Psyllid ID: psy10708

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MLISSHMNVPNPPAPASSQPQQSTSAGSNPGGGGAVSPPHQNGYTSTSSSSGGTSGSPGPGYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTSTAPVLPTTGGMDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccEEEEEEEEEccccccccccccccccccccccccEEEEccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEcccccEEEEcccccccccccEEccccccccccHHHHHHHHHHcccEEEEEEccccEEEEccccccEEEEcccccccccccccccEEEEcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEHHHHHHHHHHHHHccccccccccc
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccEEEcccccccEEEEEEEEEccccHcccccccHHHEcccccccccEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccEEEEEccccccEccEEEccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEccEEccccEEccEcccEEEEEccccccEccEEEccccccccccHHHHHHHHHHcccEEEEEEcccEEEEEEccccEEEEEcccccHccccccccEEEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccHHHHHHHHEEEEEEccccccccccccHHHcccEEEEEEHHHHHHHHHHHcccccccccccc
mlisshmnvpnppapassqpqqstsagsnpggggavspphqngytstssssggtsgspgpgyksdneeqEKRDELDSLITAIttngshpskcvTIQRTLDGRlqvagrkgfpHVIYARIwrwpdlhknelKHLKYCQYAfdlkcdsvcvnpyhyervvspgidlsglslqsgsnrlvkdeysagvtstapvlpttggmdvdgeagssgllsnqpppeywcsVAYFeldtqvgetfkvpsscpnthpgaidsvwepypmYIARTrvnepgntsillpyfeldtqvgetfkvpsscpnvtidgyvdpsggnrfclgalsnvhrtdqserarfskesglqtsclfsptgssgllsnqpppeywcsVAYFeldtqvgetfkvpsscpnvtidgyvdpsggnrfclgalsnvhrtdqserarlhigkgvqldlrgegdvWLHCLSDHSVFVQSyyldreagrapgdavhkiypsayiKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAghipgphsvggiapaislsaaagigvdDLRRLCILRLSfvkgwgpdyprqsiketpcwvEVHLHRALQLLDEVLhtmpidghrale
MLISSHMNVPNPPAPASSQPQQSTSAGSNPGGGGAVSPPHQNGYTstssssggtsgspgpgYKSDNEEQEKRDELDSLITaittngshpskcvTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEysagvtstapvlpttgGMDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVpsscpnthpgaidsvWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETfkvpsscpnvtIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPPEYWCSVAYFELDTQVGETfkvpsscpnvtIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFvkgwgpdyprqsiKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE
MLISSHMNVpnppapassqpqqstsagsNPGGGGAVSPPHQNgytstssssggtsgspgpgyKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTSTAPVLPTTGGMDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRqmqqqaataqaaaaaqaaavaGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE
******************************************************************************ITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLS************************************************EYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNV**************************************EYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI*******
*********************************************************************EKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQ**********************************************************************************************VNEPGNTSI********************CPNVTIDGYVDPSGGNRF***************RARFSKESGLQTSCLFSP**S******QPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCL**************ARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQ********AAAAQAAAVA*******************AAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVL************
************************************SPPHQ*******************************DELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTSTAPVLPTTGGMDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHR**************LQTSCLFSPTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYR*******************VAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE
**************************************P**NGY***S****************DNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQ**SNRLVKDEYSAGVTSTAPVLPTTGGMDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDG*****
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MLISSHMNVPNPPAPASSQPQQSTSAGSNPGGGGAVSPPHQNGYTSTSSSSGGTSGSPGPGYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTSTAPVLPTTGGMDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query589 2.2.26 [Sep-21-2011]
Q13485552 Mothers against decapenta yes N/A 0.390 0.416 0.892 1e-111
O70437552 Mothers against decapenta yes N/A 0.388 0.414 0.892 1e-111
Q9GKQ9552 Mothers against decapenta yes N/A 0.390 0.416 0.892 1e-111
P97471551 Mothers against decapenta yes N/A 0.390 0.417 0.892 1e-111
Q1HE26553 Mothers against decapenta yes N/A 0.390 0.415 0.892 1e-111
Q1JQA2465 Mothers against decapenta no N/A 0.672 0.851 0.328 4e-61
Q9I962465 Mothers against decapenta N/A N/A 0.672 0.851 0.326 6e-61
Q15797465 Mothers against decapenta no N/A 0.672 0.851 0.328 6e-61
P97588468 Mothers against decapenta no N/A 0.691 0.869 0.324 6e-60
P70340465 Mothers against decapenta no N/A 0.667 0.845 0.319 9e-58
>sp|Q13485|SMAD4_HUMAN Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1 Back     alignment and function desciption
 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/232 (89%), Positives = 222/232 (95%)

Query: 351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
           +SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct: 314 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRT 373

Query: 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
           +  ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct: 374 EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 433

Query: 471 YIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVD 530
           YIKVFDLRQC+RQMQQQAATAQAAAAAQAAAVAG+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct: 434 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 493

