Psyllid ID: psy10716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MFIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKFKVKHKEVK
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcEEccccccccccccccEccccccHHHHHHHHHHHccHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHEEEEEEccccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MFIITFISYRINIIFWtvgpgltglknlgntcyINSILQclsntsplrEYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWagdsryfspqkfkvKHELVGKFKVKVDKRLGKFKVKHKEVK
Flexible Loop (DISEMBL)
MFIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVkhelvgkfkvkvdkrlgkfkvkhkevk
Low Complexity Region (SEG)
MFIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKFKVKHKEVK
Disordered region (IsUnstruct)
*FIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKF********
Disordered Region (DISOPRED)
*FIIT**SYRIN*I**TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKFKVKH****
Disordered Region (DISEMBL)
MFIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKF********
Disordered Region (DISPRO)
MFIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKFKVKHK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFIITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKVKVDKRLGKFKVKHKEVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q80U87	1080	Ubiquitin carboxyl-termin	yes	N/A	0.674	0.076	0.483	2e-17
P40818	1118	Ubiquitin carboxyl-termin	yes	N/A	0.674	0.074	0.472	8e-17
P35123	962	Ubiquitin carboxyl-termin	no	N/A	0.658	0.084	0.413	5e-14
B2GUZ1	961	Ubiquitin carboxyl-termin	no	N/A	0.658	0.084	0.413	7e-14
A6QR55	963	Ubiquitin carboxyl-termin	no	N/A	0.658	0.084	0.413	1e-13
Q5RCD3	963	Ubiquitin carboxyl-termin	no	N/A	0.658	0.084	0.402	1e-13
Q13107	963	Ubiquitin carboxyl-termin	no	N/A	0.658	0.084	0.402	1e-13
Q9R085	952	Ubiquitin carboxyl-termin	no	N/A	0.658	0.085	0.409	2e-13
Q8R5H1	981	Ubiquitin carboxyl-termin	no	N/A	0.658	0.082	0.409	2e-13
Q9Y4E8	981	Ubiquitin carboxyl-termin	no	N/A	0.658	0.082	0.409	2e-13

>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct: 727 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH-- 784

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FKV
Sbjct: 785 -KGEVAEEFGIIMKALWTGQYRYISPKDFKV 814

Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct: 765 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH-- 822

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 823 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 852

Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 11/92 (11%)

Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTS-----GKLAE 72
           + PGL GL NLGNTC++NS LQCLSNT+PL EYF+   K    A  ++ +     G++AE
Sbjct: 297 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFL---KDEYEAEINRDNPLGMKGEIAE 353

Query: 73  EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
            +  +   +W+G   + +P+ FK +   VG+F
Sbjct: 354 AYAELIKQMWSGRDTHVAPRMFKTQ---VGRF 382

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 11/92 (11%)

Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTS-----GKLAE 72
           + PGL GL NLGNTC++NS LQCLSNT PL EYF+   K    A  ++ +     G++AE
Sbjct: 297 IQPGLCGLGNLGNTCFMNSALQCLSNTGPLTEYFL---KDEYEAEINRDNPLGMKGEIAE 353

Query: 73  EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
            +  +   +W+G   + +P+ FK +   VG+F
Sbjct: 354 AYAELIKQMWSGRDTHVAPRMFKTQ---VGRF 382

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 11/92 (11%)

Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTS-----GKLAE 72
           V PGL GL NLGNTC++NS LQCLSNT+PL +YF+   K    A  ++ +     G++AE
Sbjct: 297 VQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFL---KDEYEAEINRDNPLGMKGEIAE 353

Query: 73  EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
            +  +   +W+G   + +P+ FK +   VG+F
Sbjct: 354 AYAELIKQMWSGRDAHVAPRMFKTQ---VGRF 382

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 11/92 (11%)

Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTS-----GKLAE 72
           + PGL GL NLGNTC++NS LQCLSNT+PL +YF+   K    A  ++ +     G++AE
Sbjct: 297 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFL---KDEYEAEINRDNPLGMKGEIAE 353

Query: 73  EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
            +  +   +W+G   + +P+ FK +   VG+F
Sbjct: 354 AYAELIKQMWSGRDAHVAPRMFKTQ---VGRF 382

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 11/92 (11%)

Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTS-----GKLAE 72
           + PGL GL NLGNTC++NS LQCLSNT+PL +YF+   K    A  ++ +     G++AE
Sbjct: 297 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFL---KDEYEAEINRDNPLGMKGEIAE 353

Query: 73  EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
            +  +   +W+G   + +P+ FK +   VG+F
Sbjct: 354 AYAELIKQMWSGRDAHVAPRMFKTQ---VGRF 382

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 20  PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSK---TSGKLAEEFQL 76
           PGL GL NLGNTC++NS +QCLSNT PL EYF+ + K      +       G++A+ +  
Sbjct: 257 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLND-KYQEELNFDNPLGMRGEIAKSYAE 315

Query: 77  IFNMLWAGDSRYFSPQKFKVKHELVGKF 104
           +   +W+G   Y +P+ FK +   VG+F
Sbjct: 316 LIKQMWSGKFSYVTPRAFKTQ---VGRF 340

Hydrolase that removes conjugated ubiquitin from target proteins and regulates various pathways such as the TGF-beta receptor signaling and NF-kappa-B pathways. Acts as a key regulator of TGF-beta receptor signaling pathway, but the precise mechanism is still unclear: according to a report, acts by promoting deubiquitination of monoubiquitinated R-SMADs (SMAD1, SMAD2 and/or SMAD3), thereby alleviating inhibition of R-SMADs and promoting activation of TGF-beta target genes. According to another reports, regulates the TGF-beta receptor signaling pathway by mediating deubiquitination and stabilization of TGFBR1, leading to an enhanced TGF-beta signal. Able to mediate deubiquitination of monoubiquitinated substrates as well as 'Lys-48'-linked polyubiquitin chains, protecting them against proteasomal degradation. Acts as an associated component of COP9 signalosome complex (CSN) and regulates different pathways via this association: regulates NF-kappa-B by mediating deubiquitination of NFKBIA and deubiquitinates substrates bound to VCP.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 20  PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSK---TSGKLAEEFQL 76
           PGL GL NLGNTC++NS +QCLSNT PL EYF+ + K      +       G++A+ +  
Sbjct: 286 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLND-KYQEELNFDNPLGMRGEIAKSYAE 344

Query: 77  IFNMLWAGDSRYFSPQKFKVKHELVGKF 104
           +   +W+G   Y +P+ FK +   VG+F
Sbjct: 345 LIKQMWSGKFSYVTPRAFKTQ---VGRF 369

Protease that degrades 'Lys-48'-linked polyubiquitin chains. Protects target proteins against proteasomal degradation.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 20  PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSK---TSGKLAEEFQL 76
           PGL GL NLGNTC++NS +QCLSNT PL EYF+ + K      +       G++A+ +  
Sbjct: 286 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLND-KYQEELNFDNPLGMRGEIAKSYAE 344

Query: 77  IFNMLWAGDSRYFSPQKFKVKHELVGKF 104
           +   +W+G   Y +P+ FK +   VG+F
Sbjct: 345 LIKQMWSGKFSYVTPRAFKTQ---VGRF 369

Protease that degrades 'Lys-48'-linked polyubiquitin chains. Protects target proteins against proteasomal degradation. Protects APC and human papillomavirus type 16 protein E6 against degradation via the ubiquitin proteasome pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
301620627	1059	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.078	0.494	2e-16
149408831	1116	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.074	0.483	4e-16
426233324	1009	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.082	0.483	5e-16
115497674	1085	ubiquitin carboxyl-terminal hydrolase 8	0.674	0.076	0.483	6e-16
126277553	1102	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.075	0.483	6e-16
426233322	1086	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.076	0.483	6e-16
327288428	1066	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.077	0.483	6e-16
449471131	1087	PREDICTED: ubiquitin carboxyl-terminal h	0.699	0.079	0.477	7e-16
395503242	1069	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.077	0.483	8e-16
395503240	1100	PREDICTED: ubiquitin carboxyl-terminal h	0.674	0.075	0.483	8e-16

>gi|301620627|ref|XP_002939670.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Xenopus (Silurana) tropicalis]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-----KRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL NT  L EYF   F      RS    +  
Sbjct: 706 LNPVFGGAGPALTGLRNLGNTCYMNSILQCLCNTPHLIEYFNNNFYQAHINRSNLLGH-- 763

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF  I   LW G  +Y SP+ FK+
Sbjct: 764 -KGEVAEEFGCIMRALWTGQYKYISPKDFKI 793

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149408831|ref|XP_001507996.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Ornithorhynchus anatinus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-----KRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF   F      RS    +  
Sbjct: 763 LNPVFGGAGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQEDINRSNLLGH-- 820

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 821 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 850

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426233324|ref|XP_004010667.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Ovis aries]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL NT  L +YF       +  RS    +  
Sbjct: 656 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGH-- 713

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 714 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 743

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|115497674|ref|NP_001069594.1| ubiquitin carboxyl-terminal hydrolase 8 [Bos taurus] gi|113911783|gb|AAI22572.1| Ubiquitin specific peptidase 8 [Bos taurus] gi|296483106|tpg|DAA25221.1| TPA: ubiquitin specific peptidase 8 [Bos taurus]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL NT  L +YF       +  RS    +  
Sbjct: 732 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGH-- 789

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 790 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 819

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126277553|ref|XP_001370028.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Monodelphis domestica]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-----KRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF   F      RS    +  
Sbjct: 749 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQDDINRSNLLGH-- 806

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 807 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 836

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426233322|ref|XP_004010666.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Ovis aries]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL NT  L +YF       +  RS    +  
Sbjct: 733 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGH-- 790

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 791 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 820

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327288428|ref|XP_003228928.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Anolis carolinensis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPL-----REYFVTEFKRSMTAAYSK 65
           +N +F  +GP LTGL+NLGNTCY+NSILQCL N   L     R Y+  +  RS    +  
Sbjct: 713 LNPVFGGMGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNYYQVDINRSNFLGH-- 770

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LWAG  RY SP+ FK+
Sbjct: 771 -KGEVAEEFGIIMKALWAGQYRYISPKDFKM 800

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449471131|ref|XP_002197001.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Taeniopygia guttata]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRS--MTAAYSKTSG 68
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L EYF     ++    + +    G
Sbjct: 734 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAEYFNRNLYQADINRSNFLGHKG 793

Query: 69  KLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
           ++AEEF +I   LWAG  +Y SP+ FK+
Sbjct: 794 EVAEEFGVIMKALWAGQYKYISPKDFKI 821

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395503242|ref|XP_003755979.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Sarcophilus harrisii]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-----KRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF   F      RS    +  
Sbjct: 716 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQDDINRSNLLGH-- 773

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 774 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 803

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395503240|ref|XP_003755978.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Sarcophilus harrisii]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-----KRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF   F      RS    +  
Sbjct: 747 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNFYQDDINRSNLLGH-- 804

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 805 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 834

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
UNIPROTKB|E1BF70	421	USP8 "Ubiquitin carboxyl-termi	0.674	0.197	0.488	1.7e-16
UNIPROTKB|Q0IIM6	1085	USP8 "Ubiquitin carboxyl-termi	0.674	0.076	0.483	9.9e-16
MGI|MGI:1934029	1080	Usp8 "ubiquitin specific pepti	0.674	0.076	0.483	2.6e-15
UNIPROTKB|E1C0G5	1082	E1C0G5 "Ubiquitin carboxyl-ter	0.699	0.079	0.465	2.6e-15
UNIPROTKB|B4DKA8	1012	USP8 "Ubiquitin carboxyl-termi	0.674	0.082	0.472	3.1e-15
UNIPROTKB|F1RYL9	1089	USP8 "Ubiquitin carboxyl-termi	0.699	0.078	0.465	3.4e-15
UNIPROTKB|E2RH35	1116	USP8 "Ubiquitin carboxyl-termi	0.674	0.074	0.472	3.5e-15
UNIPROTKB|P40818	1118	USP8 "Ubiquitin carboxyl-termi	0.674	0.074	0.472	3.5e-15
RGD|1304979	416	Usp8 "ubiquitin specific pepti	0.682	0.201	0.476	4.4e-15
FB|FBgn0038862	896	Ubpy "UBPY ortholog" [Drosophi	0.731	0.100	0.419	6.3e-14

UNIPROTKB|E1BF70 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 42/86 (48%), Positives = 55/86 (63%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKL 70
             +N +F   GP LTGL+NLGNTCY+NSILQCL NT  L +YF    +       ++T  ++
Sbjct:    83 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFN---RNCYQDDINRTCCEV 139

