWNPVLLAVDEAHCISQ-WGHDFRPEYA 163 (523)
T ss_dssp HHHHHTTSCEEEEEESSGGGGCT-TSSCCCHHHH
T ss_pred HHHHHhhCCCCEEEEeCccccCc-CCCccHHHHH
Confidence 556668899999999999988 76 666543
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-21 Score=197.92 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=131.2
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
...+|++++|++.+.+.+++.||..| +++|.++++. +. +|++++ ++||||||||++|.+|+++.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l---------~~~Q~~~i~~~~~--~~~~~l----v~apTGsGKT~~~~l~il~~ 70 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKL---------NPPQTEAVKKGLL--EGNRLL----LTSPTGSGKTLIAEMGIISF 70 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBC---------CHHHHHHHHTTTT--TTCCEE----EECCTTSCHHHHHHHHHHHH
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCC---------CHHHHHHHHHHhc--CCCcEE----EEcCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999999 9999999999 77 899999 99999999999999999998
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC---
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~--- 288 (317)
+... +.+++|++|+|+||.|+++.++.+.. .|+++..++|+....+....-..|+|+|||++..++..+
T Consensus 71 ~~~~-------~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 142 (715)
T 2va8_A 71 LLKN-------GGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEW 142 (715)
T ss_dssp HHHS-------CSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGG
T ss_pred HHHC-------CCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhH
Confidence 8742 57999999999999999999965544 489999999988765543333349999999999988875
Q ss_pred --CCCCCCCchhHHHhhhcCCcHH
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~ 310 (317)
.+++.++||++.+.+ .++...
T Consensus 143 l~~~~~vIiDE~H~l~~-~~~~~~ 165 (715)
T 2va8_A 143 LNEVNYFVLDELHYLND-PERGPV 165 (715)
T ss_dssp GGGEEEEEECSGGGGGC-TTTHHH
T ss_pred hhccCEEEEechhhcCC-cccchH
Confidence 456889999999876 555443
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-21 Score=190.83 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=123.8
Q ss_pred ccCCCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 137 LDETNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 137 f~~~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
++++++++.+.+.|++ .||..| +|+|.++|+.++ +|+|++ +++|||+|||+||++|++..
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~---------rp~Q~~~i~~il--~g~d~l----v~~pTGsGKTl~~~lpal~~---- 83 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKF---------RPLQLETINVTM--AGKEVF----LVMPTGGGKSLCYQLPALCS---- 83 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSC---------CTTHHHHHHHHH--TTCCEE----EECCTTSCTTHHHHHHHHTS----
T ss_pred cccCCCCHHHHHHHHHHhCCCCC---------CHHHHHHHHHHH--cCCCEE----EEECCCChHHHHHHHHHHHc----
Confidence 4468899999999998 599999 999999999999 999999 99999999999999999741
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---------cCcEEECcHHHH----
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---------RILTSATNTSLG---- 282 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---------~~ilv~TP~~l~---- 282 (317)
...+||++||++|+.|+.+.++++ ++++..++|+.+..++...+ ..|+|+||++|.
T Consensus 84 -------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~ 152 (591)
T 2v1x_A 84 -------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM 152 (591)
T ss_dssp -------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH
T ss_pred -------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH
Confidence 358999999999999999999887 78899999999887654322 228999999873
Q ss_pred --HHHh----cCCCCCCCCchhHHHhhhcC--CcHHHHh
Q psy10677 283 --IYLQ----QNDAHSPCLSVWRRLQDILG--LTEETCV 313 (317)
Q Consensus 283 --~~l~----~~~~~~~~lde~d~l~~~~g--f~~~~~~ 313 (317)
+.+. .+.+.+.++||||.+.+ .| |.++...
T Consensus 153 ~~~~l~~~~~~~~i~~iViDEAH~is~-~g~dfr~~~~~ 190 (591)
T 2v1x_A 153 FMSRLEKAYEARRFTRIAVDEVHCCSQ-WGHDFRPDYKA 190 (591)
T ss_dssp HHHHHHHHHHTTCEEEEEEETGGGGST-TCTTCCGGGGG
T ss_pred HHHHHHhhhhccCCcEEEEECcccccc-cccccHHHHHH
Confidence 3333 35889999999999998 88 8777543
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-21 Score=198.95 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=129.7
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|++++|++.+.+.+++.||..| +++|.++++. +. +|++++ ++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l---------~~~Q~~~i~~~~~--~~~~~l----v~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESF---------YPPQAEALKSGIL--EGKNAL----ISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBC---------CHHHHHHHTTTGG--GTCEEE----EECCGGGCHHHHHHHHHHHHHHH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHhc--CCCcEE----EEcCCccHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999 9999999998 78 899999 99999999999999999998874
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----C
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----D 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~ 289 (317)
. +.+++|++|||+||.|+++.++++.. .|+++..++|+.+.......-..|+|+||+++..++..+ .
T Consensus 67 ~-------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~ 138 (720)
T 2zj8_A 67 Q-------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKD 138 (720)
T ss_dssp H-------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGG
T ss_pred C-------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhc
Confidence 2 57999999999999999999976655 489999999988765443333349999999999888764 4
Q ss_pred CCCCCCchhHHHhhhcCCcHH
Q psy10677 290 AHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~~ 310 (317)
+++.++||++.+.+ .++...
T Consensus 139 ~~~vIiDE~H~l~~-~~r~~~ 158 (720)
T 2zj8_A 139 VKILVADEIHLIGS-RDRGAT 158 (720)
T ss_dssp EEEEEEETGGGGGC-TTTHHH
T ss_pred CCEEEEECCcccCC-CcccHH
Confidence 56889999999877 555443
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-21 Score=193.89 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=113.5
Q ss_pred hcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceE
Q psy10677 147 LGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIA 226 (317)
Q Consensus 147 ~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~a 226 (317)
..+|...||..| +++|.++++.++ .|+|++ +++|||||||++|++|+++++...+. ..++++
T Consensus 3 ~~~l~~~g~~~l---------r~~Q~~~i~~~l--~g~~~i----v~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~ 64 (696)
T 2ykg_A 3 VSDTNLYSPFKP---------RNYQLELALPAM--KGKNTI----ICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKV 64 (696)
T ss_dssp ----CTTC--CC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCE
T ss_pred CCcccccCCCCc---------cHHHHHHHHHHH--cCCCEE----EEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeE
Confidence 456788899999 999999999999 999999 99999999999999999999876531 234789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCC------CCCCCCch
Q psy10677 227 LVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQND------AHSPCLSV 297 (317)
Q Consensus 227 lil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~------~~~~~lde 297 (317)
||++||++|+.|+.+.++++....++++..++||.+...+...+ .+|+|+|||+|.+++..+. +++.++||
T Consensus 65 lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 65 VFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 99999999999999999999988899999999998654333322 3499999999999998764 36888999
Q ss_pred hHHH
Q psy10677 298 WRRL 301 (317)
Q Consensus 298 ~d~l 301 (317)
||++
T Consensus 145 aH~~ 148 (696)
T 2ykg_A 145 CHNT 148 (696)
T ss_dssp GGGC
T ss_pred CCcc
Confidence 9994
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-21 Score=188.40 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=109.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+|.++++.++ .|+|++ +++|||||||++|++|+++.+...+ ...++++||++||++|+.|+++.++++
T Consensus 8 ~~~~Q~~~i~~~~--~~~~~l----~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 8 ARSYQIELAQPAI--NGKNAL----ICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp CCHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCEE----EEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3999999999999 999999 9999999999999999999987653 233789999999999999999999999
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCC------CCCCCCchhHHHhhhcC
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQND------AHSPCLSVWRRLQDILG 306 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~------~~~~~lde~d~l~~~~g 306 (317)
....++++..++||.+...+...+ ..|+|+||++|.+++..+. +++.++||||++.+ .+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~-~~ 146 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG-NH 146 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCST-TS
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCC-cc
Confidence 998899999999999766544333 3499999999999998764 46889999999987 44
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=187.33 Aligned_cols=128 Identities=16% Similarity=0.073 Sum_probs=112.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+|.++++.++ .|+|++ +++|||||||++|++|+++.+...+ ...++++||++||++|+.|+++.++++
T Consensus 5 ~~~~Q~~~i~~~~--~~~~~l----~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 5 PRNYQLELALPAK--KGKNTI----ICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh--CCCCEE----EEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3999999999999 999999 9999999999999999999998653 234789999999999999999999999
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCC------CCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQND------AHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~------~~~~~lde~d~l~~ 303 (317)
....++++..++||.+...+...+ ..|+|+||++|.+++..+. +++.++||||++.+
T Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 76 FERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCST
T ss_pred hccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCC
Confidence 998899999999999766543333 3499999999999998764 46889999999987
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-22 Score=199.69 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=125.5
Q ss_pred cccCCC--CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 136 TLDETN--IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 136 ~f~~~~--l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+|++++ |++.+.+.+++.||..| +|+|.++++.++ +|+|++ ++||||||||++|.+|+++.+.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l---------~~~Q~~~i~~i~--~~~~~l----v~apTGsGKT~~~~l~il~~~~ 66 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEEL---------FPPQAEAVEKVF--SGKNLL----LAMPTAAGKTLLAEMAMVREAI 66 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CC---------CCCCHHHHHHHT--TCSCEE----EECSSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCC---------CHHHHHHHHHHh--CCCcEE----EEcCCccHHHHHHHHHHHHHHH
Confidence 688998 99999999999999999 999999999999 999999 9999999999999999999876
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----
Q psy10677 214 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN----- 288 (317)
Q Consensus 214 ~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~----- 288 (317)
. +.+++|++|||+||.|+++.++.+.. .|+++..++|+....+....-.+|+|+|||++..++..+
T Consensus 67 ~--------~~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~ 137 (702)
T 2p6r_A 67 K--------GGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIK 137 (702)
T ss_dssp T--------TCCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGG
T ss_pred h--------CCcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHh
Confidence 3 46899999999999999999975544 589999999988765432222349999999999998875
Q ss_pred CCCCCCCchhHHHhhhcCCcH
Q psy10677 289 DAHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 289 ~~~~~~lde~d~l~~~~gf~~ 309 (317)
.+++.++||++.+.+ .++..
T Consensus 138 ~~~~vIiDE~H~l~~-~~r~~ 157 (702)
T 2p6r_A 138 AVSCLVVDEIHLLDS-EKRGA 157 (702)
T ss_dssp GCCEEEETTGGGGGC-TTTHH
T ss_pred hcCEEEEeeeeecCC-CCccc
Confidence 457889999999887 55544
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-20 Score=192.48 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=110.2
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+..| +|+|.++++.++ .|+|++ +++|||||||++|++|++..+...+ ...++++|||+||
T Consensus 244 ~g~~~l---------~~~Q~~~i~~~l--~~~~~l----l~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt 305 (797)
T 4a2q_A 244 YETKKA---------RSYQIELAQPAI--NGKNAL----ICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATK 305 (797)
T ss_dssp ----CC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSS
T ss_pred cCCCCC---------CHHHHHHHHHHH--hCCCEE----EEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCC
Confidence 467778 999999999999 999999 9999999999999999999998652 2347899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCCC------CCCCCchhHHHhh
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQNDA------HSPCLSVWRRLQD 303 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~~------~~~~lde~d~l~~ 303 (317)
++|+.|+++.++++....++++..++||.+...+...+ ..|+|+||++|.+++..+.+ ++.++||||++.+
T Consensus 306 ~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (797)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCST
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCC
Confidence 99999999999999998899999999999776544433 34999999999999988755 7889999999876
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-20 Score=197.93 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=108.5
Q ss_pred chhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 169 ~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
++|.++||.++ +|+|++ ++||||||||+ |.+|++.++.. .++++|||+|||+||.|+++.+++++.
T Consensus 59 ~iQ~~ai~~il--~g~dvl----v~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 59 AIQKMWAKRIL--RKESFA----ATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHHHHHHHHHH--TTCCEE----CCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCEE----EEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 89999999999 999999 99999999998 99999998875 368999999999999999999999999
Q ss_pred CCCc----EEEEEECCCCHHHHH---HHc--cCcEEECcHHHHHHHhc-CCCCCCCCchhHHHhh
Q psy10677 249 TMRI----RHACLYGGTSKMYQV---ILL--RILTSATNTSLGIYLQQ-NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 249 ~~~~----~~~~~~gg~~~~~~~---~~~--~~ilv~TP~~l~~~l~~-~~~~~~~lde~d~l~~ 303 (317)
.+++ ++.+++||.+...+. ..+ .+|+|||||+|.+++.. +.+++.++||||+|++
T Consensus 125 ~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 125 KAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp TTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT
T ss_pred hcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh
Confidence 8888 999999999987743 222 34999999999998874 5777999999999998
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-20 Score=199.16 Aligned_cols=146 Identities=8% Similarity=-0.088 Sum_probs=125.4
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|+.+++++.+...+...++..| +++|.++|+.++ .|+|++ ++||||||||++|.+|++..+..
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~l---------tp~Q~~AI~~i~--~g~dvL----V~ApTGSGKTlva~l~i~~~l~~ 226 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTL---------DPFQDTAISCID--RGESVL----VSAHTSAGKTVVAEYAIAQSLKN 226 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCC---------CHHHHHHHHHHT--TTCCEE----EECCSSSHHHHHHHHHHHHHHHT
T ss_pred CCcccCCCChhhhHHHHHhCCCCC---------CHHHHHHHHHHH--cCCCEE----EECCCCCChHHHHHHHHHHHHhc
Confidence 478889999999999988877788 999999999999 999999 99999999999999999998853
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----C
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----D 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~ 289 (317)
+.+++|++|||+||.|+++.+.++.. .+..++|+.+.... ..|+|+|||+|.+++..+ .
T Consensus 227 --------g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~~~----~~IlV~Tpe~L~~~L~~~~~~l~~ 290 (1108)
T 3l9o_A 227 --------KQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITINPD----AGCLVMTTEILRSMLYRGSEVMRE 290 (1108)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCCCS----CSEEEEEHHHHHHHHHHCSSHHHH
T ss_pred --------CCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccCCC----CCEEEeChHHHHHHHHcCcccccc
Confidence 57999999999999999999999876 56778888874321 349999999999998876 4
Q ss_pred CCCCCCchhHHHhhhcCCcHHHH
Q psy10677 290 AHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
+.++++||||+|.+ .+|.....
T Consensus 291 l~lVVIDEaH~l~d-~~rg~~~e 312 (1108)
T 3l9o_A 291 VAWVIFDEVHYMRD-KERGVVWE 312 (1108)
T ss_dssp EEEEEEETGGGTTS-HHHHHHHH
T ss_pred CCEEEEhhhhhccc-cchHHHHH
Confidence 57899999999988 56554433
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-20 Score=163.27 Aligned_cols=134 Identities=16% Similarity=0.021 Sum_probs=101.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHH-HHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQ-IQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Q-i~~~~~~l 246 (317)
+++|.++++.++ +|++++ +.+|||||||++|++|++..+..... ...++++||++||++|+.| +.+.++.+
T Consensus 35 ~~~Q~~~i~~~~--~~~~~l----i~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 35 RPYQMEVAQPAL--EGKNII----ICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CHHHHHHHHHHH--TTCCEE----EECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHh--cCCCEE----EEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999 999999 99999999999999999988765321 1246799999999999999 78889988
Q ss_pred hcCCCcEEEEEECCCCHHHHHH---HccCcEEECcHHHHHHHhcC-----------CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVI---LLRILTSATNTSLGIYLQQN-----------DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~---~~~~ilv~TP~~l~~~l~~~-----------~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
... ++++..++|+.+...+.. .-..|+|+||+++.+++... .+++.++||||.+.+ .++....
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~-~~~~~~~ 183 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNI 183 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc-CCcHHHH
Confidence 876 788888888876543222 22459999999999988763 557889999999987 6666554
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=197.80 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=118.9
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|.+...+++...+|..+ +|+|+++++.+++ ++.|++ ++||||||||++|.+|+++.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~f---------npiQ~q~~~~l~~-~~~nvl----v~APTGSGKTliaelail~~l~~~------ 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFF---------NPIQTQVFNTVYN-SDDNVF----VGAPTGSGKTICAEFAILRMLLQS------ 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBC---------CHHHHHHHHHHHS-CCSCEE----EECCTTSCCHHHHHHHHHHHHHHC------
T ss_pred ccCHHHHHHHHhcCCCC---------CHHHHHHHHHHhc-CCCcEE----EEeCCCCCchHHHHHHHHHHHHhC------
Confidence 34455666777778877 9999999999984 667899 999999999999999999999864
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHH-HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-------CCCCCC
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISI-FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-------NDAHSP 293 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~-l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-------~~~~~~ 293 (317)
.+.++||++|||+||.|+++.+++ |.+.+|+++..++|+++.+.....-.+|+||||+++..++.+ ..+.+.
T Consensus 971 ~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lv 1050 (1724)
T 4f92_B 971 SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF 1050 (1724)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEE
Confidence 356899999999999999999975 566689999999999877655544456999999999777754 268899
Q ss_pred CCchhHHHhh
Q psy10677 294 CLSVWRRLQD 303 (317)
Q Consensus 294 ~lde~d~l~~ 303 (317)
++||+|.|.|
T Consensus 1051 ViDE~H~l~d 1060 (1724)
T 4f92_B 1051 VVDEVHLIGG 1060 (1724)
T ss_dssp EECCGGGGGS
T ss_pred EeechhhcCC
Confidence 9999998766
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-20 Score=190.23 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=108.9
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+..| +++|.++++.++ .|+|++ +++|||||||++|++|++..+...+ ...++++|||+||
T Consensus 244 ~~~~~~---------r~~Q~~ai~~il--~g~~~l----l~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt 305 (936)
T 4a2w_A 244 YETKKA---------RSYQIELAQPAI--NGKNAL----ICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATK 305 (936)
T ss_dssp ----CC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSS
T ss_pred cCCCCC---------CHHHHHHHHHHH--cCCCEE----EEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCC
Confidence 467778 999999999999 999999 9999999999999999998876542 2336789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCCC------CCCCCchhHHHhh
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQNDA------HSPCLSVWRRLQD 303 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~~------~~~~lde~d~l~~ 303 (317)
++|+.|+++.++++....++++..++||.+...+...+ .+|+|+||++|.+++..+.+ ++.++||||++..
T Consensus 306 ~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~ 385 (936)
T 4a2w_A 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCC
Confidence 99999999999999998899999999999766543332 34999999999999988654 7889999999776
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-20 Score=186.26 Aligned_cols=128 Identities=14% Similarity=0.027 Sum_probs=112.1
Q ss_pred cCcCCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q psy10677 150 MKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDG 223 (317)
Q Consensus 150 l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~ 223 (317)
+...+| .| |++|.++|+.++ .+ +|++ ++||||||||++|++|++..+.. +
T Consensus 362 ~~~lpf-~l---------t~~Q~~ai~~I~--~~l~~~~~~~~L----l~a~TGSGKTlvall~il~~l~~--------g 417 (780)
T 1gm5_A 362 IKSLPF-KL---------TNAQKRAHQEIR--NDMISEKPMNRL----LQGDVGSGKTVVAQLAILDNYEA--------G 417 (780)
T ss_dssp HHHSSS-CC---------CHHHHHHHHHHH--HHHHSSSCCCCE----EECCSSSSHHHHHHHHHHHHHHH--------T
T ss_pred HHhCCC-CC---------CHHHHHHHHHHH--hhccccCCCcEE----EEcCCCCCHHHHHHHHHHHHHHc--------C
Confidence 455677 67 999999999998 55 5899 99999999999999999998863 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHHHHHhcCCCCCCCCc
Q psy10677 224 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLGIYLQQNDAHSPCLS 296 (317)
Q Consensus 224 ~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~~~l~~~~~~~~~ld 296 (317)
.+++|++||++||.|+++.++++...++++++.++||.+..++...+ ..|+||||+++.+.+....+.+.++|
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 79999999999999999999999998899999999999887654332 23899999999887777899999999
Q ss_pred hhHHH
Q psy10677 297 VWRRL 301 (317)
Q Consensus 297 e~d~l 301 (317)
|+|++
T Consensus 498 EaHr~ 502 (780)
T 1gm5_A 498 EQHRF 502 (780)
T ss_dssp SCCCC
T ss_pred ccchh
Confidence 99985
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-19 Score=191.30 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=116.1
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCC---
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL--- 218 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~--- 218 (317)
||+....++. ||+.+ +++|++++|.+++ +++|++ ++||||||||++|.+|++..+.+....
T Consensus 66 Lp~~~~~~f~--g~~~l---------n~iQs~~~~~al~-~~~N~l----v~APTGsGKTlva~l~il~~l~~~~~~~~~ 129 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTL---------NRIQSKLYRAALE-TDENLL----LCAPTGAGKTNVALMCMLREIGKHINMDGT 129 (1724)
T ss_dssp SCGGGSTTCT--TCSBC---------CHHHHHTHHHHHT-CCCCEE----EECCTTSCCHHHHHHHHHHHHGGGCCTTSS
T ss_pred cCHHHHHhcC--CCCCC---------CHHHHHHHHHHHc-CCCcEE----EEeCCcchHHHHHHHHHHHHHHhhcccccc
Confidence 5555444442 68888 9999999999884 789999 999999999999999999999764321
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-------CCCC
Q psy10677 219 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-------NDAH 291 (317)
Q Consensus 219 ~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-------~~~~ 291 (317)
....+.++|+++|||+||.|+++.+++..+.+|+++..++||++...+...-.+|+|+||+++-.++.. +.+.
T Consensus 130 ~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~ 209 (1724)
T 4f92_B 130 INVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVR 209 (1724)
T ss_dssp CCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEE
T ss_pred ccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcC
Confidence 123578999999999999999999999988899999999999886554333345999999997555443 3577
Q ss_pred CCCCchhHHH
Q psy10677 292 SPCLSVWRRL 301 (317)
Q Consensus 292 ~~~lde~d~l 301 (317)
+.++||++-+
T Consensus 210 ~vIiDEvH~l 219 (1724)
T 4f92_B 210 LIILDEIHLL 219 (1724)
T ss_dssp EEEETTGGGG
T ss_pred EEEEecchhc
Confidence 8999999744
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-18 Score=157.73 Aligned_cols=123 Identities=12% Similarity=-0.043 Sum_probs=100.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.++ .+.+.+ +++|||||||+++++++...+... ..++||++||++|+.|+++.++++.
T Consensus 115 ~~~Q~~ai~~~l--~~~~~l----l~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 115 HWYQKDAVFEGL--VNRRRI----LNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CHHHHHHHHHHH--HHSEEE----ECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHH--hcCCeE----EEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 999999999999 888888 999999999999999988877542 3489999999999999999999998
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh--cCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ--QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~--~~~~~~~~lde~d~l~~ 303 (317)
...+.++..++||.+.......-..|+|+||+++..... ...+++.++||||++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG 239 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH
T ss_pred ccccceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc
Confidence 777788889989876643111223399999998876522 24678999999999765
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-18 Score=175.80 Aligned_cols=128 Identities=16% Similarity=0.023 Sum_probs=103.0
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH-HHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI-QAVISI 245 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi-~~~~~~ 245 (317)
++|+|.++++.++ .|+|++ +++|||||||++|++|++..+...+. .+.+.++||++||++|+.|+ .+.+++
T Consensus 8 l~~~Q~~~i~~il--~g~~~l----l~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 8 LRPYQMEVAQPAL--EGKNII----ICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp CCHHHHHHHHHHH--SSCCEE----ECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHHH--hCCCEE----EEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4999999999999 999999 99999999999999999998875321 12347899999999999999 999999
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHH---ccCcEEECcHHHHHHHh-----------cCCCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVIL---LRILTSATNTSLGIYLQ-----------QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~---~~~ilv~TP~~l~~~l~-----------~~~~~~~~lde~d~l~~ 303 (317)
+... ++++..++|+.+...+... -..|+|+||++|.+++. ...+++.++||||++..
T Consensus 80 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 80 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp HHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred HcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 9886 5899999999876543322 23499999999998873 23577889999998754
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=173.83 Aligned_cols=118 Identities=8% Similarity=-0.043 Sum_probs=102.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.++ +|++++ ++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+.++.
T Consensus 88 ~~~Q~eai~~l~--~g~~vL----V~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 88 DPFQDTAISCID--RGESVL----VSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CHHHHHHHHHHH--HTCEEE----EECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--cCCCEE----EECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHh
Confidence 999999999999 999999 99999999999999999988752 5799999999999999999999887
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCc
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~ 308 (317)
. ++..++|+.+.... ..|+|+||++|.+++.++ .+.+.++||+|.|.+ .++.
T Consensus 154 ~----~vglltGd~~~~~~----~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg 210 (1010)
T 2xgj_A 154 G----DVGLMTGDITINPD----AGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERG 210 (1010)
T ss_dssp S----CEEEECSSCEECTT----CSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTH
T ss_pred C----CEEEEeCCCccCCC----CCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchh
Confidence 6 57788898875431 349999999999988765 566889999999988 5543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-18 Score=149.10 Aligned_cols=130 Identities=10% Similarity=-0.094 Sum_probs=99.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.+. +|++++ ++||||||||++|.+++++.+..... ..++++++++|||+||.|+.+.+....
T Consensus 63 ~~~q~~~i~~i~--~g~~~~----i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 63 KKFESEILEAIS--QNSVVI----IRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGHHHHHHHHH--HCSEEE----EECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--cCCEEE----EEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 899999999999 999999 99999999999999999998776432 345799999999999999988887654
Q ss_pred c-CCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHH-hhhcCCcH
Q psy10677 248 R-TMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRL-QDILGLTE 309 (317)
Q Consensus 248 ~-~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l-~~~~gf~~ 309 (317)
. ..+..+........... ..-.+|+|||||+|++++.. ..+++.++||||++ ++ ++|..
T Consensus 134 ~~~~~~~~g~~~~~~~~~~--~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~-~~~~~ 196 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESILP--RPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDIN-TDFLL 196 (235)
T ss_dssp TCCTTSSEEEEETTEEECC--CSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHH-HHHHH
T ss_pred ccccCceEEEeechhhccC--CCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcc-hHHHH
Confidence 4 23444333222111000 00123999999999999975 57889999999996 77 66663
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-18 Score=176.58 Aligned_cols=122 Identities=9% Similarity=-0.059 Sum_probs=104.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++|+.++ +|+|++ ++||||||||++|++|+...+. .++++||++||++|+.|+++.+.++.
T Consensus 41 ~~~Q~~aI~~il--~g~~vl----v~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 41 DTFQKEAVYHLE--QGDSVF----VAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CHHHHHHHHHHH--TTCEEE----EECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHH--cCCCEE----EEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 999999999999 999999 9999999999999999987654 35799999999999999999998875
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHH
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~ 310 (317)
. ++++..++|+.+...+ ..|+|+||++|.+++..+ .+.+.++||||++.+ .+|...
T Consensus 107 ~--~~~v~~l~G~~~~~~~----~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~ 167 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINPD----ANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVV 167 (997)
T ss_dssp ----CCEEEECSSCEECTT----SSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCC
T ss_pred C--CCeEEEEeCCCccCCC----CCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHH
Confidence 4 6788999998865432 359999999999988765 567889999999988 666554
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=151.88 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=105.6
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+|.++++.++ .+ +++ +.+|||+|||++++++++..+.. .+.++||++||++|+.|..+.+.++
T Consensus 10 l~~~Q~~~i~~~~--~~-~~l----l~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 10 PRIYQEVIYAKCK--ET-NCL----IVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCHHHHHHHHHGG--GS-CEE----EECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh--hC-CEE----EEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3999999999999 88 999 99999999999999999988762 3578999999999999999999999
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHc--cCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILL--RILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~--~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
....+.++..++|+.+........ ..|+|+||++|...+..+ .+++.++|||+.+.+
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 865566899999998877655443 349999999999987754 567889999998875
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-17 Score=164.60 Aligned_cols=142 Identities=10% Similarity=-0.025 Sum_probs=97.5
Q ss_pred cccC-CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDE-TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~-~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|+. +++++.++++|... ...| +|+|++++|.++ +|+|++ ++||||||||++|++|+++++..
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~---------lpiq~~~i~~l~--~g~dvl----v~a~TGSGKT~~~~lpil~~l~~ 213 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIG---------EPDYEVDEDIFR--KKRLTI----MDLHPGAGKTKRILPSIVREALK 213 (618)
T ss_dssp CCC---------CEECBCC-CCCC---------CCCCCCCGGGGS--TTCEEE----ECCCTTSSTTTTHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHhhc-cccC---------CCccccCHHHHh--cCCeEE----EEcCCCCCHHHHHHHHHHHHHHh
Confidence 3444 67888888888875 5788 999999999999 999999 99999999999999999999875
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-cCcEEECcHHHHHHHh----cCC
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-RILTSATNTSLGIYLQ----QND 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-~~ilv~TP~~l~~~l~----~~~ 289 (317)
.++++||++||||||.|+++.++. ..+. ..++. .. ..... ..+.+.|.+.+...+. ...
