Psyllid ID: psy10682


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-
MSQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKIGSSQRKR
cEEEEEcccccccccccccccHHHHHHHHHccEEEEEEEcccccccEEHHHHHHHHHHHHHHHHHcccccc
ccEEEccccccccccccccccccEEEEEccccEEEEEEcccccEEcEccHHHHHHHHHHHHHHHHHccccc
msqvtpawreplpgwvdnlngptgiLVAGAKGVIRTMlcngdyhaevipvdMAINGLIVIGYKigssqrkr
msqvtpawreplpgwvdnlngpTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGykigssqrkr
MSQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKIGSSQRKR
*******WREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKI*******
MSQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYK*GS*****
MSQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKIGSSQRKR
*SQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKIGSS****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKIGSSQRKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query71 2.2.26 [Sep-21-2011]
A1ZAI5 625 Putative fatty acyl-CoA r no N/A 0.943 0.107 0.462 2e-13
Q7ZXF5 515 Fatty acyl-CoA reductase N/A N/A 0.971 0.133 0.405 5e-13
Q922J9 515 Fatty acyl-CoA reductase yes N/A 0.760 0.104 0.462 2e-12
Q66H50 515 Fatty acyl-CoA reductase yes N/A 0.760 0.104 0.462 3e-12
Q960W6 516 Putative fatty acyl-CoA r no N/A 0.971 0.133 0.405 3e-12
Q5ZM72 515 Fatty acyl-CoA reductase no N/A 0.760 0.104 0.462 4e-12
Q7TNT2 515 Fatty acyl-CoA reductase no N/A 0.859 0.118 0.475 5e-12
Q5R834 515 Fatty acyl-CoA reductase yes N/A 0.760 0.104 0.444 7e-12
Q8WVX9 515 Fatty acyl-CoA reductase yes N/A 0.760 0.104 0.444 7e-12
Q96K12 515 Fatty acyl-CoA reductase no N/A 0.859 0.118 0.459 9e-12
>sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 2   SQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIG 61
           S VT +  EP  GWVDN NGPTG++ A AKG+ RTM+C  +Y A+++PVD+ IN +I   
Sbjct: 345 SIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAA 404

Query: 62  YKIGSSQ 68
           ++  + +
Sbjct: 405 WRTATRK 411




Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2
>sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1 Back     alignment and function description
>sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1 Back     alignment and function description
>sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1 Back     alignment and function description
>sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1 Back     alignment and function description
>sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query71
307165963 313 Fatty acyl-CoA reductase 1 [Camponotus f 0.957 0.217 0.705 2e-23
332021395 522 Putative fatty acyl-CoA reductase [Acrom 0.985 0.134 0.671 7e-23
345489953 1312 PREDICTED: hypothetical protein LOC10011 0.943 0.051 0.671 8e-23
383855698 519 PREDICTED: putative fatty acyl-CoA reduc 0.985 0.134 0.671 2e-22
340729197 519 PREDICTED: putative fatty acyl-CoA reduc 0.957 0.131 0.676 2e-22
300116407 466 uncharacterized protein LOC412986 [Apis 0.957 0.145 0.691 3e-22
322800414 523 hypothetical protein SINV_08200 [Solenop 0.915 0.124 0.661 1e-21
328711866 510 PREDICTED: putative fatty acyl-CoA reduc 0.971 0.135 0.666 2e-21
157104440 502 hypothetical protein AaeL_AAEL014302 [Ae 0.901 0.127 0.718 2e-21
347970222 507 AGAP003611-PA [Anopheles gambiae str. PE 0.943 0.132 0.671 9e-21
>gi|307165963|gb|EFN60288.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 2   SQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIG 61
           S V P+++EPLPGWVDNLNGP GILV G KG+IRTM CNG+Y+AE+IPVD+AIN LI+I 
Sbjct: 89  SIVFPSYKEPLPGWVDNLNGPIGILVGGGKGIIRTMHCNGNYNAEIIPVDLAINDLIIIA 148