Query: 531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
           DLRRLCILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 494 DLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 545
Common SMAD (co-SMAD) is the coactivator and mediator of signal transduction by TGF-beta (transforming growth factor). Component of the heterotrimeric SMAD2/SMAD3-SMAD4 complex that forms in the nucleus and is required for the TGF-mediated signaling. Promotes binding of the SMAD2/SMAD4/FAST-1 complex to DNA and provides an activation function required for SMAD1 or SMAD2 to stimulate transcription. Component of the multimeric SMAD3/SMAD4/JUN/FOS complex which forms at the AP1 promoter site; required for syngernistic transcriptional activity in response to TGF-beta. May act as a tumor suppressor. Positively regulates PDPK1 kinase activity by stimulating its dissociation from the 14-3-3 protein YWHAQ which acts as a negative regulator.
Homo sapiens (taxid: 9606)
>sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4 OS=Rattus norvegicus GN=Smad4 PE=1 SV=1 Back     alignment and function description
>sp|Q9GKQ9|SMAD4_PIG Mothers against decapentaplegic homolog 4 OS=Sus scrofa GN=SMAD4 PE=2 SV=1 Back     alignment and function description
>sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4 OS=Mus musculus GN=Smad4 PE=1 SV=2 Back     alignment and function description
>sp|Q1HE26|SMAD4_BOVIN Mothers against decapentaplegic homolog 4 OS=Bos taurus GN=SMAD4 PE=2 SV=1 Back     alignment and function description
>sp|Q1JQA2|SMAD1_BOVIN Mothers against decapentaplegic homolog 1 OS=Bos taurus GN=SMAD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9I962|SMAD1_COTJA Mothers against decapentaplegic homolog 1 OS=Coturnix coturnix japonica GN=SMAD1 PE=2 SV=1 Back     alignment and function description
>sp|Q15797|SMAD1_HUMAN Mothers against decapentaplegic homolog 1 OS=Homo sapiens GN=SMAD1 PE=1 SV=1 Back     alignment and function description
>sp|P97588|SMAD1_RAT Mothers against decapentaplegic homolog 1 OS=Rattus norvegicus GN=Smad1 PE=1 SV=1 Back     alignment and function description
>sp|P70340|SMAD1_MOUSE Mothers against decapentaplegic homolog 1 OS=Mus musculus GN=Smad1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
270015138576 Medea [Tribolium castaneum] 0.865 0.885 0.683 0.0
328715552620 PREDICTED: mothers against decapentapleg 0.932 0.885 0.588 1e-176
328722373593 PREDICTED: mothers against decapentapleg 0.835 0.829 0.612 1e-165
19910951514 Hrsmad4 [Halocynthia roretzi] 0.757 0.867 0.599 1e-151
189233891555 PREDICTED: similar to Xsmad4a [Tribolium 0.392 0.416 0.942 1e-124
393910816615 MH2 domain-containing protein [Loa loa] 0.806 0.772 0.479 1e-117
242003054 692 smad4, putative [Pediculus humanus corpo 0.402 0.342 0.897 1e-113
321469439524 hypothetical protein DAPPUDRAFT_304115 [ 0.336 0.377 0.882 1e-112
328722340619 PREDICTED: mothers against decapentapleg 0.395 0.376 0.829 1e-112
357612797 727 putative Xsmad4a [Danaus plexippus] 0.393 0.319 0.891 1e-111
>gi|270015138|gb|EFA11586.1| Medea [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/541 (68%), Positives = 398/541 (73%), Gaps = 31/541 (5%)

Query: 69  QEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKN 128
           +EKRDELDSLITAITT+G+HPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKN
Sbjct: 47  KEKRDELDSLITAITTSGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKN 106

Query: 129 ELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTST 188
           ELKH+KYCQ+AFDLKCDSVCVNPYHYERVVSPGIDLSGL+LQSG+ RLVKDEY+AG    
Sbjct: 107 ELKHVKYCQFAFDLKCDSVCVNPYHYERVVSPGIDLSGLTLQSGTARLVKDEYTAG---- 162

Query: 189 APVLPTTGG-MDVDGEAG--SSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTH 245
               P  GG MDVD E G   S  + +QPP + +         T     +  P+     H
Sbjct: 163 ----PVPGGSMDVDSEIGIEVSQTIQHQPPQQNFALSGLQAPSTSEQGMYNSPNRPVMGH 218

Query: 246 P-----GAID----SVWEPYPMYIARTRVNEPGNTSILLPYFELDTQV--------GETF 288
           P     G +D    S W P+ M+I     N P +  +    F   T          G T 
Sbjct: 219 PVPKIEGGVDACSRSSWLPH-MHIPHRGSNPPVSPHLQQNGFNNSTHTTTAVVNNNGGTI 277

Query: 289 KVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSS 348
                    T+      +GG       L+        +             C  +    +
Sbjct: 278 SGSQPAATATMGQSFTGAGGTWTGSNTLTYTQSMQPPDNRTHHTAYWNTNQC--NDVNIA 335

Query: 349 GLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVH 408
           GLLS QP PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVH
Sbjct: 336 GLLSTQPAPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVH 395