T Consensus 214 -------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~-l~-~~~tp~~~i~~~t~~~l~~~l~~~~~l~~ 277 (618)
T 2whx_A 214 -------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPA-VK-SDHTGREIVDLMCHATFTTRLLSSTRVPN 277 (618)
T ss_dssp -------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTT-SS-CCCCSSSCEEEEEHHHHHHHHHHCSSCCC
T ss_pred -------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eeccc-ce-eccCCCceEEEEChHHHHHHHhccccccC
Confidence 368999999999999999988762 2222 11111 00 00000 1145566666654433 267
Q ss_pred CCCCCCchhHHHhhhcCCcHHH
Q psy10677 290 AHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+++.++||||++ + ++|....
T Consensus 278 ~~~iViDEah~~-~-~~~~~~~ 297 (618)
T 2whx_A 278 YNLIVMDEAHFT-D-PCSVAAR 297 (618)
T ss_dssp CSEEEEESTTCC-S-HHHHHHH
T ss_pred CeEEEEECCCCC-C-ccHHHHH
Confidence 889999999998 5 5555443
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-17 Score=160.21 Aligned_cols=123 Identities=12% Similarity=-0.055 Sum_probs=104.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
++.|.+|++.++ .++|++ +++|||||||++|++|+...+... ..++|||+||++|+.|+++.++++.
T Consensus 115 ~~~Q~~ai~~~~--~~~~~l----l~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 115 HWYQKDAVFEGL--VNRRRI----LNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp CHHHHHHHHHHH--HHSEEE----EECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHH--hcCCcE----EEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhh
Confidence 999999999999 889999 999999999999999999887642 3599999999999999999999997
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH--HhcCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY--LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~--l~~~~~~~~~lde~d~l~~ 303 (317)
...++++..++||.+..++...-..|+|+||+.|... ...+.+.+.++||++++..
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp SSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH
T ss_pred cCCccceEEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc
Confidence 7777899999999887665322234999999988754 2234678999999998765
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-16 Score=167.40 Aligned_cols=139 Identities=14% Similarity=-0.032 Sum_probs=111.6
Q ss_pred CCChhhhcccC-cCCCCCCCcCCCCCCCCchhhhhccccccc--cCc--CcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 141 NIPSYILGPMK-PKTTNNENNHNKNKKCGDKESKNWTIPLNF--QAK--KFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 141 ~l~~~l~~~l~-~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~--~g~--dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+.++...+.+. ..+|. | ||+|.+|++.++.+ +|+ |++ ++|+||||||++|+++++..+.
T Consensus 587 ~~~~~~~~~~~~~f~~~-~---------t~~Q~~ai~~il~~~~~g~p~d~l----l~~~TGsGKT~val~aa~~~~~-- 650 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-T---------TPDQAQAINAVLSDMCQPLAMDRL----VCGDVGFGKTEVAMRAAFLAVD-- 650 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-C---------CHHHHHHHHHHHHHHHSSSCCEEE----EECCCCTTTHHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHhCCCC-C---------CHHHHHHHHHHHHHHhcCCcCcEE----EECCCCCCHHHHHHHHHHHHHH--
Confidence 34555555553 34665 7 99999999999831 165 999 9999999999999999987654
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHHHHHhcC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLGIYLQQN 288 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~~~l~~~ 288 (317)
.+.+++|++||++||.|+++.++++....++++..++|+.+..++...+ .+|+||||+.+...+..+
T Consensus 651 ------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 651 ------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp ------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred ------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 3569999999999999999999998888889999999888776554332 238999998876656667
Q ss_pred CCCCCCCchhHHH
Q psy10677 289 DAHSPCLSVWRRL 301 (317)
Q Consensus 289 ~~~~~~lde~d~l 301 (317)
.+.+.++||+|++
T Consensus 725 ~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 725 DLGLLIVDEEHRF 737 (1151)
T ss_dssp SEEEEEEESGGGS
T ss_pred ccceEEEechHhc
Confidence 8889999999983
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-17 Score=154.98 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=89.0
Q ss_pred CCCCCCcCCCCCCCCchhhhhccccccccCcCc-ccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 154 TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKF-ISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 154 g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dv-i~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
|+..| +|+|. ++|.++ +|+|+ + ++||||||||++|++|++.++.. .++++||++||
T Consensus 1 G~~q~---------~~iq~-~i~~~l--~~~~~~l----v~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Pt 57 (451)
T 2jlq_A 1 GSAMG---------EPDYE-VDEDIF--RKKRLTI----MDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPT 57 (451)
T ss_dssp CCCCC---------SCCCC-CCGGGG--STTCEEE----ECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred CCCCC---------CCcHH-HHHHHH--hcCCeEE----EECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCC
Confidence 67788 99986 799999 99888 8 89999999999999999998775 35899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHHH
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRRL 301 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~l 301 (317)
||||.|+++.+. ++.+....+.... ....-..+.++|||.+...+.. ..+++.++||||++
T Consensus 58 r~La~Q~~~~l~------g~~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 58 RVVAAEMEEALR------GLPIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp HHHHHHHHHHTT------TSCEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC
T ss_pred HHHHHHHHHHhc------Cceeeeeeccccc--cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC
Confidence 999999999874 2222221111111 0001112789999999877664 47789999999975
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-15 Score=147.70 Aligned_cols=113 Identities=19% Similarity=0.090 Sum_probs=96.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|.|.++++.++ .+.+++ +++|||||||++|+.++... +.++||++||++|+.|.++.+++|
T Consensus 95 ~~~Q~~ai~~i~--~~~~~l----l~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 95 RDYQEKALERWL--VDKRGC----IVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CHHHHHHHHHHT--TTTEEE----EECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CHHHHHHHHHHH--hcCCEE----EEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 999999999999 888999 99999999999999998753 468999999999999999988884
Q ss_pred cCCCcE-EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHHhhhcCCc
Q psy10677 248 RTMRIR-HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 248 ~~~~~~-~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~~~gf~ 308 (317)
+++ +..++|+.+. ...|+|+||+.+...+.. +.+.+.++||++++.+ .+|.
T Consensus 157 ---~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~-~~~~ 210 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPA-ESYV 210 (472)
T ss_dssp ---CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTS-TTTH
T ss_pred ---CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCC-hHHH
Confidence 678 8888777653 245999999999877653 5689999999999887 5554
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=148.41 Aligned_cols=119 Identities=15% Similarity=-0.013 Sum_probs=95.3
Q ss_pred Cchhhhhccc----cccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWTI----PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip~----~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.+++.. +. .|+|++ +.||||||||+||++|++. .+++++|++||++|+.|+.+.+
T Consensus 5 r~~Q~~~~~~v~~~l~--~~~~~~----~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 5 RDWQEKLKDKVIEGLR--NNFLVA----LNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CHHHHHHHHHHHHHHH--TTCEEE----EECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCcEE----EECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHH
Confidence 8999987654 45 899999 9999999999999999997 2579999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCCH---------------------------------HHHHHH---------------------
Q psy10677 244 SIFSRTMRIRHACLYGGTSK---------------------------------MYQVIL--------------------- 269 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~---------------------------------~~~~~~--------------------- 269 (317)
..+.+..+++++.+.|+.+. ......
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 99988888999988774321 111111
Q ss_pred ccCcEEECcHHHHHHHhcCC------CCCCCCchhHHHhh
Q psy10677 270 LRILTSATNTSLGIYLQQND------AHSPCLSVWRRLQD 303 (317)
Q Consensus 270 ~~~ilv~TP~~l~~~l~~~~------~~~~~lde~d~l~~ 303 (317)
-.+|||+|+++|.+...++. ....++||||.|.|
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 22499999999998755442 33578999999987
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-17 Score=163.39 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=86.4
Q ss_pred hcccCcCCCC-----CCCcCCCCCCCCchhh-----hhcccccc----ccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 147 LGPMKPKTTN-----NENNHNKNKKCGDKES-----KNWTIPLN----FQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 147 ~~~l~~~g~~-----~p~~~~~~~~~t~iQ~-----~~ip~~l~----~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+|...||. .| |+||. ++||.++. .+|+|++ ++||||||||++|++|+++.+
T Consensus 200 ~~~l~~~Gf~~~~~~~p---------t~IQ~~~r~~~aIp~~l~~~~l~~g~dvl----v~apTGSGKTl~~ll~il~~l 266 (673)
T 2wv9_A 200 IIGLYGNGVILGNGAYV---------SAIVQGERVEEPVPEAYNPEMLKKRQLTV----LDLHPGAGKTRRILPQIIKDA 266 (673)
T ss_dssp EEEEEEEEEECSSSCEE---------EEEECC-------CCCCCGGGGSTTCEEE----ECCCTTTTTTTTHHHHHHHHH
T ss_pred eEEeeeccccccCCCcc---------CceeeccccccchHHHhhHHHHhcCCeEE----EEeCCCCCHHHHHHHHHHHHH
Confidence 3477778887 78 99999 99998761 2699999 999999999999999999987
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh------
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ------ 286 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~------ 286 (317)
.. .++++||++|||+||.|+++.++.+ ++. ...+.. . .++||+++++++.
T Consensus 267 ~~-------~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l---------~--~v~tp~~ll~~l~~~~l~~ 322 (673)
T 2wv9_A 267 IQ-------KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAV---------Q--REHSGNEIVDVMCHATLTH 322 (673)
T ss_dssp HH-------TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC--------------CCCCSCCCEEEEEHHHHHH
T ss_pred Hh-------CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eecccc---------c--ccCCHHHHHHHHHhhhhHH
Confidence 75 3689999999999999999888744 232 111100 0 1566666542221
Q ss_pred -------cCCCCCCCCchhHHH
Q psy10677 287 -------QNDAHSPCLSVWRRL 301 (317)
Q Consensus 287 -------~~~~~~~~lde~d~l 301 (317)
...+.+.++||+|++
T Consensus 323 ~l~~~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 323 RLMSPLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp HHHSSSCCCCCSEEEEESTTCC
T ss_pred HHhcccccccceEEEEeCCccc
Confidence 357889999999998
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-16 Score=153.91 Aligned_cols=117 Identities=14% Similarity=-0.071 Sum_probs=85.9
Q ss_pred chhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 169 ~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
+.|.++++.+. +++|++ ++||||||||++|.+|+++ .+.++||++||||||.|+++.+.+..
T Consensus 220 ~~q~~i~~~L~--~~~~vl----v~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 220 TDNSSPPAVPQ--SFQVAH----LHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp CCCCSCCCCCS--SCEEEE----EECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH--cCCeEE----EEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 44555555555 889999 9999999999999999885 24689999999999999998766554
Q ss_pred CCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH--HhcCCCCCCCCchhHHHhhhcCCcHHH
Q psy10677 249 TMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY--LQQNDAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~--l~~~~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+.++...+|+... ..-.+|+|+|||+|+.- +....+++.++||| .+++ ++|.++.
T Consensus 282 --g~~vg~~vG~~~~----~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEA-H~l~-~~~~~~l 338 (666)
T 3o8b_A 282 --GIDPNIRTGVRTI----TTGAPVTYSTYGKFLADGGCSGGAYDIIICDEC-HSTD-STTILGI 338 (666)
T ss_dssp --SCCCEEECSSCEE----CCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTT-TCCS-HHHHHHH
T ss_pred --CCCeeEEECcEec----cCCCCEEEECcHHHHhCCCcccCcccEEEEccc-hhcC-ccHHHHH
Confidence 4456677777552 11123999999998431 11235778999999 6777 6665543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-15 Score=129.96 Aligned_cols=109 Identities=19% Similarity=0.100 Sum_probs=91.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.++ .+++++ +++|||+|||++++.++... +.+++|++||++|+.|.++.+.++
T Consensus 95 ~~~Q~~ai~~~~--~~~~~l----l~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 95 RDYQEKALERWL--VDKRGC----IVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CHHHHHHHHHHT--TTSEEE----EEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHH--hCCCEE----EEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 999999999999 888899 99999999999998887642 457999999999999999888873
Q ss_pred cCCCcE-EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIR-HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~-~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~ 303 (317)
+++ +..+.|+... ...|+|+||+.+...+.. +.+.+.++||++.+.+
T Consensus 157 ---~~~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp ---CGGGEEEESSSCBC------CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCT
T ss_pred ---CCCeEEEEeCCCCC------cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCC
Confidence 677 7777776543 345999999999876654 5689999999998876
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=146.41 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=74.3
Q ss_pred ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEE
Q psy10677 177 IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHAC 256 (317)
Q Consensus 177 ~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~ 256 (317)
.++ +|+|++ ++||||||||++|++|+++.+... +++++|++||++||.|+++.++.+ ++. .
T Consensus 4 ~l~--~g~~vl----v~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~v~--~ 64 (440)
T 1yks_A 4 MLK--KGMTTV----LDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DVK--F 64 (440)
T ss_dssp TTS--TTCEEE----ECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CEE--E
T ss_pred Hhh--CCCCEE----EEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----CeE--E
Confidence 456 899999 999999999999999999988753 689999999999999999988733 222 1
Q ss_pred EECCCCHHHHHHHccCcEEECcHHHHHHHh-------------cCCCCCCCCchhHHH
Q psy10677 257 LYGGTSKMYQVILLRILTSATNTSLGIYLQ-------------QNDAHSPCLSVWRRL 301 (317)
Q Consensus 257 ~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~-------------~~~~~~~~lde~d~l 301 (317)
..+.. -.|+||+++++++. ...+.+.++||+|++
T Consensus 65 ~~~~~-----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 65 HTQAF-----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp ESSCC-----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred ecccc-----------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc
Confidence 11111 14888888764333 367889999999998
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-15 Score=153.66 Aligned_cols=149 Identities=9% Similarity=-0.000 Sum_probs=107.2
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
.++.+|+++++++.+.+.+++.+ ..| +++|.++|+.++. .|++++ ++||||||||+ ++|++..
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP---------~~~q~~~i~~~l~-~~~~vi----i~gpTGSGKTt--llp~ll~ 131 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELP---------VHAQRDEFLKLYQ-NNQIMV----FVGETGSGKTT--QIPQFVL 131 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSG---------GGGGHHHHHHHHH-HCSEEE----EECCTTSSHHH--HHHHHHH
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCC---------hHHHHHHHHHHHh-CCCeEE----EECCCCCCHHH--HHHHHHH
Confidence 45678999999999999999888 789 9999999999883 556799 99999999999 6777733
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CHHHHHHHccCcEEECcHHHHHHHhc---
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT-SKMYQVILLRILTSATNTSLGIYLQQ--- 287 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~-~~~~~~~~~~~ilv~TP~~l~~~l~~--- 287 (317)
.... ..+.+++++|++|||+||.|+++.+.... ++++...+|+. ........-..|+++|||++.+.+..
T Consensus 132 ~~~~---~~~~g~~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~ 205 (773)
T 2xau_A 132 FDEM---PHLENTQVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205 (773)
T ss_dssp HHHC---GGGGTCEEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTT
T ss_pred Hhcc---ccCCCceEEecCchHHHHHHHHHHHHHHh---CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCcc
Confidence 2221 11236789999999999999988665543 22222222211 11100011223999999999987654
Q ss_pred -CCCCCCCCchhHH-Hhh
Q psy10677 288 -NDAHSPCLSVWRR-LQD 303 (317)
Q Consensus 288 -~~~~~~~lde~d~-l~~ 303 (317)
..+.+.++||+|. +++
T Consensus 206 l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLA 223 (773)
T ss_dssp CTTEEEEEECSGGGCCHH
T ss_pred ccCCCEEEecCccccccc
Confidence 4677899999995 665
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-14 Score=134.03 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=119.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|++++++++.++.+|..+.++..+ ....++.|.++.++..+|...|.+++.
T Consensus 241 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~ 319 (434)
T 2db3_A 241 MFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASF 319 (434)
T ss_dssp EEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence 589999999999999999999999998777 677899999999998889888887774
Q ss_pred ----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHH
Q psy10677 59 ----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 59 ----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~ 116 (317)
+||+++| +|++|+.+|||| +||+|+ .++..|++|++|... ++++++
T Consensus 320 L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi------~~v~~VI~~d~p~~~------~~y~qr 387 (434)
T 2db3_A 320 LSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI------KNIKHVINYDMPSKI------DDYVHR 387 (434)
T ss_dssp HHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC------TTCCEEEESSCCSSH------HHHHHH
T ss_pred HHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc------ccCCEEEEECCCCCH------HHHHHH
Confidence 9999998 999999999999 999999 899999999998754 789999
Q ss_pred HHHHCCceeecCCCCCCccc-ccCCCCChhhhcccCcCCCCCC
Q psy10677 117 FRKEHNITLIGQNIPKPVKT-LDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 117 ~~~~~~i~~~g~~~~~~~~~-f~~~~l~~~l~~~l~~~g~~~p 158 (317)
.+|.+|.+-.|..+ .+.+ -++..+...+.+.|++.+-..|
T Consensus 388 iGR~gR~g~~G~a~--~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 388 IGRTGRVGNNGRAT--SFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp HTTSSCTTCCEEEE--EEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred hcccccCCCCCEEE--EEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 99998887666543 1212 2344566677788877777666
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.4e-14 Score=133.91 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=80.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEE
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHA 255 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~ 255 (317)
..+. +|++++ ++||||||||++|++|+++++.. .++++||++|||+||.|+++.++ +..+.
T Consensus 16 ~~l~--~~~~vl----v~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~ 76 (459)
T 2z83_A 16 NMLR--KRQMTV----LDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVR 76 (459)
T ss_dssp GGGS--TTCEEE----ECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEE
T ss_pred HHHh--cCCcEE----EECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEe
Confidence 3455 899999 99999999999999999998875 35899999999999999999886 22222
Q ss_pred EEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH-----HhhhcCCcHHH
Q psy10677 256 CLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR-----LQDILGLTEET 311 (317)
Q Consensus 256 ~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~-----l~~~~gf~~~~ 311 (317)
...+..... ...-..+.+.|.+.+...+.. +.+.+.++||||+ +++ +||..+.
T Consensus 77 ~~~~~~~~~--~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~-~~~~~~~ 138 (459)
T 2z83_A 77 YQTSAVQRE--HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAA-RGYIATK 138 (459)
T ss_dssp ECC----------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHH-HHHHHHH
T ss_pred EEecccccC--CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHH-HHHHHHH
Confidence 221111110 011112567888887655543 4788999999998 677 7776554
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-14 Score=139.44 Aligned_cols=117 Identities=11% Similarity=-0.014 Sum_probs=81.7
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 250 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~ 250 (317)
|.......+ +|++++ ++||||||||+ +++..+... ..++|++|||+||.|+++.++++
T Consensus 145 ~~~p~ar~l--~rk~vl----v~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 145 NWYPDARAM--QRKIIF----HSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp GGCHHHHTS--CCEEEE----EECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred hhCHHHHhc--CCCEEE----EEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 333344567 999999 99999999998 555666543 34599999999999999998775
Q ss_pred CcEEEEEECCCCHHHHH-HHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 251 RIRHACLYGGTSKMYQV-ILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 251 ~~~~~~~~gg~~~~~~~-~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
++++..++||.+..... .....++++|+..+. ....+.+.++||+|+++| .+|......
T Consensus 203 g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~---l~~~v~lvVIDEaH~l~d-~~~g~~~~~ 262 (677)
T 3rc3_A 203 GVPCDLVTGEERVTVQPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRD-PARGWAWTR 262 (677)
T ss_dssp TCCEEEECSSCEECCSTTCCCCSEEEEEGGGCC---SSSCEEEEEECSGGGGGC-TTTHHHHHH
T ss_pred CCcEEEEECCeeEEecCCCcccceeEecHhHhh---hcccCCEEEEecceecCC-ccchHHHHH
Confidence 67889999987651000 001224555553221 124568899999999998 888765543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-13 Score=141.07 Aligned_cols=121 Identities=12% Similarity=-0.067 Sum_probs=93.3
Q ss_pred CCchhhhhccccccc------------cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 167 CGDKESKNWTIPLNF------------QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~------------~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
++|+|..|++.++.. .+++.+ +.++||||||+++ ++++..+... ....++|||||+++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gl----i~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGY----IWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKD 341 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEE----EEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGG
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEE----EEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHH
Confidence 499999999998820 147889 9999999999997 7777555432 23469999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcC-------CCCCCCCchhHHHhh
Q psy10677 235 LAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQN-------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 235 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~-------~~~~~~lde~d~l~~ 303 (317)
|+.|+.+.++.+... .+.|+.+.......+. .|+|+||++|.++++.. ...+.++|||+++..
T Consensus 342 L~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999988764 1346666665555552 38999999999987643 345778999999875
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-13 Score=127.27 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=71.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|+|++ ++||||||||++|++|+++++.. .+++++|++||++||.|+++.++ ++.+....|+.
T Consensus 1 kg~~~l----v~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTV----LDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEE----EECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----
T ss_pred CCCEEE----EEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCc
Confidence 478899 99999999999999999987765 36799999999999999998775 34555555543
Q ss_pred CHHHHHHHc-cCcEEECcHHHHHHHhc----CCCCCCCCchhHHH
Q psy10677 262 SKMYQVILL-RILTSATNTSLGIYLQQ----NDAHSPCLSVWRRL 301 (317)
Q Consensus 262 ~~~~~~~~~-~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~l 301 (317)
.. ...- ..+.+.|.|.+...+.. ..+.+.++||+|++
T Consensus 64 ~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 64 QS---ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC
T ss_pred cc---cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC
Confidence 22 1111 12566788877654443 47889999999986
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-13 Score=129.41 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=58.2
Q ss_pred Cchhhhhcc----ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWT----IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip----~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
+|+|.+++. .+. .|++++ +.||||||||+||++|++.. +++++|++||++|+.|+.+.+
T Consensus 9 r~~Q~~~~~~v~~~~~--~~~~~~----~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 9 RQWQAEKLGEAINALK--HGKTLL----LNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp CCHHHHHHHHHHHHHH--TTCEEE----EECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCCEE----EEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 999999864 455 889999 99999999999999999753 479999999999999999887
Q ss_pred HHHhcCCCcEEEEEEC
Q psy10677 244 SIFSRTMRIRHACLYG 259 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~g 259 (317)
..+ +++++.+.|
T Consensus 72 ~~l----~~~~~~l~g 83 (540)
T 2vl7_A 72 KLL----GLKTGFLIG 83 (540)
T ss_dssp GGG----TCCEEEC--
T ss_pred Hhc----CCcEEEecC
Confidence 774 455555444
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-13 Score=133.69 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=70.8
Q ss_pred CCCchhhhhcccccccc----C-cCcccccceeccCCChhHHHHHHHHHHHHHcCC--CCCCCCCceEEEEcCcHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQ----A-KKFISVLQKKAEVQSRSVFTYILPALYHILKMP--KLEEGDGPIALVLAPTRELAQQ 238 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~----g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~--~~~~~~~~~alil~PtreLa~Q 238 (317)
.++++|.++++.++ . | ++++ ++++||||||+++ ++++.++.... ......++++|||+||++|+.|
T Consensus 178 ~lr~~Q~~ai~~~~--~~~~~~~~~~l----l~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q 250 (590)
T 3h1t_A 178 SPRYYQQIAINRAV--QSVLQGKKRSL----ITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDD 250 (590)
T ss_dssp -CCHHHHHHHHHHH--HHHHTTCSEEE----EEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-------
T ss_pred CchHHHHHHHHHHH--HHHhcCCCceE----EEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHH
Confidence 34999999999988 5 4 5688 9999999999996 45556655432 0111257899999999999999
Q ss_pred HH-HHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh---------cCCCCCCCCchhHHHhh
Q psy10677 239 IQ-AVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ---------QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 239 i~-~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~---------~~~~~~~~lde~d~l~~ 303 (317)
++ +.++.+.. .+..+.++... .-..|+|+||++|...+. ...+++.++||||++..
T Consensus 251 ~~~~~~~~~~~----~~~~~~~~~~~-----~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 251 PKDKTFTPFGD----ARHKIEGGKVV-----KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp ----CCTTTCS----SEEECCC--CC-----SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHHHHHHhcch----hhhhhhccCCC-----CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 99 77766543 33333333211 122499999999988753 23577899999999876
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=122.25 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=72.7
Q ss_pred Cchhhhhcc----ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWT----IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip----~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.+.+. .+. .|++++ +.||||||||+||++|++.++.. .+++++|++||++|+.|+.+.+
T Consensus 5 R~~Q~~~~~~v~~~l~--~~~~~~----~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQ--KSYGVA----LESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp CHHHHHHHHHHHHHHH--HSSEEE----EECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCCEE----EECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHH
Confidence 889988874 456 899999 99999999999999999999865 2579999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCC
Q psy10677 244 SIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~ 262 (317)
..+.+..+++++.++|+.+
T Consensus 72 ~~l~~~~~~~~~~l~gr~~ 90 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQGRVN 90 (620)
T ss_dssp HHHHHHSCCCEEECCCHHH
T ss_pred HHHhhccCeEEEEEECCCc
Confidence 9999877899999888654
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-11 Score=115.10 Aligned_cols=143 Identities=27% Similarity=0.335 Sum_probs=112.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|.+++.++..++.+|..+.+.... ....++.|.+..++..+|...|.++++
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 293 (417)
T 2i4i_A 215 MFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLE 293 (417)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 489999999999999999999998887766 567889999999998888888877774
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ +|++|+.+|||| ++|+|+ .++..+++|+.|... ..++
T Consensus 294 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi------p~v~~Vi~~~~p~s~------~~~~ 361 (417)
T 2i4i_A 294 DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI------SNVKHVINFDLPSDI------EEYV 361 (417)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCC------CCEEEEEESSCCSSH------HHHH
T ss_pred HHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc------ccCCEEEEEcCCCCH------HHHH
Confidence 8999997 899999999999 999999 889999999988654 6788
Q ss_pred HHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 115 DSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++.++.++.+-.|..+ .+.+-++...-..+.+.+...+...|
T Consensus 362 Qr~GR~gR~g~~g~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (417)
T 2i4i_A 362 HRIGRTGRVGNLGLAT--SFFNERNINITKDLLDLLVEAKQEVP 403 (417)
T ss_dssp HHHTTBCC--CCEEEE--EEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred HhcCccccCCCCceEE--EEEccccHHHHHHHHHHHHHhcCcCC
Confidence 8888887775555443 33444566666777777776665555
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=116.06 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=99.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.-.+. +|+ + +...||+|||+++.+|++-..+. |..+.|++||++||.|-.+++..+.
T Consensus 77 ~dvQligg~~L~--~G~--i----aEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 77 FDVQVMGGIALH--EGK--V----AEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CHHHHHHHHHHH--TTC--E----EECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh--CCC--h----hhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 999999998888 888 7 88999999999999999866543 5679999999999999999999999
Q ss_pred cCCCcEEEEEEC--------------------------------------------------CCCHHHHHHHccC-cEEE
Q psy10677 248 RTMRIRHACLYG--------------------------------------------------GTSKMYQVILLRI-LTSA 276 (317)
Q Consensus 248 ~~~~~~~~~~~g--------------------------------------------------g~~~~~~~~~~~~-ilv~ 276 (317)
+.+|+++++++. +.+..+...+... |+-|
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 999999999998 3343444444433 9999
Q ss_pred CcHHHH-HHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 277 TNTSLG-IYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 277 TP~~l~-~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
|+..+. |+|..+ .+++..+||+|.+|=
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLI 259 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLI 259 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHT
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceee
Confidence 999986 666643 567888999998763
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.8e-12 Score=106.11 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------------------CCCC
Q psy10677 15 KEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------------------GHYP 62 (317)
Q Consensus 15 ~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------------------lhg~ 62 (317)
-.||++|+.|.++..+ .+..+|+|+|+.+++.+|...|.+++. +||+
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4689999999998877 688899999999999999999998885 9999
Q ss_pred ccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 63 KSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 63 ~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
|++ +|++|+.+|||| +||+|+ .++..+++|+.|... ..++++.++.++.+-.|..