Query:    71 AEEFQLIFNMLWAGDSRYFSPQKFKV 96
             AEEF +I   LW G  RY SP+ FK+
Sbjct:   140 AEEFGIIMKALWTGQYRYISPKDFKI 165

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|Q0IIM6 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 9.9e-16, P = 9.9e-16
 Identities = 44/91 (48%), Positives = 56/91 (61%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
             +N +F   GP LTGL+NLGNTCY+NSILQCL NT  L +YF       +  RS    +  
Sbjct:   732 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGHK- 790

Query:    66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
               G++AEEF +I   LW G  RY SP+ FK+
Sbjct:   791 --GEVAEEFGIIMKALWTGQYRYISPKDFKI 819

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

MGI|MGI:1934029 Usp8 "ubiquitin specific peptidase 8" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 44/91 (48%), Positives = 55/91 (60%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct:   727 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHK- 785

Query:    66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
               G++AEEF +I   LW G  RY SP+ FKV
Sbjct:   786 --GEVAEEFGIIMKALWTGQYRYISPKDFKV 814

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007032 "endosome organization" evidence=ISO;IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IPI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO;IDA;IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0030496 "midbody" evidence=ISO;IDA

GO:0031313 "extrinsic to endosome membrane" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

UNIPROTKB|E1C0G5 E1C0G5 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/88 (46%), Positives = 56/88 (63%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTE-FKRSMTAA-YSKTSG 68
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L EYF    ++  +  + +    G
Sbjct:   729 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAEYFNKNLYQDDINRSNFLGHKG 788

Query:    69 KLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             ++AEEF +I   LW G  +Y SP+ FK+
Sbjct:   789 EVAEEFGVIMKALWTGQYKYISPKDFKI 816

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

UNIPROTKB|B4DKA8 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 43/91 (47%), Positives = 55/91 (60%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct:   659 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHK- 717

Query:    66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
               G++AEEF +I   LW G  RY SP+ FK+
Sbjct:   718 --GEVAEEFGIIMKALWTGQYRYISPKDFKI 746

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1RYL9 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 41/88 (46%), Positives = 55/88 (62%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTE-FKRSMTAA-YSKTSG 68
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF    ++  +  +      G
Sbjct:   736 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQEDINRSNLLGHKG 795

Query:    69 KLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             ++AEEF +I   LW G  RY SP+ FK+
Sbjct:   796 EVAEEFGIIMKALWTGQYRYISPKDFKI 823

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E2RH35 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 43/91 (47%), Positives = 55/91 (60%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct:   763 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHK- 821

Query:    66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
               G++AEEF +I   LW G  RY SP+ FK+
Sbjct:   822 --GEVAEEFGIIMKALWTGQYRYISPKDFKI 850

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|P40818 USP8 "Ubiquitin carboxyl-terminal hydrolase 8" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 43/91 (47%), Positives = 55/91 (60%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct:   765 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHK- 823

Query:    66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
               G++AEEF +I   LW G  RY SP+ FK+
Sbjct:   824 --GEVAEEFGIIMKALWTGQYRYISPKDFKI 852

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0007032 "endosome organization" evidence=IMP

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IMP

GO:0030496 "midbody" evidence=IDA

RGD|1304979 Usp8 "ubiquitin specific peptidase 8" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 41/86 (47%), Positives = 51/86 (59%)

Query:    11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKL 70
             +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF     +           ++
Sbjct:    83 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQD--DINRDVFSEV 140

Query:    71 AEEFQLIFNMLWAGDSRYFSPQKFKV 96
             AEEF +I   LW G  RY SP+ FKV
Sbjct:   141 AEEFGIIMKALWTGQYRYISPKDFKV 166

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007032 "endosome organization" evidence=ISO

GO:0007265 "Ras protein signal transduction" evidence=ISO

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0031313 "extrinsic to endosome membrane" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

GO:0001669 "acrosomal vesicle" evidence=ISO

FB|FBgn0038862 Ubpy "UBPY ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 39/93 (41%), Positives = 60/93 (64%)

Query:    13 IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAE 72
             +I   VG GLTGLKNLGNTCY+NSILQCLSNT  L EY +++  ++  +  +KT+G++ E
Sbjct:   553 VIGQNVGRGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNKTNGQVIE 612

Query:    73 EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFK 105
             E   +   LW G  +  + +  +    +VG+++
Sbjct:   613 EVAALIKELWNGQYKCVASRDLRY---VVGQYQ 642

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0005622 "intracellular" evidence=IDA

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IGI

GO:0016579 "protein deubiquitination" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	1e-17
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	2e-14
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	7e-10
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	2e-09
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	2e-09
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	1e-08
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	1e-07
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	3e-07
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	4e-07
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	7e-07
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	7e-07
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	1e-06
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	1e-06
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	3e-06
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	5e-06
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	1e-05
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	4e-05
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	4e-05
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	2e-04
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	4e-04

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
           G TGL NLGNTCY+NS+LQ L +  PLR+Y +     S       +  +L      +F+
Sbjct: 1  EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQN--SSELINPLGSLNQLPRALADLFH 58

Query: 80 MLWAGDSR--YFSPQKFK 95
           L + +S+    SP+ F 
Sbjct: 59 ALQSPNSKNASVSPKNFL 76

Length = 313

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK-TSGKLAEEFQLIF 78
           G  GL+NLGNTCY+NS LQCL +T  LR+YF++ E++ S+         G +A  +  + 
Sbjct: 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLI 323

Query: 79  NMLWAGDSRYFSPQKFKVKHELVGKF 104
             L+ G+   F+P  FK   + +G F
Sbjct: 324 KQLYDGNLHAFTPSGFK---KTIGSF 346

Length = 823

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 18/32 (56%), Positives = 26/32 (81%)

Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTE 54
           GL+NLGNTC++NS+LQCL++T PL  Y ++ 
Sbjct: 2  AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSR 33

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 17/21 (80%), Positives = 19/21 (90%)

Query: 24 GLKNLGNTCYINSILQCLSNT 44
          GL+NLGNTCY+NSILQCLS  
Sbjct: 1  GLRNLGNTCYMNSILQCLSAD 21

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF------VTEFKRSMTAAYSKTSGKLAEEFQLI 77
          GLKNLG TCY+NS LQ        R+             ++M          + ++ QLI
Sbjct: 1  GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60

Query: 78 FNMLWAGDSRYFSPQKF 94
          F  L  G+     P  F
Sbjct: 61 FAQLQFGNRSVVDPSGF 77

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVT--EFK---------------RSMTAAYSK 65
           GL N+GNTCY+NS+LQ      PLR+  +   E K               R ++ +  +
Sbjct: 2  AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQ 61

Query: 66 TSGKLAEEFQLIFNMLWAGDSRYFSPQK 93
           S +   E + +FN L   ++R  +P K
Sbjct: 62 RSNQFVYELRSLFNDLIHSNTRSVTPSK 89

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 14/20 (70%), Positives = 17/20 (85%)

Query: 24 GLKNLGNTCYINSILQCLSN 43
          GL NLGNTCY+NS+LQ L +
Sbjct: 1  GLNNLGNTCYLNSVLQALFS 20

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF 51
          GL NLGNTC+ N+++Q LS T  LRE  
Sbjct: 1  GLSNLGNTCFFNAVMQNLSQTPALRELL 28

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM-TAAYSKTSGKLAEEFQLIFN 79
          G  GLKN G TCY+NS+LQ L  T   R    +           S          Q +F 
Sbjct: 1  GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPL-----ALQRLFL 55

Query: 80 MLWAGDSRYFSP 91
           L   +S   + 
Sbjct: 56 FLQLSESPVKTT 67

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVT 53
          GL+NLGN+CY+NS+LQ L +    +  +  
Sbjct: 1  GLRNLGNSCYLNSVLQVLFSIPSFQWRYDD 30

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF 51
          GL NLG TC++N ILQ L +   LR YF
Sbjct: 2  GLINLGATCFMNVILQALLHNPLLRNYF 29

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 24  GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSG--KLAEEFQLIFNM 80
           GL+N GNTCY+N  LQCL +   L       F  +++   + +        ++F  ++  
Sbjct: 73  GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYET 132

Query: 81  LWAGDSRYFSPQKFK 95
                 +  SP+ F 
Sbjct: 133 PGCHGPKSISPRNFI 147

Length = 415

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNML 81
          GL NLGNTCY+NS LQCL +   LR+  +  +  +   A +++S  L    + +F+ +
Sbjct: 1  GLTNLGNTCYLNSTLQCLRSVPELRDA-LKNYNPARRGA-NQSSDNLTNALRDLFDTM 56

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREY 50
          GL NLGNTC++NS+LQ L++   L EY
Sbjct: 1  GLVNLGNTCFMNSVLQALASLPSLIEY 27

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 20  PGLTGLKNLGNTCYINSILQCLSNTSPLREYF 51
           PG  GL N+ N  Y N I+Q LS+  P+R +F
Sbjct: 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFF 148

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
              GL NLGNTCY+NS+LQ L        YF   FK  +    S  S    E+ Q  F 
Sbjct: 22 LPFVGLNNLGNTCYLNSVLQVL--------YFCPGFKHGLKHLVSLISSV--EQLQSSFL 71

Query: 80 ML 81
          + 
Sbjct: 72 LN 73

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 19  GPG-LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF 55
            P    GL NLGN+CY++S++Q L   +  +E F    
Sbjct: 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQ 336

Length = 749

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLR 48
          GL NLGNTCY+NS+LQ L      R
Sbjct: 1  GLINLGNTCYMNSVLQALFMAKDFR 25

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 24 GLKNLGNTCYINSILQCL 41
          GL+N GNTCY NS+LQ L
Sbjct: 1  GLENFGNTCYCNSVLQAL 18

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLR 48
           G  GL+N G TCY+NS+LQ L   +  R
Sbjct: 192 GYVGLRNQGATCYMNSLLQSLFFIAKFR 219

Length = 1089

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.85
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.84
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.82
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.82
KOG1865|consensus	545		99.81
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.8
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.79
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.79
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.79
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.76
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.75
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.74
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.72
KOG0944|consensus	763		99.69
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.67
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.67
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.58
KOG1873|consensus	877		99.55
KOG1863|consensus	1093		99.51
KOG1868|consensus	653		99.49
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.48
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.32
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.25
KOG1870|consensus	842		99.2
KOG1867|consensus	492		99.12
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.11
KOG1866|consensus	944		98.91
KOG2026|consensus	442		98.87
KOG1872|consensus	473		98.85
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	98.81
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	98.44
KOG1871|consensus	420		98.25
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	98.25
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	97.56
KOG1864|consensus	587		97.5
KOG1275|consensus	1118		97.32
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	96.8
KOG4598|consensus	1203		96.43
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	94.93
KOG1864|consensus	587		90.13
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	83.42

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.85  E-value=2e-21  Score=151.94  Aligned_cols=94  Identities=24%  Similarity=0.440  Sum_probs=79.4

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCC--CCccChHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGD--SRYFSPQKFK   95 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~--~~~i~P~~~~   95 (123)
                      .+|++||.|+||||||||+||+|+|+|+||++++... .....    ....++.++++.+++++|++.  ..+++|.+|+
T Consensus       116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~----~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl  191 (440)
T cd02669         116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIK----DRKSELVKRLSELIRKIWNPRNFKGHVSPHELL  191 (440)
T ss_pred             cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhcccccccc----CCCcHHHHHHHHHHHHHhccccCCCccCHHHHH
Confidence            5799999999999999999999999999999999876 22111    123589999999999999875  4699999999


Q ss_pred             HHHHhh--CCCCchhhccccccc
Q psy10716         96 VKHELV--GKFKVKVDKRLGKFK  116 (123)
Q Consensus        96 ~~l~~~--~~f~~~~~~~~~~~~  116 (123)
                      .++...  ..|....++|++||+
T Consensus       192 ~~l~~~~~~~f~~~~QqDA~EFl  214 (440)
T cd02669         192 QAVSKVSKKKFSITEQSDPVEFL  214 (440)
T ss_pred             HHHHhhcccccCCcccCCHHHHH
Confidence            999765  358889999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2e-21  Score=153.93  Aligned_cols=96  Identities=33%  Similarity=0.599  Sum_probs=85.5

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC--CChhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy10716         20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS--KTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV   96 (123)
Q Consensus        20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~--~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~   96 (123)
                      .|.+||+|+||||||||.||||.|+++||+||++.. ..+++.. |  +.++.++.+++.|+.+++.++..+++|..|+.
T Consensus       263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~-Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~  341 (823)
T COG5560         263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEE-NPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK  341 (823)
T ss_pred             ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhccc-CccchhhhHHHHHHHHHHHHhCccccccChHHHHH
Confidence            488999999999999999999999999999999999 8888886 4  77899999999999999999988999999999