Query: 409 RTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYP 468
           RTDQSERARLHIGKGVQLDLRGEGDVWL CLSDHSVFVQSYYLDREAGR PGDAVHKIYP
Sbjct: 396 RTDQSERARLHIGKGVQLDLRGEGDVWLRCLSDHSVFVQSYYLDREAGRQPGDAVHKIYP 455

Query: 469 SAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIG 528
           SAYIKVFDLRQC+ QM  QAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAA GIG
Sbjct: 456 SAYIKVFDLRQCHNQMTTQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAATGIG 515

Query: 529 VDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRAL 588
           VDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVE+HLHRALQLLDEVLHTMPIDG R +
Sbjct: 516 VDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEIHLHRALQLLDEVLHTMPIDGPRGI 575

Query: 589 E 589
           E
Sbjct: 576 E 576

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328715552|ref|XP_001946643.2| PREDICTED: mothers against decapentaplegic homolog 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328722373|ref|XP_001944884.2| PREDICTED: mothers against decapentaplegic homolog 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|19910951|dbj|BAB87723.1| Hrsmad4 [Halocynthia roretzi] Back     alignment and taxonomy information
>gi|189233891|ref|XP_971429.2| PREDICTED: similar to Xsmad4a [Tribolium castaneum] Back     alignment and taxonomy information
>gi|393910816|gb|EFO19570.2| MH2 domain-containing protein [Loa loa] Back     alignment and taxonomy information
>gi|242003054|ref|XP_002422593.1| smad4, putative [Pediculus humanus corporis] gi|212505394|gb|EEB09855.1| smad4, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|321469439|gb|EFX80419.1| hypothetical protein DAPPUDRAFT_304115 [Daphnia pulex] Back     alignment and taxonomy information
>gi|328722340|ref|XP_001949672.2| PREDICTED: mothers against decapentaplegic homolog 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357612797|gb|EHJ68172.1| putative Xsmad4a [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
MGI|MGI:894293551 Smad4 "SMAD family member 4" [ 0.405 0.433 0.782 1.2e-162
RGD|3033552 Smad4 "SMAD family member 4" [ 0.405 0.432 0.782 2e-162
UNIPROTKB|O70437552 Smad4 "Mothers against decapen 0.405 0.432 0.782 2e-162
UNIPROTKB|Q9GKQ9552 SMAD4 "Mothers against decapen 0.405 0.432 0.782 8.5e-162
UNIPROTKB|Q13485552 SMAD4 "Mothers against decapen 0.405 0.432 0.782 1.1e-161
UNIPROTKB|F1PAY5552 SMAD4 "Uncharacterized protein 0.405 0.432 0.782 1.4e-161
UNIPROTKB|B0JYL0553 SMAD4 "SMAD family member 4" [ 0.405 0.432 0.782 1.4e-161
UNIPROTKB|Q1HE26553 SMAD4 "Mothers against decapen 0.405 0.432 0.782 1.4e-161
FB|FBgn0011655771 Med "Medea" [Drosophila melano 0.397 0.303 0.781 1.4e-161
UNIPROTKB|K7EIU8456 SMAD4 "Mothers against decapen 0.441 0.570 0.721 6.8e-160
MGI|MGI:894293 Smad4 "SMAD family member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 1031 (368.0 bits), Expect = 1.2e-162, Sum P(2) = 1.2e-162
 Identities = 187/239 (78%), Positives = 204/239 (85%)

Query:   351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
             +SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct:   313 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPVVTVDGYVDPSGGDRFCLGQLSNVHRT 372

Query:   411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
             +  ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct:   373 EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 432

Query:   471 YIKVFDLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVD 530
             YIKVFDLRQC+R                     G+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct:   433 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 492