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi------~~v~~VI~~d~p~~~------~~~~qr~GR~gR~g~~g~~ 154 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDF------PAIQHVINYDMPEEI------ENYVHRIGRTGCSGNTGIA 154 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCC------CCCSEEEESSCCSSH------HHHHHHHTTSCC---CCEE
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCc------ccCCEEEEeCCCCCH------HHHHHHhCccccCCCCcEE
Confidence 998 999999999999 999999 788999999988654 6788888888877665543
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=111.59 Aligned_cols=122 Identities=12% Similarity=0.050 Sum_probs=89.3
Q ss_pred CCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
++|+|.++++.+.. ..|++++ ++.+||+|||+..+. ++..+... .....+||+||+ .|+.|..++++
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~i----lad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGIC----LADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEE----ECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEE----EEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHH
Confidence 39999999987631 1688999 999999999999654 45555432 234689999995 58999999999
Q ss_pred HHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH--HhcCCCCCCCCchhHHHhh
Q psy10677 245 IFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY--LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 245 ~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~--l~~~~~~~~~lde~d~l~~ 303 (317)
++.. ++++..+.|+.... ...-..|+|+|++++... +.....++.++|||+++-+
T Consensus 107 ~~~~--~~~v~~~~g~~~~~--~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn 163 (500)
T 1z63_A 107 KFAP--HLRFAVFHEDRSKI--KLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKN 163 (500)
T ss_dssp HHCT--TSCEEECSSSTTSC--CGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSC
T ss_pred HHCC--CceEEEEecCchhc--cccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCC
Confidence 9876 45666666665321 111123899999999754 4556778999999999865
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-10 Score=109.81 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=25.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
+||||+|.++..++..++.+|..+.+.... .....+.|.++.++. ..|...|..++.
T Consensus 272 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 272 LFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp EEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------------------
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 589999999999999999999999988776 567788888888765 456666666554
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..|++|+.|.......-...++
T Consensus 351 ~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi------p~v~~VI~~d~p~~~~~~~s~~~~~ 424 (479)
T 3fmp_B 351 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV------EQVSVVINFDLPVDKDGNPDNETYL 424 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcc------ccCCEEEEecCCCCCccCCCHHHHH
Confidence 9999997 999999999999 999999 8899999999885431111125678
Q ss_pred HHHHHHCCceeecCCC
Q psy10677 115 DSFRKEHNITLIGQNI 130 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~ 130 (317)
++.+|.+|.+-.|..+
T Consensus 425 Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 425 HRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ----------------
T ss_pred HHhcccccCCCCceEE
Confidence 8888887766666543
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.7e-10 Score=114.83 Aligned_cols=122 Identities=11% Similarity=-0.080 Sum_probs=88.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|+|.+++..++...+.+++ ++++||+|||+.++..+...+... ...++|||||+ .|+.|..+.+.+..
T Consensus 155 rpyQ~eav~~~l~~~~~~~L----Lad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 155 IPHQLNIAHDVGRRHAPRVL----LADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CHHHHHHHHHHHHSSSCEEE----ECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCCCEE----EECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 99999999988843355788 899999999999988776665432 23479999999 99999998886654
Q ss_pred cCCCcEEEEEECCCCHHHHHHH---c--cCcEEECcHHHH------HHHhcCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVIL---L--RILTSATNTSLG------IYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~---~--~~ilv~TP~~l~------~~l~~~~~~~~~lde~d~l~~ 303 (317)
++++..+.|+......... + ..|+|+|++.+. ..+....+++.++|||+++-.
T Consensus 224 ---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 224 ---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp ---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCC
T ss_pred ---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcC
Confidence 4565555443322211111 1 128999999884 346667899999999998754
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-10 Score=104.16 Aligned_cols=115 Identities=25% Similarity=0.310 Sum_probs=96.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
+||||+|.++.++++.++.+|..+.+.... ....++.|.+..++..+ |.+.|..++.
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 215 LISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp EEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 589999999999999999999998887666 56778999988887655 7777777664
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ +|++|+.+|||| ++|+|+ .++..+++|+.|... ..++
T Consensus 294 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------~~v~~Vi~~~~p~s~------~~~~ 361 (410)
T 2j0s_A 294 EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV------PQVSLIINYDLPNNR------ELYI 361 (410)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC------TTEEEEEESSCCSSH------HHHH
T ss_pred HHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc------ccCCEEEEECCCCCH------HHHH
Confidence 9999997 999999999999 999999 889999999988654 6788
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
++.++.++.+-.|.
T Consensus 362 Qr~GR~gR~g~~g~ 375 (410)
T 2j0s_A 362 HRIGRSGRYGRKGV 375 (410)
T ss_dssp HHHTTSSGGGCCEE
T ss_pred HhcccccCCCCceE
Confidence 88888777654553
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.9e-09 Score=95.83 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=94.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
++|||+|..++.++..++.+|..+.+..........+.+++..++..+|...|..+++
T Consensus 189 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~ 268 (391)
T 1xti_A 189 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 268 (391)
T ss_dssp EEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHH
T ss_pred EEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHH
Confidence 4899999999999999999999888776543455788999988888888887777664
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||++++ +|++|+.++||| ++|+|+ .+...+++|+.|... ..+++
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi------~~~~~Vi~~~~p~s~------~~~~Q 336 (391)
T 1xti_A 269 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI------ERVNIAFNYDMPEDS------DTYLH 336 (391)
T ss_dssp HHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC------TTEEEEEESSCCSSH------HHHHH
T ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCc------ccCCEEEEeCCCCCH------HHHHH
Confidence 9999987 999999999999 999999 788999999988644 57777
Q ss_pred HHHHHCCceeec
Q psy10677 116 SFRKEHNITLIG 127 (317)
Q Consensus 116 ~~~~~~~i~~~g 127 (317)
+.+|.++.+-.|
T Consensus 337 r~GR~~R~g~~g 348 (391)
T 1xti_A 337 RVARAGRFGTKG 348 (391)
T ss_dssp HHCBCSSSCCCC
T ss_pred hcccccCCCCce
Confidence 777766654333
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=100.07 Aligned_cols=129 Identities=10% Similarity=0.118 Sum_probs=92.0
Q ss_pred Cchhhhhcccccc-------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN-------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 168 t~iQ~~~ip~~l~-------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|+|.+++..++. ..+...+ +..++|+|||+..+..+...+...+. ......++||+||+ .|+.|..
T Consensus 57 rpyQ~~gv~~l~~~~~~~~~~~~~g~I----Lad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 57 RPHQREGVKFLWDCVTGRRIENSYGCI----MADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSSSTTCCEEE----ECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhhhcccccCCCCeE----eeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHH
Confidence 8999999987641 1556788 89999999999987766655543321 11223469999997 8899999
Q ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHH--HH-c--------cCcEEECcHHHHHH---HhcCCCCCCCCchhHHHhh
Q psy10677 241 AVISIFSRTMRIRHACLYGGTSKMYQV--IL-L--------RILTSATNTSLGIY---LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~gg~~~~~~~--~~-~--------~~ilv~TP~~l~~~---l~~~~~~~~~lde~d~l~~ 303 (317)
+++.++... .+.+..++||....... .. + ..|+|+|++.+... +.....++.++|||+++-.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCC
Confidence 999999875 56777777776443221 11 1 23899999988754 3345778899999998743
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=98.70 E-value=7.9e-09 Score=96.77 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=94.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
++|||++..+..++..++.+|..+.+.... .....+.+.+..+.. .+|...|..++.
T Consensus 205 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 205 LFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp EEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred EEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 489999999999999999999998887666 567788888887765 346666666553
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ +|++|+.+|||| ++|+|+ .+...+++|+.|.......-..+++
T Consensus 284 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------p~~~~Vi~~~~p~~~~~~~s~~~~~ 357 (412)
T 3fht_A 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV------EQVSVVINFDLPVDKDGNPDNETYL 357 (412)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCC------TTEEEEEESSCCBCSSSSBCHHHHH
T ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCc------cCCCEEEEECCCCCCCCCcchheee
Confidence 9999997 999999999999 999999 7899999999885432111225778
Q ss_pred HHHHHHCCceeec
Q psy10677 115 DSFRKEHNITLIG 127 (317)
Q Consensus 115 ~~~~~~~~i~~~g 127 (317)
++.+|.++.+-.|
T Consensus 358 Qr~GR~gR~g~~g 370 (412)
T 3fht_A 358 HRIGRTGRFGKRG 370 (412)
T ss_dssp HHHTTSSCTTCCE
T ss_pred cccCcccCCCCCc
Confidence 8877777654444
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-09 Score=97.79 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=82.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
++|||+|..+.++++.++.+|..+.+.... .....+.+.+..++..+ |...|..++.
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 297 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRDPIRILVKKEE-LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT 297 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSSCEEECCCCCC-CCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHcCCCEEEEecCCc-cCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH
Confidence 489999999999999999999998887666 56778888888877544 7777776654
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..+++|+.|... ..++
T Consensus 298 ~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------p~v~~Vi~~~~p~s~------~~~~ 365 (414)
T 3eiq_A 298 EKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV------QQVSLVINYDLPTNR------ENYI 365 (414)
T ss_dssp HHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG------GGCSCEEESSCCSST------HHHH
T ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc------cCCCEEEEeCCCCCH------HHhh
Confidence 9999997 899999999999 999999 788889999988644 5677
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
++.+|.++.+-.|.
T Consensus 366 Qr~GR~gR~g~~g~ 379 (414)
T 3eiq_A 366 HRIGRGGRFGRKGV 379 (414)
T ss_dssp HHSCCC-------C
T ss_pred hhcCcccCCCCCce
Confidence 77666665544443
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.3e-09 Score=104.67 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=78.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhH--HHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSV--FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKT--la~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++.|.+|++.++ .+++++ ++|++||||| ++++++.+..+.. ..+.++++++||+++|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l--~~~~~v----i~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVAL--TRRISV----ISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHH--TBSEEE----EECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHh--cCCCEE----EEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHH
Confidence 789999999999 999999 9999999999 7899998876532 2367999999999999999999888
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHH-HHHhc--CCCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLG-IYLQQ--NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~-~~l~~--~~~~~~~lde~d~l~~ 303 (317)
+...++++.... .+.+ .+...+..++-.+|+... .+... ...+++++|||+ |++
T Consensus 219 ~~~~l~l~~~~~-~~~~--~~~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAs-ml~ 275 (608)
T 1w36_D 219 ALRQLPLTDEQK-KRIP--EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS-MID 275 (608)
T ss_dssp HHHHSSCCSCCC-CSCS--CCCBTTTSCC-----------CTTSCCSCSEEEECSGG-GCB
T ss_pred HHhcCCCCHHHH-hccc--hhhhhhHhhhccCCCchHHHhccCCCCCCCEEEEechh-hCC
Confidence 776555432111 1110 011122223434454321 11111 156788999998 665
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-08 Score=95.12 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=25.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
++|||+|..+.++...++.+|..+.+.... ....++.+.+..++..+ |...+..+++
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 276 (394)
T 1fuu_A 198 LLSATMPNDVLEVTTKFMRNPVRILVKKDE-LTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELT 276 (394)
T ss_dssp EECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------------------------
T ss_pred EEEEecCHHHHHHHHHhcCCCeEEEecCcc-ccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHH
Confidence 479999999999999999999998887665 45567777777666543 6666655553
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ .|++|+.++||| ++|+|+ .+...+++|+.|... .+.+
T Consensus 277 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi------~~~~~Vi~~~~p~s~------~~~~ 344 (394)
T 1fuu_A 277 TKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV------QQVSLVINYDLPANK------ENYI 344 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc------ccCCEEEEeCCCCCH------HHHH
Confidence 9999986 999999999999 999999 788889999887643 5678
Q ss_pred HHHHHHCCceeecCC
Q psy10677 115 DSFRKEHNITLIGQN 129 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~ 129 (317)
++.+|.++.+-.|..
T Consensus 345 Qr~GR~~R~g~~g~~ 359 (394)
T 1fuu_A 345 HRIGRGGRFGRKGVA 359 (394)
T ss_dssp ---------------
T ss_pred HHcCcccCCCCCceE
Confidence 888877776555544
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-09 Score=89.04 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCcCcEEEEEEccCCCchhhhhhhcc----------------------------------CCCCccc--------eeec
Q psy10677 32 AANPNIKQFVEICHEYEKPAKWWDSNN----------------------------------GHYPKSV--------RFVL 69 (317)
Q Consensus 32 ~~~~~i~q~~~~~~~~~K~~~L~~ll~----------------------------------lhg~~~q--------~F~~ 69 (317)
.++++|+|+|+.|+..+|...|.++++ +||+|++ +|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 567899999999999999999988885 9999987 8999
Q ss_pred Ccccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChh
Q psy10677 70 GTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSY 145 (317)
Q Consensus 70 g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~ 145 (317)
|+.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.|..+ .+.+-.+...-..
T Consensus 95 g~~~vLvaT~~~~~Gldi------~~~~~VI~~d~p~s~------~~~~Qr~GR~~R~g~~g~~~--~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDI------SNVKHVINFDLPSDI------EEYVHRIGRTGRVGNLGLAT--SFFNERNINITKD 160 (185)
T ss_dssp TSSSEEEEEC------CC------CSBSEEEESSCCSSH------HHHHHHHTTBCCTTSCEEEE--EEECGGGGGGHHH
T ss_pred CCCeEEEEcChhhcCCCc------ccCCEEEEeCCCCCH------HHHHHHccccCCCCCCcEEE--EEEchhhHHHHHH
Confidence 99999999 999999 788899999988654 67888888777765444332 2233344445555
Q ss_pred hhcccCcCCCC
Q psy10677 146 ILGPMKPKTTN 156 (317)
Q Consensus 146 l~~~l~~~g~~ 156 (317)
+.+.+...+-.
T Consensus 161 l~~~l~~~~~~ 171 (185)
T 2jgn_A 161 LLDLLVEAKQE 171 (185)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhccCC
Confidence 55555544333
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-08 Score=93.49 Aligned_cols=114 Identities=17% Similarity=0.250 Sum_probs=92.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
++|||+|..+.++...++.+|..+.+... ....++.+++..++...|...+..++.
T Consensus 199 ~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 199 LFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHH
Confidence 48999999999999999999988766533 355688999988888888887777664
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|++ .|++|+.+|||| ++|+|+ .+...+++|+.|... ...++
T Consensus 277 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi------p~~~~Vi~~~~p~s~------~~~~Q 344 (400)
T 1s2m_A 277 KITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI------QAVNVVINFDFPKTA------ETYLH 344 (400)
T ss_dssp HHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC------TTEEEEEESSCCSSH------HHHHH
T ss_pred HHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCc------cCCCEEEEeCCCCCH------HHHHH
Confidence 8999987 899999999999 999999 788899999988643 57778
Q ss_pred HHHHHCCceeecC
Q psy10677 116 SFRKEHNITLIGQ 128 (317)
Q Consensus 116 ~~~~~~~i~~~g~ 128 (317)
+.+|.+|.+-.|.
T Consensus 345 r~GR~gR~g~~g~ 357 (400)
T 1s2m_A 345 RIGRSGRFGHLGL 357 (400)
T ss_dssp HHCBSSCTTCCEE
T ss_pred hcchhcCCCCCce
Confidence 8777766654443
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.6e-08 Score=98.28 Aligned_cols=125 Identities=9% Similarity=-0.017 Sum_probs=89.7
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.|.+++..++. ..|++.+ ++.++|+|||+..+..+...+... .....+||+|| ..|+.|..+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~I----LademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGI----LADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEE----ECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEE----EEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHH
Confidence 449999999964431 2788899 999999999998766655444332 12345899999 67888999999
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHc---------------cCcEEECcHHHHH---HHhcCCCCCCCCchhHHHh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILL---------------RILTSATNTSLGI---YLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~---------------~~ilv~TP~~l~~---~l~~~~~~~~~lde~d~l~ 302 (317)
.++.. ++++.+.+|+.......... ..|+|+|++.+.. .+..-...+.++|||+++-
T Consensus 306 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 306 EKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGC
T ss_pred HHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhc
Confidence 99875 46777776665544433221 1289999999975 3444567889999999974
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=83.36 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=72.1
Q ss_pred CCcCcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCc
Q psy10677 33 ANPNIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGT 71 (317)
Q Consensus 33 ~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~ 71 (317)
+..+|+|+|+.++..+|...|.++++ +||+|++ +|++|.
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 34689999999999999999998885 9999997 999999
Q ss_pred ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 72 AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 72 ~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.|.
T Consensus 82 ~~vLvaT~~~~~Gldi------~~~~~Vi~~d~p~~~------~~~~qr~GR~~R~g~~g~ 130 (172)
T 1t5i_A 82 RRILVATNLFGRGMDI------ERVNIAFNYDMPEDS------DTYLHRVARAGRFGTKGL 130 (172)
T ss_dssp CSEEEESSCCSTTCCG------GGCSEEEESSCCSSH------HHHHHHHHHHTGGGCCCE
T ss_pred CcEEEECCchhcCcch------hhCCEEEEECCCCCH------HHHHHHhcccccCCCCcE
Confidence 999999 999999 788999999998754 789999999988765554
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-08 Score=90.77 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=92.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
++|||++..+..+++.++.++..+.+.... .....+.+.+..+.. ..|...+..++.
T Consensus 182 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 260 (395)
T 3pey_A 182 LFSATFADAVRQYAKKIVPNANTLELQTNE-VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLY 260 (395)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEECCCGGG-CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHhCCCCeEEEccccc-cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHH
Confidence 489999999999999999999888776665 456778888877754 346666655543
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ +|++|+.+|||| ++|+|+ .+...+++|+.|.......-....+
T Consensus 261 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------p~~~~Vi~~~~p~~~~~~~s~~~~~ 334 (395)
T 3pey_A 261 GKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI------PTVSMVVNYDLPTLANGQADPATYI 334 (395)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC------TTEEEEEESSCCBCTTSSBCHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc------ccCCEEEEcCCCCCCcCCCCHHHhh
Confidence 9999997 999999999999 999999 7899999999886321111126778
Q ss_pred HHHHHHCCceeec
Q psy10677 115 DSFRKEHNITLIG 127 (317)
Q Consensus 115 ~~~~~~~~i~~~g 127 (317)
++.+|.++.+-.|
T Consensus 335 Qr~GR~gR~g~~g 347 (395)
T 3pey_A 335 HRIGRTGRFGRKG 347 (395)
T ss_dssp HHHTTSSCTTCCE
T ss_pred HhccccccCCCCc
Confidence 8887777755444
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-08 Score=81.51 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCcCcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecC
Q psy10677 32 AANPNIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLG 70 (317)
Q Consensus 32 ~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g 70 (317)
....+|+|+|+.++.++|.+.|.++++ +||+|++ +|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 356789999999999999999998885 9999997 99999
Q ss_pred cccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 71 TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 71 ~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
+.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.|
T Consensus 85 ~~~vlv~T~~~~~Gld~------~~~~~Vi~~~~p~~~------~~~~qr~GR~~R~g~~g 133 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDI------ENISLVINYDLPLEK------ESYVHRTGRTGRAGNKG 133 (163)
T ss_dssp SCSEEEECGGGTTTCCC------SCCSEEEESSCCSSH------HHHHHHTTTSSCTTCCE
T ss_pred CCeEEEECChhhcCCch------hcCCEEEEeCCCCCH------HHHHHhccccCcCCCCc
Confidence 9999999 999999 788999999988654 67788877776664444
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.9e-08 Score=95.34 Aligned_cols=117 Identities=22% Similarity=0.208 Sum_probs=87.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCC---CCCCcCcEEEEEEccCCC--chhhhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSAN---LAANPNIKQFVEICHEYE--KPAKWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~---~~~~~~i~q~~~~~~~~~--K~~~L~~ll~----------------- 58 (317)
+||||+|+.+++++..++.+|..+.+.... ......+.|.+..++... +...+..+..
T Consensus 218 ~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t 297 (579)
T 3sqw_A 218 LFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 297 (579)
T ss_dssp EEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSS
T ss_pred EEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCc
Confidence 589999999999999999999777654321 134567777777666432 1122211110
Q ss_pred -----------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCc
Q psy10677 59 -----------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSV 103 (317)
Q Consensus 59 -----------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~ 103 (317)
+||+|++ +|++|+.+|||| +||+|+ .++..|++|+.|..
T Consensus 298 ~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDi------p~v~~VI~~~~p~s 371 (579)
T 3sqw_A 298 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF------PNVHEVLQIGVPSE 371 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC------TTCCEEEEESCCSS
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCc------ccCCEEEEcCCCCC
Confidence 8999998 899999999999 999999 78999999998875
Q ss_pred cccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 104 NHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 104 ~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
. +.++++.++.++.+-.|..
T Consensus 372 ~------~~y~Qr~GRagR~g~~g~~ 391 (579)
T 3sqw_A 372 L------ANYIHRIGRTARSGKEGSS 391 (579)
T ss_dssp T------THHHHHHTTSSCTTCCEEE
T ss_pred H------HHhhhhccccccCCCCceE
Confidence 4 6889999988887655543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-07 Score=86.76 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=88.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
++|||+|.++.++++.++.++..+... ...++.+.++.++..+|...|..+++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~ 257 (367)
T 1hv8_A 183 LFSATMPREILNLAKKYMGDYSFIKAK-----INANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASM 257 (367)
T ss_dssp EECSSCCHHHHHHHHHHCCSEEEEECC-----SSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHH
T ss_pred EEeeccCHHHHHHHHHHcCCCeEEEec-----CCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHH
Confidence 479999999999999999998776553 23478888888888888888877764
Q ss_pred ----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHH
Q psy10677 59 ----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 59 ----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~ 116 (317)
+||++++ .|++|+.++||| ++|+|+ .+...+++|+.|... .+.+++
T Consensus 258 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~------~~~~~Vi~~~~~~s~------~~~~Q~ 325 (367)
T 1hv8_A 258 LRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDV------NDLNCVINYHLPQNP------ESYMHR 325 (367)
T ss_dssp HHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCC------SCCSEEEESSCCSCH------HHHHHH
T ss_pred HHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCc------ccCCEEEEecCCCCH------HHhhhc
Confidence 8999987 899999999999 899999 788899999887643 566777
Q ss_pred HHHHCCceeec
Q psy10677 117 FRKEHNITLIG 127 (317)
Q Consensus 117 ~~~~~~i~~~g 127 (317)
.+|.++.+-.|
T Consensus 326 ~GR~~R~g~~g 336 (367)
T 1hv8_A 326 IGRTGRAGKKG 336 (367)
T ss_dssp STTTCCSSSCC
T ss_pred ccccccCCCcc
Confidence 66666554333
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-07 Score=92.85 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=86.8
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCC---CCCCcCcEEEEEEccCCC-c-hhhhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSAN---LAANPNIKQFVEICHEYE-K-PAKWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~---~~~~~~i~q~~~~~~~~~-K-~~~L~~ll~----------------- 58 (317)
+||||+|..+++++..++.+|..+.+.... ......+.+.+..++... + ...+..+..
T Consensus 269 ~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s 348 (563)
T 3i5x_A 269 LFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 348 (563)
T ss_dssp EEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred EEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCc
Confidence 589999999999999999998777654321 134566777776665432 1 111111110
Q ss_pred -----------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCc
Q psy10677 59 -----------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSV 103 (317)
Q Consensus 59 -----------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~ 103 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..|++|+.|..
T Consensus 349 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi------p~v~~VI~~~~p~s 422 (563)
T 3i5x_A 349 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF------PNVHEVLQIGVPSE 422 (563)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC------TTCCEEEEESCCSS
T ss_pred HHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc------ccCCEEEEECCCCc
Confidence 8999998 999999999999 999999 78999999998875
Q ss_pred cccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 104 NHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 104 ~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
. .+++++.++.++..-.|..
T Consensus 423 ~------~~y~Qr~GRagR~g~~g~~ 442 (563)
T 3i5x_A 423 L------ANYIHRIGRTARSGKEGSS 442 (563)
T ss_dssp T------THHHHHHTTSSCTTCCEEE
T ss_pred h------hhhhhhcCccccCCCCceE
Confidence 4 6889999888887555543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-08 Score=80.53 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=67.2
Q ss_pred CCcCcEEEEEEccCCC-chhhhhhhcc---------------------------------CCCCccc--------eeecC
Q psy10677 33 ANPNIKQFVEICHEYE-KPAKWWDSNN---------------------------------GHYPKSV--------RFVLG 70 (317)
Q Consensus 33 ~~~~i~q~~~~~~~~~-K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g 70 (317)
+..+|+|+|+.|+..+ |...|..+++ +||+|++ +|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 5678999999999765 9999988885 9999998 99999
Q ss_pred cccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 71 TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 71 ~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
..++||| ++|+|+ .+...+++|+.|.......-...++++.++.++..-.|
T Consensus 84 ~~~vLvaT~~~~~Gid~------~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g 138 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDV------KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 138 (175)
T ss_dssp SCSEEEECCSCCTTTCC------TTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCE
T ss_pred CCeEEEEecchhcCCCc------ccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCc
Confidence 9999999 999999 78999999998843211122267778777666654334
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.7e-08 Score=79.73 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ +|++|+.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.
T Consensus 60 ~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~------~~~~~Vi~~~~p~~~------~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 60 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI------PDVSHVFNFDMPRSG------DTYLHRIGRTARAGRK 127 (170)
Confidence 9999987 999999999999 999999 788999999988644 5778888887776555
Q ss_pred cCC
Q psy10677 127 GQN 129 (317)
Q Consensus 127 g~~ 129 (317)
|..
T Consensus 128 g~~ 130 (170)
T 2yjt_D 128 GTA 130 (170)
Confidence 543
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.24 E-value=9.2e-08 Score=78.83 Aligned_cols=81 Identities=23% Similarity=0.189 Sum_probs=61.3
Q ss_pred cCcEEEEEEccCCC-chhhhhhhcc---------------------------------CCCCccc--------eeecCcc
Q psy10677 35 PNIKQFVEICHEYE-KPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTA 72 (317)
Q Consensus 35 ~~i~q~~~~~~~~~-K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~ 72 (317)
++|+|+|+.++.++ |.+.|.++++ +||+|++ .|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 47899999998877 9999988875 9999997 9999999
Q ss_pred cceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 73 GFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 73 ~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
++||| ++|+|+ .+...+++|+.|... .+++++.++.++.+-.|
T Consensus 82 ~vlv~T~~~~~G~d~------~~~~~Vi~~~~p~~~------~~~~qr~GR~gR~g~~g 128 (165)
T 1fuk_A 82 RILISTDLLARGIDV------QQVSLVINYDLPANK------ENYIHRIGRGGRFGRKG 128 (165)
T ss_dssp SEEEEEGGGTTTCCC------CSCSEEEESSCCSSG------GGGGGSSCSCC-----C
T ss_pred EEEEEcChhhcCCCc------ccCCEEEEeCCCCCH------HHHHHHhcccccCCCCc
Confidence 99999 999999 788899999988643 34555555555443333
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.9e-07 Score=82.74 Aligned_cols=82 Identities=15% Similarity=0.012 Sum_probs=67.0
Q ss_pred CcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCcccc
Q psy10677 36 NIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTAGF 74 (317)
Q Consensus 36 ~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~~i 74 (317)
+++|+++.++.++|.++|.++++ +||+|+| .|++|+.+|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 47889999999999999998875 9999998 899999999
Q ss_pred eec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 75 LLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 75 Lva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
||| +||+|+ .++..|++|+.|... ..++++.++.++.+-.|..
T Consensus 82 LVaT~va~~Gidi------~~v~~VI~~d~p~s~------~~y~Qr~GRagR~g~~G~~ 128 (300)
T 3i32_A 82 LVATDVAARGLDI------PQVDLVVHYRMPDRA------EAYQHRSGRTGRAGRGGRV 128 (300)
T ss_dssp EEECSTTTCSTTC------CCCSEEEESSCCSST------THHHHHHTCCC-----CEE
T ss_pred EEEechhhcCccc------cceeEEEEcCCCCCH------HHHHHHccCcCcCCCCceE
Confidence 999 999999 788999999998754 6888888877777555543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-06 Score=78.23 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=81.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCch--hhh---------------------hhhc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKP--AKW---------------------WDSN 57 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~--~~L---------------------~~ll 57 (317)
++|||+|..+.+....++.++..+... ....++.+.++.++...+. ..+ ...+
T Consensus 165 ~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 240 (337)
T 2z0m_A 165 LFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLF 240 (337)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTC
T ss_pred EEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHh
Confidence 479999999999999999998777432 2345677777766654321 111 1111
Q ss_pred c----CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHC
Q psy10677 58 N----GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEH 121 (317)
Q Consensus 58 ~----lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~ 121 (317)
. +||++++ +|++|+.++||| ++|+|+ .+...+++|+.|... .+.+++.+|.+
T Consensus 241 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~------~~~~~Vi~~~~~~s~------~~~~Q~~GR~g 308 (337)
T 2z0m_A 241 DNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDI------PLVEKVINFDAPQDL------RTYIHRIGRTG 308 (337)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCC------CCBSEEEESSCCSSH------HHHHHHHTTBC
T ss_pred hhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCc------cCCCEEEEecCCCCH------HHhhHhcCccc
Confidence 1 9999987 999999999999 999999 788899999988643 56777777766
Q ss_pred Cceeec
Q psy10677 122 NITLIG 127 (317)
Q Consensus 122 ~i~~~g 127 (317)
+.+-.|
T Consensus 309 R~g~~g 314 (337)
T 2z0m_A 309 RMGRKG 314 (337)
T ss_dssp GGGCCE
T ss_pred cCCCCc
Confidence 654444
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=98.12 E-value=9.9e-07 Score=75.80 Aligned_cols=82 Identities=15% Similarity=0.005 Sum_probs=64.4
Q ss_pred CcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCcccc
Q psy10677 36 NIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTAGF 74 (317)
Q Consensus 36 ~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~~i 74 (317)
.+++.++.++.++|.+.|.+++. +||+|++ .|++|..+|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 34566666666677777776664 9999998 999999999
Q ss_pred eec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 75 LLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 75 Lva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
||| +||+|+ .++..|++|+.|... ..++++.++.++.+-.|..