Q ss_pred             HHHhh-CCCCchhhccccccc
Q psy10716         97 KHELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        97 ~l~~~-~~f~~~~~~~~~~~~  116 (123)
                      .+..+ ..|.--+++|++||.
T Consensus       342 tIG~fn~~fsGy~QQDSqEFi  362 (823)
T COG5560         342 TIGSFNEEFSGYDQQDSQEFI  362 (823)
T ss_pred             HHhhhHHHhcCccchhHHHHH
Confidence            98654 446777778888874

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.82  E-value=1.1e-20  Score=143.62  Aligned_cols=87  Identities=28%  Similarity=0.441  Sum_probs=68.3

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhh-----hcc------cCC-----CChhHHHHHHHHHHHHHHcC
Q psy10716         22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRS-----MTA------AYS-----KTSGKLAEEFQLIFNMLWAG   84 (123)
Q Consensus        22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~-----~~~------~~~-----~~~~~l~~~l~~ll~~l~~~   84 (123)
                      |+||.|+||||||||+||+|+++|+||+++++.. ...     ...      ...     ....+++.+++.||..|+.+
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999999875 211     000      000     11236999999999999999


Q ss_pred             CCCccChHHHHHHHHhhCCCCchhhcccccc
Q psy10716         85 DSRYFSPQKFKVKHELVGKFKVKVDKRLGKF  115 (123)
Q Consensus        85 ~~~~i~P~~~~~~l~~~~~f~~~~~~~~~~~  115 (123)
                      ...+++|..++..+..       .++|++||
T Consensus        81 ~~~~v~P~~~l~~l~~-------~QQDa~Ef  104 (343)
T cd02666          81 NTRSVTPSKELAYLAL-------RQQDVTEC  104 (343)
T ss_pred             CCCccCcHHHHHhccc-------cccchHHH
Confidence            8889999999987543       56666666

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.82  E-value=1.5e-20  Score=140.48  Aligned_cols=91  Identities=24%  Similarity=0.308  Sum_probs=73.1

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC--------------Cc
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--------------RY   88 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--------------~~   88 (123)
                      ||.|+||||||||+||||+++|+||+++++.. ......  ..+..++.++|++++..|+....              .+
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~   78 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDV--VDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG   78 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCc--CCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence            89999999999999999999999999998744 211111  23356899999999999987532              37


Q ss_pred             cChHHHHHHHHh-hCCCCchhhccccccc
Q psy10716         89 FSPQKFKVKHEL-VGKFKVKVDKRLGKFK  116 (123)
Q Consensus        89 i~P~~~~~~l~~-~~~f~~~~~~~~~~~~  116 (123)
                      ++|..|+.++.. .+.|....++|++||+
T Consensus        79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl  107 (311)
T cd02658          79 IKPSMFKALIGKGHPEFSTMRQQDALEFL  107 (311)
T ss_pred             cCcHHHHHHHhccChhhcccccccHHHHH
Confidence            999999999865 3668888899999986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=99.81  E-value=3.7e-20  Score=144.95  Aligned_cols=109  Identities=26%  Similarity=0.322  Sum_probs=91.5

Q ss_pred             eccccccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHc
Q psy10716          5 TFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWA   83 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~   83 (123)
                      +|..+.+.--+.+.....+||.|+|||||+||+||||.++|+|.+|+++.. .+.|.+.    ..|++|+|+..+.....
T Consensus        91 Lfp~e~~~~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~----~~C~lc~~q~hi~~A~~  166 (545)
T KOG1865|consen   91 LFPYEKLPLSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRA----KFCMLCTFQAHITRALH  166 (545)
T ss_pred             ccccceecccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcccc----CeeeehHHHHHHHHHhc
Confidence            444455442344456789999999999999999999999999999999988 6666544    68999999999988888


Q ss_pred             CCCCccChHHHHHHHHhhC-CCCchhhcccccccc
Q psy10716         84 GDSRYFSPQKFKVKHELVG-KFKVKVDKRLGKFKV  117 (123)
Q Consensus        84 ~~~~~i~P~~~~~~l~~~~-~f~~~~~~~~~~~~~  117 (123)
                      ....+++|..+++.++.++ .|....++|++||+.
T Consensus       167 ~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr  201 (545)
T KOG1865|consen  167 NPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLR  201 (545)
T ss_pred             CCCCccChHHHHHhhhhhcccccCCchhhHHHHHH
Confidence            8877999999999998774 599999999999964

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.80  E-value=1e-19  Score=137.06  Aligned_cols=89  Identities=26%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhccc---CC--CChhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA---YS--KTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK   97 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~---~~--~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~   97 (123)
                      ||.|+||||||||+||+|+++|+||++++... .......   .+  ....+++++++.++..||.+...+++|..|..+
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~   80 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA   80 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence            89999999999999999999999999998876 2211100   00  123589999999999999998889999999998


Q ss_pred             HHhhCCCCchhhccccccc
Q psy10716         98 HELVGKFKVKVDKRLGKFK  116 (123)
Q Consensus        98 l~~~~~f~~~~~~~~~~~~  116 (123)
                      ++    +....++|++||+
T Consensus        81 l~----~~~~~QqDa~EFl   95 (324)
T cd02668          81 LG----LDTGQQQDAQEFS   95 (324)
T ss_pred             hC----CCCccccCHHHHH
Confidence            73    5666788888886

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.79  E-value=1.7e-19  Score=134.41  Aligned_cols=90  Identities=28%  Similarity=0.438  Sum_probs=72.5

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh-h
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHEL-V  101 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~~-~  101 (123)
                      ||.|+||||||||+||+|+++|+|++++++.. ...  .. .....++++++++|+..|+.+. .+++|..|+..+.. .
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~--~~-~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~   76 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR--GA-NQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF   76 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc--cc-ccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence            89999999999999999999999999998876 321  00 1234689999999999999876 48999999999854 4


Q ss_pred             CCCC------chhhcccccccc
Q psy10716        102 GKFK------VKVDKRLGKFKV  117 (123)
Q Consensus       102 ~~f~------~~~~~~~~~~~~  117 (123)
                      +.|.      ...++|++||+.
T Consensus        77 ~~f~~~~~~~~~~QqDA~EFl~   98 (305)
T cd02657          77 PQFAEKQNQGGYAQQDAEECWS   98 (305)
T ss_pred             cCcccccCCCCccccCHHHHHH
Confidence            5563      337888888863

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.79  E-value=2e-19  Score=135.08  Aligned_cols=93  Identities=25%  Similarity=0.390  Sum_probs=74.0

Q ss_pred             cccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHh
Q psy10716         23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKFKVKHEL  100 (123)
Q Consensus        23 ~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~-~~~~~~i~P~~~~~~l~~  100 (123)
                      +||.|+||||||||+||+|+|+|+|+++++... ......  .....++.+++++++..|+ .+...+++|..+++++..
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~   78 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLS--CSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK   78 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccccc--CCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence            699999999999999999999999999999875 321111  1234689999999999995 444568999999999854


Q ss_pred             h-CCCCchhhcccccccc
Q psy10716        101 V-GKFKVKVDKRLGKFKV  117 (123)
Q Consensus       101 ~-~~f~~~~~~~~~~~~~  117 (123)
                      . ..|....++|++||+.
T Consensus        79 ~~~~f~~~~QqDa~Efl~   96 (328)
T cd02660          79 HSRNLAGYSQQDAHEFFQ   96 (328)
T ss_pred             hchhhcccccccHHHHHH
Confidence            4 3577777888998864

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.79  E-value=2.8e-19  Score=132.37  Aligned_cols=92  Identities=25%  Similarity=0.446  Sum_probs=76.4

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh
Q psy10716         22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHEL  100 (123)
Q Consensus        22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~~  100 (123)
                      ++||.|+||||||||+||+|+++|+|++++++.. .....    ....++.++++.++..++.+....++|..|.+++..
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~   76 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ   76 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence            5899999999999999999999999999998765 32222    123589999999999999888889999999998865


Q ss_pred             h-CCCCchhhcccccccc
Q psy10716        101 V-GKFKVKVDKRLGKFKV  117 (123)
Q Consensus       101 ~-~~f~~~~~~~~~~~~~  117 (123)
                      . +.|....++|+.||+.
T Consensus        77 ~~~~f~~~~qqDa~Efl~   94 (304)
T cd02661          77 ISKHFRIGRQEDAHEFLR   94 (304)
T ss_pred             HHHhhcCcchhhHHHHHH
Confidence            4 5588778889988863

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.76  E-value=1.8e-18  Score=124.43  Aligned_cols=96  Identities=29%  Similarity=0.552  Sum_probs=76.1

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhccc-CCCChhHHHHHHHHHHHHHHcC--CCCccChHHHHHH
Q psy10716         22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAG--DSRYFSPQKFKVK   97 (123)
Q Consensus        22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~-~~~~~~~l~~~l~~ll~~l~~~--~~~~i~P~~~~~~   97 (123)
                      ++||.|.||||||||+||+|+++|+|++++++.. ....... ......++.++++.++..||..  ....++|..+..+
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~   80 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA   80 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence            5899999999999999999999999999999873 1111111 0233457999999999999988  5679999999999


Q ss_pred             HHhh-CCCCchhhcccccccc
Q psy10716         98 HELV-GKFKVKVDKRLGKFKV  117 (123)
Q Consensus        98 l~~~-~~f~~~~~~~~~~~~~  117 (123)
                      +... ..|....++|+.||+.
T Consensus        81 l~~~~~~~~~~~qqDa~E~l~  101 (269)
T PF00443_consen   81 LSSINPSFSNGEQQDAHEFLS  101 (269)
T ss_dssp             HHHHCGGGGSSSTEEHHHHHH
T ss_pred             ccccccccccccccchhhhhc
Confidence            9764 4577888899999863

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.75  E-value=2e-18  Score=130.37  Aligned_cols=87  Identities=28%  Similarity=0.361  Sum_probs=70.2

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHH-HHHHHHhh
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQK-FKVKHELV  101 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~-~~~~l~~~  101 (123)
                      ||.|+||||||||+||+|+++|+||+++++.. ...      ....++..+++.++..|..+...++.|.. ++.+.. .
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-~   73 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-P   73 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc-c
Confidence            89999999999999999999999999999876 211      11246888999999888877667788876 666543 4


Q ss_pred             CCCCchhhcccccccc
Q psy10716        102 GKFKVKVDKRLGKFKV  117 (123)
Q Consensus       102 ~~f~~~~~~~~~~~~~  117 (123)
                      ..|....++|++||+.
T Consensus        74 ~~f~~~~QqDa~EFl~   89 (327)
T cd02664          74 PWFTPGSQQDCSEYLR   89 (327)
T ss_pred             cccCCCCcCCHHHHHH
Confidence            5688888999999874

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.74  E-value=3.8e-18  Score=129.35  Aligned_cols=91  Identities=20%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH   98 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l   98 (123)
                      ..+++||.|+||||||||+||+|+|+|+||+.+++.....      . ...-.+.+..++..++.......+|..|+.++
T Consensus        21 ~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~------~-~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l   93 (332)
T cd02671          21 LLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI------S-SVEQLQSSFLLNPEKYNDELANQAPRRLLNAL   93 (332)
T ss_pred             CCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc------C-cHHHHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            5799999999999999999999999999999987653000      0 11122233344566666655577899999999


Q ss_pred             Hhh-CCCCchhhccccccc
Q psy10716         99 ELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        99 ~~~-~~f~~~~~~~~~~~~  116 (123)
                      +.. +.|....++|++||+
T Consensus        94 ~~~~~~f~~~~QQDA~EFl  112 (332)
T cd02671          94 REVNPMYEGYLQHDAQEVL  112 (332)
T ss_pred             HHhccccCCccccCHHHHH
Confidence            764 568888999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.72  E-value=6.8e-18  Score=127.04  Aligned_cols=91  Identities=23%  Similarity=0.293  Sum_probs=68.6

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy10716         21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHE   99 (123)
Q Consensus        21 ~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~   99 (123)
                      |++||.|+||||||||+||+|+++|+|++++++.. ....     ....++.++++.++..|+.+....+.|..+.....
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~-----~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~   75 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDD-----DDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS   75 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccC-----cccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence            68999999999999999999999999999999863 1111     12357999999999999988766666655541111