Query:   531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE 589
             DLRRLCILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI   + L+
Sbjct:   493 DLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD 551
GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=ISO
GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IGI
GO:0001666 "response to hypoxia" evidence=ISO
GO:0001701 "in utero embryonic development" evidence=IMP
GO:0001702 "gastrulation with mouth forming second" evidence=IMP
GO:0001822 "kidney development" evidence=IMP
GO:0003360 "brainstem development" evidence=IMP
GO:0003677 "DNA binding" evidence=ISO;IDA
GO:0003682 "chromatin binding" evidence=IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005518 "collagen binding" evidence=IPI
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISO;IDA
GO:0005667 "transcription factor complex" evidence=ISO;IPI
GO:0005737 "cytoplasm" evidence=ISO;IDA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=ISO;IGI
GO:0007183 "SMAD protein complex assembly" evidence=ISO
GO:0007369 "gastrulation" evidence=IMP
GO:0007411 "axon guidance" evidence=IMP
GO:0007492 "endoderm development" evidence=IMP
GO:0007498 "mesoderm development" evidence=IMP
GO:0008283 "cell proliferation" evidence=IMP
GO:0008285 "negative regulation of cell proliferation" evidence=IGI
GO:0009952 "anterior/posterior pattern specification" evidence=IMP
GO:0010718 "positive regulation of epithelial to mesenchymal transition" evidence=IMP
GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IMP
GO:0014033 "neural crest cell differentiation" evidence=IMP
GO:0017015 "regulation of transforming growth factor beta receptor signaling pathway" evidence=ISO
GO:0030308 "negative regulation of cell growth" evidence=ISO
GO:0030509 "BMP signaling pathway" evidence=ISO
GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=ISO
GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISO
GO:0030616 "transforming growth factor beta receptor, common-partner cytoplasmic mediator activity" evidence=ISO
GO:0031005 "filamin binding" evidence=ISO
GO:0032444 "activin responsive factor complex" evidence=ISO
GO:0032525 "somite rostral/caudal axis specification" evidence=IMP
GO:0032909 "regulation of transforming growth factor beta2 production" evidence=ISO
GO:0042127 "regulation of cell proliferation" evidence=IGI;IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=ISO
GO:0042802 "identical protein binding" evidence=ISO
GO:0042803 "protein homodimerization activity" evidence=ISO
GO:0043234 "protein complex" evidence=ISO
GO:0044212 "transcription regulatory region DNA binding" evidence=ISO
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI;IMP;IDA
GO:0046332 "SMAD binding" evidence=ISO
GO:0046872 "metal ion binding" evidence=IEA
GO:0048589 "developmental growth" evidence=IMP
GO:0048663 "neuron fate commitment" evidence=IMP
GO:0048729 "tissue morphogenesis" evidence=IMP
GO:0048733 "sebaceous gland development" evidence=IMP
GO:0048859 "formation of anatomical boundary" evidence=IMP
GO:0051098 "regulation of binding" evidence=IDA
GO:0051797 "regulation of hair follicle development" evidence=IMP
GO:0060021 "palate development" evidence=IMP
GO:0060391 "positive regulation of SMAD protein import into nucleus" evidence=IMP
GO:0060395 "SMAD protein signal transduction" evidence=ISO
GO:0060548 "negative regulation of cell death" evidence=IMP
GO:0070411 "I-SMAD binding" evidence=ISO
GO:0070412 "R-SMAD binding" evidence=ISO
GO:0071141 "SMAD protein complex" evidence=ISO
GO:0071559 "response to transforming growth factor beta stimulus" evidence=ISO
GO:0072133 "metanephric mesenchyme morphogenesis" evidence=IMP
GO:0072134 "nephrogenic mesenchyme morphogenesis" evidence=IMP
RGD|3033 Smad4 "SMAD family member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O70437 Smad4 "Mothers against decapentaplegic homolog 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKQ9 SMAD4 "Mothers against decapentaplegic homolog 4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q13485 SMAD4 "Mothers against decapentaplegic homolog 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAY5 SMAD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYL0 SMAD4 "SMAD family member 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q1HE26 SMAD4 "Mothers against decapentaplegic homolog 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0011655 Med "Medea" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|K7EIU8 SMAD4 "Mothers against decapentaplegic homolog 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P97471SMAD4_MOUSENo assigned EC number0.89220.39040.4174yesN/A
Q9GKQ9SMAD4_PIGNo assigned EC number0.89220.39040.4166yesN/A
Q1HE26SMAD4_BOVINNo assigned EC number0.89220.39040.4159yesN/A
Q13485SMAD4_HUMANNo assigned EC number0.89220.39040.4166yesN/A
O70437SMAD4_RATNo assigned EC number0.89220.38870.4148yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
cd10498222 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH 1e-171
pfam03166179 pfam03166, MH2, MH2 domain 1e-88
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 9e-84
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 8e-81
cd10492125 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH 5e-67
cd10495182 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH 5e-57
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 2e-52
cd00049121 cd00049, MH1, N-terminal Mad Homology 1 (MH1) doma 1e-50
cd10497201 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 8e-48
pfam03165103 pfam03165, MH1, MH1 domain 2e-45
smart00523109 smart00523, DWA, Domain A in dwarfin family protei 2e-42
cd10491124 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 ( 4e-37
cd10488123 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH 6e-35
cd10490124 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 1e-32
cd10498222 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH 6e-32
cd10496165 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH 4e-31
cd10499174 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH 3e-26
cd10500171 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH 2e-21
pfam03166179 pfam03166, MH2, MH2 domain 1e-19
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 3e-19
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 3e-18
cd10489119 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 ( 7e-16
cd10493113 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH 1e-15
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 3e-13
cd10495182 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH 2e-12
cd10497201 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 3e-08
cd10494123 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH 9e-08
pfam03166179 pfam03166, MH2, MH2 domain 7e-07
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 1e-05
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 4e-05
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 2e-04
>gnl|CDD|199823 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH2) domain in SMAD4 Back     alignment and domain information 
 Score =  485 bits (1250), Expect = e-171
 Identities = 207/222 (93%), Positives = 216/222 (97%)

Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
           PEYWCS+AYFELDTQVGETFKVPSSCP VT+DGYVDPSGGNRFCLG LSNVHRT+ SERA
Sbjct: 1   PEYWCSIAYFELDTQVGETFKVPSSCPTVTVDGYVDPSGGNRFCLGQLSNVHRTEASERA 60

Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
           RLHIGKGVQLD +GEGDVWL CLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD
Sbjct: 61  RLHIGKGVQLDCKGEGDVWLRCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 120