T Consensus 85 lvaT~~~~~Gidi------~~v~~Vi~~~~p~~~------~~~~qr~GR~gR~g~~g~~ 131 (212)
T 3eaq_A 85 LVATDVAARGLDI------PQVDLVVHYRLPDRA------EAYQHRSGRTGRAGRGGRV 131 (212)
T ss_dssp EEECTTTTCSSSC------CCBSEEEESSCCSSH------HHHHHHHTTBCCCC--BEE
T ss_pred EEecChhhcCCCC------ccCcEEEECCCCcCH------HHHHHHhcccCCCCCCCeE
Confidence 999 999999 789999999998754 6888888888777655543
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-07 Score=95.29 Aligned_cols=90 Identities=3% Similarity=-0.053 Sum_probs=61.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCC--cccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKT--SVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~--d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|||++.| +|+.| .|+|| |||+||++.+.-. +..+|++|+.|... +.++|+.+++.+.+
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~------r~y~hr~GRTGRqG 533 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESR------RIDNQLRGRSGRQG 533 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSH------HHHHHHHTTSSGGG
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCH------HHHHhhcCccccCC
Confidence 9999887 45555 68999 9999996543222 56789999999876 78999999999888
Q ss_pred eecCCCCCCcccccCCCC----ChhhhcccCcCCCCCC
Q psy10677 125 LIGQNIPKPVKTLDETNI----PSYILGPMKPKTTNNE 158 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~~~l----~~~l~~~l~~~g~~~p 158 (317)
-.|..+ .+.+.+|-.+ ...+...+...|....
T Consensus 534 ~~G~s~--~~vs~eD~l~r~f~~~~~~~~~~~~~~~~~ 569 (844)
T 1tf5_A 534 DPGITQ--FYLSMEDELMRRFGAERTMAMLDRFGMDDS 569 (844)
T ss_dssp CCEEEE--EEEETTSSGGGSSHHHHHHHHHHHHTCCSS
T ss_pred CCCeEE--EEecHHHHHHHHHhHHHHHHHHHhcCCCCc
Confidence 888654 3444454211 2234444444455443
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-06 Score=82.90 Aligned_cols=113 Identities=10% Similarity=-0.039 Sum_probs=76.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC--CCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE--YEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~--~~K~~~L~~ll~-------------------- 58 (317)
+||||++..+++.+..++..+..+.+.... ...++...+...+. .++...|..++.
T Consensus 205 ~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~ 282 (591)
T 2v1x_A 205 GLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQ 282 (591)
T ss_dssp EEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHH
Confidence 489999999999988888754333222221 22344433322221 112333333331
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..|++|++|... ++
T Consensus 283 la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~------p~V~~VI~~~~p~s~------~~ 350 (591)
T 2v1x_A 283 VTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK------PDVRFVIHHSMSKSM------EN 350 (591)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC------SCEEEEEESSCCSSH------HH
T ss_pred HHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc------ccccEEEEeCCCCCH------HH
Confidence 9999997 999999999999 999999 899999999998754 67
Q ss_pred HHHHHHHHCCceeec
Q psy10677 113 EIDSFRKEHNITLIG 127 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g 127 (317)
++++.++.++.+..|
T Consensus 351 y~Qr~GRaGR~G~~g 365 (591)
T 2v1x_A 351 YYQESGRAGRDDMKA 365 (591)
T ss_dssp HHHHHTTSCTTSSCE
T ss_pred HHHHhccCCcCCCCc
Confidence 888887777654333
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=7.9e-07 Score=89.98 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=73.8
Q ss_pred EEccCCCchhhhhhhcc-----------------------------------CCCCccc--------eeecCcccceec-
Q psy10677 42 EICHEYEKPAKWWDSNN-----------------------------------GHYPKSV--------RFVLGTAGFLLS- 77 (317)
Q Consensus 42 ~~~~~~~K~~~L~~ll~-----------------------------------lhg~~~q--------~F~~g~~~iLva- 77 (317)
+++..++|.++|.+.+. |||++.+ +|+.| .|+||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 55666778888887663 9999877 78888 69999
Q ss_pred ---ccccCCcCCCC--------C------------------Ccc-----cccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 78 ---AVSFSLPFRDD--------K------------------TSV-----VTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 78 ---arg~~~~lr~~--------~------------------~d~-----~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
+||+||++... + ..+ .+|++|+.|... ..++++.+++.+.
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~------riy~qr~GRTGRq 570 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESR------RIDNQLRGRSGRQ 570 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSH------HHHHHHHTTSSGG
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCH------HHHHhhccccccC
Confidence 99999954210 0 012 589999999765 7889999999888
Q ss_pred eeecCCCCCCcccccCCCC----ChhhhcccCcCCCCCC
Q psy10677 124 TLIGQNIPKPVKTLDETNI----PSYILGPMKPKTTNNE 158 (317)
Q Consensus 124 ~~~g~~~~~~~~~f~~~~l----~~~l~~~l~~~g~~~p 158 (317)
+-.|... .+.+.+|-.+ +..+...+...|....
T Consensus 571 Gd~G~s~--~fls~eD~l~r~f~~~~~~~~~~~~~~~~~ 607 (853)
T 2fsf_A 571 GDAGSSR--FYLSMEDALMRIFASDRVSGMMRKLGMKPG 607 (853)
T ss_dssp GCCEEEE--EEEETTSGGGGTTCCHHHHTTGGGGCCCTT
T ss_pred CCCeeEE--EEecccHHHHHHhhHHHHHHHHHhhCCCCc
Confidence 8777654 3444444211 4555555666666544
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.2e-06 Score=90.31 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=68.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++.. +.++..++.++..+.+.... ....++.|.++ ..+|...|..+++
T Consensus 220 l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~ 294 (1054)
T 1gku_B 220 LMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEKLGTGGIIYARTGEEAEEIYES 294 (1054)
T ss_dssp EEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHT
T ss_pred EEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHH
Confidence 589999998 77777777776666665554 45567887765 3455566655553
Q ss_pred ---------CCCCccc---eeecCcccceec--------ccccCCcCCCCCCcc-cccCCCCCC
Q psy10677 59 ---------GHYPKSV---RFVLGTAGFLLS--------AVSFSLPFRDDKTSV-VTVPSYPDP 101 (317)
Q Consensus 59 ---------lhg~~~q---~F~~g~~~iLva--------arg~~~~lr~~~~d~-~~v~nf~~p 101 (317)
+||+|++ +|++|+.+|||| +||+|+ .++ ..|++|+.|
T Consensus 295 L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDi------p~VI~~VI~~~~P 352 (1054)
T 1gku_B 295 LKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL------PERIRFAVFVGCP 352 (1054)
T ss_dssp TTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCC------TTTCCEEEEESCC
T ss_pred HhhccCeeEEeccHHHHHHHHHcCCCcEEEEecCCCCeeEecccc------CCcccEEEEeCCC
Confidence 8999987 999999999996 799999 784 889999988
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=4.1e-05 Score=74.62 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=74.5
Q ss_pred CcccCCChHHHHHHHHh--cCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEF--LSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~--l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
++|||.+..+.+-.... +.+|..+ +.... ..++.. ..++..++...|.+++.
T Consensus 179 ~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~---r~~l~~--~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l 252 (523)
T 1oyw_A 179 ALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIRY--MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (523)
T ss_dssp EEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC---CTTEEE--EEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC---CCceEE--EEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 47999999876544333 3566543 32221 234432 33344455555555543
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..|++|+.|... +++
T Consensus 253 ~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~------p~v~~VI~~~~p~s~------~~y 320 (523)
T 1oyw_A 253 AARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK------PNVRFVVHFDIPRNI------ESY 320 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC------TTCCEEEESSCCSSH------HHH
T ss_pred HHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc------cCccEEEEECCCCCH------HHH
Confidence 9999997 999999999999 999999 889999999988754 677
Q ss_pred HHHHHHHCCceeec
Q psy10677 114 IDSFRKEHNITLIG 127 (317)
Q Consensus 114 i~~~~~~~~i~~~g 127 (317)
+++.++.++.+-.|
T Consensus 321 ~Qr~GRaGR~g~~~ 334 (523)
T 1oyw_A 321 YQETGRAGRDGLPA 334 (523)
T ss_dssp HHHHTTSCTTSSCE
T ss_pred HHHhccccCCCCCc
Confidence 78777776654333
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=1.3e-05 Score=80.01 Aligned_cols=143 Identities=8% Similarity=-0.062 Sum_probs=96.1
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEE-EEEEccCCCchhhhhhhcc----------------------
Q psy10677 2 WSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-FVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q-~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+|+|...+.+++.+.|--+ .+.+. .+ .....+.+ ..+++...+|..++...+.
T Consensus 415 MTGTa~te~~Ef~~iY~l~--vv~IP-tn-kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~L 490 (822)
T 3jux_A 415 MTGTAKTEESEFVQVYGME--VVVIP-TH-KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELL 490 (822)
T ss_dssp EESSCGGGHHHHHHHSCCC--EEECC-CS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHH
T ss_pred ECCCCchHHHHHHHHhCCe--EEEEC-CC-CCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHH
Confidence 5899999999998887433 34443 33 33344554 3456677778888877664
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCC--cccccCCCCCCCccccCCCCH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKT--SVVTVPSYPDPSVNHLQGKTK 111 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~--d~~~v~nf~~p~~~~i~~~~~ 111 (317)
|||+..+ .|+.| .|+|| +||+||++...-. +..+|++|+.|... .
T Consensus 491 s~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~------r 562 (822)
T 3jux_A 491 SSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESR------R 562 (822)
T ss_dssp HHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSH------H
T ss_pred HHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCH------H
Confidence 8998666 44445 69999 9999997644322 55689999999866 7
Q ss_pred HHHHHHHHHCCceeecCCCCCCcccccCC----CCChhhhcccCcCCCCCC
Q psy10677 112 EEIDSFRKEHNITLIGQNIPKPVKTLDET----NIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 112 ~~i~~~~~~~~i~~~g~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p 158 (317)
.++++.+++.+.+-.|..+ .+.+.+|- .-+..+...+...|...-
T Consensus 563 ~y~qriGRTGRqG~~G~a~--~fvsleD~l~r~fg~~~~~~~m~~~~~~~~ 611 (822)
T 3jux_A 563 IDNQLRGRAGRQGDPGESI--FFLSLEDDLLRIFGSEQIGKVMNILKIEEG 611 (822)
T ss_dssp HHHHHHTTSSCSSCCCEEE--EEEETTSHHHHHTTHHHHHHHHHHSSCCSS
T ss_pred HHHHhhCccccCCCCeeEE--EEechhHHHHHhhhHHHHHHHHHHcCCCCC
Confidence 8999999999888888654 34444441 123455555555666544
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=2.6e-05 Score=73.20 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=73.3
Q ss_pred CcccC-CChHHH-HHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSAT-WPREIQ-KLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT-~~~~v~-~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
+|||| +|+.+. .+.+.++. +.+.... ....++.|.++.++ |.+.|..+++
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~~~~~~~~---~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~ 269 (414)
T 3oiy_A 198 VSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISSR---SKEKLVELLEIFRDGILIFAQTEEEGKELY 269 (414)
T ss_dssp ESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEEEEEESSC---CHHHHHHHHHHHCSSEEEEESSHHHHHHHH
T ss_pred EEecCCCcchhHHHHHHHhhc----cCcCccc-cccccchheeeccC---HHHHHHHHHHHcCCCEEEEECCHHHHHHHH
Confidence 58999 787766 44444443 2333333 45677888877663 4455554443
Q ss_pred -------------CCCCccc--eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCC--CccccCCCCHH
Q psy10677 59 -------------GHYPKSV--RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDP--SVNHLQGKTKE 112 (317)
Q Consensus 59 -------------lhg~~~q--~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p--~~~~i~~~~~~ 112 (317)
+||+..+ +|++|+.+|||| +||+|+ .+ +..|++|+.| ... ..
T Consensus 270 ~~L~~~~~~~~~~~h~~~r~~~~f~~g~~~vLvat~s~T~~~~~GiDi------p~~v~~VI~~~~p~~~~~------~~ 337 (414)
T 3oiy_A 270 EYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDL------PERIKYVIFWGTPSGPDV------YT 337 (414)
T ss_dssp HHHHHTTCCEEESSSCHHHHHHHHHTTSCSEEEEECCTTCCCCCCCCC------TTTCCEEEEESCCTTTCH------HH
T ss_pred HHHHHcCCceehhhcCcchHHHHHhCCCCeEEEEecCcCchhhccCcc------ccccCEEEEECCCCCCCH------HH
Confidence 6775322 899999999997 899999 78 8999999999 433 68
Q ss_pred HHHHHHHHCCce
Q psy10677 113 EIDSFRKEHNIT 124 (317)
Q Consensus 113 ~i~~~~~~~~i~ 124 (317)
++++.++.++.+
T Consensus 338 y~qr~GR~gR~g 349 (414)
T 3oiy_A 338 YIQASGRSSRIL 349 (414)
T ss_dssp HHHHHGGGCCEE
T ss_pred HHHHhCccccCC
Confidence 899998888775
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=97.33 E-value=4e-05 Score=80.96 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=63.5
Q ss_pred CcccC-CChHHHH-HHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSAT-WPREIQK-LAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT-~~~~v~~-l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
+|||| .|+.++. +.+.++. +.+.... ....++.|.++.+ +|...|.++++
T Consensus 255 l~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 255 VSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIFRDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp EECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHHCSSEEEEESSSHHHHHHH
T ss_pred EEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhcCCCEEEEECcHHHHHHHH
Confidence 58999 7877763 3344333 4455444 4667888888776 35555555553
Q ss_pred -------------CCCCccc--eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCC
Q psy10677 59 -------------GHYPKSV--RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPS 102 (317)
Q Consensus 59 -------------lhg~~~q--~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~ 102 (317)
+||+..+ +|++|+.+|||| +||+|+ .+ +..|++|++|.
T Consensus 327 ~~L~~~g~~~~~~lhg~rr~l~~F~~G~~~VLVatas~TdvlarGIDi------p~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 327 EYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDL------PERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHTTCCEEESSSSHHHHHHHHHHTSCSEEEEETTTHHHHCCSCCC------TTTCCEEEEESCCE
T ss_pred HHHHhCCCCeeeEecCcHHHHHHHHCCCCCEEEEecCCCCeeEecCcC------CCCCCEEEEECCCC
Confidence 6774322 899999999998 899999 88 89999999997
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=97.32 E-value=2.9e-05 Score=74.16 Aligned_cols=109 Identities=8% Similarity=-0.068 Sum_probs=73.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCC-C----C----CcCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL-A----A----NPNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~----~----~~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||+|.++..+ +..++..+.+...-. . . ...-.+.+++|+..+..+.+...|+ +||++
T Consensus 146 ~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~ 222 (451)
T 2jlq_A 146 FMTATPPGSTDPF---PQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT 222 (451)
T ss_dssp EECSSCTTCCCSS---CCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT
T ss_pred EEccCCCccchhh---hcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH
Confidence 5899999876543 345665555432110 0 0 0011356778887766666666664 99998
Q ss_pred cc----eeecCcccceec----ccccCCcCCCCCCcccccCCCC--------------------CCCccccCCCCHHHHH
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP--------------------DPSVNHLQGKTKEEID 115 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~--------------------~p~~~~i~~~~~~~i~ 115 (317)
.+ +|++|+.+|||| +||+|+ .+ ..|++|+ .|.. ..++++
T Consensus 223 ~~~~~~~f~~g~~~vLVaT~v~~~GiDi------p~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s------~~~y~Q 289 (451)
T 2jlq_A 223 FDTEYPKTKLTDWDFVVTTDISEMGANF------RA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT------PASAAQ 289 (451)
T ss_dssp HHHHGGGGGSSCCSEEEECGGGGSSCCC------CC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC------HHHHHH
T ss_pred HHHHHHhhccCCceEEEECCHHHhCcCC------CC-CEEEECCCcccccccccccceeeecccccCC------HHHHHH
Confidence 87 999999999999 999999 56 7777776 3322 257888
Q ss_pred HHHHHCCcee
Q psy10677 116 SFRKEHNITL 125 (317)
Q Consensus 116 ~~~~~~~i~~ 125 (317)
+.++.++..-
T Consensus 290 r~GRaGR~g~ 299 (451)
T 2jlq_A 290 RRGRIGRNPA 299 (451)
T ss_dssp HHTTSSCCTT
T ss_pred hccccCCCCC
Confidence 8887776643
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00011 Score=73.65 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=58.3
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
.+.+++|......+.|...|. +||+++| +|++|+++|||| +||+|+ .++..+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDi------p~v~lVi~ 519 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDI------PEVSLVAI 519 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCC------TTEEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCccc------CCCCEEEE
Confidence 356667776666666666664 8999987 799999999998 999999 78888988
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
++.+.... ..-...++++.++.++.
T Consensus 520 ~d~d~~G~-p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 520 LDADKEGF-LRSERSLIQTIGRAARN 544 (661)
T ss_dssp TTTTCCTT-TTSHHHHHHHHHTTTTS
T ss_pred eCcccccC-CCCHHHHHHHhCcccCC
Confidence 88632110 00126789999988875
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=97.05 E-value=5.9e-05 Score=72.23 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=67.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCC-CC-------cCcEEEEEEccCCCchhhhhhhcc--------CCCCcc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLA-AN-------PNIKQFVEICHEYEKPAKWWDSNN--------GHYPKS 64 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~-~~-------~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~~ 64 (317)
+||||+|.++..++.. +.|+.+........ .. ..-.+..++|+..+..+.+...|+ +||+.-
T Consensus 148 l~SAT~~~~~~~~~~~--~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R 225 (459)
T 2z83_A 148 FMTATPPGTTDPFPDS--NAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSY 225 (459)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCC
T ss_pred EEEcCCCcchhhhccC--CCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHH
Confidence 5899999887655432 45654321111000 00 012356778887766666666664 999744
Q ss_pred c----eeecCcccceec----ccccCCcCCCCCCcccccCC--------------------CCCCCccccCCCCHHHHHH
Q psy10677 65 V----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS--------------------YPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 65 q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n--------------------f~~p~~~~i~~~~~~~i~~ 116 (317)
+ +|++|+.+|||| ++|+|+ .+ ..|++ |+.|... .+++++
T Consensus 226 ~~~~~~f~~g~~~iLVaT~v~~~GiDi------p~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~------~~~~QR 292 (459)
T 2z83_A 226 DTEYPKCKNGDWDFVITTDISEMGANF------GA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITS------ASAAQR 292 (459)
T ss_dssp CCCGGGSSSCCCSEEEESSCC---CCC------SC-SEEEECCEECCEEEECSSSCEEEECSCEECCH------HHHHHH
T ss_pred HHHHhhccCCCceEEEECChHHhCeec------CC-CEEEECCcccccccccccccccccccCCCCCH------HHHHHh
Confidence 3 999999999999 999999 44 55555 4444433 678888
Q ss_pred HHHHCCce
Q psy10677 117 FRKEHNIT 124 (317)
Q Consensus 117 ~~~~~~i~ 124 (317)
.++.++..
T Consensus 293 ~GRaGR~g 300 (459)
T 2z83_A 293 RGRVGRNP 300 (459)
T ss_dssp HTTSSCCT
T ss_pred ccccCCCC
Confidence 88877664
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=96.99 E-value=9e-05 Score=73.91 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=58.1
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc-eeecCcccceec----ccccCCcCCCCC---CcccccCCCC--
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV-RFVLGTAGFLLS----AVSFSLPFRDDK---TSVVTVPSYP-- 99 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q-~F~~g~~~iLva----arg~~~~lr~~~---~d~~~v~nf~-- 99 (317)
.+.+++|+..+..+.+...|+ +||+|+| +|+++..+|||| +||+|++.+-+. ....++.||+
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDyd 476 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLD 476 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccc
Confidence 456778887777777777664 9999999 777777899999 999998322111 1223455777
Q ss_pred ---------CCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 100 ---------DPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 100 ---------~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
.|... ++++++.+|.++ ...|.
T Consensus 477 P~~gl~~~~~P~s~------~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 477 PTFTIETTTVPQDA------VSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp SSCEEEEEEEECBH------HHHHHHHTTBCS-SSCEE
T ss_pred cccccccccCcCCH------HHHHHHhccCCC-CCCCE
Confidence 44433 688888888877 44553
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0013 Score=65.51 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=52.6
Q ss_pred CCCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
..|++-|.+|+-.++ ..++ .+ +.||+|||||.+.. -++.++.+. +.+.|+.+||..-|.++.+.+
T Consensus 188 ~~LN~~Q~~AV~~al--~~~~~~l----I~GPPGTGKT~ti~-~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 188 TCLDTSQKEAVLFAL--SQKELAI----IHGPPGTGKTTTVV-EIILQAVKQ-------GLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp TTCCHHHHHHHHHHH--HCSSEEE----EECCTTSCHHHHHH-HHHHHHHHT-------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh--cCCCceE----EECCCCCCHHHHHH-HHHHHHHhC-------CCeEEEEcCchHHHHHHHHHH
Confidence 467999999999988 6665 45 78999999998754 344445442 568999999999999888776
Q ss_pred HHH
Q psy10677 244 SIF 246 (317)
Q Consensus 244 ~~l 246 (317)
...
T Consensus 254 ~~~ 256 (646)
T 4b3f_X 254 ALC 256 (646)
T ss_dssp HHT
T ss_pred Hhc
Confidence 554
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=96.87 E-value=6.4e-05 Score=74.71 Aligned_cols=115 Identities=8% Similarity=-0.036 Sum_probs=73.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCC----CC-CCC----cCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSA----NL-AAN----PNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~----~~-~~~----~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||+|..+++++. .+|..+.+... .. ... ..-.+.+++|+..+..+.+...|+ +||+.
T Consensus 313 l~SAT~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 389 (618)
T 2whx_A 313 FMTATPPGSTDPFPQ---SNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT 389 (618)
T ss_dssp EECSSCTTCCCSSCC---CSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTT
T ss_pred EEECCCchhhhhhhc---cCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHH
Confidence 589999998775544 35655555431 10 000 112356778887777777766664 99974
Q ss_pred cc----eeecCcccceec----ccccCCcCCCC-------------CCcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLPFRDD-------------KTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~lr~~-------------~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
.+ +|++|+.+|||| +||+|++..-+ +.+...+++|+.|... ++++++.++..+
T Consensus 390 R~~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~------~~yiQR~GRaGR 463 (618)
T 2whx_A 390 FDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTP------ASAAQRRGRIGR 463 (618)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCH------HHHHHHHTTSSC
T ss_pred HHHHHHhhcCCCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCH------HHHHHhccccCC
Confidence 43 999999999999 99999942211 1111123555555543 688999888887
Q ss_pred ce
Q psy10677 123 IT 124 (317)
Q Consensus 123 i~ 124 (317)
..
T Consensus 464 ~g 465 (618)
T 2whx_A 464 NP 465 (618)
T ss_dssp CT
T ss_pred CC
Confidence 73
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0004 Score=73.76 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=63.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCC---------------------cCcEEEEEEccCCCchhhhhhhcc-
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAAN---------------------PNIKQFVEICHEYEKPAKWWDSNN- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~---------------------~~i~q~~~~~~~~~K~~~L~~ll~- 58 (317)
++|||.++....++...+.++..|...+.. ... ..-.|.+++|+..+..+.+...|+
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~ 834 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR-RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 834 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB-CBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC-ccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 489998888888888777766544332211 000 011455666766555554444442
Q ss_pred ---------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCC
Q psy10677 59 ---------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPD 100 (317)
Q Consensus 59 ---------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~ 100 (317)
+||+|++ +|++|+.+|||| ++|+|+ .+...++.++.
T Consensus 835 ~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi------p~v~~VIi~~~ 891 (1151)
T 2eyq_A 835 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI------PTANTIIIERA 891 (1151)
T ss_dssp HCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC------TTEEEEEETTT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc------cCCcEEEEeCC
Confidence 9999997 899999999999 999999 77887776654
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0022 Score=64.20 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=50.0
Q ss_pred Cchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
++.|.+++..+.. ..|. ... +.+.||||||+++.- ++.++. . .+|||+|+..+|.|.++.++
T Consensus 10 ~~~q~~ai~~l~~~~~~~~~~~~----l~g~tgs~kt~~~a~-~~~~~~---------~-~~lvv~~~~~~A~ql~~el~ 74 (664)
T 1c4o_A 10 KGDQPKAIAGLVEALRDGERFVT----LLGATGTGKTVTMAK-VIEALG---------R-PALVLAPNKILAAQLAAEFR 74 (664)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEE----EEECTTSCHHHHHHH-HHHHHT---------C-CEEEEESSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCCCcEE----EEcCCCcHHHHHHHH-HHHHhC---------C-CEEEEecCHHHHHHHHHHHH
Confidence 9999999887652 1232 355 789999999987642 333331 2 38999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 75 ~~~~~ 79 (664)
T 1c4o_A 75 ELFPE 79 (664)
T ss_dssp HHCTT
T ss_pred HHCCC
Confidence 99753
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=8.9e-05 Score=70.61 Aligned_cols=108 Identities=11% Similarity=0.009 Sum_probs=63.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEE-EEc--CCCC-CCC----cCcEEEEEEccCCCchhhhhhhcc--------CCCCcc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQL-NVG--SANL-AAN----PNIKQFVEICHEYEKPAKWWDSNN--------GHYPKS 64 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i-~v~--~~~~-~~~----~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~~ 64 (317)
+||||+|+.+.+++.. ..|+.. ... .... ... ..-.+.+++|+..+..+.+...|+ +||+..
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R 212 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTF 212 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSC
T ss_pred EEeCCCCchhhhhhhc--CCCeeEeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhH
Confidence 5899999887765542 233322 111 1110 000 112467788887766666666554 999644
Q ss_pred c----eeecCcccceec----ccccCCcCCCCCCcccccC-------------------CCCCCCccccCCCCHHHHHHH
Q psy10677 65 V----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVP-------------------SYPDPSVNHLQGKTKEEIDSF 117 (317)
Q Consensus 65 q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~-------------------nf~~p~~~~i~~~~~~~i~~~ 117 (317)
+ +|++|+.+|||| ++|+|+ . +..|+ +|+.|... .+++++.
T Consensus 213 ~~~~~~F~~g~~~vLVaT~v~e~GiDi------p-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~------~~~~Qr~ 279 (440)
T 1yks_A 213 EREYPTIKQKKPDFILATDIAEMGANL------C-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA------SSAAQRR 279 (440)
T ss_dssp C--------CCCSEEEESSSTTCCTTC------C-CSEEEECCEEEEEEEETTTTEEEEEEEEECCH------HHHHHHH
T ss_pred HHHHhhhcCCCceEEEECChhheeecc------C-ceEEEeCCccceeeecccccceeeccccccCH------HHHHHhc
Confidence 4 999999999999 999999 3 44443 35555432 5777877
Q ss_pred HHHCCc
Q psy10677 118 RKEHNI 123 (317)
Q Consensus 118 ~~~~~i 123 (317)
++.++.
T Consensus 280 GR~GR~ 285 (440)
T 1yks_A 280 GRIGRN 285 (440)
T ss_dssp TTSSCC
T ss_pred cccCCC
Confidence 777665
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0025 Score=63.30 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-.++ .+.-.+ +.||+|||||... .-++.++.+. .+.++++++||...|.++.+.+.+
T Consensus 180 ~ln~~Q~~av~~~l--~~~~~l----i~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL--QRPLSL----IQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH--TCSEEE----EECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh--cCCCeE----EECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 35999999999988 777778 9999999999764 3445555542 356899999999999998887765
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=60.96 Aligned_cols=78 Identities=6% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCCCCcCCCCCCCCchhhhhccccccc--c-CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC
Q psy10677 155 TNNENNHNKNKKCGDKESKNWTIPLNF--Q-AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP 231 (317)
Q Consensus 155 ~~~p~~~~~~~~~t~iQ~~~ip~~l~~--~-g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P 231 (317)
|..++....+..+++-|.+|+-.+++. + ...++ +.|+.|||||.. +..++..+.... ...+++++|
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~l----i~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~ 82 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVT----INGPAGTGATTL-TKFIIEALISTG------ETGIILAAP 82 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEE----EECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEES
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEE----EEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecC
Confidence 334444445555699999999877621 1 23788 999999999953 345666665531 247899999
Q ss_pred cHHHHHHHHHHH
Q psy10677 232 TRELAQQIQAVI 243 (317)
Q Consensus 232 treLa~Qi~~~~ 243 (317)
|...|..+.+.+
T Consensus 83 T~~Aa~~l~~~~ 94 (459)
T 3upu_A 83 THAAKKILSKLS 94 (459)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHhhh
Confidence 999887776544
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00027 Score=70.85 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=67.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcC----CCC-CC----CcCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGS----ANL-AA----NPNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~----~~~-~~----~~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||+|..+.+++.. +.|+. .+.. ... .. ...-.+.+++|+..+..+.+...|+ +||+.
T Consensus 368 ~~SAT~~~~i~~~~~~--~~~i~-~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~e 444 (673)
T 2wv9_A 368 FMTATPPGTSDPFPDT--NSPVH-DVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKS 444 (673)
T ss_dssp EECSSCTTCCCSSCCC--SSCEE-EEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred EEcCCCChhhhhhccc--CCceE-EEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHH
Confidence 5899999887665432 23432 2221 110 00 0112467788887766666666654 99964
Q ss_pred cc----eeecCcccceec----ccccCCcCCCCCCcccccCC--------------------CCCCCccccCCCCHHHHH
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS--------------------YPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n--------------------f~~p~~~~i~~~~~~~i~ 115 (317)
.+ +|++|+.+|||| ++|+|+ . +..|++ |+.|... .++++
T Consensus 445 R~~v~~~F~~g~~~VLVaTdv~e~GIDi------p-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~------~~y~Q 511 (673)
T 2wv9_A 445 YDTEYPKCKNGDWDFVITTDISEMGANF------G-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITS------ASAAQ 511 (673)
T ss_dssp HHHHGGGGGTCCCSEEEECGGGGTTCCC------C-CSEEEECCEECCEEEECSTTCEEEECCSEECCH------HHHHH
T ss_pred HHHHHHHHHCCCceEEEECchhhcceee------C-CcEEEECCCcccceeeecccccceecccCCCCH------HHHHH
Confidence 33 999999999999 999999 4 555554 3334322 67788
Q ss_pred HHHHHCCc
Q psy10677 116 SFRKEHNI 123 (317)
Q Consensus 116 ~~~~~~~i 123 (317)
+.++..+.
T Consensus 512 r~GRaGR~ 519 (673)
T 2wv9_A 512 RRGRVGRN 519 (673)
T ss_dssp HHTTSSCC
T ss_pred HhhccCCC
Confidence 87777765
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0021 Score=67.97 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=44.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccc-cCC-CCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNH-LQG-KTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~-i~~-~~~~~i~~~~~~~~i~ 124 (317)
+||+|++ .|++|..+|||| ++|+|+ .++..|+++..+.... ... -..+++++.+|.++.+
T Consensus 510 ~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi------P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 510 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM------PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp ECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--------CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred ecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC------CCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 6999998 899999999999 999999 6777788776443221 001 1267899999988776
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0052 Score=60.89 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=54.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+. . .+..++ +.|+.|||||...+--+...+.... ...-+.|++++|+..|.++.+.+.+
T Consensus 9 ~Ln~~Q~~av~--~--~~~~~l----V~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 9 SLNDKQREAVA--A--PRSNLL----VLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TCCHHHHHHHT--C--CSSCEE----EEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh--C--CCCCEE----EEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHH
Confidence 45999999996 2 456688 9999999999876655555444321 1224899999999999999999988
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 77 ~~~ 79 (647)
T 3lfu_A 77 LMG 79 (647)
T ss_dssp HHC
T ss_pred Hhc
Confidence 764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0013 Score=66.95 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=44.2
Q ss_pred CCCCccc--------eee-----cCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccC-----------CCC
Q psy10677 59 GHYPKSV--------RFV-----LGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQ-----------GKT 110 (317)
Q Consensus 59 lhg~~~q--------~F~-----~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~-----------~~~ 110 (317)
+||+|++ .|+ +|..+|+|| ++|+|+ .++..|++++++...... -.+
T Consensus 344 lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidI------p~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S 417 (773)
T 2xau_A 344 LYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI------DGIVYVVDPGFSKQKVYNPRIRVESLLVSPIS 417 (773)
T ss_dssp ECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCC------TTEEEEEECSEEEEEEEETTTTEEEEEEEECC
T ss_pred eCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCc------CCeEEEEeCCCccceeeccccCccccccccCC
Confidence 8999997 898 999999999 999999 788888887652110000 112
Q ss_pred -HHHHHHHHHHCCc
Q psy10677 111 -KEEIDSFRKEHNI 123 (317)
Q Consensus 111 -~~~i~~~~~~~~i 123 (317)
.+.+++.++.++.
T Consensus 418 ~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 418 KASAQQRAGRAGRT 431 (773)
T ss_dssp HHHHHHHHHGGGSS
T ss_pred HHHHHhhccccCCC
Confidence 6788888888876
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0015 Score=66.51 Aligned_cols=141 Identities=10% Similarity=-0.054 Sum_probs=88.1
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEE-EEEEccCCCchhhhhhhcc-----------------------
Q psy10677 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-FVEICHEYEKPAKWWDSNN----------------------- 58 (317)
Q Consensus 3 SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q-~~~~~~~~~K~~~L~~ll~----------------------- 58 (317)
+.|...+..++.+.|--+ .+.|. .+ .....+.+ .++++..++|..+|...+.
T Consensus 402 TGTa~te~~Ef~~iY~l~--vv~IP-tn-~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls 477 (922)
T 1nkt_A 402 TGTAQTEAAELHEIYKLG--VVSIP-TN-MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLS 477 (922)
T ss_dssp ESCCGGGHHHHHHHHCCE--EEECC-CS-SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred ccCchhHHHHHHHHhCCC--eEEeC-CC-CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 677777788888877322 34442 33 23233333 2455666678877766552
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCC------------CCc-----------
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDD------------KTS----------- 91 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~------------~~d----------- 91 (317)
|||++.+ .|+.| .|+|| +||+||++... ..+
T Consensus 478 ~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (922)
T 1nkt_A 478 RQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAA 555 (922)
T ss_dssp HHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHH
T ss_pred HHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHH
Confidence 9999876 67777 68999 99999976421 000
Q ss_pred ------------------c-----cccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCC----CCh
Q psy10677 92 ------------------V-----VTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETN----IPS 144 (317)
Q Consensus 92 ------------------~-----~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~----l~~ 144 (317)
+ .+|++|+.|... ..+++..+++.+.+-.|... .+.|.+|-- -+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~------riy~qr~GRTGRqGdpG~s~--fflSleD~l~r~f~~~ 627 (922)
T 1nkt_A 556 WHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESR------RIDNQLRGRSGRQGDPGESR--FYLSLGDELMRRFNGA 627 (922)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSH------HHHHHHHHTSSGGGCCEEEE--EEEETTSHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCH------HHHHHHhcccccCCCCeeEE--EEechhHHHHHHhhhH
Confidence 1 488999998765 78899999999888888654 344444421 123
Q ss_pred hhhcccCcCCCCC
Q psy10677 145 YILGPMKPKTTNN 157 (317)
Q Consensus 145 ~l~~~l~~~g~~~ 157 (317)
.+...+...|...
T Consensus 628 ~~~~~~~~~~~~~ 640 (922)
T 1nkt_A 628 ALETLLTRLNLPD 640 (922)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCC
Confidence 3444444555543
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0049 Score=62.97 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-.++ .+.-.+ +.||+|||||... .-++.++... .+.++++++||..-|.++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l--~~~~~l----I~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL--QRPLSL----IQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHH--TSSEEE----EECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc--cCCeEE----EEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 35999999999988 777778 9999999999764 4455555542 356899999999999988877765
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.006 Score=59.97 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=49.3
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
+++-|.+++..++ .+..++ +.|+.|||||.. +..++..+.. .+..+++++||...|..+.+.
T Consensus 190 L~~~Q~~Av~~~~--~~~~~~----I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 190 LSEEQASVLDQLA--GHRLVV----LTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp CCHHHHHHHHHHT--TCSEEE----EECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--hCCEEE----EEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhh
Confidence 4999999999999 888899 999999999965 2334444443 256899999999999887653
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0059 Score=62.38 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=53.5
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-.++ .+.-++ +.||+|||||.... -++.++.+. .+.+.|+++||..-|.++.+.+.+
T Consensus 360 ~Ln~~Q~~Av~~~l--~~~~~l----I~GppGTGKT~~i~-~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL--QRPLSL----IQGPPGTGKTVTSA-TIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT--TCSEEE----EECSTTSSHHHHHH-HHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--cCCCEE----EECCCCCCHHHHHH-HHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 45999999999998 776678 99999999997643 344444431 246899999999999999888876
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0022 Score=61.95 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=33.3
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|.+.|. +||+|++ +|++ |..+|||| ++|+|+
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi- 469 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI- 469 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc-
Confidence 345677776666666665552 5788987 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... ..++++.+|
T Consensus 470 -----p~v~~VI~~d~p~s~------~~~~Qr~GR 493 (556)
T 4a2p_A 470 -----VQCNLVVLYEYSGNV------TKMIQVRGR 493 (556)
T ss_dssp --------CEEEEETCCSCH------HHHHHC---
T ss_pred -----hhCCEEEEeCCCCCH------HHHHHhcCC
Confidence 899999999998654 677777777
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.00078 Score=63.84 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=51.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEc----CCCC-CCC----cCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVG----SANL-AAN----PNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~----~~~~-~~~----~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||++..+.++... +.|+ +.+. .... ... ..-.+.+++|+..+..+.+...|+ +||++
T Consensus 129 ~~SAT~~~~~~~~~~~--~~~i-~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 205 (431)
T 2v6i_A 129 FMTATPPGTTEAFPPS--NSPI-IDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT 205 (431)
T ss_dssp EEESSCTTCCCSSCCC--SSCC-EEEECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT
T ss_pred EEeCCCCcchhhhcCC--CCce-eeccccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 5899999876654432 2232 2221 1110 000 112356778887666666665554 99986
Q ss_pred cc----eeecCcccceec----ccccCCc
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLP 84 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~ 84 (317)
.+ +|++|+.+|||| ++|+|+|
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 65 999999999999 9999994
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.02 Score=60.01 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
+||+|++ .|++|.++|||| ++|+|+ .+...|++ |+.+..... -..++++..++.++
T Consensus 412 ~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDi------P~~~vVI~~~~kfd~~~~rp~--s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 412 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM------PAKTVVFTSVRKWDGQQFRWV--SGGEYIQMSGRAGR 483 (1010)
T ss_dssp ESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTC------CBSEEEESCSEEECSSCEEEC--CHHHHHHHHTTBCC
T ss_pred ECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCC------CCceEEEeCCcccCCcCCccC--CHHHHhHhhhhccc
Confidence 3899987 899999999999 999999 66677776 765321000 12577777777766
Q ss_pred ce
Q psy10677 123 IT 124 (317)
Q Consensus 123 i~ 124 (317)
.+
T Consensus 484 ~G 485 (1010)
T 2xgj_A 484 RG 485 (1010)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.02 Score=57.24 Aligned_cols=70 Identities=7% Similarity=-0.103 Sum_probs=53.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+++-. .+..++ +.|+.|||||.+..-=+...+.... ......|+++.|+..|.++.+.+.+.
T Consensus 3 L~~~Q~~av~~----~~~~~l----V~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF----VTGPCL----VLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC----CSSEEE----ECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 58999998854 346778 8999999999877665555554311 12357999999999999999999887
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 71 l~ 72 (673)
T 1uaa_A 71 LG 72 (673)
T ss_dssp SC
T ss_pred cC
Confidence 64
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.036 Score=55.92 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=53.1
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+|+-. .+..++ +.|+.|||||.+..-=+...+.... ......|+++.|+..|..+.+.+.++
T Consensus 12 Ln~~Q~~av~~----~~g~~l----V~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 12 LNKEQQEAVRT----TEGPLL----IMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp SCHHHHHHHHC----CSSCEE----EEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 49999998854 345778 9999999999887666555554321 12347999999999999999988887
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 80 l~ 81 (724)
T 1pjr_A 80 LG 81 (724)
T ss_dssp HG
T ss_pred hc
Confidence 54
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0077 Score=62.84 Aligned_cols=57 Identities=14% Similarity=0.004 Sum_probs=49.4
Q ss_pred CCCCccc--------eeecCc--ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGT--AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~--~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||+|++ +|++|+ ++|||| ++|+|+ .+...+++|+.|... ..++++.++.++++
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl------~~~~~VI~~d~p~~~------~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNF------QFASHMVMFDLPFNP------DLLEQRIGRLDRIG 601 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCC------TTCCEEECSSCCSSH------HHHHHHHHTTSCSS
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCc------ccCcEEEEecCCCCH------HHHHHHhhccccCC
Confidence 9999998 999998 999999 999999 788999999988644 67888888888876
Q ss_pred eec
Q psy10677 125 LIG 127 (317)
Q Consensus 125 ~~g 127 (317)
-.|
T Consensus 602 q~~ 604 (968)
T 3dmq_A 602 QAH 604 (968)
T ss_dssp SCS
T ss_pred CCc
Confidence 554
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0074 Score=60.37 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=57.5
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
.+.+++|......+.|...|. +||+|++ +|++|+++|||| ++|+|+ .++..+++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDi------p~v~lVI~ 513 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDI------PEVSLVAI 513 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCC------TTEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccC------CCCCEEEE
Confidence 355666766666666666554 8999987 799999999998 999999 78888988
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
++.+..... .-..+++++.++.++.
T Consensus 514 ~d~d~~G~p-~s~~~~iQr~GRagR~ 538 (664)
T 1c4o_A 514 LDADKEGFL-RSERSLIQTIGRAARN 538 (664)
T ss_dssp TTTTSCSGG-GSHHHHHHHHGGGTTS
T ss_pred eCCcccCCC-CCHHHHHHHHCccCcC
Confidence 886321100 0125788888888775
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.038 Score=59.09 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=70.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++|+-|.++|-. .+.+++ +.|..|||||.+.+--++..+..... ....-+.|++++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~----~~~~~~----v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS----TGQDIL----VAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC----CSSCEE----EEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCCEE----EEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHH
Confidence 459999998753 678999 99999999999887777766654210 11234899999999999999988887
Q ss_pred HhcCC-CcEEEEEECCCCHHHHHHHccCcEEECcHHHHH
Q psy10677 246 FSRTM-RIRHACLYGGTSKMYQVILLRILTSATNTSLGI 283 (317)
Q Consensus 246 l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~ 283 (317)
..... +-. -.......+...+.++-|+|=..++.
T Consensus 80 ~l~~~~~~~----~~~~~~~~~~~~~~~~~i~T~hsf~~ 114 (1232)
T 3u4q_A 80 ALEKELVQR----PGSLHIRRQLSLLNRASISTLHSFCL 114 (1232)
T ss_dssp HHHHHHHHS----TTCHHHHHHHHHTTTSEEECHHHHHH
T ss_pred HHHHHhhcC----cchHHHHHHHhccCCCeEEeHHHHHH
Confidence 54321 000 00112344555566678888666653
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.0098 Score=59.41 Aligned_cols=70 Identities=7% Similarity=-0.001 Sum_probs=51.8
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------CCCC--------ccc--------eeecCcccceec----ccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------GHYP--------KSV--------RFVLGTAGFLLS----AVSFSL 83 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------lhg~--------~~q--------~F~~g~~~iLva----arg~~~ 83 (317)
....++|...+..+.|...|. +||+ |++ +|++|+.+|||| ++|+|+
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 480 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCC
T ss_pred CcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcc
Confidence 345677777665666555432 8999 997 999999999999 999999
Q ss_pred cCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 84 PFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 84 ~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|++|... ..++++.+|
T Consensus 481 ------p~v~~VI~~d~p~s~------~~~~Qr~GR 504 (699)
T 4gl2_A 481 ------KECNIVIRYGLVTNE------IAMVQARGR 504 (699)
T ss_dssp ------CSCCCCEEESCCCCH------HHHHHHHTT
T ss_pred ------ccCCEEEEeCCCCCH------HHHHHHcCC
Confidence 899999999998654 567776665
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.0073 Score=61.59 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=36.6
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|.+.|+ +||+|++ +|++ |..+|||| ++|+|+
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDl- 710 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI- 710 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC--------
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCc-
Confidence 345677777666666665551 6888987 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... ..++++.+|
T Consensus 711 -----p~v~~VI~yd~p~s~------~~~iQr~GR 734 (797)
T 4a2q_A 711 -----VQCNLVVLYEYSGNV------TKMIQVRGR 734 (797)
T ss_dssp -----CCCSEEEEESCCSCH------HHHHTC---
T ss_pred -----hhCCEEEEeCCCCCH------HHHHHhcCC
Confidence 899999999998654 577777766
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.0091 Score=57.39 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=38.0
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|...|. +||+|++ +|++ |..+|||| ++|+|+
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDl- 468 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDI- 468 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEET-
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcc-
Confidence 456677877666666655542 5678887 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCcc
Q psy10677 85 FRDDKTSVVTVPSYPDPSVN 104 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~ 104 (317)
.++..|++|+.|...
T Consensus 469 -----p~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 469 -----AECNLVILYEYVGNV 483 (555)
T ss_dssp -----TSCSEEEEESCCSSC
T ss_pred -----ccCCEEEEeCCCCCH
Confidence 899999999988543
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.022 Score=54.01 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=46.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++|+.+|||| ++|+|+ .+...+++|+.|... ...+++.++.++..
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldl------p~~~~Vi~~~~~~s~------~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDV------PDANVGVIMSGSGSA------REYIQRLGRILRPS 439 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCS------CCBSEEEEECCSSCC------HHHHHHHHHSBCCC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCccc------ccCcEEEEECCCCCH------HHHHHHHhhccCCC
Confidence 9999986 899999999999 999999 788889988877543 68888888888776
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.013 Score=61.00 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=36.8
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|.+.|. +||+|++ +|++ |..+|||| ++|+|+
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl- 710 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI- 710 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C-
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc-
Confidence 445667776555555555442 5888997 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... ..++++.+|
T Consensus 711 -----p~v~~VI~yD~p~s~------~~~iQr~GR 734 (936)
T 4a2w_A 711 -----VQCNLVVLYEYSGNV------TKMIQVRGR 734 (936)
T ss_dssp -----CCCSEEEEESCCSCS------HHHHCC---
T ss_pred -----hhCCEEEEeCCCCCH------HHHHHhcCC
Confidence 899999999988654 677777776
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.01 Score=59.30 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=35.9
Q ss_pred EEEEEEccCCCchhhhhhhcc------------C--------CCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN------------G--------HYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~------------l--------hg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
.+..++|+..+..+.|...|+ + ||+|++ +|++ |..+|||| ++|+|+
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDi- 477 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI- 477 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC----
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcC-
Confidence 356778887766666665553 4 669987 9998 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... +.++++.+|
T Consensus 478 -----p~v~~VI~~d~p~s~------~~~~Qr~GR 501 (696)
T 2ykg_A 478 -----AQCNLVILYEYVGNV------IKMIQTRGR 501 (696)
T ss_dssp -----CCCSEEEEESCC--C------CCC------
T ss_pred -----ccCCEEEEeCCCCCH------HHHHHhhcc
Confidence 889999999988643 344566555
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.03 Score=49.53 Aligned_cols=55 Identities=18% Similarity=0.016 Sum_probs=34.7
Q ss_pred CCCCccc--------eeecC-ccc-ceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLG-TAG-FLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~-iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++| ..+ +|++ ++|+|+ .....+++|+.|-.. ..++++..+.++++
T Consensus 143 l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl------~~a~~VI~~d~~wnp------~~~~Q~~gR~~R~G 210 (271)
T 1z5z_A 143 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL------TSANRVIHFDRWWNP------AVEDQATDRVYRIG 210 (271)
T ss_dssp ECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC------TTCSEEEECSCCSCT------TTC-----------
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc------ccCCEEEEECCCCCh------hHHHHHHHhccccC
Confidence 8999987 99999 777 5666 999999 788999999987543 24556666666554
Q ss_pred e
Q psy10677 125 L 125 (317)
Q Consensus 125 ~ 125 (317)
-
T Consensus 211 q 211 (271)
T 1z5z_A 211 Q 211 (271)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.31 Score=39.46 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=40.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+++.+.. .++.+..++|+.+..++...+.. ++|||.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 46899999999999888877765 37789999999998776654432 688883
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.04 Score=56.03 Aligned_cols=58 Identities=12% Similarity=-0.040 Sum_probs=43.2
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..+++++.|... .....++.++.++..-.
T Consensus 619 lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi------P~v~~VIi~d~~r~~-----l~~l~Qr~GRaGR~g~~ 687 (780)
T 1gm5_A 619 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV------PRANVMVIENPERFG-----LAQLHQLRGRVGRGGQE 687 (780)
T ss_dssp CCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC------TTCCEEEBCSCSSSC-----TTHHHHHHHTSCCSSTT
T ss_pred EeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC------CCCCEEEEeCCCCCC-----HHHHHHHhcccCcCCCC
Confidence 9999997 999999999999 999999 888889888876422 02333466655554433
Q ss_pred c
Q psy10677 127 G 127 (317)
Q Consensus 127 g 127 (317)
|
T Consensus 688 g 688 (780)
T 1gm5_A 688 A 688 (780)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.21 Score=49.03 Aligned_cols=71 Identities=7% Similarity=-0.063 Sum_probs=56.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|.|...+-.+. ..+-++ +..+-|+|||.+...-++..+... .+..+++++||++.|..+.+.++.+.
T Consensus 165 ~p~Q~~i~~~l~--~~r~~~----i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 165 RDYQRDMLKIMS--SKRMTV----CNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CHHHHHHHHHHH--HCSEEE----EEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhc--cccEEE----EEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 999999887665 667788 899999999998776666555542 35689999999999999999888876
Q ss_pred cCC
Q psy10677 248 RTM 250 (317)
Q Consensus 248 ~~~ 250 (317)
+..
T Consensus 233 ~~~ 235 (592)
T 3cpe_A 233 ELL 235 (592)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.022 Score=53.23 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=51.7
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCC--------Cccc--------eeecCcccceec----ccccCCcCCCCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHY--------PKSV--------RFVLGTAGFLLS----AVSFSLPFRDDK 89 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg--------~~~q--------~F~~g~~~iLva----arg~~~~lr~~~ 89 (317)
....++|+..+-.+.|.+.|. +|| +|++ +|++|..+|||| ++|+|+
T Consensus 362 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl------ 435 (494)
T 1wp9_A 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDV------ 435 (494)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGS------
T ss_pred CeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCc------
Confidence 345667777666666666554 899 8876 999999999999 999999
Q ss_pred CcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 90 TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 90 ~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
.+...|+.|+.|... ..++++.+|.++.
T Consensus 436 ~~~~~Vi~~d~~~~~------~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 436 PEVDLVVFYEPVPSA------IRSIQRRGRTGRH 463 (494)
T ss_dssp TTCCEEEESSCCHHH------HHHHHHHTTSCSC
T ss_pred hhCCEEEEeCCCCCH------HHHHHHHhhccCC
Confidence 788889989877533 3455555554444
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.45 Score=39.32 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=41.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEEC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSAT 277 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~T 277 (317)
++++||.|+|++-|..+.+.++.. ++++..++|+.+..++...+.. ++|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 457999999999999998888765 6788999999998776654433 79998
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.052 Score=51.97 Aligned_cols=57 Identities=5% Similarity=-0.113 Sum_probs=47.2
Q ss_pred CCCCccc--------eeecCcccceec-----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCcee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS-----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITL 125 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva-----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~ 125 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..++.++.|... ...++..+|.++..-
T Consensus 377 ~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi------p~v~~vi~~~~~~s~------~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 377 VSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV------KNLHHVVLAHGVKSK------IIVLQTIGRVLRKHG 444 (510)
T ss_dssp ESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC------CSEEEEEESSCCCSC------CHHHHHHHHHHTTTC
T ss_pred EECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc------ccCcEEEEeCCCCCH------HHHHHHHhcccccCC
Confidence 9999996 899999999999 799999 788889888877533 477888888877764
Q ss_pred ec
Q psy10677 126 IG 127 (317)
Q Consensus 126 ~g 127 (317)
.|
T Consensus 445 ~~ 446 (510)
T 2oca_A 445 SK 446 (510)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.93 E-value=0.4 Score=38.80 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=41.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+++.+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 458999999999999988887764 6788999999988776654433 788884
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.31 Score=39.00 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+.+.+... ++.+..++|+.+..++...+.. ++|+|.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 458999999999999988887764 6789999999987766654432 788883
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.2 Score=49.96 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=48.5
Q ss_pred Cchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+..|..++..+.. ..|. ... +.+-||||||++..- ++.... . ..|||+|+.++|.|.++.++
T Consensus 14 ~~~Q~~~i~~l~~~~~~~~~~~~----l~g~~gs~k~~~~a~-~~~~~~---------~-~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 14 QGDQPKAIEKLVKGIQEGKKHQT----LLGATGTGKTFTVSN-LIKEVN---------K-PTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEE----EEECTTSCHHHHHHH-HHHHHC---------C-CEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcEE----EECcCCcHHHHHHHH-HHHHhC---------C-CEEEEECCHHHHHHHHHHHH
Confidence 9999888876552 1332 355 679999999876532 333321 2 38999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 79 ~~~~~ 83 (661)
T 2d7d_A 79 EFFPN 83 (661)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 99753
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.39 Score=38.42 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=41.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+.+.+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 468999999999998888877663 6788999999997766554432 789983
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.32 Score=45.13 Aligned_cols=70 Identities=7% Similarity=-0.079 Sum_probs=54.8
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|.|...+-.+. ..+-++ +..+-+.|||.+...-++..+... .+..+++++||++-|..+.+.++.+
T Consensus 164 L~p~Qk~il~~l~--~~R~~v----i~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 164 LRDYQRDMLKIMS--SKRMTV----CNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCHHHHHHHHHHH--HSSEEE----EEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhc--cCcEEE----EEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3999998886654 456677 899999999998777666555432 3568999999999999888888877
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
.+
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=91.05 E-value=0.44 Score=39.99 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=42.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-+..+.+.+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 458999999999999888887764 6788999999998777655533 789983
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=91.00 E-value=0.058 Score=53.99 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=51.4
Q ss_pred EEEccCCCchhhhhhhcc--------CCCCccc--------eeec--Ccccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 41 VEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVL--GTAGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 41 ~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~--g~~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
.++|...+..+.+...|. +||+|++ .|++ |+.+|||| ++|+|+ ++..|+++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-------~v~~VI~~ 396 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-------SIRRIIFY 396 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-------CBSEEEES
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-------CccEEEEC
Confidence 455665555666665554 9999997 8999 99999999 999997 56677777
Q ss_pred CCCCcc-------ccCCCC-HHHHHHHHHHCCcee
Q psy10677 99 PDPSVN-------HLQGKT-KEEIDSFRKEHNITL 125 (317)
Q Consensus 99 ~~p~~~-------~i~~~~-~~~i~~~~~~~~i~~ 125 (317)
+.+... .....+ .+.+++.+|.++...
T Consensus 397 ~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 397 SLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp CSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred CccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 664310 011122 566777666666543
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.35 E-value=0.12 Score=50.63 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred EEEEEEccCCCchhhhhhhcc----------------CCCCccc-------eeecCccc---ceec----ccccCCcCCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN----------------GHYPKSV-------RFVLGTAG---FLLS----AVSFSLPFRD 87 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~----------------lhg~~~q-------~F~~g~~~---iLva----arg~~~~lr~ 87 (317)
.+.+++|...+..+.+...|. +||++++ +|++|+.+ |||| ++|+|+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi---- 515 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDA---- 515 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC----
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccc----
Confidence 456778877665555555442 8999875 99998766 7777 899999
Q ss_pred CCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 88 DKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 88 ~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
.++..+++++.+... ..+++..+|.++..
T Consensus 516 --p~v~~Vi~~~~~~s~------~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 516 --PTCKNVVLARVVNSM------SEFKQIVGRGTRLR 544 (590)
T ss_dssp --TTEEEEEEESCCCCH------HHHHHHHTTSCCCB
T ss_pred --hheeEEEEEecCCCh------HHHHHHHhhhcccC
Confidence 889999988887644 56678887777764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.16 Score=44.44 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. ++||||||||...
T Consensus 24 ~g~~v~----i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLIL----VTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEE----EECSTTCSHHHHH
T ss_pred CCCEEE----EECCCCccHHHHH
Confidence 677778 9999999999753
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.55 Score=43.90 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=32.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQ 237 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~ 237 (317)
...+++ +.|+||||||.+. -+++..+... +..++|+=|..|+..
T Consensus 52 ~~~h~~----i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLL----VNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEE----EEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEE----EECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 566788 9999999999874 4555555542 457888888888864
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.15 E-value=0.49 Score=38.80 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
.+.++||.|+|++-|..+.+.++.. ++.+..++|+.+..++...+.. ++|||.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3568999999999999888877663 6789999999876654433322 788883
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=86.96 E-value=0.45 Score=45.00 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=30.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+.|+.|||||.... +.+ .. -..+|++||++++..+.+.+.+
T Consensus 166 I~G~aGsGKTt~I~----~~~-~~--------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 166 VDGVPGCGKTKEIL----SRV-NF--------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEECTTSCHHHHHH----HHC-CT--------TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHH----HHh-cc--------CCeEEEeCCHHHHHHHHHHhhh
Confidence 78999999997652 211 11 1459999999999998887753
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=85.16 E-value=0.27 Score=48.81 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCccc---ceec----ccccCCcCCCCCCccccc
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAG---FLLS----AVSFSLPFRDDKTSVVTV 95 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~---iLva----arg~~~~lr~~~~d~~~v 95 (317)
..++++...+-.+.|...+. +||++++ +|++|... +|++ +.|+|+ .....+
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl------~~a~~V 491 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL------IGANRL 491 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC------TTEEEE
T ss_pred EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc------ccCCEE
Confidence 34455665555555555553 9999987 89998764 6666 899999 788999
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 96 PSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 96 ~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
++|+.+-.. ..+..+..+.++++
T Consensus 492 i~~d~~wnp------~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 492 VMFDPDWNP------ANDEQAMARVWRDG 514 (644)
T ss_dssp EECSCCSSH------HHHHHHHTTSSSTT
T ss_pred EEECCCCCc------cHHHHHHHhhhhcC
Confidence 999988543 56777777766663
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.87 E-value=1.1 Score=39.83 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=40.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-+..+.+.+.. .++.+..++|+.+..++...+.. |+|||.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 46899999999998887776654 37889999999998776655533 799984
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=83.79 E-value=0.24 Score=47.04 Aligned_cols=54 Identities=19% Similarity=0.026 Sum_probs=39.4
Q ss_pred CCCCccc--------eeecC-ccc-ceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLG-TAG-FLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~-iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++| ..+ +|++ ++|+|+ .....+++|+.|-.. ..++++.+|.++++
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl------~~~~~vi~~d~~~~~------~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL------TSANRVIHFDRWWNP------AVEDQATDRVYRIG 439 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCC------TTCSEEEESSCCSCC---------CHHHHTTTTTT
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCch------hhCCEEEEeCCCCCc------chHHHHHHHHHHcC
Confidence 8999986 89998 566 5666 899999 788889999887543 46677777777663
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=82.78 E-value=0.46 Score=37.10 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.+++ +.||+|+|||..
T Consensus 26 ~~~~vl----l~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVF----LTGEAGSPFETV 43 (143)
T ss_dssp CSSCEE----EEEETTCCHHHH
T ss_pred CCCcEE----EECCCCccHHHH
Confidence 678899 999999999964
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.55 E-value=0.55 Score=36.72 Aligned_cols=19 Identities=0% Similarity=-0.253 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ +.||+|+|||...
T Consensus 23 ~~~~vl----l~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVW----LYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEE----EESSTTSSHHHHH
T ss_pred CCCCEE----EECCCCCCHHHHH
Confidence 778899 9999999999754
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.11 E-value=0.26 Score=39.75 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=39.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEEC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSAT 277 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~T 277 (317)
+.++||.|+|++-|..+++.++.. ++.+..++|+.+..++...+.. ++|||
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 468999999999998888777654 6788899999887665554433 68888
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=81.75 E-value=2 Score=40.34 Aligned_cols=80 Identities=14% Similarity=-0.021 Sum_probs=41.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-C-cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHH----H
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-P-TRELAQQIQAVISIFSRTMRIRHACLYGGTSKM----Y 265 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-P-treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~----~ 265 (317)
++|++|+|||....- +...+... +-+++++. . .|.-+ .+++..+....++.+.....+.+.. .
T Consensus 102 lvG~~GsGKTTt~~k-LA~~l~~~-------G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~ 170 (433)
T 3kl4_A 102 LVGVQGSGKTTTAGK-LAYFYKKR-------GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 170 (433)
T ss_dssp ECCCTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSCHHHHHHH
T ss_pred EECCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCCHHHHHHH
Confidence 889999999975422 22233322 33444443 3 34333 3445555565566554443344422 1
Q ss_pred HHHHcc--C---cEEECcHHHH
Q psy10677 266 QVILLR--I---LTSATNTSLG 282 (317)
Q Consensus 266 ~~~~~~--~---ilv~TP~~l~ 282 (317)
...... . ++|=|||++.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCcc
Confidence 222222 1 7999999743
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=80.87 E-value=2 Score=40.58 Aligned_cols=79 Identities=14% Similarity=-0.090 Sum_probs=42.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ--- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~--- 266 (317)
+++++|+|||.... -+..++.+. |-++++++ |-|.-| .++++.+....++.+.....+.+....
T Consensus 105 ivG~~G~GKTTt~~-kLA~~l~~~-------G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 105 MVGIQGSGKTTTVA-KLARYFQKR-------GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EECCTTSSHHHHHH-HHHHHHHTT-------TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred EECcCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 89999999997542 223333332 33444444 334433 445666666667766554444442211
Q ss_pred -HHH-----ccCcEEECcHHH
Q psy10677 267 -VIL-----LRILTSATNTSL 281 (317)
Q Consensus 267 -~~~-----~~~ilv~TP~~l 281 (317)
... ..-+||=|||++
T Consensus 174 al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 111 112788899975
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.74 E-value=1.3 Score=37.34 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=29.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|.-++ +.|++|+|||... +-++..+... +-.++++. +.+-..++.+.+..
T Consensus 22 ~G~~~~----i~G~~GsGKTtl~-~~~~~~~~~~-------~~~v~~~~-~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVL----LSGGPGTGKTIFS-QQFLWNGLKM-------GEPGIYVA-LEEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEE----EEECTTSSHHHHH-HHHHHHHHHT-------TCCEEEEE-SSSCHHHHHHHHHT
T ss_pred CCcEEE----EECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEE-ccCCHHHHHHHHHH
Confidence 667778 9999999999653 3333333321 23456654 33334555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 317 | ||||
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-06 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-06 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 5e-06 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 6e-06 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 1e-05 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 1e-05 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 2e-05 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 3e-05 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 5e-05 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-04 |
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 46.8 bits (110), Expect = 1e-06
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
M+SAT+P+EIQKLA +FL + I + VG
Sbjct: 212 MFSATFPKEIQKLAADFLYNYIFMTVG 238
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (105), Expect = 3e-06
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
++SAT+P +++ + L P ++N+
Sbjct: 179 LFSATFPLTVKEFMVKHLHKPYEINLM 205
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 5e-06
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
+ SAT P EI ++ +F++DPI++ V
Sbjct: 195 LISATLPHEILEMTNKFMTDPIRILVK 221
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 6e-06
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
M+SAT +EI+ + ++F+ DP+++ V
Sbjct: 182 MFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
++SAT P +++ K+++ +P ++V
Sbjct: 183 VFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
+ SAT P ++ ++ K+F+ DPI++ V
Sbjct: 191 LLSATMPSDVLEVTKKFMRDPIRILVK 217
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
++SAT PREI LAK+++ D +
Sbjct: 181 LFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLN 25
++SAT+P +QK L P ++N
Sbjct: 182 LYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
+ SAT P ++ ++ +F+ +P+++ V
Sbjct: 187 LLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
Y+ + +K G L+LAPTR +A +++ + + +
Sbjct: 26 YLPAIVREAIK-------RGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGRE 78
Query: 264 MYQVILLRIL 273
+ ++
Sbjct: 79 IVDLMCHATF 88
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.97 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.89 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.82 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.8 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.7 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.5 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.49 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.47 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.18 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.06 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.98 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.94 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.9 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.89 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.84 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.8 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.77 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.69 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.39 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.35 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 98.31 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.27 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.12 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 97.99 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.41 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.4 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.38 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.16 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.05 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.89 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.59 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.43 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.95 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 95.86 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 95.85 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.6 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 95.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.57 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.43 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.18 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 92.91 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 92.9 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.36 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 92.1 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 91.85 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 91.72 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.48 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 91.3 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 91.27 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 90.09 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 90.05 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.16 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.12 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 89.02 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 88.83 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 87.03 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.75 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 84.95 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 83.77 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 83.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 82.38 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.1 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 81.93 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 81.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 80.84 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.75 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-40 Score=287.16 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=150.9
Q ss_pred CCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHH
Q psy10677 129 NIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPA 208 (317)
Q Consensus 129 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~ 208 (317)
.......+|++++|++.++++|+++||..| ||||++|||.++ +|+|++ ++||||||||+||++|+
T Consensus 11 ~~~~~~~sF~~l~L~~~l~~~L~~~g~~~p---------t~IQ~~aIp~il--~g~dvi----~~a~TGSGKTlayllPi 75 (222)
T d2j0sa1 11 EEVDVTPTFDTMGLREDLLRGIYAYGFEKP---------SAIQQRAIKQII--KGRDVI----AQSQSGTGKTATFSISV 75 (222)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHHH
T ss_pred CCCCCCCCHHHCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--CCCCeE----EEcCcchhhhhhhcccc
Confidence 334556799999999999999999999999 999999999999 999999 99999999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 209 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 209 l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
++++... ..+|+++|++||||||.|++++++++++..++++.+++||.+..++...++. |+|||||||.+++
T Consensus 76 l~~l~~~-----~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~ 150 (222)
T d2j0sa1 76 LQCLDIQ-----VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 150 (222)
T ss_dssp HHTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred ccccccc-----ccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcc
Confidence 9998754 3579999999999999999999999999999999999999999888776654 8999999999999
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+ .++++++||||+|+| .||.++....+
T Consensus 151 ~~~~~~~~~l~~lVlDEaD~ll~-~~f~~~i~~I~ 184 (222)
T d2j0sa1 151 RRRSLRTRAIKMLVLDEADEMLN-KGFKEQIYDVY 184 (222)
T ss_dssp HTTSSCCTTCCEEEEETHHHHTS-TTTHHHHHHHH
T ss_pred cccccccccceeeeecchhHhhh-cCcHHHHHHHH
Confidence 886 466888999999999 99998876654
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=3.9e-38 Score=277.30 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=154.3
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
..+.|.++.+|++++|++.++++|+++||..| ||+|++|||.++ +|+|++ ++||||||||+||++
T Consensus 13 ~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~p---------t~iQ~~~ip~il--~g~dvv----i~a~TGsGKTlayll 77 (238)
T d1wrba1 13 DYSATNVIENFDELKLDPTIRNNILLASYQRP---------TPIQKNAIPAIL--EHRDIM----ACAQTGSGKTAAFLI 77 (238)
T ss_dssp SSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHH
T ss_pred CCCCCCccCCHHHCCCCHHHHHHHHHCCCCCC---------CHHHHHHhhhhh--CCCCEE----EECCCCCCcceeeHH
Confidence 34567789999999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCC----CCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcH
Q psy10677 207 PALYHILKMPK----LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNT 279 (317)
Q Consensus 207 p~l~~l~~~~~----~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~ 279 (317)
|+++++..... .....+|+||||+||+|||.|+++.+..++...++++..++|+.....+...... |+|||||
T Consensus 78 p~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~ 157 (238)
T d1wrba1 78 PIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 157 (238)
T ss_dssp HHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHH
T ss_pred HHHHHHHhcccccccccCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHH
Confidence 99999976532 2235689999999999999999999999999999999999999998877666544 8999999
Q ss_pred HHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 280 SLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 280 ~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+|.++++.+ .+.+.++||||+|++ .||.++....+
T Consensus 158 ~l~~~~~~~~~~l~~v~~lViDEaD~ll~-~~f~~~i~~Il 197 (238)
T d1wrba1 158 RLVDFIEKNKISLEFCKYIVLDEADRMLD-MGFEPQIRKII 197 (238)
T ss_dssp HHHHHHHTTSBCCTTCCEEEEETHHHHHH-TTCHHHHHHHH
T ss_pred HHHhHHccCceeccccceeeeehhhhhhh-hccHHHHHHHH
Confidence 999999986 456778899999999 99999987664
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-38 Score=276.19 Aligned_cols=167 Identities=22% Similarity=0.192 Sum_probs=148.8
Q ss_pred CCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 128 QNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 128 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
.++|.++.+|++++|++.++++|+++||.+| |++|++|||.++ .|+|++ ++||||||||+||++|
T Consensus 5 ~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~p---------t~iQ~~aip~il--~g~dvl----~~a~TGsGKTlayllp 69 (218)
T d2g9na1 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKP---------SAIQQRAILPCI--KGYDVI----AQAQSGTGKTATFAIS 69 (218)
T ss_dssp CCCCCCCCCGGGSCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCTTSSHHHHHHHH
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcccchhhhhhhhhh
Confidence 4678999999999999999999999999999 999999999999 999999 9999999999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHH
Q psy10677 208 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGI 283 (317)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~ 283 (317)
+++++... ..+|++||++||+|||.|+++.+..+.+..++++..++|+....++..... +|+||||||+.+
T Consensus 70 ~l~~i~~~-----~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~ 144 (218)
T d2g9na1 70 ILQQIELD-----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFD 144 (218)
T ss_dssp HHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHH
T ss_pred hhheeccc-----ccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHH
Confidence 99998653 468999999999999999999999999999999999998877766554443 289999999999
Q ss_pred HHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 284 YLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 284 ~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++.++ .+++.++||||+|++ .||.++....+
T Consensus 145 ~l~~~~~~~~~l~~lVlDEaD~ll~-~~f~~~~~~Il 180 (218)
T d2g9na1 145 MLNRRYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIF 180 (218)
T ss_dssp HHHTTSSCSTTCCEEEEESHHHHHH-TTCHHHHHHHH
T ss_pred HHhcCCcccccceEEEeeecchhhc-CchHHHHHHHH
Confidence 99886 567788999999999 99988776543
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-37 Score=268.50 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=145.5
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++|++++|+++++++|+++||..| ||+|++|||.++ +|+|++ ++||||||||+||++|+++++..
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~p---------t~iQ~~aip~il--~g~dvl----~~a~TGsGKTlayllP~l~~~~~ 67 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKP---------SPIQEESIPIAL--SGRDIL----ARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCSSSTTHHHHHHHHHHHCCT
T ss_pred CChhccCcCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCEE----eeccCccccccccccchhhcccc
Confidence 689999999999999999999999 999999999999 999999 99999999999999999999865
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
. ..+++++|++||||||.|+++.+..+.+.. ++.+...+||.+...+...++. |+|||||||.+++..+
T Consensus 68 ~-----~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~ 142 (206)
T d1veca_ 68 K-----KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVA 142 (206)
T ss_dssp T-----SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCS
T ss_pred c-----ccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhc
Confidence 4 468999999999999999999999998755 5788888999999888887765 8999999999999986
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
.++++++||||+|+| .||.++....+
T Consensus 143 ~~~~l~~lVlDEaD~ll~-~~f~~~i~~I~ 171 (206)
T d1veca_ 143 KVDHVQMIVLDEADKLLS-QDFVQIMEDII 171 (206)
T ss_dssp CCTTCCEEEEETHHHHTS-TTTHHHHHHHH
T ss_pred cccccceEEEeccccccc-cchHHHHHHHH
Confidence 466788999999999 99998876543
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.7e-38 Score=270.78 Aligned_cols=168 Identities=23% Similarity=0.202 Sum_probs=146.8
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
|.|.|.++.+|++++|+++++++|+++||.+| ||+|++|||.++ +|+|++ ++||||||||+||++
T Consensus 2 ~~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~p---------t~iQ~~aip~il--~g~dvl----~~a~TGsGKT~a~~l 66 (212)
T d1qdea_ 2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEP---------SAIQQRAIMPII--EGHDVL----AQAQSGTGKTGTFSI 66 (212)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHH
T ss_pred CCCCcccccChhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCEE----eecccccchhhhhHh
Confidence 67889999999999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIY 284 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~ 284 (317)
|+++++... ..+|+++|++||+|||.|++..+..+.....++...++|+.+..++...++. |+|||||++.++
T Consensus 67 p~i~~l~~~-----~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~ 141 (212)
T d1qdea_ 67 AALQRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDN 141 (212)
T ss_dssp HHHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHH
T ss_pred hhHhhhhcc-----CCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccc
Confidence 999998653 4689999999999999999999999999999999999999998888887765 899999999999
Q ss_pred HhcCC-----CCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 285 LQQND-----AHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 285 l~~~~-----~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+..+. +++.++||||+|+| .||.++..+.+
T Consensus 142 ~~~~~~~l~~l~~lVlDEad~lld-~~f~~~v~~I~ 176 (212)
T d1qdea_ 142 IQRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQIF 176 (212)
T ss_dssp HHTTSSCCTTCCEEEEETHHHHHH-TTCHHHHHHHH
T ss_pred cccCceecCcceEEeehhhhhhcc-cchHHHHHHHH
Confidence 99875 66778899999999 99999877654
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-37 Score=267.42 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=142.8
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++|+|++|+++++++|+++||+.| ||+|++|||.++ +|+|++ ++||||||||+||++|+++++..
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~p---------t~iQ~~aip~il--~g~dvl----~~A~TGsGKTla~~lp~l~~~~~ 65 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVFVLATLQQLEP 65 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHCCC
T ss_pred CCccccCcCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCeE----EEeccccccccccccceeeeecc
Confidence 479999999999999999999999 999999999999 999999 99999999999999999998765
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcC-
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQN- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~- 288 (317)
. ..+|+++|++||||||.|+++.++.++... .+++++++||.+...+...+. +|+|||||||.++++.+
T Consensus 66 ~-----~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~ 140 (207)
T d1t6na_ 66 V-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 140 (207)
T ss_dssp C-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred c-----CCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCc
Confidence 3 457999999999999999999999999876 478889999999888777653 38999999999999886
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.+.++||||+|++..||.++....
T Consensus 141 ~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I 170 (207)
T d1t6na_ 141 LNLKHIKHFILDECDKMLEQLDMRRDVQEI 170 (207)
T ss_dssp SCCTTCCEEEEESHHHHHSSHHHHHHHHHH
T ss_pred eeccccceeehhhhhhhhhcCCcHHHHHHH
Confidence 45567899999999966888776543
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6e-35 Score=251.79 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=145.1
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.||+|++|++.++++|+++||..| ||+|+++||.++ .|+ |++ ++||||||||+||++|++++.
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~p---------t~iQ~~~ip~~l--~g~~d~i----v~a~TGsGKT~~~~l~~~~~~ 67 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKP---------TDIQMKVIPLFL--NDEYNIV----AQARTGSGKTASFAIPLIELV 67 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--HTCSEEE----EECCSSSSHHHHHHHHHHHHS
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCCee----eechhcccccceeeccccccc
Confidence 5799999999999999999999999 999999999999 875 999 999999999999999999876
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcCC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQND- 289 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~~- 289 (317)
.. ..+|++||++||++||.|+++.++.+....+.++..++|+.+..++...++. |+|||||+|.++++++.
T Consensus 68 ~~------~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~ 141 (208)
T d1hv8a1 68 NE------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTL 141 (208)
T ss_dssp CS------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCS
T ss_pred cc------ccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCC
Confidence 54 4689999999999999999999999999999999999999999888776655 99999999999998864
Q ss_pred ----CCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 290 ----AHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 290 ----~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+++.++||||+|++ .+|.++..+.+
T Consensus 142 ~~~~l~~lViDEad~l~~-~~~~~~i~~I~ 170 (208)
T d1hv8a1 142 NLKNVKYFILDEADEMLN-MGFIKDVEKIL 170 (208)
T ss_dssp CTTSCCEEEEETHHHHHT-TTTHHHHHHHH
T ss_pred CcccCcEEEEEChHHhhc-CCChHHHHHHH
Confidence 45778899999999 89988776544
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-34 Score=245.47 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=147.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
||++++|++.++++|+++||..| ||+|++|||.++ +|+|++ +.||||||||+||++|+++++...
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~p---------t~iQ~~aip~il--~g~dvi----~~a~tGsGKTlay~lp~i~~~~~~ 66 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKP---------SPIQEEAIPVAI--TGRDIL----ARAKNGTGKTAAFVIPTLEKVKPK 66 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCTTSCHHHHHHHHHHHHCCTT
T ss_pred ChHHcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCEE----EecCCcchhhhhhccccccccccc
Confidence 89999999999999999999999 999999999999 999999 999999999999999999987654
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCC---
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQND--- 289 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~--- 289 (317)
..++++++++|+++++.|.+..+..+....++++..++|+.+...+...+.. |+|||||+|.++++.+.
T Consensus 67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l 141 (206)
T d1s2ma1 67 -----LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADL 141 (206)
T ss_dssp -----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCC
T ss_pred -----cccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeec
Confidence 4578999999999999999999999999999999999999999988888765 89999999999999874
Q ss_pred --CCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 290 --AHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 290 --~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+++.++||||+|++ .||.++....+
T Consensus 142 ~~l~~lV~DEaD~l~~-~~f~~~v~~I~ 168 (206)
T d1s2ma1 142 SDCSLFIMDEADKMLS-RDFKTIIEQIL 168 (206)
T ss_dssp TTCCEEEEESHHHHSS-HHHHHHHHHHH
T ss_pred ccceEEEeechhhhhh-hhhHHHHHHHH
Confidence 55678999999999 89988876654
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=4.2e-31 Score=227.29 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=140.7
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++|++++|++.++++|++.||.+| ||+|++|||.++ +|+|++ ++||||||||+||++|+++++..
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~p---------t~iQ~~aip~~l--~G~dvi----i~a~TGSGKTlayllp~l~~~~~ 65 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKP---------TEIQERIIPGAL--RGESMV----GQSQTGTGKTHAYLLPIMEKIKP 65 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCSSHHHHHHHHHHHHHHCCT
T ss_pred CccccCCcCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--CCCCeE----eecccccccceeeeeeecccccc
Confidence 479999999999999999999999 999999999999 999999 99999999999999999998865
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC----CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM----RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ 287 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~----~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~ 287 (317)
. ...+..++++|+++++.+.+..+....+.. ...+.++.|+.+...+....+. |+||||+++.+++.+
T Consensus 66 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~ 140 (209)
T d1q0ua_ 66 E-----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE 140 (209)
T ss_dssp T-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT
T ss_pred c-----cccccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhh
Confidence 4 357899999999999999999998877654 4677777788877766655544 899999999999888
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+ .+++.++||||+|+| .||.++....+
T Consensus 141 ~~~~~~~l~~lViDEad~ll~-~~f~~~v~~I~ 172 (209)
T d1q0ua_ 141 QALDVHTAHILVVDEADLMLD-MGFITDVDQIA 172 (209)
T ss_dssp TCCCGGGCCEEEECSHHHHHH-TTCHHHHHHHH
T ss_pred hccccccceEEEEeecccccc-cccHHHHHHHH
Confidence 5 577888999999999 89998876654
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=3.1e-24 Score=187.44 Aligned_cols=145 Identities=13% Similarity=0.061 Sum_probs=114.0
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..|.+..+.+.+.. +.+.++.+| +++|.+++|.++ .|+|++ ++||||||||++|++|++....+
T Consensus 22 ~~~~~~~~~~~~~~-~~~~~~~~p---------~~~Q~~~i~~~l--~g~~~~----i~apTGsGKT~~~~~~~~~~~~~ 85 (237)
T d1gkub1 22 CLFPEDFLLKEFVE-FFRKCVGEP---------RAIQKMWAKRIL--RKESFA----ATAPTGVGKTSFGLAMSLFLALK 85 (237)
T ss_dssp SCCTTHHHHHHHHH-HHHTTTCSC---------CHHHHHHHHHHH--TTCCEE----CCCCBTSCSHHHHHHHHHHHHTT
T ss_pred ccCccchhHHHHHH-HHHhccCCC---------CHHHHHHHHHHH--CCCCEE----EEecCCChHHHHHHHHHHHHHHh
Confidence 34555445555544 445678899 999999999999 999999 99999999999999999876643
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEE----EEEECCCCHHHHHHHcc-----CcEEECcHHHHHHH
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH----ACLYGGTSKMYQVILLR-----ILTSATNTSLGIYL 285 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~----~~~~gg~~~~~~~~~~~-----~ilv~TP~~l~~~l 285 (317)
+.++||++||++|+.|+++.++++.+.+++++ ....++.+...+...+. .|+|+||++|.+.+
T Consensus 86 --------~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~ 157 (237)
T d1gkub1 86 --------GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY 157 (237)
T ss_dssp --------SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS
T ss_pred --------cCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh
Confidence 56899999999999999999999998776543 33444555444444332 28999999998764
Q ss_pred hc-CCCCCCCCchhHHHhh
Q psy10677 286 QQ-NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 286 ~~-~~~~~~~lde~d~l~~ 303 (317)
.. +.+++.++||+|.|++
T Consensus 158 ~~~~~~~~vVvDE~d~~l~ 176 (237)
T d1gkub1 158 RELGHFDFIFVDDVDAILK 176 (237)
T ss_dssp TTSCCCSEEEESCHHHHHT
T ss_pred hhcCCCCEEEEEChhhhhh
Confidence 43 5789999999998876
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=9.5e-22 Score=167.38 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=112.5
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
+++.+...|++.||.+| +|+|.+|++.++ +|+|++ ++||||||||.+++++++..+.+
T Consensus 10 ~~~~~~~~l~~~g~~~l---------~~~Q~~ai~~l~--~~~~~i----l~apTGsGKT~~a~l~i~~~~~~------- 67 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEEL---------FPPQAEAVEKVF--SGKNLL----LAMPTAAGKTLLAEMAMVREAIK------- 67 (202)
T ss_dssp HHHHHHHHHHCC---CC---------CCCCHHHHHHHT--TCSCEE----EECSSHHHHHHHHHHHHHHHHHT-------
T ss_pred hhHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCCchhHHHHHHHHHHhhc-------
Confidence 78889999999999999 999999999999 999999 99999999999999999988864
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCc
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLS 296 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~ld 296 (317)
++++|+++||++|+.|+++.++++... ..++....|+.........-..++++||..+..++..+ .+++.++|
T Consensus 68 -~~~vl~l~P~~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~D 145 (202)
T d2p6ra3 68 -GGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (202)
T ss_dssp -TCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred -cCcceeecccHHHHHHHHHHHHHHhhc-cccceeeccCcccccccccccceeeeccHHHHHHHhccchhhhhhhhcccc
Confidence 458999999999999999999988775 35666666665544332222338999999999888775 45677899
Q ss_pred hhHHHhh
Q psy10677 297 VWRRLQD 303 (317)
Q Consensus 297 e~d~l~~ 303 (317)
|++.+.+
T Consensus 146 E~h~~~~ 152 (202)
T d2p6ra3 146 EIHLLDS 152 (202)
T ss_dssp TGGGGGC
T ss_pred HHHHhcc
Confidence 9998876
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.8e-21 Score=164.76 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=112.4
Q ss_pred ccccCCCCChhhhcccCcC-CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 135 KTLDETNIPSYILGPMKPK-TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~-g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
..++.++|++.+.+.|++. ||..+ +|+|.+|++.++ +|+|++ ++||||||||+||.+|++.+
T Consensus 2 ~~~e~~~l~~~~~~~l~~~fg~~~~---------rp~Q~~ai~~~l--~g~~vl----v~apTGsGKT~~~~~~~~~~-- 64 (206)
T d1oywa2 2 AQAEVLNLESGAKQVLQETFGYQQF---------RPGQEEIIDTVL--SGRDCL----VVMPTGGGKSLCYQIPALLL-- 64 (206)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSC---------CTTHHHHHHHHH--TTCCEE----EECSCHHHHHHHHHHHHHHS--
T ss_pred CchhhCCCCHHHHHHHHHhcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCCCCcchhhhhhhhc--
Confidence 3567899999999999987 99999 999999999999 999999 99999999999999998742
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHH----
Q psy10677 214 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLG---- 282 (317)
Q Consensus 214 ~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~---- 282 (317)
...+++++||++|+.|..+.++.+... .....+........... ..++++||.++.
T Consensus 65 ---------~~~~~~v~P~~~L~~q~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~ 131 (206)
T d1oywa2 65 ---------NGLTVVVSPLISLMKDQVDQLQANGVA----AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF 131 (206)
T ss_dssp ---------SSEEEEECSCHHHHHHHHHHHHHTTCC----EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTH
T ss_pred ---------cCceEEeccchhhhhhHHHHHHhhccc----ccccccccccccchhHHHHHhcCCceEEEEechhhhchhh
Confidence 458999999999999999999887553 33333433333222111 127999999884
Q ss_pred -HHHhcCCCCCCCCchhHHHhhhcCC
Q psy10677 283 -IYLQQNDAHSPCLSVWRRLQDILGL 307 (317)
Q Consensus 283 -~~l~~~~~~~~~lde~d~l~~~~gf 307 (317)
.......+.+.++||+|.+.+ .|+
T Consensus 132 ~~~~~~~~v~~lviDEaH~~~~-~~~ 156 (206)
T d1oywa2 132 LEHLAHWNPVLLAVDEAHCISQ-WGH 156 (206)
T ss_dssp HHHHTTSCEEEEEESSGGGGCT-TSS
T ss_pred cccchhheeeeeeeeeeeeeec-ccc
Confidence 345556888999999998877 543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.70 E-value=1.3e-17 Score=140.65 Aligned_cols=122 Identities=16% Similarity=0.056 Sum_probs=103.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|.+++..+. ++|++ +++|||||||+++++++...+.+. +.++||++||++|+.|.++.++++.
T Consensus 11 r~~Q~~~~~~~~---~~n~l----v~~pTGsGKT~i~~~~~~~~~~~~-------~~~il~i~P~~~L~~q~~~~~~~~~ 76 (200)
T d1wp9a1 11 RIYQEVIYAKCK---ETNCL----IVLPTGLGKTLIAMMIAEYRLTKY-------GGKVLMLAPTKPLVLQHAESFRRLF 76 (200)
T ss_dssp CHHHHHHHHHGG---GSCEE----EECCTTSCHHHHHHHHHHHHHHHS-------CSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHh---cCCeE----EEeCCCCcHHHHHHHHHHHHHHhc-------CCcEEEEcCchHHHHHHHHHHHHhh
Confidence 999999998766 45788 999999999999999988877653 4579999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHcc--CcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLR--ILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~--~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
...+.++....++.........+. .++++||+++...+... .+++.++||++.+.+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~ 139 (200)
T d1wp9a1 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (200)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred cccccceeeeecccchhHHHHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhc
Confidence 888889888888888777666554 38999999999887774 566788999998765
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=9.5e-15 Score=128.05 Aligned_cols=121 Identities=16% Similarity=0.037 Sum_probs=103.1
Q ss_pred Cchhhhhccccccc--cCc--CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNF--QAK--KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip~~l~~--~g~--dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
|.-|.+|+..+.++ ++. +.+ ++|.||||||..|+..++..+.. |-++++++||..||.|.++.+
T Consensus 85 T~~Q~~ai~ei~~d~~~~~~m~rL----L~GdvGSGKT~Va~~a~~~~~~~--------g~q~~~m~Pt~~La~Qh~~~~ 152 (264)
T d1gm5a3 85 TNAQKRAHQEIRNDMISEKPMNRL----LQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTSILAIQHYRRT 152 (264)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCCCE----EECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccCcceee----eeccccccccHHHHHHHHHHHhc--------ccceeEEeehHhhhHHHHHHH
Confidence 99999999888631 233 456 67999999999999999988865 569999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
+++...++++++.++|+.+..+....+.. |+|||..-+.+-+..+++.+.++||-++
T Consensus 153 ~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~LglviiDEqH~ 216 (264)
T d1gm5a3 153 VESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHR 216 (264)
T ss_dssp HHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCC
T ss_pred HHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceeeeccccc
Confidence 99999999999999999998776655443 7999998888777778899999998654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.49 E-value=2.3e-15 Score=134.38 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=75.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
+|++++ +.||||||||++|++|++...... +.++||++||||||.|+++.++.+.... .....
T Consensus 8 ~~~~~l----v~~~TGsGKT~~~l~~~~~~~~~~-------~~~~lvi~Ptr~La~q~~~~l~~~~~~~----~~~~~-- 70 (305)
T d2bmfa2 8 KKRLTI----MDLHPGAGKTKRYLPAIVREAIKR-------GLRTLILAPTRVVAAEMEEALRGLPIRY----QTPAI-- 70 (305)
T ss_dssp TTCEEE----ECCCTTSSTTTTHHHHHHHHHHHH-------TCCEEEEESSHHHHHHHHHHTTTSCCBC----CC-----
T ss_pred cCCcEE----EEECCCCCHHHHHHHHHHHHHHhc-------CCEEEEEccHHHHHHHHHHHHhcCCcce----eeeEE--
Confidence 899999 999999999999999999877653 5789999999999999988876553321 11111
Q ss_pred CHHHHHHHccCcEEECcHHHHHHHhcC----CCCCCCCchhHHHhh
Q psy10677 262 SKMYQVILLRILTSATNTSLGIYLQQN----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~TP~~l~~~l~~~----~~~~~~lde~d~l~~ 303 (317)
......-..++++||+.+..++... .+++.++||+|.+.+
T Consensus 71 --~~~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~ 114 (305)
T d2bmfa2 71 --RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDP 114 (305)
T ss_dssp -------CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSH
T ss_pred --eecccCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecch
Confidence 1111122238999999998877653 678899999987754
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.7e-14 Score=122.86 Aligned_cols=121 Identities=17% Similarity=0.004 Sum_probs=103.2
Q ss_pred Cchhhhhccccccc--cCc--CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNF--QAK--KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip~~l~~--~g~--dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
|+-|..++..+.++ +++ +.+ ++|.||||||..|+..+...+.. |-++++|+||..||.|.++.+
T Consensus 57 t~~Q~~~~~~i~~~~~~~~~~~~L----L~GdvGsGKT~V~~~a~~~~~~~--------g~qv~~l~Pt~~La~Q~~~~~ 124 (233)
T d2eyqa3 57 TPDQAQAINAVLSDMCQPLAMDRL----VCGDVGFGKTEVAMRAAFLAVDN--------HKQVAVLVPTTLLAQQHYDNF 124 (233)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCEEE----EECCCCTTTHHHHHHHHHHHHTT--------TCEEEEECSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCccCeE----EEcCCCCCcHHHHHHHHHHHHHc--------CCceEEEccHHHhHHHHHHHH
Confidence 99999999887641 233 557 88999999999999999887753 679999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
+++...+++++.+++|+.+..+....+.. |+|||-..+.+.+...++.+.++||-++
T Consensus 125 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIiDEeH~ 188 (233)
T d2eyqa3 125 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 188 (233)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGG
T ss_pred HHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCccccccceeeechhh
Confidence 99999999999999999998776655433 7999998888777778899999998774
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.18 E-value=1.8e-12 Score=114.99 Aligned_cols=121 Identities=12% Similarity=-0.055 Sum_probs=91.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+.|.+|+..++ ..+..+ +.+|||+|||+....-+ ..+... ..-++||+|||++|+.|.++.+.++.
T Consensus 115 rdyQ~~av~~~l--~~~~~i----l~~pTGsGKT~i~~~i~-~~~~~~------~~~k~Liivp~~~Lv~Q~~~~f~~~~ 181 (282)
T d1rifa_ 115 HWYQKDAVFEGL--VNRRRI----LNLPTSAGRSLIQALLA-RYYLEN------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CHHHHHHHHHHH--HHSEEE----ECCCTTSCHHHHHHHHH-HHHHHH------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHH--hcCCce----eEEEcccCccHHHHHHH-HHhhhc------ccceEEEEEcCchhHHHHHHHHHHhh
Confidence 999999999999 777788 89999999999755433 333322 23489999999999999999999997
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHH
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRL 301 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l 301 (317)
......+..+++|.........-..++|+|+..+..+.+. ..+++.++|||+++
T Consensus 182 ~~~~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~~~~~~~f~~VIvDEaH~~ 237 (282)
T d1rifa_ 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGC
T ss_pred ccccccceeecceecccccccccceEEEEeeehhhhhcccccCCCCEEEEECCCCC
Confidence 7655667777777765443333344899999887654332 35778999999864
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.06 E-value=4.7e-11 Score=100.70 Aligned_cols=109 Identities=20% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+.+.|.+++..++ .+...+ +.+|||+|||+..+..+ .++ +.++||+||+++|+.|..+.++.+
T Consensus 71 Lr~yQ~eav~~~~--~~~~~l----l~~~tG~GKT~~a~~~~-~~~----------~~~~Liv~p~~~L~~q~~~~~~~~ 133 (206)
T d2fz4a1 71 LRDYQEKALERWL--VDKRGC----IVLPTGSGKTHVAMAAI-NEL----------STPTLIVVPTLALAEQWKERLGIF 133 (206)
T ss_dssp CCHHHHHHHHHHT--TTSEEE----EEESSSTTHHHHHHHHH-HHS----------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHH--hCCCcE----EEeCCCCCceehHHhHH-HHh----------cCceeEEEcccchHHHHHHHHHhh
Confidence 3999999999999 778888 89999999998765433 322 346899999999999999998877
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh--cCCCCCCCCchhHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ--QNDAHSPCLSVWRRL 301 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~--~~~~~~~~lde~d~l 301 (317)
... .+....|+. . ....++|+|...+....+ .+...+.++||++.+
T Consensus 134 ~~~---~~~~~~~~~-~-----~~~~i~i~t~~~~~~~~~~~~~~~~lvIiDEaH~~ 181 (206)
T d2fz4a1 134 GEE---YVGEFSGRI-K-----ELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHL 181 (206)
T ss_dssp CGG---GEEEESSSC-B-----CCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCC
T ss_pred ccc---chhhccccc-c-----cccccccceehhhhhhhHhhCCcCCEEEEECCeeC
Confidence 543 233333332 2 234489999988876544 356888999998864
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.8e-11 Score=96.58 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCcCcEEEEEEccCCC-chhhhhhhcc---------------------------------CCCCccc--------eeec
Q psy10677 32 AANPNIKQFVEICHEYE-KPAKWWDSNN---------------------------------GHYPKSV--------RFVL 69 (317)
Q Consensus 32 ~~~~~i~q~~~~~~~~~-K~~~L~~ll~---------------------------------lhg~~~q--------~F~~ 69 (317)
.+.++|+|+|+.|+.++ |++.|.++++ +||++++ .|++
T Consensus 3 ~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~ 82 (168)
T d2j0sa2 3 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 82 (168)
T ss_dssp CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhc
Confidence 36789999999998765 9999999886 9999998 9999
Q ss_pred Ccccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 70 GTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 70 g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
|+.++||| +||+|+ .++..|+||++|... +.++++.++.++..-.|..+
T Consensus 83 g~~~iLv~Td~~~rGiDi------~~v~~VIn~d~P~~~------~~yihR~GR~gR~g~~G~~i 135 (168)
T d2j0sa2 83 GASRVLISTDVWARGLDV------PQVSLIINYDLPNNR------ELYIHRIGRSGRYGRKGVAI 135 (168)
T ss_dssp TSSCEEEECGGGSSSCCC------TTEEEEEESSCCSSH------HHHHHHHTTSSGGGCCEEEE
T ss_pred CCccEEeccchhcccccc------cCcceEEEecCCcCH------HHHHhhhccccccCCCcEEE
Confidence 99999999 999999 899999999999865 78999998888776666543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.94 E-value=2.7e-10 Score=88.60 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=70.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|++++ ++||||||||.+++..++...... +.+++|++|+++|+.|.++.+... +..+....+..
T Consensus 6 ~~~~~i----l~~~tGsGKT~~~~~~~~~~~~~~-------~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~~~ 70 (140)
T d1yksa1 6 KGMTTV----LDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSA 70 (140)
T ss_dssp TTCEEE----ECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCC
T ss_pred cCCcEE----EEcCCCCChhHHHHHHHHHHhhhc-------CceeeeeecchhHHHHHHHHhhhh----hhhhccccccc
Confidence 799999 999999999999887877777653 579999999999999988765432 23322211111
Q ss_pred CHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHHH
Q psy10677 262 SKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRRL 301 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~l 301 (317)
.. ..-..+.+.|.+.+...... .++++.++||++.+
T Consensus 71 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~ 110 (140)
T d1yksa1 71 HG----SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 110 (140)
T ss_dssp CC----CSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred cc----ccccchhhhhHHHHHHHHhccccccceeEEEEcccccc
Confidence 11 01112677787777665444 37888999999854
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=6.8e-11 Score=96.80 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=74.6
Q ss_pred CCcCcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCc
Q psy10677 33 ANPNIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGT 71 (317)
Q Consensus 33 ~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~ 71 (317)
+.++|+|+|+.|++++|..+|.++++ +||+|++ +|++|+
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~ 82 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 82 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCc
Confidence 56789999999999999999999986 9999998 999999
Q ss_pred ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 72 AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 72 ~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
.++||| +||+|+ .+...+++|+.|... ++++++.++.++.+-.|.
T Consensus 83 ~~ilv~Td~~~~Gid~------~~v~~VI~~d~p~~~------~~y~qr~GR~gR~g~~g~ 131 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDI------QAVNVVINFDFPKTA------ETYLHRIGRSGRFGHLGL 131 (171)
T ss_dssp SSEEEESSCSSSSCCC------TTEEEEEESSCCSSH------HHHHHHHCBSSCTTCCEE
T ss_pred cccccchhHhhhcccc------ceeEEEEecCCcchH------HHHHHHhhhcccCCCccE
Confidence 999999 999999 899999999999865 788998887777655554
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.84 E-value=8e-10 Score=86.40 Aligned_cols=92 Identities=13% Similarity=-0.102 Sum_probs=63.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.||||||||+.+..- +.. .+.+++|++||++|++|..+.+.+..... .....+|.... ...
T Consensus 13 l~apTGsGKT~~~~~~----~~~-------~~~~vli~~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~~----~~~ 74 (136)
T d1a1va1 13 LHAPTGSGKSTKVPAA----YAA-------QGYKVLVLNPSVAATLGFGAYMSKAHGVD---PNIRTGVRTIT----TGS 74 (136)
T ss_dssp EECCTTSCTTTHHHHH----HHT-------TTCCEEEEESCHHHHHHHHHHHHHHHSCC---CEEECSSCEEC----CCC
T ss_pred EEeCCCCCHHHHHHHH----HHH-------cCCcEEEEcChHHHHHHHHHHHHHHhhcc---ccccccccccc----ccc
Confidence 8999999999654222 222 35689999999999999999998876542 23333332221 122
Q ss_pred CcEEECcHHHHHHHhc--CCCCCCCCchhHHH
Q psy10677 272 ILTSATNTSLGIYLQQ--NDAHSPCLSVWRRL 301 (317)
Q Consensus 272 ~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l 301 (317)
.++++|.+.+...... ..+++.++||++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~vIiDE~H~~ 106 (136)
T d1a1va1 75 PITYSTYGKFLADGGCSGGAYDIIICDECHST 106 (136)
T ss_dssp SEEEEEHHHHHHTTGGGGCCCSEEEEETTTCC
T ss_pred ceEEEeeeeeccccchhhhcCCEEEEeccccc
Confidence 3788998887655443 57889999999753
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=7.3e-11 Score=95.81 Aligned_cols=82 Identities=24% Similarity=0.196 Sum_probs=66.0
Q ss_pred cEEEEEEccCCC-chhhhhhhcc---------------------------------CCCCccc--------eeecCcccc
Q psy10677 37 IKQFVEICHEYE-KPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTAGF 74 (317)
Q Consensus 37 i~q~~~~~~~~~-K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~~i 74 (317)
|+|+|+.|++++ |.+.|.++++ +||+|++ .|++|+.++
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 689999897654 8999988886 9999998 999999999
Q ss_pred eec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 75 LLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 75 Lva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
||| +||+|+ .++..|++|++|... +.++++.++..+..-.|..+
T Consensus 81 Lv~Tdv~~rGiDi------~~v~~VI~~d~P~~~------~~yihR~GR~gR~g~~g~~i 128 (162)
T d1fuka_ 81 LISTDLLARGIDV------QQVSLVINYDLPANK------ENYIHRIGRGGRFGRKGVAI 128 (162)
T ss_dssp EEEEGGGTTTCCC------CSCSEEEESSCCSSG------GGGGGSSCSCC-----CEEE
T ss_pred eeccccccccccC------CCceEEEEeccchhH------HHHHhhccccccCCCccEEE
Confidence 999 999999 899999999999765 67888877777665555443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.77 E-value=7e-10 Score=89.08 Aligned_cols=82 Identities=17% Similarity=0.103 Sum_probs=71.9
Q ss_pred CcCcEEEEEEccCCCchhhhhhhcc--------------------------------CCCCccc--------eeecCccc
Q psy10677 34 NPNIKQFVEICHEYEKPAKWWDSNN--------------------------------GHYPKSV--------RFVLGTAG 73 (317)
Q Consensus 34 ~~~i~q~~~~~~~~~K~~~L~~ll~--------------------------------lhg~~~q--------~F~~g~~~ 73 (317)
+.+|+|+|+.|++++|++.|.++++ +||++++ +|++|+.+
T Consensus 1 n~nI~~~~i~v~~~~K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 80 (155)
T d1hv8a2 1 NANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80 (155)
T ss_dssp SSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CCCeEEEEEEeChHHHHHHHHHHHccCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce
Confidence 4689999999999999999999996 9999987 99999999
Q ss_pred ceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 74 FLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 74 iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
+||| +||+|+ .++..+++|++|... ..++++.++..+.+-.|
T Consensus 81 ilv~T~~~~~Gid~------~~v~~Vi~~d~p~~~------~~y~qr~GR~gR~g~~g 126 (155)
T d1hv8a2 81 ILIATDVMSRGIDV------NDLNCVINYHLPQNP------ESYMHRIGRTGRAGKKG 126 (155)
T ss_dssp EEEECTTHHHHCCC------SCCSEEEESSCCSCH------HHHHHHSTTTCCSSSCC
T ss_pred eeeehhHHhhhhhh------ccCcEEEEecCCCCH------HHHHHHHHhcCcCCCCc
Confidence 9999 999999 899999999999755 68888887777654444
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.2e-09 Score=86.38 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=71.7
Q ss_pred CcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCcccc
Q psy10677 36 NIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTAGF 74 (317)
Q Consensus 36 ~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~~i 74 (317)
.++|+|+.|++++|.++|.++++ +||+|++ +|++|+.++
T Consensus 1 ~l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CcEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 37899999999999999999886 9999998 899999999
Q ss_pred eec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 75 LLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 75 Lva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
||| ++|+|+ .+...+++|++|... +.++++.++.++.+-.|..
T Consensus 81 Lv~T~~~~~Gid~------~~~~~vi~~~~p~~~------~~yiqr~GR~gR~g~~g~~ 127 (168)
T d1t5ia_ 81 LVATNLFGRGMDI------ERVNIAFNYDMPEDS------DTYLHRVARAGRFGTKGLA 127 (168)
T ss_dssp EEESSCCSTTCCG------GGCSEEEESSCCSSH------HHHHHHHHHHTGGGCCCEE
T ss_pred eeccccccchhhc------ccchhhhhhhcccch------hhHhhhhhhcccCCCccEE
Confidence 999 999999 788999999999865 7899999998886555533
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.39 E-value=6e-07 Score=76.98 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=101.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +.-.||-|||++..+|+.-.... |-.+-|++..--||..=.+++..+-
T Consensus 82 yDVQLiGgi~L~--~G~--i----aem~TGEGKTL~a~l~a~l~al~--------g~~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 82 FKVQLMGGVALH--DGN--I----AEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp CHHHHHHHHHHH--TTS--E----EECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHH--hhh--h----eeecCCCcchhHHHHHHHHHHhc--------CCCceEEecCccccchhhhHHhHHH
Confidence 899988877777 775 6 78999999999999998876654 4568899999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++.++..+.+..+....... |+-||+..+. |+|..+ .+++..+||+|.+|=
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsili 214 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILI 214 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHT
T ss_pred HHcCCCccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhh
Confidence 9999999999999998888777755 9999999985 666653 566888999998763
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=98.31 E-value=6.4e-08 Score=79.35 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=62.7
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
.+.+++|...+..+.+...|+ +||+|+| +|++|+.+|||| +||+|+ .++..|++
T Consensus 32 ~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDi------p~v~~VI~ 105 (181)
T d1t5la2 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDI------PEVSLVAI 105 (181)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCC------TTEEEEEE
T ss_pred CeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCC------CCCCEEEE
Confidence 466778887766777777775 9999998 999999999999 999999 89999999
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
|++|...+... ...++++.++.++.
T Consensus 106 ~d~p~~~~~~s-~~~yi~R~GRagR~ 130 (181)
T d1t5la2 106 LDADKEGFLRS-ERSLIQTIGRAARN 130 (181)
T ss_dssp TTTTSCSGGGS-HHHHHHHHGGGTTS
T ss_pred ecCCccccccc-HHHHHHHHHhhccc
Confidence 99997532221 25667777776653
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=8.4e-08 Score=79.94 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=52.9
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||++++ .|++|+.++||| +||+|+ .++..|++|++|... +.++++.++..+.+-.
T Consensus 60 ~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~~GiD~------p~v~~VI~~~~P~~~------~~y~qr~GR~gR~g~~ 127 (200)
T d1oywa3 60 YHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK------PNVRFVVHFDIPRNI------ESYYQETGRAGRDGLP 127 (200)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC------TTCCEEEESSCCSSH------HHHHHHHTTSCTTSSC
T ss_pred ecCCCcHHHHHHHHHHHhcccceEEEecchhhhccCC------CCCCEEEECCCccch------HHHHHHhhhhhcCCCC
Confidence 9999998 999999999999 999999 899999999999865 7899998888877655
Q ss_pred cCCC
Q psy10677 127 GQNI 130 (317)
Q Consensus 127 g~~~ 130 (317)
|..+
T Consensus 128 g~ai 131 (200)
T d1oywa3 128 AEAM 131 (200)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 6543
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.12 E-value=1.7e-06 Score=75.98 Aligned_cols=129 Identities=11% Similarity=0.143 Sum_probs=80.9
Q ss_pred Cchhhhhcccccc-------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN-------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 168 t~iQ~~~ip~~l~-------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|+|.+++.-+.. ..+..++ +.=..|.|||+..+ .++..+.............+||+||.. |..|-.
T Consensus 57 r~hQ~~gv~~l~~~~~~~~~~~~~g~i----LaDemGlGKT~qai-a~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~ 130 (298)
T d1z3ix2 57 RPHQREGVKFLWDCVTGRRIENSYGCI----MADEMGLGKTLQCI-TLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWY 130 (298)
T ss_dssp CHHHHHHHHHHHHHHTTSSSTTCCEEE----ECCCTTSCHHHHHH-HHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhhccCCceE----EEeCCCCCHHHHHH-HHHHHHHHhcccccCCCCcEEEEccch-hhHHHH
Confidence 7799998864421 1445567 67789999997643 344444443322222345799999985 888999
Q ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHHH---Hcc--------CcEEECcHHHHHH---HhcCCCCCCCCchhHHHhh
Q psy10677 241 AVISIFSRTMRIRHACLYGGTSKMYQVI---LLR--------ILTSATNTSLGIY---LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~~~--------~ilv~TP~~l~~~---l~~~~~~~~~lde~d~l~~ 303 (317)
+++.++... .+.++.++|+........ ... .++|+|...+... +.....++.++||++++-.
T Consensus 131 ~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeeccccccccc
Confidence 999998875 355566666554332221 111 1578887766543 3334566789999998754
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=97.99 E-value=8.1e-07 Score=71.92 Aligned_cols=78 Identities=9% Similarity=0.035 Sum_probs=62.4
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
++.+++|...+..+.|...|. +||+|+| +|++|+++|||| +||+|+ .++..+++
T Consensus 32 ~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDi------p~V~~Vi~ 105 (174)
T d1c4oa2 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDI------PEVSLVAI 105 (174)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCC------TTEEEEEE
T ss_pred CcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccC------CCCcEEEE
Confidence 467888888777777777776 9999998 999999999999 999999 89999999
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
|+.|... ...-.+.++++.++..+
T Consensus 106 ~~~~~~~-~~~~~~~~iq~~GR~gR 129 (174)
T d1c4oa2 106 LDADKEG-FLRSERSLIQTIGRAAR 129 (174)
T ss_dssp TTTTSCS-GGGSHHHHHHHHGGGTT
T ss_pred ecccccc-ccchhHHHHHHhhhhhh
Confidence 9987543 11112467888777765
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.41 E-value=1.3e-05 Score=68.24 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=42.4
Q ss_pred EEEccCCCchhhhhhhcc--CCCCccc--------eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCC
Q psy10677 41 VEICHEYEKPAKWWDSNN--GHYPKSV--------RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDP 101 (317)
Q Consensus 41 ~~~~~~~~K~~~L~~ll~--lhg~~~q--------~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p 101 (317)
.++|...+..+.|...|+ +||++++ +|++|+++|||| +||+|+ .+ +..|++|++|
T Consensus 29 iif~~~~~~~~~l~~~l~~~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlDi------p~~v~~VI~~d~P 102 (248)
T d1gkub2 29 IIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL------PERIRFAVFVGCP 102 (248)
T ss_dssp EEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCC------TTTCCEEEEESCC
T ss_pred EEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchhhhccCc------cccccEEEEeCCC
Confidence 344444444444554444 9999998 999999999998 889999 65 8899999998
Q ss_pred C
Q psy10677 102 S 102 (317)
Q Consensus 102 ~ 102 (317)
.
T Consensus 103 ~ 103 (248)
T d1gkub2 103 S 103 (248)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.40 E-value=1.4e-05 Score=62.12 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=52.3
Q ss_pred EEEccCCCchhhhhhhcc--------CCCCccc-eeecCcccceec----ccccCCcCCCCCCcccccCCC----CCCCc
Q psy10677 41 VEICHEYEKPAKWWDSNN--------GHYPKSV-RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSY----PDPSV 103 (317)
Q Consensus 41 ~~~~~~~~K~~~L~~ll~--------lhg~~~q-~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf----~~p~~ 103 (317)
.++|......+.|...|+ +||+|++ +|++|+.++||| +||+|. ++..|+++ ++|..
T Consensus 39 IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~~~~~~~~vlvaTd~~~~GiD~-------~v~~Vi~~~~~~~~P~~ 111 (138)
T d1jr6a_ 39 LIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTG-------DFDSVIDCNTSDGKPQD 111 (138)
T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCCCTTSSCEEEEESSSSCSSSCC-------CBSEEEECSEETTEECC
T ss_pred EEEeCcHHHHHHHHHHHhccccchhhhhccchhhhhhhhhcceeehhHHHHhcccc-------ccceEEEEEecCCCCCC
Confidence 455665555555555554 9999999 999999999999 999984 55555554 45654
Q ss_pred cccCCCCHHHHHHHHHHCCceeec
Q psy10677 104 NHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 104 ~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
. ++++++.++..+ ...|
T Consensus 112 ~------~~y~qr~GR~gR-g~~G 128 (138)
T d1jr6a_ 112 A------VSRTQRRGRTGR-GKPG 128 (138)
T ss_dssp H------HHHHHHHTTBCS-SSCE
T ss_pred H------HHHHhHhccccC-CCCc
Confidence 3 678888887776 4444
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.38 E-value=9.1e-05 Score=64.01 Aligned_cols=71 Identities=7% Similarity=-0.089 Sum_probs=51.5
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+|+|-|.+|+-. ....++ +.|+.|||||.+.+--+...+.... ...-+.||+++|+.+|..+.+.+.+
T Consensus 1 ~L~~eQ~~av~~----~~~~~l----I~g~aGTGKTt~l~~rv~~ll~~~~----~~~~~ILvlt~tn~a~~~i~~~~~~ 68 (306)
T d1uaaa1 1 RLNPGQQQAVEF----VTGPCL----VLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQ 68 (306)
T ss_dssp CCCHHHHHHHHC----CSSEEE----ECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhC----CCCCEE----EEeeCCccHHHHHHHHHHHHHHhcC----CChhHEEEEeCcHHHHHHHHHHHHH
Confidence 469999999953 234577 8999999999876544443333211 1234799999999999999988887
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 69 ~~~ 71 (306)
T d1uaaa1 69 TLG 71 (306)
T ss_dssp HSC
T ss_pred hcC
Confidence 754
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.16 E-value=0.00024 Score=59.18 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=77.8
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.|.+++.-+.. ..+..++ +.-++|.|||+..+ .++.++... .....+||+|| ..+..|-.+++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~i----LaDe~GlGKT~~~i-~~~~~~~~~-----~~~~~~LIv~p-~~l~~~W~~e~ 80 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGIC----LADDMGLGKTLQTI-AVFSDAKKE-----NELTPSLVICP-LSVLKNWEEEL 80 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEE----ECCCTTSCHHHHHH-HHHHHHHHT-----TCCSSEEEEEC-STTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEE----EEeCCCCChHHHHH-Hhhhhhhhc-----ccccccceecc-hhhhhHHHHHH
Confidence 468999999865431 1455677 77899999999864 445555443 22357899999 56678888888
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHH--HHhcCCCCCCCCchhHHHhh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGI--YLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~--~l~~~~~~~~~lde~d~l~~ 303 (317)
.++.... ++... ++....... .-..++|+|...+.. .+......+.++||+..+-.
T Consensus 81 ~~~~~~~--~~~~~-~~~~~~~~~-~~~~vvi~~~~~~~~~~~l~~~~~~~vI~DEah~~k~ 138 (230)
T d1z63a1 81 SKFAPHL--RFAVF-HEDRSKIKL-EDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKN 138 (230)
T ss_dssp HHHCTTS--CEEEC-SSSTTSCCG-GGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSC
T ss_pred Hhhcccc--cceee-ccccchhhc-cCcCEEEeeHHHHHhHHHHhcccceEEEEEhhhcccc
Confidence 8887643 33332 222111111 112378888877643 34445667789999987754
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.0001 Score=60.87 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=42.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHH
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFR 118 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~ 118 (317)
+||+|++ +|++|+++|||| ++|+|+ .++..+++++.|.-. .+++|..|
T Consensus 70 lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDi------p~a~~iii~~a~~fg------lsqlhQlr 129 (206)
T d1gm5a4 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV------PRANVMVIENPERFG------LAQLHQLR 129 (206)
T ss_dssp CCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC------TTCCEEEBCSCSSSC------TTHHHHHH
T ss_pred EeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccc------cCCcEEEEEccCCcc------HHHHHhhh
Confidence 9999998 999999999999 999999 899988888877643 57888865
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.89 E-value=0.00095 Score=57.84 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=51.7
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
|++=|.+++-. .+..++ +.|+.|||||.+.+--+...+.... ...-+.+++++|+..|..+...+...
T Consensus 12 L~~eQ~~~v~~----~~g~~l----V~g~aGSGKTt~l~~ri~~ll~~~~----~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 12 LNKEQQEAVRT----TEGPLL----IMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp SCHHHHHHHHC----CSSCEE----EEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEecCCccHHHHHHHHHHHHHHcCC----CCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 58889998863 334588 9999999999887655554443321 12237999999999999999988776
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 80 ~~ 81 (318)
T d1pjra1 80 LG 81 (318)
T ss_dssp HG
T ss_pred cc
Confidence 54
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00091 Score=54.91 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=50.0
Q ss_pred EEEEEEccCCCchhhh----hhhcc------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCccccc
Q psy10677 38 KQFVEICHEYEKPAKW----WDSNN------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTV 95 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L----~~ll~------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v 95 (317)
.|.|++|+.-+-.+.. ..++. +||.|++ +|++|+++|||| ..|+|+ .+...+
T Consensus 32 gQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDv------pnA~~i 105 (211)
T d2eyqa5 32 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI------PTANTI 105 (211)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC------TTEEEE
T ss_pred CeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCC------CCCcEE
Confidence 5777778754433333 33332 9999998 999999999999 899999 788776
Q ss_pred CCCCCCCccccCCCCHHHHHHHH
Q psy10677 96 PSYPDPSVNHLQGKTKEEIDSFR 118 (317)
Q Consensus 96 ~nf~~p~~~~i~~~~~~~i~~~~ 118 (317)
+.++.+. ..-+++|.+|
T Consensus 106 iI~~a~r------fGLaQLhQLR 122 (211)
T d2eyqa5 106 IIERADH------FGLAQLHQLR 122 (211)
T ss_dssp EETTTTS------SCHHHHHHHH
T ss_pred EEecchh------cccccccccc
Confidence 6544433 3467888888
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.003 Score=56.17 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=52.3
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
.+..|.+|+..++ .++-++ ++||.|||||... .-++..+.+.. ...+.+.++.+||..-|..+.+.+...
T Consensus 149 ~~~~Q~~A~~~al--~~~~~v----I~G~pGTGKTt~i-~~~l~~l~~~~---~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 149 EINWQKVAAAVAL--TRRISV----ISGGPGTGKTTTV-AKLLAALIQMA---DGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp SCCHHHHHHHHHH--TBSEEE----EECCTTSTHHHHH-HHHHHHHHHTC---SSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred cccHHHHHHHHHH--cCCeEE----EEcCCCCCceehH-HHHHHHHHHHH---hccCCeEEEecCcHHHHHHHHHHHHHH
Confidence 3778999999999 888888 9999999999763 23333333321 234678999999998888887776553
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=95.86 E-value=0.00039 Score=59.97 Aligned_cols=119 Identities=11% Similarity=-0.058 Sum_probs=76.0
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc------------------eeecCcccceec----cccc---CCcC
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV------------------RFVLGTAGFLLS----AVSF---SLPF 85 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q------------------~F~~g~~~iLva----arg~---~~~l 85 (317)
...++|+.+...+.|...|+ +||+++| .|++|+.+++|+ ++|. |+
T Consensus 38 k~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDi-- 115 (299)
T d1a1va2 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSL-- 115 (299)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCC--
T ss_pred CEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCC--
Confidence 45678888777777777665 8998886 788999999998 6654 44
Q ss_pred CCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCC--CCCCCcCCC
Q psy10677 86 RDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKT--TNNENNHNK 163 (317)
Q Consensus 86 r~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g--~~~p~~~~~ 163 (317)
..+.++.+|+.|... ++.+++.+|+++ ...|...---..+=.+--|..-.+-.+.+.| |...
T Consensus 116 ----d~V~~VI~~d~P~Sv------esyIQRiGRTGR-Gr~G~~~~l~~~t~p~~~l~s~al~~~~~ag~~w~~~----- 179 (299)
T d1a1va2 116 ----DPTFTIETTTLPQDA------VSRTQRRGRTGR-GKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYEL----- 179 (299)
T ss_dssp ----SSSCEEEEEEEECBH------HHHHHHHTTBCS-SSCEEEEESCSCCBCSCBCCHHHHHHHHHHHHHTSCC-----
T ss_pred ----CcceEEEeCCCCCCH------HHHHhhccccCC-CCCceEEEEecCCCHHHHHHHHHHHHHHHhccchhcC-----
Confidence 444568888888765 688999888887 5455321000011111115554555566667 7777
Q ss_pred CCCCCchhhhhccccc
Q psy10677 164 NKKCGDKESKNWTIPL 179 (317)
Q Consensus 164 ~~~~t~iQ~~~ip~~l 179 (317)
+|-|...+=..+
T Consensus 180 ----~~~~~~~~~~~~ 191 (299)
T d1a1va2 180 ----TPAETTVRLRAY 191 (299)
T ss_dssp ----CHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHH
Confidence 888887664443
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.85 E-value=0.00055 Score=58.88 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=48.3
Q ss_pred EEEEccCCCchhhhhhhcc--------C--------CCCccc--------eeecCcccceec----ccccCCcCCCCCCc
Q psy10677 40 FVEICHEYEKPAKWWDSNN--------G--------HYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTS 91 (317)
Q Consensus 40 ~~~~~~~~~K~~~L~~ll~--------l--------hg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d 91 (317)
..++|+..+-.+.+.+.|. + |+++++ +|++|++++||| ++|+|+ .+
T Consensus 164 ~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gld~------~~ 237 (286)
T d1wp9a2 164 IIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDV------PE 237 (286)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGS------TT
T ss_pred EEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEccceeccccC------CC
Confidence 4456666555555555543 3 445555 899999999999 999999 89
Q ss_pred ccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 92 VVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 92 ~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
...|++|++|... ..++++.++..+
T Consensus 238 ~~~Vi~~d~~~~~------~~~~Qr~GR~gR 262 (286)
T d1wp9a2 238 VDLVVFYEPVPSA------IRSIQRRGRTGR 262 (286)
T ss_dssp CCEEEESSCCHHH------HHHHHHHTTSCS
T ss_pred CCEEEEeCCCCCH------HHHHHHHHhCCC
Confidence 9999999998643 566776555444
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.60 E-value=0.0021 Score=52.03 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=45.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++|+.+|||| +.|+|+ .....++.|+.|... ...+.+.++.++..
T Consensus 118 i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gidl------~~~~~vi~~~~~~s~------~~~~Q~iGR~~R~~ 183 (200)
T d2fwra1 118 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDV------PDANVGVIMSGSGSA------REYIQRLGRILRPS 183 (200)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCS------CCBSEEEEECCSSCC------HHHHHHHHHSBCCC
T ss_pred eeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccCC------CCCCEEEEeCCCCCH------HHHHHHHHhcCCCC
Confidence 9999987 999999999999 899999 778888888877644 67888888887753
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=95.08 E-value=0.012 Score=53.20 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=48.8
Q ss_pred Cchhhhhcccccc--ccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+.=|=+||..+.+ ..| ++.+ +.|-||||||+... .++.+.. -.+|||+|+..+|.|+++.++
T Consensus 13 ~gDQP~aI~~l~~~l~~g~~~q~----l~GltGS~ka~~iA-~l~~~~~----------rp~LVVt~n~~~A~qL~~dL~ 77 (413)
T d1t5la1 13 QGDQPQAIAKLVDGLRRGVKHQT----LLGATGTGKTFTIS-NVIAQVN----------KPTLVIAHNKTLAGQLYSELK 77 (413)
T ss_dssp CTTHHHHHHHHHHHHHHTCSEEE----EEECTTSCHHHHHH-HHHHHHT----------CCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcEE----EeCCCCcHHHHHHH-HHHHHhC----------CCEEEEeCCHHHHHHHHHHHH
Confidence 7778888877762 123 4577 88999999985432 3333321 247999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 78 ~~l~~ 82 (413)
T d1t5la1 78 EFFPH 82 (413)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 99754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.57 E-value=0.054 Score=43.87 Aligned_cols=79 Identities=15% Similarity=0.052 Sum_probs=44.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-C-cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH--
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-P-TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV-- 267 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-P-treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~-- 267 (317)
.++|||+|||.+-.= +..++.+. +-++.+++ = .|.=|. ++++.+++.+++.+..+....+...-.
T Consensus 15 lvGp~GvGKTTTiaK-LA~~~~~~-------g~kV~lit~Dt~R~gA~---eQL~~~a~~l~v~~~~~~~~~~~~~~~~~ 83 (207)
T d1ls1a2 15 LVGLQGSGKTTTAAK-LALYYKGK-------GRRPLLVAADTQRPAAR---EQLRLLGEKVGVPVLEVMDGESPESIRRR 83 (207)
T ss_dssp EECCTTTTHHHHHHH-HHHHHHHT-------TCCEEEEECCSSCHHHH---HHHHHHHHHHTCCEEECCTTCCHHHHHHH
T ss_pred EECCCCCCHHHHHHH-HHHHHHHC-------CCcEEEEecccccchHH---HHHHHHHHhcCCccccccccchhhHHHHH
Confidence 689999999875322 12233332 22333443 3 366664 455666666667777666665544321
Q ss_pred ----HHc---cCcEEECcHHH
Q psy10677 268 ----ILL---RILTSATNTSL 281 (317)
Q Consensus 268 ----~~~---~~ilv~TP~~l 281 (317)
... ..|+|=|+||.
T Consensus 84 ~~~~~~~~~~d~vlIDTaGr~ 104 (207)
T d1ls1a2 84 VEEKARLEARDLILVDTAGRL 104 (207)
T ss_dssp HHHHHHHHTCCEEEEECCCCS
T ss_pred HHHHHhhccCcceeecccccc
Confidence 111 22899999975
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.43 E-value=0.043 Score=44.68 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=47.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV--- 267 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~--- 267 (317)
.++|||+|||.+.. =+..++... ...-+||=+-| |.=|. ++++.+++.+++.+.....+.+...-.
T Consensus 16 lvGptGvGKTTTiA-KLAa~~~~~------~~kV~lit~Dt~R~gA~---eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~ 85 (213)
T d1vmaa2 16 VVGVNGTGKTTSCG-KLAKMFVDE------GKSVVLAAADTFRAAAI---EQLKIWGERVGATVISHSEGADPAAVAFDA 85 (213)
T ss_dssp EECCTTSSHHHHHH-HHHHHHHHT------TCCEEEEEECTTCHHHH---HHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred EECCCCCCHHHHHH-HHHHHHHHC------CCceEEEeecccccchh---HHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence 78999999998643 222344332 12355665555 55553 456677776777776665555543211
Q ss_pred ---HHcc---CcEEECcHHH
Q psy10677 268 ---ILLR---ILTSATNTSL 281 (317)
Q Consensus 268 ---~~~~---~ilv~TP~~l 281 (317)
...+ -|+|=||||.
T Consensus 86 ~~~~~~~~~d~ilIDTaGr~ 105 (213)
T d1vmaa2 86 VAHALARNKDVVIIDTAGRL 105 (213)
T ss_dssp HHHHHHTTCSEEEEEECCCC
T ss_pred HHHHHHcCCCEEEEeccccc
Confidence 1111 2899999953
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.059 Score=43.79 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=48.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHH-
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVIL- 269 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~- 269 (317)
.++|||+|||.+.. =+..++.+. ...-+||-+=| |.=| .++++.+++.+++.+.....+.+.......
T Consensus 14 lvGptGvGKTTTiA-KLA~~~~~~------g~kV~lit~Dt~R~gA---~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~ 83 (211)
T d2qy9a2 14 MVGVNGVGKTTTIG-KLARQFEQQ------GKSVMLAAGDTFRAAA---VEQLQVWGQRNNIPVIAQHTGADSASVIFDA 83 (211)
T ss_dssp EECCTTSCHHHHHH-HHHHHHHTT------TCCEEEECCCTTCHHH---HHHHHHHHHHTTCCEECCSTTCCHHHHHHHH
T ss_pred EECCCCCCHHHHHH-HHHHHHHHC------CCcEEEEecccccccc---hhhhhhhhhhcCCcccccccCCCHHHHHHHH
Confidence 68999999997642 222344332 12344444444 5555 566777777788887777766665443321
Q ss_pred -----cc---CcEEECcHHH
Q psy10677 270 -----LR---ILTSATNTSL 281 (317)
Q Consensus 270 -----~~---~ilv~TP~~l 281 (317)
.+ -|+|=||||.
T Consensus 84 ~~~a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 84 IQAAKARNIDVLIADTAGRL 103 (211)
T ss_dssp HHHHHHTTCSEEEECCCCCG
T ss_pred HHHHHHcCCCEEEeccCCCc
Confidence 11 2899999975
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=92.91 E-value=0.1 Score=40.96 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=42.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+-++||.|+|+.-|..+.+.+.+ .|+++..+.|+++..+....+.. +||+|.
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~ 89 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 89 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCceEEEecccchHHHHHHHHHHHCCCeEEEEeee
Confidence 56899999999999888777665 38999999999998887766655 688874
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.90 E-value=0.17 Score=38.54 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=41.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|.++++.+++ .++.+..+.|+.+..++...+.. ++|||.
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~ 86 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 86 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCEEEEECchHHHHHHHhhhcc----cccccccccccchhhhhhhhhhhhhcccceeeeehh
Confidence 45799999999999888877765 37788999999988877665544 688873
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.36 E-value=0.059 Score=43.62 Aligned_cols=80 Identities=14% Similarity=0.006 Sum_probs=44.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH--
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI-- 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~-- 268 (317)
+++|||+|||.+.. =+..++... + ..-++|-+=| |.=|. ++++.+++.+++.+.....+.+......
T Consensus 11 lvGptGvGKTTTia-KLA~~~~~~-----g-~kV~lit~Dt~R~gA~---eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~ 80 (207)
T d1okkd2 11 VVGVNGVGKTTTIA-KLGRYYQNL-----G-KKVMFCAGDTFRAAGG---TQLSEWGKRLSIPVIQGPEGTDPAALAYDA 80 (207)
T ss_dssp EECSTTSSHHHHHH-HHHHHHHTT-----T-CCEEEECCCCSSTTHH---HHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred EECCCCCCHHHHHH-HHHHHHHHC-----C-CcEEEEEeccccccch---hhHhhcccccCceEEeccCCccHHHHHHHH
Confidence 79999999998642 122333322 1 1233433333 66563 4455566656677666555555443321
Q ss_pred -------HccCcEEECcHHH
Q psy10677 269 -------LLRILTSATNTSL 281 (317)
Q Consensus 269 -------~~~~ilv~TP~~l 281 (317)
...-|+|=||||.
T Consensus 81 ~~~~~~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 81 VQAMKARGYDLLFVDTAGRL 100 (207)
T ss_dssp HHHHHHHTCSEEEECCCCCC
T ss_pred HHHHHHCCCCEEEcCccccc
Confidence 1122899999974
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=92.10 E-value=0.12 Score=40.78 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=42.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.+++|.|+|++-+..+...++ ..|+++..++|+++..++...+.. +||||.
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~----~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd 89 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLK----EAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 89 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHH----TTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred CCeEEEEeehhhhhHHHHHHHH----hCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh
Confidence 4589999999998877766655 448999999999998887776655 788884
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.85 E-value=0.016 Score=46.92 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCCCccc--------eeecCcccceec----ccccCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSL 83 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~ 83 (317)
.||+|++ .|++|.+++||| ++|+|+
T Consensus 100 hh~~l~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~ 136 (201)
T d2p6ra4 100 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 136 (201)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHhhhhhHHHHHHHHhCCCceEEEechHHHhhcCC
Confidence 8999998 899999999999 999999
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.72 E-value=0.26 Score=38.11 Aligned_cols=52 Identities=4% Similarity=-0.042 Sum_probs=42.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|.|++-|..++..+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td 90 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 90 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCceEEEEeeeehhhHhHHhhhcc----cccccccccccchhhhhhhhhhcccCccccccchh
Confidence 458999999999998888777665 7788999999998877766654 688875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.48 E-value=0.13 Score=41.69 Aligned_cols=79 Identities=16% Similarity=0.023 Sum_probs=41.3
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH--
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI-- 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~-- 268 (317)
.++|||+|||.+.. =+..++... + ..-++|-+=| |.=| .++++.+++.+++.+.......+......
T Consensus 17 lvGptGvGKTTTiA-KLA~~~~~~-----g-~kV~lit~Dt~R~ga---~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a 86 (211)
T d1j8yf2 17 LVGVQGTGKATTAG-KLAYFYKKK-----G-FKVGLVGADVYRPAA---LEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 86 (211)
T ss_dssp EECSCCC----HHH-HHHHHHHHT-----T-CCEEEEECCCSSHHH---HHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred EECCCCCCHHHHHH-HHHHHHHHC-----C-CceEEEEeeccccch---hHHHHHhccccCcceeecccchhhhHHHHHH
Confidence 68999999997632 222344332 1 2245555554 5545 35566677766777666555555432111
Q ss_pred ----Hcc---CcEEECcHH
Q psy10677 269 ----LLR---ILTSATNTS 280 (317)
Q Consensus 269 ----~~~---~ilv~TP~~ 280 (317)
... .|+|=||||
T Consensus 87 ~~~~~~~~~d~IlIDTaGr 105 (211)
T d1j8yf2 87 VEKFLSEKMEIIIVDTAGR 105 (211)
T ss_dssp HHHHHHTTCSEEEEECCCS
T ss_pred HHHhhccCCceEEEecCCc
Confidence 111 289999997
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.30 E-value=0.21 Score=38.35 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=42.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
..++||.|.|+.-|.++.+.+.. .++.+..++|+.+..++...++. ++|||.
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td 85 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 85 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCcEEEEEEEEchHHHHHHHHhh----cCceEEEeccCCchhhHHHHHHHHhhcccceeeccc
Confidence 45799999999999988776544 37789999999998887766654 799985
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.25 Score=38.18 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=41.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
..++||.|+|++-+..+++.+.+ .++++..++|+.+..++...+.. ++|||.
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~ 85 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 85 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCeEEEEEeeeecchhhhhhhcc----ccccccccccccchhhhhhhhhhhccccceeeeccc
Confidence 45899999999999888776654 36788999999998887766554 688883
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=90.05 E-value=0.35 Score=38.50 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=40.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|+.-|..+...++. .++.+..++|+.+..+....+.. ++|+|-
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd 88 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 88 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CCCEEEEEeeehhhHHhhhhhcc----CCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc
Confidence 56899999999999888776655 37889999999998776655544 678774
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.16 E-value=0.15 Score=38.28 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=40.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP 278 (317)
+-++||.|+|+.-|.++++.+++. |+++..+.||.+..+....-..++|||.
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~~~~~~~~~~~~~vlvaTd 86 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSVIPTNGDVVVVATD 86 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTTCCSCCCTTSSCEEEEESS
T ss_pred CCCEEEEeCcHHHHHHHHHHHhcc----ccchhhhhccchhhhhhhhhcceeehhH
Confidence 447999999999999988888664 7889999999886554433333899994
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.12 E-value=0.22 Score=44.08 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=32.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQ 237 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~ 237 (317)
..++++ +.|+||||||.++ ..++..+... +..++|+=|..|++.
T Consensus 49 ~~~H~~----I~G~tGsGKT~~l-~~li~~~~~~-------g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 49 EPRHLL----VNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGGCEE----EEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred ccceEE----EEeCCCCcHHHHH-HHHHHHHHhC-------CCCEEEEeCChhHHH
Confidence 667888 9999999999764 4555555542 457888889888753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.2 Score=38.07 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=20.2
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
|+|+ +.||+|||||. .+--++..+...
T Consensus 2 k~v~----ItG~~GtGKTt-l~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVF----LTGPPGVGKTT-LIHKASEVLKSS 28 (189)
T ss_dssp CCEE----EESCCSSCHHH-HHHHHHHHHHHT
T ss_pred cEEE----EECCCCCcHHH-HHHHHHHHHHHC
Confidence 5677 99999999997 445666666543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=0.64 Score=35.70 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=41.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|.|++-|..+++.++.. ++.+..++|+.+..++...+.. ++|||-
T Consensus 34 ~~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td 92 (168)
T d2j0sa2 34 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 92 (168)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred CCceEEEeeeHHHHHHHHHHhhhc----ccchhhhhhhhhHHHHHHHHHHHhcCCccEEeccc
Confidence 468999999999998887776654 6778899999998887666544 788884
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=87.03 E-value=0.38 Score=42.76 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=44.5
Q ss_pred Cchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+.=|-+||..+++ .+|. .+. +.|-+||+|++ ++..+..-.. . -.|||+|+.+.|.++++.++
T Consensus 10 ~~dqp~aI~~l~~~L~~g~~~~~----L~GlsgS~ka~--~~A~l~~~~~--------r-p~LvVt~~~~~A~~l~~dL~ 74 (408)
T d1c4oa1 10 KGDQPKAIAGLVEALRDGERFVT----LLGATGTGKTV--TMAKVIEALG--------R-PALVLAPNKILAAQLAAEFR 74 (408)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEE----EEECTTSCHHH--HHHHHHHHHT--------C-CEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcEE----EecCCCCHHHH--HHHHHHHHhC--------C-CEEEEeCCHHHHHHHHHHHH
Confidence 3345446665542 1454 456 78999999974 3333322111 2 37889999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.+...
T Consensus 75 ~~l~~ 79 (408)
T d1c4oa1 75 ELFPE 79 (408)
T ss_dssp HHCTT
T ss_pred HhcCc
Confidence 99764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.75 E-value=0.1 Score=47.13 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..+|++ .+||||||||+-.
T Consensus 48 ~ksNIL----liGPTGvGKTlLA 66 (443)
T d1g41a_ 48 TPKNIL----MIGPTGVGKTEIA 66 (443)
T ss_dssp CCCCEE----EECCTTSSHHHHH
T ss_pred ccccEE----EECCCCCCHHHHH
Confidence 566899 9999999999744
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.39 Score=36.00 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=16.1
Q ss_pred eeccCCChhHHHHHHHHHHHHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++|+.||||| +++=-++.++..
T Consensus 7 itG~~GSGKT-TL~~~L~~~l~~ 28 (170)
T d1np6a_ 7 FAAWSGTGKT-TLLKKLIPALCA 28 (170)
T ss_dssp EECCTTSCHH-HHHHHHHHHHHH
T ss_pred EEcCCCCCHH-HHHHHHHHHHHH
Confidence 8999999999 444555555554
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.77 E-value=0.077 Score=43.45 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=13.5
Q ss_pred ccccCCCCChhhhcccCc
Q psy10677 135 KTLDETNIPSYILGPMKP 152 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~ 152 (317)
++|+|+-.++...+.|++
T Consensus 11 ~~~~dlig~~~~~~~L~~ 28 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKN 28 (253)
T ss_dssp SSGGGCCSCHHHHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHH
Confidence 478898888887776654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=83.46 E-value=0.19 Score=43.34 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=20.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+++++ ++|+||||||.. +-.++..+
T Consensus 165 ~~~nil----i~G~tgSGKTT~-l~al~~~i 190 (323)
T d1g6oa_ 165 IGKNVI----VCGGTGSGKTTY-IKSIMEFI 190 (323)
T ss_dssp HTCCEE----EEESTTSSHHHH-HHHHGGGS
T ss_pred hCCCEE----EEeeccccchHH-HHHHhhhc
Confidence 788999 999999999964 34444444
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=82.38 E-value=0.19 Score=44.64 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=16.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++||||||||.+. -.++..+.+
T Consensus 163 vtGpTGSGKSTTl-~~~l~~~~~ 184 (401)
T d1p9ra_ 163 VTGPTGSGKSTTL-YAGLQELNS 184 (401)
T ss_dssp EECSTTSCHHHHH-HHHHHHHCC
T ss_pred EEcCCCCCccHHH-HHHhhhhcC
Confidence 8999999999764 346777754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.10 E-value=0.36 Score=39.06 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=30.4
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
++|+|+--++.+.+.|++. +... .-.| .++ +.||+|+|||... ..++..+
T Consensus 8 ~~~~diig~~~~~~~L~~~-~~~~--------------~~~~--------~ll----l~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 8 KSLNALSHNEELTNFLKSL-SDQP--------------RDLP--------HLL----LYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp CSGGGCCSCHHHHHHHHTT-TTCT--------------TCCC--------CEE----EECSTTSSHHHHH-HTHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH-HHcC--------------CCCC--------eEE----EECCCCCCHHHHH-HHHHHhh
Confidence 4688887777777777643 1111 1112 345 9999999999654 3334444
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=81.93 E-value=0.24 Score=37.47 Aligned_cols=19 Identities=0% Similarity=-0.083 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ ++|++|||||...
T Consensus 4 k~~~I~----i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 4 KGINIL----ITGTPGTGKTSMA 22 (174)
T ss_dssp SSCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EEeCCCCCHHHHH
Confidence 567788 9999999999743
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.03 E-value=0.26 Score=40.33 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCCCccc--------eeecC-cccceec-----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLG-TAGFLLS-----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~iLva-----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|.++ ..+++++ +.|+++ ....+++.|+.+-..........-++++++...+.
T Consensus 116 i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl------~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~ 189 (244)
T d1z5za1 116 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL------TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 189 (244)
T ss_dssp ECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC------TTCSEEEECSCCSCTTTC--------------CCE
T ss_pred Eecccchhccchhhhhhhccccchhcccccccccccccc------chhhhhhhcCchhhhHHHhhhcceeeecCCCCceE
Confidence 8999987 89877 4678876 677787 66677777776644433333344455555444433
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.84 E-value=0.63 Score=35.11 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=17.1
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.++++|+.|||||. ++--++.+|..
T Consensus 3 ii~I~G~~gSGKTT-li~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTT-LMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHH-HHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHHHHHh
Confidence 34589999999994 44445555554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.75 E-value=0.3 Score=41.58 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ ..||||+|||+..
T Consensus 48 ~~~~iL----l~GPpG~GKT~lA 66 (309)
T d1ofha_ 48 TPKNIL----MIGPTGVGKTEIA 66 (309)
T ss_dssp CCCCEE----EECCTTSSHHHHH
T ss_pred CCceEE----EECCCCCCHHHHH
Confidence 456788 9999999999854
|