Q ss_pred             h-hCCCCchhhccccccc
Q psy10716        100 L-VGKFKVKVDKRLGKFK  116 (123)
Q Consensus       100 ~-~~~f~~~~~~~~~~~~  116 (123)
                      . ...+....++|++||+
T Consensus        76 ~~~~~~~~~~QqDa~Efl   93 (334)
T cd02659          76 FGWDSLNTFEQHDVQEFF   93 (334)
T ss_pred             CCCCCCCcccchhHHHHH
Confidence            1 2346677788888885

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=99.69  E-value=3.4e-17  Score=130.54  Aligned_cols=110  Identities=22%  Similarity=0.388  Sum_probs=87.4

Q ss_pred             eeccccccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHc
Q psy10716          4 ITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA   83 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~   83 (123)
                      +.+.+..++|.+   ++|++||+|+||+||||||+|+|++++.|....+.......... ..+..++.+++.+|++.|.+
T Consensus       292 ~~esg~~l~p~~---gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~-~~P~ndf~cQ~~Kl~~gm~s  367 (763)
T KOG0944|consen  292 LEESGAPLEPLF---GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYP-KDPTNDFNCQLAKLLHGMLS  367 (763)
T ss_pred             eccCCCcccccc---CCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCC-CCcchhHHHHHHHHHHHhhc
Confidence            455666778877   89999999999999999999999999999998877631111111 24567999999999999987


Q ss_pred             CCCC----------ccChHHHHHHHHh-hCCCCchhhcccccccc
Q psy10716         84 GDSR----------YFSPQKFKVKHEL-VGKFKVKVDKRLGKFKV  117 (123)
Q Consensus        84 ~~~~----------~i~P~~~~~~l~~-~~~f~~~~~~~~~~~~~  117 (123)
                      +...          .|+|..|+..+.. -+.|....+||++||++
T Consensus       368 gkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFll  412 (763)
T KOG0944|consen  368 GKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLL  412 (763)
T ss_pred             CcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHH
Confidence            7643          5899999999854 56688888889999864

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.67  E-value=6.3e-17  Score=120.75  Aligned_cols=70  Identities=30%  Similarity=0.446  Sum_probs=60.9

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCC--CccChHHHHHHHHhh
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFKVKHELV  101 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--~~i~P~~~~~~l~~~  101 (123)
                      ||.|+||||||||+||+|+|                  .      +++++|+.+|..||.+..  .+++|..|++++...
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~------------------~------~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~   56 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF------------------E------NLLTCLKDLFESISEQKKRTGVISPKKFITRLKRE   56 (300)
T ss_pred             CccCCCcceehhHHHHHhhh------------------H------HHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhh
Confidence            89999999999999999987                  1      688899999999998753  379999999999654


Q ss_pred             -CCCCchhhcccccccc
Q psy10716        102 -GKFKVKVDKRLGKFKV  117 (123)
Q Consensus       102 -~~f~~~~~~~~~~~~~  117 (123)
                       +.|....++|++||+.
T Consensus        57 ~~~f~~~~QqDA~EFl~   73 (300)
T cd02663          57 NELFDNYMHQDAHEFLN   73 (300)
T ss_pred             cCCCCCCccccHHHHHH
Confidence             5688999999999973

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=9.3e-17  Score=119.07  Aligned_cols=99  Identities=22%  Similarity=0.389  Sum_probs=77.0

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccC-CCChh-HHHHHHHHHHHHHHcCCCCccChHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAY-SKTSG-KLAEEFQLIFNMLWAGDSRYFSPQKFK   95 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~-~~~~~-~l~~~l~~ll~~l~~~~~~~i~P~~~~   95 (123)
                      ...+.||.|.|||||||++||||+.+..+...+.... ...++.+. .+..+ .....|.-+...+-......|+|..|+
T Consensus        68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~  147 (415)
T COG5533          68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI  147 (415)
T ss_pred             ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence            3578999999999999999999999999999665555 55555541 23344 455566666677776666799999999


Q ss_pred             HHHHhh-CCCCchhhcccccccc
Q psy10716         96 VKHELV-GKFKVKVDKRLGKFKV  117 (123)
Q Consensus        96 ~~l~~~-~~f~~~~~~~~~~~~~  117 (123)
                      ..+.-. .-|...+++|++||.+
T Consensus       148 ~i~~~~n~~fs~dmQqD~qEFl~  170 (415)
T COG5533         148 DILSGRNKLFSGDMQQDSQEFLI  170 (415)
T ss_pred             HHHccccccccccchhhHHHHHH
Confidence            999654 5599999999999864

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.58  E-value=1.1e-15  Score=113.07  Aligned_cols=30  Identities=53%  Similarity=0.933  Sum_probs=28.8

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHh
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVT   53 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~   53 (123)
                      ||.|+||||||||+||+|+|+|+||+++++
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~   30 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE   30 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHH
Confidence            899999999999999999999999999865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1873|consensus

Probab=99.55  E-value=8.4e-15  Score=118.15  Aligned_cols=99  Identities=20%  Similarity=0.304  Sum_probs=79.6

Q ss_pred             cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhh---hcccC----------CCChhHHHHHHHHHHHHHH
Q psy10716         17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRS---MTAAY----------SKTSGKLAEEFQLIFNMLW   82 (123)
Q Consensus        17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~---~~~~~----------~~~~~~l~~~l~~ll~~l~   82 (123)
                      +.....+||.|+|||||+|||+|+|..+|.||+.|.... ...   +..+.          -....+++.+|+. +..|.
T Consensus       200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~  278 (877)
T KOG1873|consen  200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMS  278 (877)
T ss_pred             cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhh
Confidence            445678999999999999999999999999999998876 321   11110          1344688899998 77788


Q ss_pred             cCCCCccChHHHHHHH-HhhCCCCchhhccccccc
Q psy10716         83 AGDSRYFSPQKFKVKH-ELVGKFKVKVDKRLGKFK  116 (123)
Q Consensus        83 ~~~~~~i~P~~~~~~l-~~~~~f~~~~~~~~~~~~  116 (123)
                      .+...+++|..|+..+ .+.++|.-.+++|++|.+
T Consensus       279 e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELL  313 (877)
T KOG1873|consen  279 ETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELL  313 (877)
T ss_pred             hccCCccCHHHHHHHHHHhCCcccccccccHHHHH
Confidence            8888899999999998 567889999999999864

>KOG1863|consensus

Probab=99.51  E-value=1.9e-14  Score=122.73  Aligned_cols=101  Identities=22%  Similarity=0.274  Sum_probs=77.8

Q ss_pred             cCCCCc-cccccCCchhhHHHHHHHHhCCHHHHHHHHhcch-hhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHH
Q psy10716         17 TVGPGL-TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFK-RSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKF   94 (123)
Q Consensus        17 ~~~~~~-~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~-~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~   94 (123)
                      +...|. +||.|+||||||||+||+|+.++.||+.+++.+. ...    .++...+..+++.+|..|+.++.++++|..+
T Consensus       164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~----~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~  239 (1093)
T KOG1863|consen  164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGH----EDPRRSIPLALQRLFYELQMSKRKYVDTSEL  239 (1093)
T ss_pred             hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCc----ccccchHHHHHHHHHHHHhhcCCCCcCchhh
Confidence            344555 9999999999999999999999999999999872 111    2334579999999999999999889999999


Q ss_pred             HHHHHhhC--CCCchhhcccccccccccc
Q psy10716         95 KVKHELVG--KFKVKVDKRLGKFKVKHKE  121 (123)
Q Consensus        95 ~~~l~~~~--~f~~~~~~~~~~~~~~~~~  121 (123)
                      ...+...+  .|.+++-++....++|-+|
T Consensus       240 ~~~~~~~~~~~~~QqDvqEf~~~l~d~LE  268 (1093)
T KOG1863|consen  240 TKSLGWDSNDSFEQQDVQEFLTKLLDWLE  268 (1093)
T ss_pred             hhhhhcccccHHhhhhHHHHHHHHHHHHH
Confidence            99986554  3444444444444555444

>KOG1868|consensus

Probab=99.49  E-value=3.2e-14  Score=115.16  Aligned_cols=100  Identities=28%  Similarity=0.433  Sum_probs=82.1

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcC-CCCccChHHHH
Q psy10716         18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAG-DSRYFSPQKFK   95 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~-~~~~i~P~~~~   95 (123)
                      ...+.+||.|+|||||||++||||+.++.||..+++.. ...++.........+..++..++..+|.. ...++.|..|.
T Consensus       297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~  376 (653)
T KOG1868|consen  297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFI  376 (653)
T ss_pred             cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHH
Confidence            35689999999999999999999999999998888887 66555221234458889999999998877 44589999999


Q ss_pred             HHHHh-hCCCCchhhcccccccc
Q psy10716         96 VKHEL-VGKFKVKVDKRLGKFKV  117 (123)
Q Consensus        96 ~~l~~-~~~f~~~~~~~~~~~~~  117 (123)
                      ..+.. ...|....+++++||.+
T Consensus       377 ~~~~~y~~~~~~~~Qqd~qEfl~  399 (653)
T KOG1868|consen  377 RVLKRYSPNFSGYSQQDAQEFLI  399 (653)
T ss_pred             HHHhhcccccccccccchHHHHH
Confidence            99965 56688867899999987

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.6e-14  Score=116.99  Aligned_cols=98  Identities=21%  Similarity=0.275  Sum_probs=79.3

Q ss_pred             cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy10716         17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFK   95 (123)
Q Consensus        17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~   95 (123)
                      ++..|++||+|.|.||||||+||+|+.+..||+.++..+ ...-      ...++..+++++|..|+.++ .+++..+|.
T Consensus       188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~------grdSValaLQr~Fynlq~~~-~PvdTtelt  260 (1089)
T COG5077         188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR------GRDSVALALQRLFYNLQTGE-EPVDTTELT  260 (1089)
T ss_pred             ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC------ccchHHHHHHHHHHHHhccC-CCcchHHhh
Confidence            446899999999999999999999999999999999987 2221      23579999999999999887 699999998


Q ss_pred             HHHHh--hCCCCchhhcccccccccccc
Q psy10716         96 VKHEL--VGKFKVKVDKRLGKFKVKHKE  121 (123)
Q Consensus        96 ~~l~~--~~~f~~~~~~~~~~~~~~~~~  121 (123)
                      +....  ...|.+.+-++..+-+.|.+|
T Consensus       261 rsfgWds~dsf~QHDiqEfnrVl~DnLE  288 (1089)
T COG5077         261 RSFGWDSDDSFMQHDIQEFNRVLQDNLE  288 (1089)
T ss_pred             hhcCcccchHHHHHhHHHHHHHHHHHHH
Confidence            88743  345666666666666666665

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.32  E-value=1e-12  Score=95.40  Aligned_cols=32  Identities=50%  Similarity=0.850  Sum_probs=30.6

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716         24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF   55 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~   55 (123)
                      ||+|+||||||||+||+|+|+|+||+++.+..
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~   32 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL   32 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH
Confidence            89999999999999999999999999998865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=5.2e-12  Score=99.15  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc---hhhhcccCCCChhHHHHHHHHHHHHHHcCCCC----ccChH
Q psy10716         20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF---KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR----YFSPQ   92 (123)
Q Consensus        20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~---~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~----~i~P~   92 (123)
                      .+++||.|+||+||+||++|.|+....+...+....   ...+..    +..++.|++.+|+..|......    .++|.
T Consensus       301 s~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~----P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~  376 (749)
T COG5207         301 SPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKN----PLECLFCQLMKLLSKMKETPDNEYVNGISPL  376 (749)
T ss_pred             CCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecC----CchhHHHHHHHHHhhccCCCCccccCCcChh
Confidence            349999999999999999999999888776654444   223322    2578999999999999876633    78999


Q ss_pred             HHHHHHHh-hCCCCchhhcccccccc
Q psy10716         93 KFKVKHEL-VGKFKVKVDKRLGKFKV  117 (123)
Q Consensus        93 ~~~~~l~~-~~~f~~~~~~~~~~~~~  117 (123)
                      .|+..+.. -+-|.-..++|++||++
T Consensus       377 ~fk~~igq~h~eFg~~~QQDA~EFLl  402 (749)
T COG5207         377 DFKMLIGQDHPEFGKFAQQDAHEFLL  402 (749)
T ss_pred             hHHHHHcCCchhhhhhhhhhHHHHHH
Confidence            99999854 45577777788888864

>KOG1870|consensus

Probab=99.20  E-value=1.4e-11  Score=103.07  Aligned_cols=101  Identities=33%  Similarity=0.601  Sum_probs=82.9