Query: 477 LRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
           LRQC+RQMQQQAATAQAAAAAQAAAVAG+IPGP SVGGIAPAISLSAAAGIGVDDLRRLC
Sbjct: 121 LRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLC 180

Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLH 578
           ILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLH
Sbjct: 181 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLH 222

The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. SMAD4, which belongs to the Dwarfin family of proteins, is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and the cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer, cervical cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome. Length = 222
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199816 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH1) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199820 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199811 cd00049, MH1, N-terminal Mad Homology 1 (MH1) domain Back     alignment and domain information
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9 Back     alignment and domain information
>gnl|CDD|217397 pfam03165, MH1, MH1 domain Back     alignment and domain information
>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199815 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199812 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199814 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8) Back     alignment and domain information
>gnl|CDD|199823 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH2) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199821 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs Back     alignment and domain information
>gnl|CDD|199824 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH2) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199825 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH2) domain in SMAD7 Back     alignment and domain information
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|199813 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7 Back     alignment and domain information
>gnl|CDD|199817 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH1) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199820 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9 Back     alignment and domain information
>gnl|CDD|199818 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH1) domain in SMAD7 Back     alignment and domain information
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 589
KOG3701|consensus411 100.0
cd00050176 MH2 MH2 domain; C terminal domain of SMAD family p 100.0
smart00524171 DWB Domain B in dwarfin family proteins. 100.0
PF03166181 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwa 100.0
cd00049121 MH1 MH1 is a small DNA binding domain, binding in 100.0
smart00523109 DWA Domain A in dwarfin family proteins. 100.0
PF03165103 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa 100.0
PF10401180 IRF-3: Interferon-regulatory factor 3; InterPro: I 97.83
KOG3663|consensus518 86.17
>KOG3701|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.6e-112  Score=893.23  Aligned_cols=390  Identities=45%  Similarity=0.727  Sum_probs=294.9

Q ss_pred             ccccCCCCcc-CCCCC------ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEEEE
Q psy10708         46 STSSSSGGTS-GSPGP------GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYAR  118 (589)
Q Consensus        46 ~~~~~~~~~~-~~~~~------~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviycR  118 (589)
                      ..-.++||++ |.+++      .++||||||||+++||+|++||+++|..+++||||||+|||||||++||++|||||||
T Consensus        11 ~v~~~~~~r~~~~~~e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~CvtiprslD~Rlq~~~rkg~Phviy~r   90 (411)
T KOG3701|consen   11 AVKDLLGPRQLGGEDEKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIPRSLDGRLQVAHRKGFPHVIYCR   90 (411)
T ss_pred             chhhccCccccCchhHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECCCCCCccccccCCCCCCceEEEE
Confidence            4456899999 77776      7899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCc-ccccccccccccccCCCCeeeeCCccccceecCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCCC
Q psy10708        119 IWRWPDLHK-NELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTSTAPVLPTTGG  197 (589)
Q Consensus       119 lwRWPDL~~-~ELk~l~~C~~~~~~~~~~vC~NPYHY~Rv~~Pgidl~~l~l~~~pp~lv~~e~~~~~~~~~~~~~~~~~  197 (589)
                      |||||||++ +|||++++|+++|+.+.+.||||||||+||+.|.+.++.+...+       .++...... ..+....+ 
T Consensus        91 lwRwpdl~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~-  161 (411)
T KOG3701|consen   91 LWRWPDLQKNHELKRLECCEHAFESKSDNVCINPYHYSRVESPPILPPPLSPNS-------PPNDALKTL-LDDGGVDI-  161 (411)
T ss_pred             eecccccccchhheecccCCccccCCCCCeeeCCcccceeecCCCCCcccCCCC-------Cccccccch-hhcccccc-
Confidence            999999987 79999999999999999999999999999999977444333322       122100000 00000000 


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccccccccccccCcccccCCCCCCCCCCCCCCcCCCCcccccccccCCCCCCcCCCCc
Q psy10708        198 MDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPY  277 (589)
Q Consensus       198 ~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (589)
                      . ...++.+..+......                    ..+.++                                ...+
T Consensus       162 ~-~~~~P~n~~~~~~~~~--------------------~~~~tp--------------------------------~~~~  188 (411)
T KOG3701|consen  162 V-NRSMPQNNHSSDLIGP--------------------HAPHTP--------------------------------DSSQ  188 (411)
T ss_pred             c-ccCCCccccccccccc--------------------CCCCCC--------------------------------Cccc
Confidence            0 0011111111000000                    000000                                0000


Q ss_pred             cccCCCCCCcccCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCccccccccccCCCCCCccCCCCCCCCCCCCCCCC
Q psy10708        278 FELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPP  357 (589)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p  357 (589)
                         .+.|.                   .+.+   ..+.      +      ++.+..|   .+.|    ...++. ++++
T Consensus       189 ---~~~P~-------------------~~~~---p~s~------~------~~~~~~P---~~~P----~~~~~~-~~~~  223 (411)
T KOG3701|consen  189 ---IPAPL-------------------GDGG---PSSD------S------SALPGLP---TDSP----DVGPVH-YEEP  223 (411)
T ss_pred             ---CCCCC-------------------CCCC---CCCc------c------cccCCCC---CCCC----ccCccc-ccCC
Confidence               00000                   0000   0000      0      0000000   0000    111222 4689