Query: 62  YKIGSSQR 69
           YKI +S R
Sbjct: 149 YKIATSLR 156




Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021395|gb|EGI61763.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345489953|ref|XP_001602000.2| PREDICTED: hypothetical protein LOC100117878 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383855698|ref|XP_003703347.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340729197|ref|XP_003402893.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|300116407|ref|NP_001177850.1| uncharacterized protein LOC412986 [Apis mellifera] gi|298569763|gb|ADI87410.1| putative fatty acyl-CoA reductase [Apis mellifera] Back     alignment and taxonomy information
>gi|322800414|gb|EFZ21418.1| hypothetical protein SINV_08200 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328711866|ref|XP_001949371.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157104440|ref|XP_001648409.1| hypothetical protein AaeL_AAEL014302 [Aedes aegypti] gi|108869199|gb|EAT33424.1| AAEL014302-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|347970222|ref|XP_313370.5| AGAP003611-PA [Anopheles gambiae str. PEST] gi|333468831|gb|EAA08761.5| AGAP003611-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query71
FB|FBgn0043792 506 CG30427 [Drosophila melanogast 0.971 0.136 0.608 3.1e-19
FB|FBgn0039131 531 CG12268 [Drosophila melanogast 0.971 0.129 0.585 4.1e-17
FB|FBgn0033464 517 CG1441 [Drosophila melanogaste 0.873 0.119 0.532 1.7e-16
ZFIN|ZDB-GENE-040426-2908 464 far1 "fatty acyl CoA reductase 0.985 0.150 0.428 5.3e-13
ZFIN|ZDB-GENE-060503-367 515 si:dkey-97m3.1 "si:dkey-97m3.1 0.859 0.118 0.475 1.4e-12
FB|FBgn0034145 625 CG5065 [Drosophila melanogaste 0.873 0.099 0.5 6.6e-12
FB|FBgn0034142 516 CG8306 [Drosophila melanogaste 0.971 0.133 0.405 1e-11
UNIPROTKB|E2R4R9 514 FAR1 "Uncharacterized protein" 0.901 0.124 0.406 1.6e-11
UNIPROTKB|G8ENM4 515 FAR1 "Uncharacterized protein" 0.901 0.124 0.406 1.6e-11
MGI|MGI:1914670 515 Far1 "fatty acyl CoA reductase 0.901 0.124 0.406 1.6e-11
FB|FBgn0043792 CG30427 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 237 (88.5 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 42/69 (60%), Positives = 56/69 (81%)

Query:     2 SQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIG 61
             S VTPA  EPLPGWVDN+NGPTG+L+   KGVIR+M+CNG+  +EVIPVD+AINGLI++ 
Sbjct:   234 SIVTPAVAEPLPGWVDNMNGPTGVLIGAGKGVIRSMICNGELKSEVIPVDIAINGLILLP 293

Query:    62 YKIGSSQRK 70
             Y    ++++
Sbjct:   294 YHNSLAEKR 302




GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
FB|FBgn0039131 CG12268 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033464 CG1441 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2908 far1 "fatty acyl CoA reductase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-367 si:dkey-97m3.1 "si:dkey-97m3.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0034142 CG8306 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4R9 FAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G8ENM4 FAR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914670 Far1 "fatty acyl CoA reductase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query71
cd05236320 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F 3e-21
pfam07993245 pfam07993, NAD_binding_4, Male sterility protein 5e-11
PLN02996 491 PLN02996, PLN02996, fatty acyl-CoA reductase 6e-10
PLN02503 605 PLN02503, PLN02503, fatty acyl-CoA reductase 2 0.002
>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs Back     alignment and domain information
 Score = 83.5 bits (207), Expect = 3e-21
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query: 2   SQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIG 61
           S V    +EP PGW+DN NGP G+ +A  KG++RTM  + +  A++IPVD+  N L+   
Sbjct: 220 SIVGATLKEPFPGWIDNFNGPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAAA 279

Query: 62  YKIGS 66
              G 
Sbjct: 280 AYSGV 284


SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein Back     alignment and domain information
>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase Back     alignment and domain information
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 71
KOG1221|consensus 467 99.93
PLN02503 605 fatty acyl-CoA reductase 2 99.79
PLN02996 491 fatty acyl-CoA reductase 99.46
PF07993249 NAD_binding_4: Male sterility protein; InterPro: I 97.84
>KOG1221|consensus Back     alignment and domain information
Probab=99.93  E-value=6.5e-27  Score=178.07  Aligned_cols=68  Identities=40%  Similarity=0.870  Sum_probs=65.4

Q ss_pred             ceeeeeccCCccccccCCCccceeeecceeceEEEEEeCCccccceehhhHhHHHHHHHHhhhhcccc
Q psy10682          2 SQVTPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYKIGSSQR   69 (71)
Q Consensus         2 SIV~~t~~EP~pGWidn~~g~~gl~~~~g~G~lr~~~~~~~~~~DiVPVD~vvn~iI~aa~~~~~~~~   69 (71)
                      |||+||++||+|||+||++||+|+++|+|+|++|.+++|++.++|+||||||+|++|+++|+++...+
T Consensus       234 siI~st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~  301 (467)
T KOG1221|consen  234 SIITSTYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSK  301 (467)
T ss_pred             CceeccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999998876643



>PLN02503 fatty acyl-CoA reductase 2 Back     alignment and domain information
>PLN02996 fatty acyl-CoA reductase Back     alignment and domain information
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00