Q ss_pred             ccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccC-CCChhHHHHHHHHHHHHHHcCCCCccChHH
Q psy10716         16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAY-SKTSGKLAEEFQLIFNMLWAGDSRYFSPQK   93 (123)
Q Consensus        16 ~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~-~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~   93 (123)
                      ....+|.+||.|+|||||||+.+|||.+.+.++++++... ..+++... .+....+..++..+...+|......+.|..
T Consensus       240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~  319 (842)
T KOG1870|consen  240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS  319 (842)
T ss_pred             CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence            3446799999999999999999999999999999999988 55566651 266678999999999999999977899999


Q ss_pred             HHHHHHhhC-CCCchhhccccccc
Q psy10716         94 FKVKHELVG-KFKVKVDKRLGKFK  116 (123)
Q Consensus        94 ~~~~l~~~~-~f~~~~~~~~~~~~  116 (123)
                      +...+.... .|.-..++|+.||.
T Consensus       320 ~~~~~~~~a~~~~g~~q~d~~E~l  343 (842)
T KOG1870|consen  320 FRTSLASFASEFSGYGQQDSQELL  343 (842)
T ss_pred             hhhhhhhccccccCcccccchhhh
Confidence            999986543 36666666665553

>KOG1867|consensus

Probab=99.12  E-value=6.9e-11  Score=93.76  Aligned_cols=97  Identities=26%  Similarity=0.406  Sum_probs=81.6

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCC-CCccChHHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGD-SRYFSPQKFKV   96 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~-~~~i~P~~~~~   96 (123)
                      ..++.|+.|+|+||+||++||+|.+.+..+...+... ..+  .. ...+.++.+++.++++.+|++. ..+++|..+..
T Consensus       158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~--~~-~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~  234 (492)
T KOG1867|consen  158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKE--PS-SSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLN  234 (492)
T ss_pred             eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccC--CC-CCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHH
Confidence            5689999999999999999999999999888887776 311  11 2235799999999999999999 88999999999


Q ss_pred             HHHhh-CCCCchhhccccccccc
Q psy10716         97 KHELV-GKFKVKVDKRLGKFKVK  118 (123)
Q Consensus        97 ~l~~~-~~f~~~~~~~~~~~~~~  118 (123)
                      ..... +.++...++|++||++.
T Consensus       235 ~~~k~~~~~~g~~Qqda~eF~~~  257 (492)
T KOG1867|consen  235 LVWKHSPNLAGYEQQDAHEFLIA  257 (492)
T ss_pred             HHHHhCcccccccccchHHHHHH
Confidence            99764 66888999999999864

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.11  E-value=1e-10  Score=87.15  Aligned_cols=91  Identities=22%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             cccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHhh
Q psy10716         23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKFKVKHELV  101 (123)
Q Consensus        23 ~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~-~~~~~~i~P~~~~~~l~~~  101 (123)
                      .||.|.+++||+||+||+|+++|++|+.++...  ++..     ..|+.+++.-||+.|. .+......+..|.++++..
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~~-----e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~   73 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECPK-----EFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWI   73 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCCc-----cccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcC
Confidence            599999999999999999999999999998875  2333     3799999999999999 8887788999999998655


Q ss_pred             CC----CCchhhccccccccccc
Q psy10716        102 GK----FKVKVDKRLGKFKVKHK  120 (123)
Q Consensus       102 ~~----f~~~~~~~~~~~~~~~~  120 (123)
                      +.    ...++.+...+|.++++
T Consensus        74 ~~a~~l~~~~~iq~~~~Fll~~l   96 (295)
T PF13423_consen   74 PEAAALGLQQDIQSLNRFLLEQL   96 (295)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHH
Confidence            32    33566666777776654

>KOG1866|consensus

Probab=98.91  E-value=1.1e-09  Score=89.13  Aligned_cols=102  Identities=25%  Similarity=0.410  Sum_probs=80.4

Q ss_pred             cccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccCh
Q psy10716         13 IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSP   91 (123)
Q Consensus        13 ~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P   91 (123)
                      |.-++.+.+.+||+|-|+|||||+++|-+.++|.+|+.++... ..+...-  .-...+.++++.+|..+..++-.++.|
T Consensus        86 pVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~--s~~e~vl~~lQ~iF~hL~~s~lQyyVP  163 (944)
T KOG1866|consen   86 PVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDM--SGDEKVLRHLQVIFGHLAASQLQYYVP  163 (944)
T ss_pred             CcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhh--cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            3334666799999999999999999999999999999887766 3111100  011239999999999999999899999


Q ss_pred             HHHHHHHHhhC-CCCchhhccccccc
Q psy10716         92 QKFKVKHELVG-KFKVKVDKRLGKFK  116 (123)
Q Consensus        92 ~~~~~~l~~~~-~f~~~~~~~~~~~~  116 (123)
                      ..|+..++..+ ..+..-++|+=||+
T Consensus       164 eg~Wk~Fr~~~~pln~reqhDA~eFf  189 (944)
T KOG1866|consen  164 EGFWKQFRLWGEPLNLREQHDALEFF  189 (944)
T ss_pred             hhHHHHhhccCCccchHhhhhHHHHH
Confidence            99999998764 37777778877775

>KOG2026|consensus

Probab=98.87  E-value=2.1e-09  Score=81.94  Aligned_cols=91  Identities=27%  Similarity=0.459  Sum_probs=77.1

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC--CccChHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFK   95 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--~~i~P~~~~   95 (123)
                      -+|.+||.|+-++-|.|+++|.|.+..++|++++... ..       +....+++.|..+++++|.++.  ..+||.++.
T Consensus       131 LpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~-------d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~l  203 (442)
T KOG2026|consen  131 LPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF-------DNLTELVQRLGELIRKLWNPRNFKGHVSPHEFL  203 (442)
T ss_pred             eeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc-------chhHHHHHHHHHHHHHhcChhhhcccCCHHHHH
Confidence            5799999999999999999999999999999998874 22       2346899999999999998884  389999999


Q ss_pred             HHHHhh--CCCCchhhccccccc
Q psy10716         96 VKHELV--GKFKVKVDKRLGKFK  116 (123)
Q Consensus        96 ~~l~~~--~~f~~~~~~~~~~~~  116 (123)
                      +++...  .+|.+.-+.|.-+|.
T Consensus       204 qaV~~~s~k~f~i~~q~DpveFl  226 (442)
T KOG2026|consen  204 QAVMKLSKKRFRIGQQSDPVEFL  226 (442)
T ss_pred             HHHHHHhhhheecCCCCCHHHHH
Confidence            999665  457777777777764

>KOG1872|consensus

Probab=98.85  E-value=1.6e-09  Score=84.30  Aligned_cols=77  Identities=27%  Similarity=0.386  Sum_probs=61.5

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy10716         20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH   98 (123)
Q Consensus        20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l   98 (123)
                      +-++|+.|+|||||||+.+|||-..++++..+.... .++.+.. -.....+..+++.+|+.|.+.  .++.|..+...+
T Consensus       103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t-~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl  179 (473)
T KOG1872|consen  103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDT-WERRRRISIETRTCFRPLCEK--GAVAPINLLQTL  179 (473)
T ss_pred             cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCch-hhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHH
Confidence            456799999999999999999999999998887665 3332221 122467899999999999988  699999998885


Q ss_pred             H
Q psy10716         99 E   99 (123)
Q Consensus        99 ~   99 (123)
                      .
T Consensus       180 ~  180 (473)
T KOG1872|consen  180 S  180 (473)
T ss_pred             H
Confidence            3

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=98.81  E-value=5.9e-09  Score=77.19  Aligned_cols=54  Identities=26%  Similarity=0.338  Sum_probs=42.5

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIF   78 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll   78 (123)
                      ..+.+||.|.|.|||+||+||+|+++|+||+++ .....++..     ..|+.+++..||
T Consensus        12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~~~~~~~~~-----~~~l~~el~~lf   65 (268)
T cd02672          12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-AIILVACPK-----ESCLLCELGYLF   65 (268)
T ss_pred             cccccccccCCccchHHHHHHHHHhcHHHHHHH-HhhcccCCc-----CccHHHHHHHHH
Confidence            457999999999999999999999999999983 222222222     268888888877

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=98.44  E-value=7.5e-08  Score=68.76  Aligned_cols=20  Identities=85%  Similarity=1.496  Sum_probs=19.0

Q ss_pred             ccccCCchhhHHHHHHHHhC
Q psy10716         24 GLKNLGNTCYINSILQCLSN   43 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~   43 (123)
                      ||.|.|||||+||+||+|.+
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~   20 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA   20 (230)
T ss_pred             CccccCcchhhhHHHHHHHH
Confidence            89999999999999999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1871|consensus

Probab=98.25  E-value=7.5e-07  Score=68.33  Aligned_cols=65  Identities=25%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             cccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHH
Q psy10716         15 FWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLW   82 (123)
Q Consensus        15 ~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~   82 (123)
                      ..+++..++|+.|-||.|||||+||+|..+++|-+.+.... .....+   ....+++.++..+..+..
T Consensus        21 ~~p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~---~~stp~lda~~~~~~df~   86 (420)
T KOG1871|consen   21 FEPVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK---EGSTPLLDASRPASSDFN   86 (420)
T ss_pred             cCccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee---cccchhHHHHHHHHhhcc
Confidence            44556789999999999999999999999999999886655 111111   224567777777666665

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=98.25  E-value=4.1e-07  Score=64.16  Aligned_cols=20  Identities=70%  Similarity=1.208  Sum_probs=19.5

Q ss_pred             ccccCCchhhHHHHHHHHhC
Q psy10716         24 GLKNLGNTCYINSILQCLSN   43 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~   43 (123)
                      ||.|.|||||+||+||+|++
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~   20 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS   20 (255)
T ss_pred             CccccCcchHHhHHHHHHHH
Confidence            89999999999999999998

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=97.56  E-value=6.4e-05  Score=54.61  Aligned_cols=22  Identities=45%  Similarity=0.937  Sum_probs=20.4

Q ss_pred             ccccCCchhhHHHHHHHHhCCH
Q psy10716         24 GLKNLGNTCYINSILQCLSNTS   45 (123)
Q Consensus        24 GL~NlGNTCymNs~LQ~L~~~~   45 (123)
                      ||.|.||||++|++.|.|++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~Q   22 (228)
T cd02665           1 GLKNVGNTCWFSAVIQSLFSQQ   22 (228)
T ss_pred             CccccCcchhHHHHHHHHHHHH
Confidence            8999999999999999999854

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1864|consensus

Probab=97.50  E-value=7.4e-05  Score=60.90  Aligned_cols=36  Identities=36%  Similarity=0.418  Sum_probs=30.5

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF   55 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~   55 (123)
                      ..... |+|.|||||.||++|++..+|+|+.-+....
T Consensus        29 ~~~~~-l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~   64 (587)
T KOG1864|consen   29 LFKFR-LVNTGNSCYYNSTLQALSSCPPFVSRVEQLP   64 (587)
T ss_pred             ccceE-EeecCCchhhhhHHHHHhhccHHHHHHHHHH
Confidence            33444 9999999999999999999999998776654

>KOG1275|consensus

Probab=97.32  E-value=0.00079  Score=56.86  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH   98 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l   98 (123)
                      ..-++||.-.+-.-|-|++||.|+.+|++|..+++..   |..     ..|++|++.-||..|..+...+-....|.+++
T Consensus       496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~---C~~-----e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf  567 (1118)
T KOG1275|consen  496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI---CTK-----EFCLLCELGFLFTMLDSSTGDPCQANNFLRAF  567 (1118)
T ss_pred             cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc---cch-----hHHHHHHHHHHHHHHhhhcCCccchhHHHHHH
Confidence            3467788877888899999999999999999999874   222     37999999999999998888888889999988


Q ss_pred             Hhh
Q psy10716         99 ELV  101 (123)
Q Consensus        99 ~~~  101 (123)
                      +..
T Consensus       568 ~t~  570 (1118)
T KOG1275|consen  568 RTN  570 (1118)
T ss_pred             hhC
Confidence            643

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=96.80  E-value=0.001  Score=48.72  Aligned_cols=31  Identities=39%  Similarity=0.622  Sum_probs=25.8

Q ss_pred             cccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716         25 LKNLGNTCYINSILQCLSNTSPLREYFVTEF   55 (123)
Q Consensus        25 L~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~   55 (123)
                      |.|.||.||+|+.+|+|.++......|....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~   32 (245)
T cd02673           2 LVNTGNSCYFNSTMQALSSIGKINTEFDNDD   32 (245)
T ss_pred             ceecCCeeeehhHHHHHHHHhhhhhhcCCCc
Confidence            7899999999999999998877766665544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=96.43  E-value=0.002  Score=53.51  Aligned_cols=37  Identities=16%  Similarity=-0.006  Sum_probs=34.3