Q ss_pred             CceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcEEEE
Q psy10708        358 EYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLH  437 (589)
Q Consensus       358 ~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~Vwl~  437 (589)
                      ++||+|+|||+++||||+|+|  +.++|+||||+|+++++|||||+|+|++|++++|++|+|||+||+|++++ |+|||+
T Consensus       224 ~~WcsIaYyEl~~rVGE~f~v--~~~~~~vDG~~dps~~~rfcLgqlsn~~Rn~~~e~~R~~IG~GV~L~~~~-gdVw~~  300 (411)
T KOG3701|consen  224 KSWCSIAYYELNTRVGETFHV--PGPSITVDGFTDPSNGSRFCLGQLSNVNRNEKVEKTRAHIGKGVQLSYEN-GDVWLY  300 (411)
T ss_pred             cceeEEEEeeccccccceEEe--cCCceEEeeeecCCCCCceeeccccCCCccchhHHHHhhccCceeeeEec-CcEEEE
Confidence            999999999999999999999  67799999999999999999999999999999999999999999999997 999999


Q ss_pred             ecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCc
Q psy10708        438 CLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAP  517 (589)
Q Consensus       438 nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g~~P  517 (589)
                      |+|+++|||||++||+++|+++ ++||||+||++|||||+ +|.++             +++++..          |+  
T Consensus       301 n~sd~pIFVqS~~ln~~~g~~~-~~v~ki~Pg~~iKvFd~-~~~~~-------------l~~s~~~----------g~--  353 (411)
T KOG3701|consen  301 NLSDYPIFVQSPNLNYPNGRTL-DTVHKVPPGYSIKVFDF-EFAQQ-------------LPTSADP----------GF--  353 (411)
T ss_pred             ecCCCceeeeCCCCcCCCCCcc-cceEeeCCCceeEeech-HHHhh-------------hhhcccC----------CC--
Confidence            9999999999999999999999 89999999999999999 43221             1222222          22  


Q ss_pred             hhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHHHccCC
Q psy10708        518 AISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMP  581 (589)
Q Consensus       518 ~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~VL~qm~  581 (589)
                               +++|+|++||+||||||||||++|+||+||+||||||||||+||||||+||+|||
T Consensus       354 ---------~~~~~l~~~ctIriSFvKGWG~~Y~Rq~It~~PCWiEvhl~~p~~~lD~vl~~~~  408 (411)
T KOG3701|consen  354 ---------ESVDQLRKMCTIRISFVKGWGECYSRQDITSTPCWIEVHLNGPLQWLDTVLTQMG  408 (411)
T ss_pred             ---------ccccccccceeEEEEEeccccccccccccccCcceEEEecCCcHHHHHHHHhhcC
Confidence                     5899999999999999999999999999999999999999999999999999999

>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins Back     alignment and domain information
>smart00524 DWB Domain B in dwarfin family proteins Back     alignment and domain information
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove Back     alignment and domain information
>smart00523 DWA Domain A in dwarfin family proteins Back     alignment and domain information
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>PF10401 IRF-3: Interferon-regulatory factor 3; InterPro: IPR019471 This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein Back     alignment and domain information
>KOG3663|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
1u7v_B236 Crystal Structure Of The Phosphorylated Smad2SMAD4 1e-109
1u7f_B239 Crystal Structure Of The Phosphorylated Smad3SMAD4 1e-109
1dd1_A268 Crystal Structure Analysis Of The Smad4 Active Frag 1e-108
1g88_A268 S4afl3arg515 Mutant Length = 268 1e-107
1mr1_A235 Crystal Structure Of A Smad4-Ski Complex Length = 2 1e-107
1ygs_A234 Crystal Structure Of The Smad4 Tumor Suppressor C-T 1e-106
3qsv_A132 Structural Basis For Dna Recognition By Constitutiv 4e-46
1khx_A227 Crystal Structure Of A Phosphorylated Smad2 Length 7e-40
1u7v_A198 Crystal Structure Of The Phosphorylated Smad2SMAD4 1e-39
1dev_A196 Crystal Structure Of Smad2 Mh2 Domain Bound To The 1e-39
1mjs_A197 Mh2 Domain Of Transcriptional Factor Smad3 Length = 3e-39
1u7f_A198 Crystal Structure Of The Phosphorylated Smad3SMAD4 4e-39
1mk2_A206 Smad3 Sbd Complex Length = 206 4e-39
1khu_A218 Smad1 Crystal Structure Reveals The Details Of Bmp 2e-37
3gmj_D245 Crystal Structure Of Mad Mh2 Domain Length = 245 4e-35
3dit_A188 Crystal Structure Of Mad Mh2 Domain Length = 188 5e-34
1mhd_A132 Crystal Structure Of A Smad Mh1 Domain Bound To Dna 1e-26
1ozj_A144 Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 2e-26
3kmp_A124 Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 8e-22
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 236 Back     alignment and structure 
Iteration: 1