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF   55 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~   55 (123)
                      +.+++||.|-..|||+|+.+|+|+.+|.++..++.-.
T Consensus        84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~  120 (1203)
T KOG4598|consen   84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE  120 (1203)
T ss_pred             CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC
Confidence            6789999999999999999999999999999997644

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.93  E-value=0.016  Score=40.63  Aligned_cols=24  Identities=33%  Similarity=0.627  Sum_probs=16.4

Q ss_pred             CCccccccCCchhhHHHHHHHHhC
Q psy10716         20 PGLTGLKNLGNTCYINSILQCLSN   43 (123)
Q Consensus        20 ~~~~GL~NlGNTCymNs~LQ~L~~   43 (123)
                      ..+.|+-|.+|+|++||++|.+-.
T Consensus        31 ~eft~~PN~~dnCWlNaL~QL~~~   54 (193)
T PF05408_consen   31 MEFTGLPNNHDNCWLNALLQLFRY   54 (193)
T ss_dssp             -EEE----SSSTHHHHHHHHHHHH
T ss_pred             eEEecCCCCCCChHHHHHHHHHHH
Confidence            356799999999999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>KOG1864|consensus

Probab=90.13  E-value=0.3  Score=40.27  Aligned_cols=97  Identities=19%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             CCCCccccccCCchhhHH--HHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCC--CccChHH
Q psy10716         18 VGPGLTGLKNLGNTCYIN--SILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQK   93 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymN--s~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--~~i~P~~   93 (123)
                      .+...-|..|.+++|+-|  ++.|.+.....+++..+...  ...+..-.....+...+..+++..-....  ..+.|..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~  305 (587)
T KOG1864|consen  228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYL--TSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR  305 (587)
T ss_pred             ccccccCccccCccccccchhhHHHHHhhhhhcccccchh--hcccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence            456788999999999999  99999998888886554433  00000001122344444444443332222  2789999


Q ss_pred             HHHHHHhh-CCCCchhhccccccc
Q psy10716         94 FKVKHELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        94 ~~~~l~~~-~~f~~~~~~~~~~~~  116 (123)
                      +...+... ..|+..+++|++||+
T Consensus       306 ~~~~~~~~~~~f~~~~qQda~eF~  329 (587)
T KOG1864|consen  306 FISDLIKENELFTNGMQQDAHEFL  329 (587)
T ss_pred             hhhhhhhcCCccCchhhccHHHHh
Confidence            99998775 459999999999986

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=83.42  E-value=0.64  Score=34.09  Aligned_cols=20  Identities=30%  Similarity=0.699  Sum_probs=18.5

Q ss_pred             ccccCCc-hhhHHHHHHHHhC
Q psy10716         24 GLKNLGN-TCYINSILQCLSN   43 (123)
Q Consensus        24 GL~NlGN-TCymNs~LQ~L~~   43 (123)
                      |..|.+| +||+-|+|=+++.
T Consensus         1 g~~~~~~~~cy~d~~~~~~f~   21 (241)
T cd02670           1 GAQNHCNVSCYLDALLFAMFA   21 (241)
T ss_pred             CCccccCceeehHHHHHHHHH
Confidence            7899999 9999999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		9e-18
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		3e-17
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		2e-13
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		6e-12
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		9e-12
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		9e-12
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		1e-10
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		2e-10
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		2e-10
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		6e-10
3ihp_A	854	Covalent Ubiquitin-Usp5 Complex Length = 854		6e-06
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		1e-04
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		6e-04
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		7e-04

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF       +  RS    +  
Sbjct: 51  LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH-- 108
Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 109 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 138

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 11  INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
           +N +F   GP LTGL+NLGNTCY NSILQCL N   L +YF       +  RS    +  
Sbjct: 51  LNPVFGGSGPALTGLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH-- 108
Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
             G++AEEF +I   LW G  RY SP+ FK+
Sbjct: 109 -KGEVAEEFGIIXKALWTGQYRYISPKDFKI 138

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 18  VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYS-KTSGKLAEEFQ 75
           + PGL GL NLGNT ++NS LQCLSNT+PL +YF+  E++  +         G++AE + 
Sbjct: 4   IQPGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYA 63
Query: 76  LIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
            +   +W+G   + +P+ FK +   VG+F
Sbjct: 64  ELIKQMWSGRDAHVAPRMFKTQ---VGRF 89

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
           GL GL+NLGNTC++NSILQCLSNT  LR+Y +           S     L EEF  +   
Sbjct: 34  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 93
Query: 81  LWAGD-SRYFSPQKFKVK 97
           +W    +   SP +FK +
Sbjct: 94  IWTSSPNDVVSPSEFKTQ 111

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
          GL GL+NLGNTC++NSILQCLSNT  LR+Y +           S     L EEF  +   
Sbjct: 8  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 67
Query: 81 LW-AGDSRYFSPQKFKVK 97
          +W +  +   SP +FK +
Sbjct: 68 IWTSSPNDVVSPSEFKTQ 85

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
           GL GL+NLGNTC++NSILQCLSNT  LR+Y +           S     L EEF  +   
Sbjct: 27  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 86
Query: 81  LW-AGDSRYFSPQKFKVK 97
           +W +  +   SP +FK +
Sbjct: 87  IWTSSPNDVVSPSEFKTQ 104

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYSKTSGKLAEEFQL 76
          +G G  GL+NLGNTC++N++LQCLS+T PLR++ +  +F++ +       + +L E F  
Sbjct: 12 LGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFAD 69
Query: 77 IFNMLWAGDS-RYFSPQKFK 95
          +   LW  DS    +P +F+
Sbjct: 70 VIGALWHPDSCEAVNPTRFR 89

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
          GL GL+NLGNT ++NSILQCLSNT  LR+Y +           S     L EEF  +   
Sbjct: 8  GLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 67
Query: 81 LW-AGDSRYFSPQKFKVK 97
          +W +  +   SP +FK +
Sbjct: 68 IWTSSPNDVVSPSEFKTQ 85

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
          G  GL+NLGNTC++N++LQCLS+T PLR++ +  +F++ +       + +L E F  +  
Sbjct: 2  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 59
Query: 80 MLWAGDS-RYFSPQKFKV 96
           LW  DS    +P +F+ 
Sbjct: 60 ALWHPDSCEAVNPTRFRA 77

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
          G  GL+NLGNTC++N++LQCLS+T PLR++ +  +F++ +       + +L E F  +  
Sbjct: 21 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 78
Query: 80 MLWAGDS-RYFSPQKFK 95
           LW  DS    +P +F+
Sbjct: 79 ALWHPDSCEAVNPTRFR 95

>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 19  GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIF 78
           GPG TG++NLGN+CY+NS++Q L        + + +F+R           K  ++ + IF
Sbjct: 341 GPGYTGIRNLGNSCYLNSVVQVL--------FSIPDFQR-----------KYVDKLEKIF 381
Query: 79  NMLWAGDSRYFSPQKFKVKHELV 101
                  ++ FS Q  K+ H L+
Sbjct: 382 QNAPTDPTQDFSTQVAKLGHGLL 404

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
           GL+GL N+GNTC+++SILQCL +      YF+   + SM+  +S              N 
Sbjct: 140 GLSGLINMGNTCFMSSILQCLIHNP----YFI---RHSMSQIHSN-------------NC 179
Query: 81  LWAGDSRYFSPQKFKVKHELVGKFKVK 107
                 + FS    K+ HEL G    K
Sbjct: 180 KVRSPDKCFSCALDKIVHELYGALNTK 206

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
           GL+GL N+G+TC+++SILQCL +      YF+   + SM+  +S              N 
Sbjct: 135 GLSGLINMGSTCFMSSILQCLIHNP----YFI---RHSMSQIHSN-------------NC 174
Query: 81  LWAGDSRYFSPQKFKVKHELVGKFKVK 107
                 + FS    K+ HEL G    K
Sbjct: 175 KVRSPDKCFSCALDKIVHELYGALNTK 201

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
           GL+GL N+G+TC+++SILQCL +      YF+   + SM+  +S              N 
Sbjct: 140 GLSGLINMGSTCFMSSILQCLIHNP----YFI---RHSMSQIHSN-------------NC 179
Query: 81  LWAGDSRYFSPQKFKVKHELVGKFKVK 107
                 + FS    K+ HEL G    K
Sbjct: 180 KVRSPDKCFSCALDKIVHELYGALNTK 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	8e-26
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	2e-24
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	1e-22
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	1e-22
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	6e-21
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	3e-20
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	3e-15
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	4e-15
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	1e-13
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	5e-12

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 98.4 bits (245), Expect = 8e-26
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 8   SYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK- 65
              +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF    ++  +  +    
Sbjct: 48  IRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLG 107

Query: 66  TSGKLAEEFQLIFNMLWAGDSRYFSPQKFK 95
             G++AEEF +I   LW G  RY SP+ FK
Sbjct: 108 HKGEVAEEFGIIMKALWTGQYRYISPKDFK 137

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 94.1 bits (234), Expect = 2e-24
 Identities = 33/81 (40%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQ 75
               GL GL+NLGNTC++NSILQCLSNT  LR+Y +           S     L EEF 
Sbjct: 3  SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA 62

Query: 76 LIFNMLWAGDSR-YFSPQKFK 95
           +   +W        SP +FK
Sbjct: 63 KLIQTIWTSSPNDVVSPSEFK 83

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQL 76
          +      GL NLGNTCY+N+ +QC+ +   L++           +    ++  +    + 
Sbjct: 9  SAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRD 68

Query: 77 IFNMLWAGDSRYFSPQKFK 95
          +F+ +    S    P    
Sbjct: 69 LFDSMDKT-SSSIPPIILL 86

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 90.7 bits (224), Expect = 1e-22
 Identities = 21/90 (23%), Positives = 43/90 (47%)

Query: 19  GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIF 78
           GPG TG++NLGN+CY+NS++Q L +    +  +V + ++    A +  +   + +   + 
Sbjct: 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLG 400

Query: 79  NMLWAGDSRYFSPQKFKVKHELVGKFKVKV 108
           + L +G+     P+    +     K     
Sbjct: 401 HGLLSGEYSKPVPESGDGERVPEQKEVQDG 430

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 85.0 bits (210), Expect = 6e-21
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK-TSGKLAEEFQ 75
          + PGL GL NLGNTC++NS LQCLSNT+PL +YF+  E++  +         G++AE + 
Sbjct: 4  IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYA 63

Query: 76 LIFNMLWAGDSRYFSPQKFK 95
           +   +W+G   + +P+ FK
Sbjct: 64 ELIKQMWSGRDAHVAPRMFK 83

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 83.2 bits (205), Expect = 3e-20
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
          G  GL+NLGNTC++N++LQCLS+T PLR++ +    R       + + +L E F  +   
Sbjct: 2  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR-AQELTEAFADVIGA 60

Query: 81 LWAGDS-RYFSPQKFK 95
          LW  DS    +P +F+
Sbjct: 61 LWHPDSCEAVNPTRFR 76

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 69.2 bits (168), Expect = 3e-15
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 17  TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF----VTEFKRSMTAAYSKTSGKLAE 72
                  G KN+GNTCY+N+ LQ L   + LR+       ++   +  A   +   ++  
Sbjct: 19  QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVI 78

Query: 73  EFQLIFNMLWAGDSRYFSPQKF 94
           E +  F  L     +   P   
Sbjct: 79  EMKRCFENLQNKSFKSVLPVVL 100

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 69.2 bits (169), Expect = 4e-15
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 20  PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
            GL+GL N+G+TC+++SILQCL +      + +++   +     S      +     I +
Sbjct: 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP-DKCFSCALDKIVH 197

Query: 80  MLWAGDSRYFSPQK 93
            L+   +   +   
Sbjct: 198 ELYGALNTKQASSS 211

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
          G  GLKN G TCY+NS+LQ L  T+ LR+         M      +S  +    Q +F  
Sbjct: 5  GYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFYE 59

Query: 81 LWAGDSRYFSPQKFK 95
          L   D    + +  K
Sbjct: 60 LQHSDKPVGTKKLTK 74

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 60.4 bits (146), Expect = 5e-12
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 21  GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
           G  GLKN G TCY+NS+LQ L  T+ LR+         M      +S  +    Q +F  
Sbjct: 174 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFYE 228

Query: 81  LWAGDSRYFSPQKFK 95
           L   D    + +  K
Sbjct: 229 LQHSDKPVGTKKLTK 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.89
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.89
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.88
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.86
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.85
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.84
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.84
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.82
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.79
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.78
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.54
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	88.26

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.89  E-value=2.1e-23  Score=157.50  Aligned_cols=99  Identities=33%  Similarity=0.647  Sum_probs=83.5

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhccc-CCCChhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy10716         18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFK   95 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~-~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~   95 (123)
                      ..+|++||.|+||||||||+||||+|+|+|+++++... ..+++.. +.+...++..+|+.|+..||.+...+++|..|+
T Consensus         4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~   83 (367)
T 2y6e_A            4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK   83 (367)
T ss_dssp             CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred             CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence            47899999999999999999999999999999999876 4444332 013346899999999999999888899999999


Q ss_pred             HHHHhh-CCCCchhhccccccc
Q psy10716         96 VKHELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        96 ~~l~~~-~~f~~~~~~~~~~~~  116 (123)
                      +++... +.|....++|++||+
T Consensus        84 ~~l~~~~~~f~~~~QqDA~Efl  105 (367)
T 2y6e_A           84 TQVGRFAPQFSGYQQQDSQELL  105 (367)
T ss_dssp             HHHHHHCGGGCSSSCCCHHHHH
T ss_pred             HHHHHhhhhcCCCCCCCHHHHH
Confidence            999754 568888889999986

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.89  E-value=2.2e-23  Score=159.46  Aligned_cols=107  Identities=39%  Similarity=0.746  Sum_probs=89.8

Q ss_pred             cccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC--CChhHHHHHHHHHHHHHHcCC
Q psy10716          9 YRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS--KTSGKLAEEFQLIFNMLWAGD   85 (123)
Q Consensus         9 ~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~--~~~~~l~~~l~~ll~~l~~~~   85 (123)
                      ..+.|.+....+|++||.|+||||||||+||||+++|+|+++++... ..+++.. +  +...++..++..+++.||.+.
T Consensus        49 ~~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~l~~~~  127 (396)
T 2gfo_A           49 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRS-NLLGHKGEVAEEFGIIMKALWTGQ  127 (396)
T ss_dssp             GGGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTT-CTTSCTTHHHHHHHHHHHHHHHSC
T ss_pred             cccCCccCCCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhccc-CCCCcccHHHHHHHHHHHHHHcCC
Confidence            35667777778999999999999999999999999999999999876 4444433 2  234689999999999999998


Q ss_pred             CCccChHHHHHHHHhh-CCCCchhhccccccc
Q psy10716         86 SRYFSPQKFKVKHELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        86 ~~~i~P~~~~~~l~~~-~~f~~~~~~~~~~~~  116 (123)
                      ..+++|..|+.++... +.|....++|++||+
T Consensus       128 ~~~i~P~~f~~~l~~~~~~f~~~~QqDA~EFl  159 (396)
T 2gfo_A          128 YRYISPKDFKITIGKINDQFAGYSQQDSQELL  159 (396)
T ss_dssp             EEEECCHHHHHHHHHHCGGGSSSSCCCHHHHH
T ss_pred             CceECHHHHHHHHHHhchhhcCCCCCChHHHH
Confidence            8899999999999764 568888889999986

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.88  E-value=5.6e-23  Score=153.11  Aligned_cols=99  Identities=36%  Similarity=0.658  Sum_probs=82.3

Q ss_pred             cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHH-cCCCCccChHHH
Q psy10716         17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKF   94 (123)
Q Consensus        17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~-~~~~~~i~P~~~   94 (123)
                      +..+|++||.|+||||||||+||+|+++|+||+++++.. ....... .....++.++++.+++.|| .....+++|..|
T Consensus         4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~   82 (348)
T 3nhe_A            4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG-SNAHTALVEEFAKLIQTIWTSSPNDVVSPSEF   82 (348)
T ss_dssp             --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS-CCTTHHHHHHHHHHHHHHTTCCTTCEECCHHH
T ss_pred             CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC-CCcccHHHHHHHHHHHHHHcCCCCCccCHHHH
Confidence            447899999999999999999999999999999999876 4444333 3456799999999999999 556679999999


Q ss_pred             HHHHHhh-CCCCchhhccccccc
Q psy10716         95 KVKHELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        95 ~~~l~~~-~~f~~~~~~~~~~~~  116 (123)
                      ++++... +.|....++|++||+
T Consensus        83 ~~~l~~~~~~f~~~~QqDa~Efl  105 (348)
T 3nhe_A           83 KTQIQRYAPRFVGYNQQDAQEFL  105 (348)
T ss_dssp             HHHHHHHSGGGSSSCCBCHHHHH
T ss_pred             HHHHHHhhhhhCCCCccCHHHHH
Confidence            9999654 568888889999986

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.86  E-value=3.4e-22  Score=149.24  Aligned_cols=95  Identities=33%  Similarity=0.650  Sum_probs=76.5

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC-CccChHHHHHH
Q psy10716         20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS-RYFSPQKFKVK   97 (123)
Q Consensus        20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~-~~i~P~~~~~~   97 (123)
                      .|++||.|+||||||||+||+|+++|+||+++++.. ......  .+...++..+|+.++..||.+.. .+++|..|.++
T Consensus         1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~   78 (355)
T 3i3t_A            1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV   78 (355)
T ss_dssp             --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred             CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence            478999999999999999999999999999999876 333222  13346899999999999998765 68999999999


Q ss_pred             HHh-hCCCCchhhccccccc
Q psy10716         98 HEL-VGKFKVKVDKRLGKFK  116 (123)
Q Consensus        98 l~~-~~~f~~~~~~~~~~~~  116 (123)
                      +.. .+.|....++|++||+
T Consensus        79 l~~~~~~f~~~~QqDA~Efl   98 (355)
T 3i3t_A           79 FQKYVPSFSGYSQQDAQEFL   98 (355)
T ss_dssp             HHHHCGGGCSSCCCBHHHHH
T ss_pred             HHHhChhhCCCCccCHHHHH
Confidence            965 4668888889999986

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.85  E-value=1.4e-21  Score=149.75  Aligned_cols=99  Identities=19%  Similarity=0.285  Sum_probs=79.9

Q ss_pred             cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC----CChhHHHHHHHHHHHHHHcCCCCccCh
Q psy10716         17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS----KTSGKLAEEFQLIFNMLWAGDSRYFSP   91 (123)
Q Consensus        17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~----~~~~~l~~~l~~ll~~l~~~~~~~i~P   91 (123)
                      ....+++||.|+||||||||+||||+++|+||++++... ......+ .    ....++.++|+.||..||.+...+++|
T Consensus        19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~-~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p   97 (415)
T 1vjv_A           19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNS-GAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP   97 (415)
T ss_dssp             CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCT-TSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred             ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCc-ccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence            345689999999999999999999999999999999876 3221110 0    014689999999999999988789999


Q ss_pred             HHHHHHHHhh-CCCC-------chhhccccccc
Q psy10716         92 QKFKVKHELV-GKFK-------VKVDKRLGKFK  116 (123)
Q Consensus        92 ~~~~~~l~~~-~~f~-------~~~~~~~~~~~  116 (123)
                      ..|++++... +.|.       ...++|++||+
T Consensus        98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl  130 (415)
T 1vjv_A           98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELF  130 (415)
T ss_dssp             HHHHHHHHHHCGGGGCBC----CBCCCCHHHHH
T ss_pred             HHHHHHHHHhCchhhccccCCCCccccCHHHHH
Confidence            9999999754 5576       67888999885

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.84  E-value=1e-21  Score=149.54  Aligned_cols=97  Identities=16%  Similarity=0.265  Sum_probs=77.3

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy10716         18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV   96 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~   96 (123)
                      ....++||.|+||||||||+||||+|+|+||++++... ....+.. .....+++++|+.||..||.+. .+++|..|++
T Consensus        10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~   87 (404)
T 2ayn_A           10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGE-MASAQYITAALRDLFDSMDKTS-SSIPPIILLQ   87 (404)
T ss_dssp             -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHH
T ss_pred             ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCC-CCcccHHHHHHHHHHHHHhcCC-CcCChHHHHH
Confidence            35789999999999999999999999999999999876 3111111 1235789999999999999876 7999999999


Q ss_pred             HHHhh-CCCC------chhhccccccc
Q psy10716         97 KHELV-GKFK------VKVDKRLGKFK  116 (123)
Q Consensus        97 ~l~~~-~~f~------~~~~~~~~~~~  116 (123)
                      +++.. +.|.      ...++|++||+
T Consensus        88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl  114 (404)
T 2ayn_A           88 FLHMAFPQFAEKGEQGQYLQQDANECW  114 (404)
T ss_dssp             HHHHHCGGGGCBCTTSCBCCCCHHHHH
T ss_pred             HHHHhCchhhccccCCCccccCHHHHH
Confidence            99754 4465      46888888885

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.84  E-value=4.6e-21  Score=144.52  Aligned_cols=92  Identities=25%  Similarity=0.330  Sum_probs=75.3

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy10716         18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK   97 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~   97 (123)
                      +.+|++||.|+||||||||+||||+++|+||++++......     .....++.++++++|..|+.+. .+++|..+..+
T Consensus         2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~   75 (353)
T 1nb8_A            2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS   75 (353)
T ss_dssp             CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-----SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred             CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-----CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhh
Confidence            46899999999999999999999999999999998754111     1223578999999999999876 58999999888


Q ss_pred             HHhhCCCCchhhccccccc
Q psy10716         98 HELVGKFKVKVDKRLGKFK  116 (123)
Q Consensus        98 l~~~~~f~~~~~~~~~~~~  116 (123)
                      +.. ..|....++|++||+
T Consensus        76 ~~~-~~~~~~~QqDA~EFl   93 (353)
T 1nb8_A           76 FGW-ETLDSFMQHDVQELC   93 (353)
T ss_dssp             HTC-CBTTTTTTSCHHHHH
T ss_pred             cCC-CCCCcccchhHHHHH
Confidence            642 457777888888885

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=154.74  Aligned_cols=103  Identities=24%  Similarity=0.504  Sum_probs=80.7

Q ss_pred             cccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhh-cccCCCChhHHHHHHHHHHHHHHcCC----
Q psy10716         11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM-TAAYSKTSGKLAEEFQLIFNMLWAGD----   85 (123)
Q Consensus        11 ~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~-~~~~~~~~~~l~~~l~~ll~~l~~~~----   85 (123)
                      +.|.+   .+|++||.|+||||||||+||+|+++|+||++++....... ... .....++.++|++|+..||++.    
T Consensus       336 l~p~~---~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~-~~~~~~l~~~l~~L~~~L~s~~~s~~  411 (854)
T 3ihp_A          336 LKPLF---GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAP-TDPTQDFSTQVAKLGHGLLSGEYSKP  411 (854)
T ss_dssp             --CCC---STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCC-SCGGGCHHHHHHHHHHHHHSCC----
T ss_pred             ccccc---CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhcccc-CCccccHHHHHHHHHHHHhccccccc
Confidence            44555   78999999999999999999999999999999986441111 111 2445789999999999999753    


Q ss_pred             ----------------CCccChHHHHHHHHhh-CCCCchhhcccccccc
Q psy10716         86 ----------------SRYFSPQKFKVKHELV-GKFKVKVDKRLGKFKV  117 (123)
Q Consensus        86 ----------------~~~i~P~~~~~~l~~~-~~f~~~~~~~~~~~~~  117 (123)
                                      ..+++|..|++++... +.|....++|++||+.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~  460 (854)
T 3ihp_A          412 VPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFL  460 (854)
T ss_dssp             -----------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHH
T ss_pred             cccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHH
Confidence                            3489999999998654 5688888999999863

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.79  E-value=1.8e-19  Score=140.20  Aligned_cols=97  Identities=19%  Similarity=0.275  Sum_probs=75.8

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCC---------
Q psy10716         18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR---------   87 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~---------   87 (123)
                      ..+|++||.|+||||||||+||+|+++|+|+++++... ...+...  .+..++.+++..++..+|.....         
T Consensus       137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~  214 (476)
T 3mhs_A          137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVR--SPDKCFSCALDKIVHELYGALNTKQASSSSTS  214 (476)
T ss_dssp             GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSC--CTTTCHHHHHHHHHHHHHSCCCC--------C
T ss_pred             CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCC--CcccchHHHHHHHHHHHhhccccccccccccc
Confidence            47899999999999999999999999999999999765 3333221  33468999999999999975432         


Q ss_pred             ccChHHHHHHHH----hhCCCCchhhccccccc
Q psy10716         88 YFSPQKFKVKHE----LVGKFKVKVDKRLGKFK  116 (123)
Q Consensus        88 ~i~P~~~~~~l~----~~~~f~~~~~~~~~~~~  116 (123)
                      .+.|..+...+.    ..+.|....++|++||+
T Consensus       215 ~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl  247 (476)
T 3mhs_A          215 TNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFW  247 (476)
T ss_dssp             CCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHH
T ss_pred             ccCcchHHHHHHHHHHhccccCCCCCcCHHHHH
Confidence            567877776654    23457777788888885

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.78  E-value=2.1e-19  Score=141.62  Aligned_cols=92  Identities=25%  Similarity=0.324  Sum_probs=72.2

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy10716         18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK   97 (123)
Q Consensus        18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~   97 (123)
                      ..+|++||.|+||||||||+||||+++|+||++++......     .....++.++++++|..|+.+. .+++|..|...
T Consensus       171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~  244 (522)
T 2f1z_A          171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS  244 (522)
T ss_dssp             TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-----SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHHH
T ss_pred             ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-----CcccchHHHHHHHHHHHHhcCC-CccCcHHHHhh
Confidence            36789999999999999999999999999999998754111     1223578999999999999876 58999999887


Q ss_pred             HHhhCCCCchhhccccccc
Q psy10716         98 HELVGKFKVKVDKRLGKFK  116 (123)
Q Consensus        98 l~~~~~f~~~~~~~~~~~~  116 (123)
                      +. ...|....++|++||+
T Consensus       245 ~~-~~~~~~~~QqDa~Efl  262 (522)
T 2f1z_A          245 FG-WETLDSFMQHDVQELC  262 (522)
T ss_dssp             TC-CCTTTSSTTSCHHHHH
T ss_pred             cC-CccCCCcccccHHHHH
Confidence            63 2457777788888875

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.54  E-value=1.6e-15  Score=114.73  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHH-HHHHHHHHcCCCCccChHHHHH
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEF-QLIFNMLWAGDSRYFSPQKFKV   96 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l-~~ll~~l~~~~~~~i~P~~~~~   96 (123)
                      ...++||.|+||||||||+||||+.+|++++.++... ...-.    .....+..++ +.++..|..   ..+.|..++.
T Consensus         6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~----~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~   78 (374)
T 2vhf_A            6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDV----EYYSETQELLRTEIVNPLRI---YGYVCATKIM   78 (374)
T ss_dssp             SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSC----TTHHHHHHHHHHTTHHHHHH---TSEECHHHHH
T ss_pred             cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcc----hhHHHHHHHHHHHHHHHHhh---cCCCcHHHHH
Confidence            3468999999999999999999999999999999876 21111    1234688899 899999987   5899999999


Q ss_pred             HHHh-hCCCCc
Q psy10716         97 KHEL-VGKFKV  106 (123)
Q Consensus        97 ~l~~-~~~f~~  106 (123)
                      .++. .++|+.
T Consensus        79 ~LR~~~pQfae   89 (374)
T 2vhf_A           79 KLRKILEKVEA   89 (374)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHhHHHhc
Confidence            9864 455554

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=88.26  E-value=0.23  Score=32.78  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             CCCccccccCCchhhHHHHHHHHhC
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSN   43 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~   43 (123)
                      +..+.|.-|.-++|++|++||....
T Consensus        10 kk~fys~pN~hdncWLNtilQLfry   34 (167)
T 1qmy_A           10 KKTFYSRPNNHDNAWLNAILQLFRY   34 (167)
T ss_dssp             EEECCCCCCSSSCHHHHHHHHHHHH
T ss_pred             ccccccCCCCCcchHHHHHHHHHHH
Confidence            3456789999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-22
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	2e-19
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	6e-18
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-17
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	6e-17

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMT--AAYSKTSG 68
          +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF     +     +      G
Sbjct: 4  LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKG 63

Query: 69 KLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98
          ++AEEF +I   LW G  RY SP+ FK+  
Sbjct: 64 EVAEEFGIIMKALWTGQYRYISPKDFKITI 93

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 2e-19
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
          GL GL+NLGNTC++NSILQCLSNT  LR+Y +           S     L EEF  +   
Sbjct: 2  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61

Query: 81 LWAGDSR-YFSPQKFKVKHE 99
          +W        SP +FK + +
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQ 81

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 6e-18
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
          GL NLGNTCY+N+ +QC+ +   L++           +    ++  +    + +F+ +  
Sbjct: 6  GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK 65

Query: 84 GDSRYFSPQKFK 95
            S    P    
Sbjct: 66 T-SSSIPPIILL 76

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.4 bits (181), Expect = 2e-17
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFV----TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
          G KN+GNTCY+N+ LQ L   + LR+  +    ++   +  A   +   ++  E +  F 
Sbjct: 8  GFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFE 67

Query: 80 MLWAGDSRYFSPQKFK 95
           L     +   P    
Sbjct: 68 NLQNKSFKSVLPVVLL 83

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 6e-17
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
           G  GLKN G TCY+NS+LQ L  T+ LR+         M      +S  +    Q +F 
Sbjct: 4  TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFY 58

Query: 80 MLWAGDSRYFSPQKFK 95
           L   D    + +  K
Sbjct: 59 ELQHSDKPVGTKKLTK 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.88
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.83
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.83
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.82
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.81
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	88.56

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-23  Score=152.11  Aligned_cols=108  Identities=39%  Similarity=0.726  Sum_probs=90.6

Q ss_pred             cccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccC-CCChhHHHHHHHHHHHHHHcCCC
Q psy10716          9 YRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAY-SKTSGKLAEEFQLIFNMLWAGDS   86 (123)
Q Consensus         9 ~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~-~~~~~~l~~~l~~ll~~l~~~~~   86 (123)
                      +++.|.+.+++||++||.|+||||||||+||+|+++|+|++++++.. ...+.... .+...++..+++.++..|+.+..
T Consensus         2 ~~~~~~~~~~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~   81 (348)
T d2gfoa1           2 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQY   81 (348)
T ss_dssp             GGGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCE
T ss_pred             CCCCCccCCCCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999999999999998766 44433320 24456899999999999999998


Q ss_pred             CccChHHHHHHHHhh-CCCCchhhccccccc
Q psy10716         87 RYFSPQKFKVKHELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        87 ~~i~P~~~~~~l~~~-~~f~~~~~~~~~~~~  116 (123)
                      ..++|..|..++... ..+....++|++||+
T Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~qqDa~E~l  112 (348)
T d2gfoa1          82 RYISPKDFKITIGKINDQFAGYSQQDSQELL  112 (348)
T ss_dssp             EEECCHHHHHHHHHHCGGGSSSSCCCHHHHH
T ss_pred             CccccccccccccccCccccCcccCCHHHHH
Confidence            899999999999654 446667778888876

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.6e-21  Score=139.90  Aligned_cols=95  Identities=38%  Similarity=0.689  Sum_probs=77.0

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC-CccChHHHHHHH
Q psy10716         21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS-RYFSPQKFKVKH   98 (123)
Q Consensus        21 ~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~-~~i~P~~~~~~l   98 (123)
                      |++||.|+||||||||+||+|+++|+||+++++.. ...++.. .....++.+++..++..|+.... ..++|..++..+
T Consensus         2 g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~i~p~~~~~~~   80 (336)
T d2hd5a1           2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG-SNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI   80 (336)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---C-CSSCCHHHHHHHHHHHHHHTSCTTCEECCHHHHHHH
T ss_pred             CccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccC-CChhHHHHHHHHHHHHHHHhCCCCCCCCchhhhccc
Confidence            88999999999999999999999999999998866 4444443 45567899999999999987664 489999999998


Q ss_pred             Hhh-CCCCchhhccccccc
Q psy10716         99 ELV-GKFKVKVDKRLGKFK  116 (123)
Q Consensus        99 ~~~-~~f~~~~~~~~~~~~  116 (123)
                      ... .+|....++|+.||+
T Consensus        81 ~~~~~~~~~~~q~Da~Ef~   99 (336)
T d2hd5a1          81 QRYAPRFVGYNQQDAQEFL   99 (336)
T ss_dssp             HHHCGGGSSCCCBCHHHHH
T ss_pred             ccccccccCcccccHHHHH
Confidence            553 567777777887775

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4e-21  Score=141.91  Aligned_cols=93  Identities=25%  Similarity=0.320  Sum_probs=76.0

Q ss_pred             cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy10716         17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV   96 (123)
Q Consensus        17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~   96 (123)
                      ++.+|.+||.|+||||||||+||+|+++|+|+++++......     .....++..+++++|..|+.+. .++.|..+..
T Consensus         1 ~~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~   74 (347)
T d1nbfa_           1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK   74 (347)
T ss_dssp             CCSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT-----CCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred             CCCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC-----CcccchHHHHHHHHHHHHhcCC-CCcChHHHHH
Confidence            457899999999999999999999999999999998876111     1234579999999999999876 5889999988


Q ss_pred             HHHhhCCCCchhhccccccc
Q psy10716         97 KHELVGKFKVKVDKRLGKFK  116 (123)
Q Consensus        97 ~l~~~~~f~~~~~~~~~~~~  116 (123)
                      .+. ...|....++|++||+
T Consensus        75 ~~~-~~~~~~~~qqDa~Ef~   93 (347)
T d1nbfa_          75 SFG-WETLDSFMQHDVQELC   93 (347)
T ss_dssp             HTT-CCGGGGGSCBCHHHHH
T ss_pred             hhc-hhhcchHHHHHHHHHH
Confidence            863 2346777788888885

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.5e-21  Score=140.77  Aligned_cols=97  Identities=20%  Similarity=0.275  Sum_probs=73.8

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC---CChhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy10716         21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS---KTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV   96 (123)
Q Consensus        21 ~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~---~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~   96 (123)
                      -|+||.|+||||||||+||||+++|+|+++++... .........   ....+++.++++++..||.+...+++|..+.+
T Consensus         5 ~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~~~   84 (397)
T d1vjva_           5 LPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLLN   84 (397)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHH
Confidence            46899999999999999999999999999998876 322222101   22347899999999999999988999999999


Q ss_pred             HHHhh-CCC-------Cchhhcccccccc
Q psy10716         97 KHELV-GKF-------KVKVDKRLGKFKV  117 (123)
Q Consensus        97 ~l~~~-~~f-------~~~~~~~~~~~~~  117 (123)
                      .++.. +.|       ....++|++||+.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~QqDa~Efl~  113 (397)
T d1vjva_          85 TLRKCYPQFAERDSQGGFYKQQDAEELFT  113 (397)
T ss_dssp             HHHHHCGGGGCBC----CBCCCCHHHHHH
T ss_pred             HHHHHhhhhccccccccccccccHHHHHH
Confidence            98653 222       3345778888753

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.7e-21  Score=140.07  Aligned_cols=93  Identities=17%  Similarity=0.306  Sum_probs=71.6

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh
Q psy10716         22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHEL  100 (123)
Q Consensus        22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~~  100 (123)
                      |+||.|+||||||||+||+|+++|+||+++.... ....... .....++.++|+.++..|+... ..+.|..+.+.+..
T Consensus         4 P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~-~~~~p~~~~~~l~~   81 (383)
T d2ayna1           4 PCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGE-MASAQYITAALRDLFDSMDKTS-SSIPPIILLQFLHM   81 (383)
T ss_dssp             CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHHHH
T ss_pred             CcCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCCc-cccHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHHH
Confidence            5899999999999999999999999999998876 3222211 2345679999999999999865 68999999999865


Q ss_pred             h-CCCC------chhhccccccc
Q psy10716        101 V-GKFK------VKVDKRLGKFK  116 (123)
Q Consensus       101 ~-~~f~------~~~~~~~~~~~  116 (123)
                      . +.|.      ...++|++||+
T Consensus        82 ~~~~~~~~~~~~~~~QqDa~Ef~  104 (383)
T d2ayna1          82 AFPQFAEKGEQGQYLQQDANECW  104 (383)
T ss_dssp             HCGGGGCBCTTSCBCCCCHHHHH
T ss_pred             HhHhhccccccCchhhhhHHHHH
Confidence            4 3333      33478888865

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=88.56  E-value=0.096  Score=32.67  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             CCCccccccCCchhhHHHHHHHHhC
Q psy10716         19 GPGLTGLKNLGNTCYINSILQCLSN   43 (123)
Q Consensus        19 ~~~~~GL~NlGNTCymNs~LQ~L~~   43 (123)
                      +.-..+..|..| |++|++||....
T Consensus        11 k~f~s~pnnhdN-cWLN~ilQLfry   34 (156)
T d1qmya_          11 KTFYSRPNNHDN-AWLNAILQLFRY   34 (156)
T ss_dssp             EECCCCCCSSSC-HHHHHHHHHHHH
T ss_pred             ceeecCCCcccc-hHHHHHHHHHHH
Confidence            345667888889 999999998643