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/232 (80%), Positives = 201/232 (86%)
Query: 351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
           +SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct: 1   ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRT 60
Query: 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
           +  ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct: 61  EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 120
Query: 471 YIKVFDLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVD 530
           YIKVFDLRQC+R                     G+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct: 121 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 180
Query: 531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
           DLRRLCILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 181 DLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 232
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 239 Back     alignment and structure
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment Length = 268 Back     alignment and structure
>pdb|1G88|A Chain A, S4afl3arg515 Mutant Length = 268 Back     alignment and structure
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex Length = 235 Back     alignment and structure
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal Domain Length = 234 Back     alignment and structure
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4 Mh1 Dimers Length = 132 Back     alignment and structure
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2 Length = 227 Back     alignment and structure
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad- Binding Domain Of Sara Length = 196 Back     alignment and structure
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3 Length = 197 Back     alignment and structure
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1MK2|A Chain A, Smad3 Sbd Complex Length = 206 Back     alignment and structure
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp Signaling Pathway Length = 218 Back     alignment and structure
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain Length = 245 Back     alignment and structure
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain Length = 188 Back     alignment and structure
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna Length = 132 Back     alignment and structure
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A Resolution Length = 144 Back     alignment and structure
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 1e-107
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 2e-17
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 1e-107
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 4e-17
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 2e-72
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 1e-13
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 6e-70
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 2e-12
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 8e-06
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 6e-46
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 7e-40
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 4e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Length = 234 Back     alignment and structure
 Score =  320 bits (821), Expect = e-107
 Identities = 205/233 (87%), Positives = 221/233 (94%)

Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
           PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+  ERA
Sbjct: 2   PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 61

Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
           RLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD
Sbjct: 62  RLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 121

Query: 477 LRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
           LRQC+RQMQQQAATAQAAAAAQAAAVAG+IPGP SVGGIAPAISLSAAAGIGVDDLRRLC
Sbjct: 122 LRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLC 181

Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE 589
           ILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI   + L+
Sbjct: 182 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD 234
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Length = 234 Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Length = 268 Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Length = 268 Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Length = 227 Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Length = 227 Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Length = 132 Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Length = 124 Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Length = 144 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 100.0
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 100.0
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 100.0
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 100.0
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 100.0
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 100.0
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 100.0
3a77_A242 IRF-3, interferon regulatory factor 3; phosphoryla 97.11
3dsh_A246 IRF-5, interferon regulatory factor 5; phosphoacti 96.6
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Back     alignment and structure
Probab=100.00  E-value=9e-91  Score=700.40  Aligned_cols=259  Identities=80%  Similarity=1.295  Sum_probs=206.2

Q ss_pred             cccCC-CCCCccCC--CCCCCCCCCCCCCCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCC
Q psy10708        331 SKESG-LQTSCLFS--PTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNV  407 (589)
Q Consensus       331 ~p~~~-~~~~~~~~--~~~~~~~~~~~~~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv  407 (589)
                      +||++ ++++||+.  +...++++.+++++++||+|+|||+|+||||+|++.++.++|+||||+||++++|||||+|+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WCsIaYyEln~rVGe~f~~~~~~~~v~VDGf~dps~~~RfCLg~lsN~   86 (268)
T 1dd1_A            7 HPPMPPHPGHYWPVHNELAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNV   86 (268)
T ss_dssp             ECCCCC--------------CCCSCCSCCCSEEEEEEEEETTEECSCCEEEETTCSEEEEESCCCCCCTTEEECSSCCCT
T ss_pred             CCCCCCCCCcccccccccccCCccccCCCCCceEEEEEEecCceecceEEecCCCCEEEEecCCCCCCCCeeecccccCC
Confidence            44544 45678875  3345567888899999999999999999999999988899999999999999999999999999


Q ss_pred             CCChhhHHHHHcccCceEEEEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHH
Q psy10708        408 HRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQ  487 (589)
Q Consensus       408 ~R~~~ve~tR~hIGkGV~L~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~  487 (589)
                      +|+++++++|+|||+||+|+++++|+|||+|+|+++|||||++||+++|++|+|+||||+||++|||||+++|+++|+++
T Consensus        87 ~R~~~ve~~R~~IG~GV~L~~~~~G~Vwl~nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD~~~f~~~l~~~  166 (268)
T 1dd1_A           87 HRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQ  166 (268)
T ss_dssp             TCCHHHHHHHTTTTTCEEEEEETTTEEEEEECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEECHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhhcCceEEEEecCCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeccHHHHHHHHHH
Confidence            99999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcc
Q psy10708        488 AATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLH  567 (589)
Q Consensus       488 ~~~~q~aa~~q~~~v~g~~~gp~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~  567 (589)
                      ++++|+|+..|+|.+.|.++++++++|+.|+++|+++|+++||+|+|||+||||||||||++|+||+||+||||||||||
T Consensus       167 ~~~~q~a~~~q~a~~~g~~~~~~~~~g~~p~~~~~~~a~~~v~~L~~~C~iRISFVKGWG~~Y~Rq~ItstPCWIEI~L~  246 (268)
T 1dd1_A          167 AATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLH  246 (268)
T ss_dssp             HHHHTTTTCC--------------------------CCSCCHHHHHGGGEEEEEESCCCSTTSSCCSGGGSSSEEEEEEH
T ss_pred             HHhhhhhhhhhhhhhccccCCcccccccccccccccccccchhhhhhceeEEEEEEcCCCCCCCCCCCCcCCeEEEEEcC
Confidence            99988887788899999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHccCCCCCCCCCC
Q psy10708        568 RALQLLDEVLHTMPIDGHRALE  589 (589)
Q Consensus       568 ~pLqwLD~VL~qm~~~~~~~~~  589 (589)
                      +||||||+||+|||+++++++|
T Consensus       247 ~pLq~LD~vl~~m~~~~~~~~~  268 (268)
T 1dd1_A          247 RALQLLDEVLHTMPIADPQPLD  268 (268)
T ss_dssp             HHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999998865
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1 Back     alignment and structure
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A Back     alignment and structure
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 589
d1ygsa_225 b.26.1.1 (A:) Smad4 tumor suppressor C-terminal do 1e-124
d1ygsa_225 b.26.1.1 (A:) Smad4 tumor suppressor C-terminal do 4e-22
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 1e-91
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 7e-19
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 9e-08
d1ozja_126 d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapien 3e-45
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: SMAD domain
domain: Smad4 tumor suppressor C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  362 bits (930), Expect = e-124
 Identities = 202/224 (90%), Positives = 216/224 (96%)

Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
           PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+  ERA
Sbjct: 2   PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 61

Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
           RLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD
Sbjct: 62  RLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 121

Query: 477 LRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
           LRQC+RQMQQQAATAQAAAAAQAAAVAG+IPGP SVGGIAPAISLSAAAGIGVDDLRRLC
Sbjct: 122 LRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLC 181

Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
           ILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTM
Sbjct: 182 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTM 225
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
d1ygsa_225 Smad4 tumor suppressor C-terminal domain {Human (H 100.0
d1mjsa_190 Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 960 100.0
d1ozja_126 SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606 100.0
d1qwta_239 Interferon regulatory factor 3 (IRF3), transactiva 97.88
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: SMAD domain
domain: Smad4 tumor suppressor C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-87  Score=660.01  Aligned_cols=225  Identities=90%  Similarity=1.469  Sum_probs=186.6

Q ss_pred             CCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcEE
Q psy10708        356 PPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVW  435 (589)
Q Consensus       356 ~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~Vw  435 (589)
                      .|++||+|+|||+|+||||+|+|.++.++|+||||+||++++|||||+|+|++|++++|++|+|||+||+|+++++|+||
T Consensus         1 ~p~~Wc~IaYyEl~~RVGe~f~~~~~~~~i~vdGf~d~~~g~rfcLg~lsn~~R~~~ve~tR~~IG~GV~L~~~~~G~Vw   80 (225)
T d1ygsa_           1 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVW   80 (225)
T ss_dssp             CCSEEEEEEEEETTEEEEEEEEEETTCSEEEEESSCCTTCSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEEE
T ss_pred             CCCceeEEEEEecCcccccceeccCCCCEEEEcCCcCCCCCCEEEecccCCCCCcHHHHHHHhhccCceEEEEecCCcEE
Confidence            37899999999999999999999877899999999999999999999999999999999999999999999999889999


Q ss_pred             EEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy10708        436 LHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGI  515 (589)
Q Consensus       436 l~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g~  515 (589)
                      ++|+|++||||||++||++++++++++||||+||++|||||+++|+++|++++.+++.|+..|++++.|..++|+....+
T Consensus        81 ~~n~S~~pIFVqS~~l~~~~~~~p~~~V~Kv~pg~~lKvFd~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  160 (225)
T d1ygsa_          81 VRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGI  160 (225)
T ss_dssp             EEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEEEECHHHHHHHHHHHHHHHTC----------------------
T ss_pred             EEecCCCCeEecCCccCCcCCcCCCccEEEcCCCCcEEecChHHHHHHHHHhhhhccchhhhhhhhcccccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHHHccC
Q psy10708        516 APAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM  580 (589)
Q Consensus       516 ~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~VL~qm  580 (589)
                      .|+..++++++++||+|+|||+||||||||||++|+||+||+||||||||||+||||||+||+||
T Consensus       161 ~~~~~~~~~~~~~v~~L~k~C~iRiSFvKGWG~~Y~Rq~ItstPCWiEi~L~~pl~~lD~vL~~m  225 (225)
T d1ygsa_         161 APAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTM  225 (225)
T ss_dssp             -------------CHHHHHTTEEEEESSCCCSTTSSCSSGGGSSSEEEEEEHHHHHHHHHHHHTC
T ss_pred             ccccccccccccchhhhheeeeEEEEEEcccCCCCcCCCcCcCCeEEEEEcchHHHHHHHHHhcC
Confidence            88889999999999999999999999999999999999999999999999999999999999999
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure