Psyllid ID: psy10717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIIIIKS
Secondary Structure (PSIPRED)
ccccccccccccccEEccccEEEcccccccccccccccccccccEEEEEEEcccccccccEEEEEEEccccEEEEcccccEEEcccccccccEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHcccEEccccccccccHHccccccccEEEEEEEEEEccccccccEEEEEEEccccEEEEcccccccccHHHcccHHHEEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfdddghrftsdgwcrkkqttvdfpvdnlnmseytvnsesrdvrYDLYAVSnhygtmesghytaycrnnykwykfddsdvseisaskvkspaAYILFYMSFIIIIKS
Flexible Loop (DISEMBL)
mfdddghrftsdgwcrkkqttvdfpvdnlnmseytvnsesrdvRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISaskvkspaayILFYMSFIIIIKS
Low Complexity Region (SEG)
MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIIIIKS
Disordered region (IsUnstruct)
***********DGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIIII**
Disordered Region (DISOPRED)
*FDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIII***
Disordered Region (DISEMBL)
*********TSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIIIIKS
Disordered Region (DISPRO)
****DGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIIII**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFIIIIKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q80U87	1080	Ubiquitin carboxyl-termin	yes	N/A	0.878	0.087	0.536	7e-22
P40818	1118	Ubiquitin carboxyl-termin	yes	N/A	0.878	0.084	0.546	9e-22
Q5RCD3	963	Ubiquitin carboxyl-termin	no	N/A	0.850	0.094	0.531	1e-20
Q13107	963	Ubiquitin carboxyl-termin	no	N/A	0.850	0.094	0.531	1e-20
B2GUZ1	961	Ubiquitin carboxyl-termin	no	N/A	0.850	0.094	0.531	4e-20
P35123	962	Ubiquitin carboxyl-termin	no	N/A	0.850	0.094	0.531	5e-20
A6QR55	963	Ubiquitin carboxyl-termin	no	N/A	0.850	0.094	0.521	9e-20
Q9C585	871	Ubiquitin carboxyl-termin	no	N/A	0.803	0.098	0.5	2e-17
Q70CQ4	1352	Ubiquitin carboxyl-termin	no	N/A	0.850	0.067	0.413	3e-17
O22207	924	Ubiquitin carboxyl-termin	no	N/A	0.766	0.088	0.482	5e-17

>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 975  RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYGGLDGGHYTAYC 1034

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+IS S V+S AAYILFY S 
Sbjct: 1035 KNAARQRWFKFDDHEVSDISVSSVRSSAAYILFYTSL 1071

Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 1013 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1072

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 1073 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 1109

Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 3/94 (3%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ + + R K  T V+FP+  LNMSE+  N  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 827 RFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 886

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS+VS  S  ++ + AAY+LFY
Sbjct: 887 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFY 920

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 3/94 (3%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ + + R K  T V+FP+  LNMSE+  N  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 827 RFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 886

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS+VS  S  ++ + AAY+LFY
Sbjct: 887 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFY 920

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 62/94 (65%), Gaps = 3/94 (3%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ + + R K  T V+FPV  LNMSE+  +  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 825 RFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRAARPYVYDLIAVSNHYGAMGVGHYTAYA 884

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS VS  S  ++ + AAY+LFY
Sbjct: 885 KNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFY 918

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 62/94 (65%), Gaps = 3/94 (3%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ + + R K  T V+FPV  LNMSE+  +  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 826 RFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTAYA 885

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS VS  S  ++ + AAY+LFY
Sbjct: 886 KNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFY 919

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 3/94 (3%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ + + R K  T V+FPV  LNMSE+  +  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 827 RFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARPYVYDLIAVSNHYGAMGVGHYTAYA 886

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS+VS     ++ + AAY+LFY
Sbjct: 887 KNKLNGKWYYFDDSNVSLACEDQIVTKAAYVLFY 920

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 2/88 (2%)

Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDV-RYDLYAVSNHYGTMESGHYTAYCRNNY-KWYK 74
           K +  VDFP+DNL++S Y      +   RY LYA+SNHYG+M  GHYTAY  +   +WY 
Sbjct: 783 KLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWYD 842

Query: 75  FDDSDVSEISASKVKSPAAYILFYMSFI 102
           FDDS V +IS  K+K+ AAY+LFY   +
Sbjct: 843 FDDSHVHQISQEKIKTSAAYVLFYKRLV 870

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 62/116 (53%), Gaps = 25/116 (21%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSE----------------------YTVNSESRDVR 44
           RF  +G  R K Q  V FP+  L+M+                       Y +  +  D  
Sbjct: 647 RFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYI 706

Query: 45  YDLYAVSNHYGTMESGHYTAYCRNNYK--WYKFDDSDVSEISASKVKSPAAYILFY 98
           YDLYAV NH+GTM+ GHYTAYC+N+    WY FDDSDV ++S  +V +  AYILFY
Sbjct: 707 YDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFY 762

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 61/85 (71%), Gaps = 3/85 (3%)

Query: 17  KKQTTVDFPVDNLNMSEYTVNSE-SRDVRYDLYAVSNHYGTMESGHYTAYCR--NNYKWY 73
           K +T V+FP+ +L++++Y  N   S+   Y+LYA++NHYG M SGHYTA+ +  ++ +WY
Sbjct: 829 KLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLLDDSRWY 888

Query: 74  KFDDSDVSEISASKVKSPAAYILFY 98
            FDDS +S I+   VKS AAY+LFY
Sbjct: 889 NFDDSHISHINEDDVKSGAAYVLFY 913

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
326675880	1067	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.088	0.587	2e-26
327288428	1066	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.088	0.597	2e-26
432851662	1074	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.087	0.587	2e-25
348541545	1082	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.086	0.567	3e-25
338716960	1011	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.092	0.536	9e-25
402874297	1109	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.878	0.084	0.546	9e-25
149691949	1117	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.084	0.536	1e-24
426233324	1009	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.093	0.546	1e-24
194034734	1117	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.084	0.536	2e-24
426233322	1086	PREDICTED: ubiquitin carboxyl-terminal h	0.878	0.086	0.546	2e-24

>gi|326675880|ref|XP_693811.5| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Danio rerio]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 73/97 (75%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF  +G W  K QT VDFP+DNL++S+Y +  ++   +Y+LYAVSNHYG M+ GHYTAYC
Sbjct: 971  RFKYEGRWREKLQTLVDFPLDNLDLSQYVIGPKNNLKKYNLYAVSNHYGGMDGGHYTAYC 1030

Query: 67   RNNYK--WYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N  K  W+KFDD +VSEIS+S V+SPAAYI FY S 
Sbjct: 1031 KNPMKQRWFKFDDHEVSEISSSTVRSPAAYIFFYSSL 1067

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327288428|ref|XP_003228928.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Anolis carolinensis]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP+++L++S+Y +  +S   RY+L+AVSNHYG ++ GHYTAYC
Sbjct: 961  RFSYDGRWKQKLQTSVDFPLESLDVSQYVIGPKSNSKRYNLFAVSNHYGGLDGGHYTAYC 1020

Query: 67   RNNYK--WYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N  K  WYKFDD +VSEIS S VKS AAYILFY S 
Sbjct: 1021 KNATKQRWYKFDDHEVSEISTSSVKSSAAYILFYTSL 1057

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432851662|ref|XP_004067022.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Oryzias latipes]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ +G W +K QTTVDFP+DNL++++Y +  +    RY LY VSNHYG ++ GHYTAYC
Sbjct: 978  RFSYEGRWKQKLQTTVDFPLDNLDLTQYVIGPKQTLKRYYLYGVSNHYGGLDGGHYTAYC 1037

Query: 67   RNNYK--WYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N  K  WYKFDD +VSEIS S VKS AAYILFY + 
Sbjct: 1038 KNATKQRWYKFDDHEVSEISTSSVKSSAAYILFYSTL 1074

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348541545|ref|XP_003458247.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Oreochromis niloticus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 73/97 (75%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ +G W +K QT+VDFP+DNL++++Y +  +    RY+LY VSNHYG ++ GHYTAYC
Sbjct: 986  RFSYEGRWKQKLQTSVDFPLDNLDLAQYVIGPKQSLKRYNLYGVSNHYGGLDGGHYTAYC 1045

Query: 67   RNNYK--WYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N  K  WYKFDD +VS+IS S VKS AAYILFY + 
Sbjct: 1046 KNAAKQRWYKFDDHEVSDISTSSVKSSAAYILFYSTL 1082

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338716960|ref|XP_003363554.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Equus caballus]

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 906  RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 965

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+I+ S VKS AAYILFY S 
Sbjct: 966  KNAARQRWFKFDDHEVSDIAVSSVKSSAAYILFYTSL 1002

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402874297|ref|XP_003900978.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 8 [Papio anubis]

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 1004 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1063

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 1064 KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTSL 1100

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149691949|ref|XP_001501973.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Equus caballus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 1012 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1071

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+I+ S VKS AAYILFY S 
Sbjct: 1072 KNAARQRWFKFDDHEVSDIAVSSVKSSAAYILFYTSL 1108

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426233324|ref|XP_004010667.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Ovis aries]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 904  RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 963

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 964  KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTSL 1000

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194034734|ref|XP_001927765.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Sus scrofa]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++++Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 1012 RFSYDGRWKQKLQTSVDFPLENLDLAQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1071

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 1072 KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTSL 1108

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426233322|ref|XP_004010666.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform 1 [Ovis aries]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 8    RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
            RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 981  RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1040

Query: 67   RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
            +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 1041 KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTSL 1077

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
UNIPROTKB|E1BF70	421	USP8 "Ubiquitin carboxyl-termi	0.869	0.220	0.552	4e-26
RGD|1304979	416	Usp8 "ubiquitin specific pepti	0.869	0.223	0.552	4e-26
ZFIN|ZDB-GENE-030131-1949	1099	usp8 "ubiquitin specific pepti	0.869	0.084	0.593	5.7e-26
UNIPROTKB|E1C0G5	1082	E1C0G5 "Ubiquitin carboxyl-ter	0.878	0.086	0.577	1.2e-25
UNIPROTKB|B4DKA8	1012	USP8 "Ubiquitin carboxyl-termi	0.869	0.091	0.552	5.8e-25
UNIPROTKB|E2RH35	1116	USP8 "Ubiquitin carboxyl-termi	0.869	0.083	0.552	6.8e-25
UNIPROTKB|P40818	1118	USP8 "Ubiquitin carboxyl-termi	0.869	0.083	0.552	6.8e-25
UNIPROTKB|Q0IIM6	1085	USP8 "Ubiquitin carboxyl-termi	0.869	0.085	0.552	8.3e-25
MGI|MGI:1934029	1080	Usp8 "ubiquitin specific pepti	0.869	0.086	0.541	1.7e-24
UNIPROTKB|F1RYL9	1089	USP8 "Ubiquitin carboxyl-termi	0.869	0.085	0.541	1.7e-24

UNIPROTKB|E1BF70 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 53/96 (55%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:   316 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 375

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S VKS AAYILFY S
Sbjct:   376 KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTS 411

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

RGD|1304979 Usp8 "ubiquitin specific peptidase 8" [Rattus norvegicus (taxid:10116)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 53/96 (55%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  +S   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:   311 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKSSLKKYNLFSVSNHYGGLDGGHYTAYC 370

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S V+S AAYILFY S
Sbjct:   371 KNAARQRWFKFDDHEVSDISVSSVRSSAAYILFYTS 406

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007032 "endosome organization" evidence=ISO

GO:0007265 "Ras protein signal transduction" evidence=ISO

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0031313 "extrinsic to endosome membrane" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

GO:0001669 "acrosomal vesicle" evidence=ISO

ZFIN|ZDB-GENE-030131-1949 usp8 "ubiquitin specific peptidase 8" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 5.7e-26, P = 5.7e-26
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF  +G W  K QT VDFP+DNL++S+Y +  ++   +Y+LYAVSNHYG M+ GHYTAYC
Sbjct:  1003 RFKYEGRWREKLQTLVDFPLDNLDLSQYVIGPKNNLKKYNLYAVSNHYGGMDGGHYTAYC 1062

Query:    67 RNNYK--WYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N  K  W+KFDD +VSEIS+S V+SPAAYI FY S
Sbjct:  1063 KNPMKQRWFKFDDHEVSEISSSTVRSPAAYIFFYSS 1098

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E1C0G5 E1C0G5 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 56/97 (57%), Positives = 76/97 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++ L++S+Y +  ++   RY+L++VSNHYG ++ GHYTAYC
Sbjct:   977 RFSYDGRWKQKLQTSVDFPLETLDLSQYVIGPKNNLKRYNLFSVSNHYGGLDGGHYTAYC 1036

Query:    67 RNNYK--WYKFDDSDVSEISASKVKSPAAYILFYMSF 101
             +N  K  W+KFDD +VSEISAS VKS AAYILFY S+
Sbjct:  1037 KNASKQRWFKFDDHEVSEISASSVKSSAAYILFYTSY 1073

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

UNIPROTKB|B4DKA8 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 5.8e-25, P = 5.8e-25
 Identities = 53/96 (55%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:   907 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 966

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S VKS AAYILFY S
Sbjct:   967 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 1002

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|E2RH35 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 6.8e-25, P = 6.8e-25
 Identities = 53/96 (55%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:  1011 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1070

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S VKS AAYILFY S
Sbjct:  1071 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 1106

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|P40818 USP8 "Ubiquitin carboxyl-terminal hydrolase 8" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 6.8e-25, P = 6.8e-25
 Identities = 53/96 (55%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:  1013 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1072

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S VKS AAYILFY S
Sbjct:  1073 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 1108

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0007032 "endosome organization" evidence=IMP

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IMP

GO:0030496 "midbody" evidence=IDA

UNIPROTKB|Q0IIM6 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 8.3e-25, P = 8.3e-25
 Identities = 53/96 (55%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:   980 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1039

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S VKS AAYILFY S
Sbjct:  1040 KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTS 1075

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

MGI|MGI:1934029 Usp8 "ubiquitin specific peptidase 8" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 52/96 (54%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:   975 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYGGLDGGHYTAYC 1034

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S V+S AAYILFY S
Sbjct:  1035 KNAARQRWFKFDDHEVSDISVSSVRSSAAYILFYTS 1070

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007032 "endosome organization" evidence=ISO;IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IPI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO;IDA;IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0030496 "midbody" evidence=ISO;IDA

GO:0031313 "extrinsic to endosome membrane" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

UNIPROTKB|F1RYL9 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 292 (107.8 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 52/96 (54%), Positives = 75/96 (78%)

Query:     8 RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
             RF+ DG W +K QT+VDFP++NL++++Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct:   984 RFSYDGRWKQKLQTSVDFPLENLDLAQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 1043

Query:    67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMS 100
             +N    +W+KFDD +VS+IS S VKS AAYILFY S
Sbjct:  1044 KNAARQRWFKFDDHEVSDISISSVKSSAAYILFYTS 1079

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40818	UBP8_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.5463	0.8785	0.0840	yes	N/A
Q80U87	UBP8_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.5360	0.8785	0.0870	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	107
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	3e-34
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	2e-25
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	1e-24
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	6e-24
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	4e-23
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	5e-19
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	2e-15
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	2e-12
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	3e-12
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	5e-11
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	5e-11
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	3e-10
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	1e-09
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	3e-09
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	1e-08
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	8e-08
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	1e-06
cd02673	245	cd02673, Peptidase_C19Q, A subfamily of Peptidase	4e-06
cd02665	228	cd02665, Peptidase_C19I, A subfamily of Peptidase	1e-05
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	2e-04
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	2e-04

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score =  117 bits (295), Expect = 3e-34
 Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 4/95 (4%)

Query: 8   RFTSD-GWCRKKQTTVDFPVDNLNMSEYTVNSESR-DVRYDLYAVSNHYGTMESGHYTAY 65
           RF+   G  RK  T V FP+++L+++ Y          +YDLYAV NHYG++  GHYTAY
Sbjct: 135 RFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAY 194

Query: 66  CRNNYK--WYKFDDSDVSEISASKVKSPAAYILFY 98
           C+NN    WYKFDDS V+++S S V S +AYILFY
Sbjct: 195 CKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFY 229

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 96.3 bits (240), Expect = 2e-25
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 8   RFTS-DGWCRKK-QTTVDFPVDNLNMSEY---TVNSESRDVRYDLYAVSNHYG-TMESGH 61
           RF   +    KK    V+FP   L++S Y    +  E    +Y+L AV  H G ++  GH
Sbjct: 216 RFEDFNRETEKKISDRVEFP-LELDLSSYLEEELEGEEPPTKYELVAVVVHSGSSLSGGH 274

Query: 62  YTAYCRNNY--KWYKFDDSDVSEISASKVKSPAAYILFY 98
           Y AY +     KW KFDD  VS ++  +V   +AYILFY
Sbjct: 275 YIAYIKKREKNKWVKFDDEKVSVVTEEEVLRSSAYILFY 313

Length = 313

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 96.1 bits (239), Expect = 1e-24
 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 8   RFTSD-GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+S   +  K    V++P+D+L++S      +   + YDLYAV NHYG +  GHYTAY 
Sbjct: 726 RFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYA 785

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           RN  N  WY FDDS ++E+      + +AY+LFY
Sbjct: 786 RNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819

Length = 823

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 92.4 bits (230), Expect = 6e-24
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 11/101 (10%)

Query: 8   RFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSE---------SRDVRYDLYAVSNHYGTME 58
             + +   RK  T V FP++ LNM+ YT +S            D  YDL+AV  H GT++
Sbjct: 228 EHSLNKTSRKIDTYVQFPLE-LNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLD 286

Query: 59  SGHYTAYCRNNY-KWYKFDDSDVSEISASKVKSPAAYILFY 98
           +GHYTAYCR    +W+KFDD+ ++ +S  +V    AY+LFY
Sbjct: 287 TGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 89.1 bits (221), Expect = 4e-23
 Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 15/105 (14%)

Query: 9   FTSDGWCRKKQTTVDFPVDNLNMSEYTV------NSESRDVRYDLYAVSNHYGT-MESGH 61
           F  DG   K  T V FP   L++S Y        +S++   +Y+L AV  H GT  +SGH
Sbjct: 152 FNEDGTKEKLNTKVSFP-LELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGH 210

Query: 62  YTAYCRN--NYKWYKFDDSDVSEISASKVKSPA-----AYILFYM 99
           Y AY ++  + KWYKF+D  V+E+S  +V         AYILFY 
Sbjct: 211 YVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 78.9 bits (195), Expect = 5e-19
 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 22  VDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGT-MESGHYTAYCRN-NYKWYKFDDSD 79
           + FP + L++S Y        ++Y LYAV  H G    SGHY  Y ++ N KWY  DDS 
Sbjct: 226 ISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSK 284

Query: 80  VSEISASKVKSPAAYILFYM 99
           VS +S   V S  AYILFY+
Sbjct: 285 VSPVSIETVLSQKAYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 31/121 (25%)

Query: 8   RFTSDGWCRKKQTT--VDFPVDNLNMSEYT-----VNSESRDVRYDLYAVSNHYGTMESG 60
           RF        ++ +  V FP + L+++ +       + +   V Y LY V  H GTM SG
Sbjct: 159 RFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSG 217

Query: 61  HYTAYCR-----------------------NNYKWYKFDDSDVSEISASKVKSPAAYILF 97
           HY AY +                        + +WY   DSDV E+S  +V    AY+LF
Sbjct: 218 HYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLF 277

Query: 98  Y 98
           Y
Sbjct: 278 Y 278

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 10  TSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN 69
           T  GW           V+      +         +Y L  V  H GT+  GHY +  + +
Sbjct: 328 TPQGWKN------TASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKRS 381

Query: 70  YKWYKFDDSDVSEISAS-KVKSPAAYILFY 98
             W  +DDS V + S +     P++YILFY
Sbjct: 382 GTWNVYDDSQVRKGSRTTSGSHPSSYILFY 411

Length = 415

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 19/94 (20%)

Query: 15  CRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCR--NNYK 71
            RK    V FP   L++ E    S      Y+L AV  H G + +SGHY A+ R  N+ K
Sbjct: 220 LRK----VKFPF-ELDLYELCTPSGY----YELVAVITHQGRSADSGHYVAWVRRKNDGK 270

Query: 72  WYKFDDSDVSEISASKVKSPA-------AYILFY 98
           W KFDD  VSE++   +   +       AYIL Y
Sbjct: 271 WIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLY 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 23/81 (28%)

Query: 41  RDVRYDLYAVSNHYGTMESGHYTAY----------------------CRNNYKWYKFDDS 78
             V Y L AV  HYG+  SGHY  Y                         ++ W++  D+
Sbjct: 159 PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDT 218

Query: 79  DVSEISASKVK-SPAAYILFY 98
            V E+S S+V    +AY+LFY
Sbjct: 219 TVKEVSESEVLEQKSAYMLFY 239

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 8   RFTSD---GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGT-MESGHYT 63
           RF  D   G  +K   ++ FP + L+M EY   S+     Y+L  V  H G    SGHY 
Sbjct: 207 RFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYI 265

Query: 64  AYCRNNY--KWYKFDDSDVSEISASKVK 89
           A+ ++    +WYKF+D DV E+    +K
Sbjct: 266 AHIKDEQTGEWYKFNDEDVEEMPGKPLK 293

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 36/110 (32%)

Query: 24  FPVDNLNMSEYTV-----------NSESRDVRYDLYAVSNHYGTMESGHYTAYCR--NNY 70
           FP   L+M  YT              +S    Y+L+ V  H G    GHY +Y +  ++ 
Sbjct: 221 FP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDG 279

Query: 71  KWYKFDDSDVSEIS----------------------ASKVKSPAAYILFY 98
           KWYKF+D  V+                          +  ++  AY+LFY
Sbjct: 280 KWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFY 329

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 20  TTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFDDS 78
             V FP++ L +   T ++E+ D  Y+L AV  H G     GHY +  +++  W  FDD 
Sbjct: 213 YRVVFPLE-LRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDE 271

Query: 79  DVSEISASKV-------KSPA-AYILFY 98
            V +I  + V        + A AY+LFY
Sbjct: 272 TVEKIDENAVEEFFGDSPNQATAYVLFY 299

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 2   FDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESG 60
           F  +G  F   G   K  T +  P+  L++ E++      DV Y L+AV  H G T+ SG
Sbjct: 232 FAANGSEFDCYGGLSKVNTPLLTPLK-LSLEEWS-TKPKNDV-YRLFAVVMHSGATISSG 288

Query: 61  HYTAYCRNNYKWYKFDDSDV---------SEISASKVKSPAAYILFY 98
           HYTAY R    W  FDDS+V           +S +   +   Y+LFY
Sbjct: 289 HYTAYVR----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFY 331

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 30/91 (32%)

Query: 38  SESRDVRYDLYAVSNHYGT-MESGHYTAYCRN----------------------NYKWYK 74
             +R V Y LYAV  H G   ESGHY  Y R+                      +  WY 
Sbjct: 236 LVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYL 295

Query: 75  FDDSDVSEISASKVK-------SPAAYILFY 98
           F+DS V+  S   V+           YILFY
Sbjct: 296 FNDSRVTFSSFESVQNVTSRFPKDTPYILFY 326

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 8   RFT-SDGWCRKKQTTVDFPVDNLNMSEYT---VNSESRDVRYDLYAVSNHYGT-MESGHY 62
           RF+ ++ +  K  T V+FP+ NL++S+Y      S +   +Y+L A   H GT  E G +
Sbjct: 342 RFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTW 401

Query: 63  TAYCRNNY--KWYKFDDSDVSEISASKVKSPAAYILFY 98
               R+    KW++  D +V E+    +    +YI  +
Sbjct: 402 RVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIW 439

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 31  MSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYKFDDSDVSEISASKV 88
           +      SE+ D  Y LY V  H G +  GHY A  +   + +WYKFDD+ V+  +  +V
Sbjct: 417 LDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEV 476

Length = 1089

>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 11  SDGWCRKKQT-TVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRN 68
            +    K +  T D+   N    E        D +Y L AV  H G +   GHY AY + 
Sbjct: 152 INLKRYKLRIATSDYLKKN---EEIMKKYCGTDAKYSLVAVICHLGESPYDGHYIAYTKE 208

Query: 69  NY---KWYKFDDSDVSEISASKVK---SPAAYILFY 98
            Y    W    D ++  +S + V      + Y++FY
Sbjct: 209 LYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFY 244

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 245

>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 34  YTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC--RNNYKWYKFDDSDVSEISASKVKS- 90
                  + V Y+L+AV  H G   +GHY AY   ++  +W K++D  V+E S  +V+  
Sbjct: 153 LEFPQIIQQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERD 212

Query: 91  -------PAAYILFYM 99
                  P+AY L Y+
Sbjct: 213 SFGGGRNPSAYCLMYI 228

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 228

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 14  WC--RKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN- 69
           WC      T  +  V N    +      S    Y L AV  H G ++ +GHY  + R N 
Sbjct: 655 WCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNG 714

Query: 70  ---YKWYKFDDSDVSEISASKVKSPAAYILFY 98
              +KW   +D      S+ +V     YI  +
Sbjct: 715 KDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLF 746

Length = 749

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 41  RDVRYDLYAVSNHYGTMESGHYTAYCR--NNYKWYKFDDSDVSEISASKV 88
           +   Y L+AV  H G   SGHY  Y +      W K++D  V+ + AS+V
Sbjct: 277 KSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEV 326

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG1865|consensus	545		100.0
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.97
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.97
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.97
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.97
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.97
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.97
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.97
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.96
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.96
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.96
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.96
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.96
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.95
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.95
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.95
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.95
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.95
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.93
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.93
KOG1867|consensus	492		99.93
KOG1870|consensus	842		99.93
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.91
KOG1866|consensus	944		99.91
KOG1868|consensus	653		99.91
KOG4598|consensus	1203		99.9
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.87
KOG1873|consensus	877		99.86
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.85
KOG1864|consensus	587		99.83
KOG0944|consensus	763		99.75
KOG1872|consensus	473		99.66
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.64
KOG1871|consensus	420		99.62
KOG1863|consensus	1093		99.59
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.47
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.37
KOG2026|consensus	442		99.07
KOG1275|consensus	1118		98.31
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	95.4
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	94.05

>KOG1865|consensus

Probab=100.00  E-value=8.2e-34  Score=214.48  Aligned_cols=99  Identities=37%  Similarity=0.651  Sum_probs=93.7

Q ss_pred             CEEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCC
Q psy10717          1 MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDS   78 (107)
Q Consensus         1 iL~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~   78 (107)
                      ||+||||||+. +...||.++|.|| |+|||.||+..+...+..|.|+|||+|.| +..+|||+||||.. |+||++||+
T Consensus       310 VLTi~LKRF~~-~~~gKI~K~I~fP-E~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS  387 (545)
T KOG1865|consen  310 VLTLHLKRFSN-GTGGKISKPVSFP-ETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDS  387 (545)
T ss_pred             eEEEeeehhcc-CcccccccccCCc-ccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCc
Confidence            79999999996 3345999999999 99999999998777899999999999999 89999999999999 999999999


Q ss_pred             ceeEeccccccCCCeEEEEeEEe
Q psy10717         79 DVSEISASKVKSPAAYILFYMSF  101 (107)
Q Consensus        79 ~V~~~~~~~v~~~~aYiLfY~r~  101 (107)
                      .|+.++.+.|++..||||||.|.
T Consensus       388 ~V~~~~~~~VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  388 EVTQSSIESVLSQQAYILFYARK  410 (545)
T ss_pred             eeeeccccceecccceEEEEEee
Confidence            99999999999999999999997

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.97  E-value=7.5e-32  Score=192.97  Aligned_cols=98  Identities=38%  Similarity=0.642  Sum_probs=87.0

Q ss_pred             CEEEEEeeeecC--CeeeccceeEEeCCCCeeCCcccccC-----CCCCeeEEEEEEEEEeCCCCCCEEEEEEEC-----
Q psy10717          1 MFDDDGHRFTSD--GWCRKKQTTVDFPVDNLNMSEYTVNS-----ESRDVRYDLYAVSNHYGTMESGHYTAYCRN-----   68 (107)
Q Consensus         1 iL~i~LkRF~~~--~~~~K~~~~v~fpl~~Ldl~~~~~~~-----~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~-----   68 (107)
                      +|+||||||...  ....|+++.|.|| +.|||++|+..+     ......|+|+|||+|.|+.++|||+|++|.     
T Consensus       152 ~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~  230 (279)
T cd02667         152 VLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQ  230 (279)
T ss_pred             eEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccc
Confidence            699999999922  2457999999999 799999999762     234689999999999997799999999997     


Q ss_pred             ------------------CCcEEEEcCCceeEeccccccCCCeEEEEeE
Q psy10717         69 ------------------NYKWYKFDDSDVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        69 ------------------~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~   99 (107)
                                        .+.||+|||+.|++++.+++.+.+||||||+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe  279 (279)
T cd02667         231 RLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE  279 (279)
T ss_pred             ccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence                              3799999999999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.97  E-value=2.9e-31  Score=191.48  Aligned_cols=98  Identities=32%  Similarity=0.502  Sum_probs=86.3

Q ss_pred             CEEEEEeeee-cC--CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECCCcEEEEc
Q psy10717          1 MFDDDGHRFT-SD--GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFD   76 (107)
Q Consensus         1 iL~i~LkRF~-~~--~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W~~~n   76 (107)
                      ||+||||||. ..  +...|+.++|.|| .+|||.++.......+..|+|+|||+|.| ++++|||+|++|..++|++||
T Consensus       191 vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fd  269 (300)
T cd02663         191 ILALHLKRFKYDEQLNRYIKLFYRVVFP-LELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFD  269 (300)
T ss_pred             eeEEEEEeEEeecccCCceecCceEecC-cEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEc
Confidence            6999999999 22  2356999999999 69999988655545578999999999999 589999999999999999999


Q ss_pred             CCceeEecccccc--------CCCeEEEEeE
Q psy10717         77 DSDVSEISASKVK--------SPAAYILFYM   99 (107)
Q Consensus        77 D~~V~~~~~~~v~--------~~~aYiLfY~   99 (107)
                      |+.|++++.++|.        +.+||||||+
T Consensus       270 D~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~  300 (300)
T cd02663         270 DETVEKIDENAVEEFFGDSPNQATAYVLFYQ  300 (300)
T ss_pred             CCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence            9999999998885        6899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.97  E-value=2.7e-31  Score=193.85  Aligned_cols=98  Identities=35%  Similarity=0.527  Sum_probs=84.4

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccC-------------------CCCCeeEEEEEEEEEeC-CC
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNS-------------------ESRDVRYDLYAVSNHYG-TM   57 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~-------------------~~~~~~Y~L~avv~H~G-~~   57 (107)
                      ||+||||||.   .++...|+.+.|.|| +.|||++++...                   ...+..|+|+|||+|.| ++
T Consensus       178 vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~  256 (327)
T cd02664         178 YLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSS  256 (327)
T ss_pred             hhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCC
Confidence            6999999998   334567999999999 799999887411                   12357999999999999 68


Q ss_pred             CCCEEEEEEECC----------------------CcEEEEcCCceeEeccccccC-------CCeEEEEeE
Q psy10717         58 ESGHYTAYCRNN----------------------YKWYKFDDSDVSEISASKVKS-------PAAYILFYM   99 (107)
Q Consensus        58 ~~GHY~~~~r~~----------------------~~W~~~nD~~V~~~~~~~v~~-------~~aYiLfY~   99 (107)
                      ++|||+||+|.+                      +.|++|||+.|++++.++|.+       .+||||||+
T Consensus       257 ~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~  327 (327)
T cd02664         257 ESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE  327 (327)
T ss_pred             CCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence            999999999974                      589999999999999999875       899999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.97  E-value=5e-31  Score=199.15  Aligned_cols=99  Identities=27%  Similarity=0.475  Sum_probs=88.0

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC---CCCeeEEEEEEEEEeCCC-CCCEEEEEEECC--CcEE
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE---SRDVRYDLYAVSNHYGTM-ESGHYTAYCRNN--YKWY   73 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~---~~~~~Y~L~avv~H~G~~-~~GHY~~~~r~~--~~W~   73 (107)
                      +|+||||||. .....+|+++.|.||++.|||.+|+..+.   ..+..|+|+|||+|.|+. ++|||+|++|..  ++||
T Consensus       335 vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~  414 (440)
T cd02669         335 YLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWF  414 (440)
T ss_pred             EEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEE
Confidence            6999999999 44556799999999964599999986432   346899999999999976 999999999975  8999


Q ss_pred             EEcCCceeEeccccccCCCeEEEEeE
Q psy10717         74 KFDDSDVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        74 ~~nD~~V~~~~~~~v~~~~aYiLfY~   99 (107)
                      +|||+.|+++++++|...+||||||+
T Consensus       415 ~fdD~~V~~v~~~~v~~~eaYll~Y~  440 (440)
T cd02669         415 EIQDLNVKEVLPQLIFLSESYIQIWE  440 (440)
T ss_pred             EEECCeeeEcCHHHhccCCceEEEeC
Confidence            99999999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.97  E-value=8.1e-31  Score=184.84  Aligned_cols=98  Identities=22%  Similarity=0.452  Sum_probs=83.1

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC----------------------CCCeeEEEEEEEEEeC-C
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE----------------------SRDVRYDLYAVSNHYG-T   56 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~----------------------~~~~~Y~L~avv~H~G-~   56 (107)
                      ||+||||||. ..+...|+++.|.|| +.|||++|+.+..                      .....|+|+|||+|.| +
T Consensus       101 vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s  179 (241)
T cd02670         101 CLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTS  179 (241)
T ss_pred             eEEEEEEccccCCCcceeCCcEECCC-CcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCC
Confidence            6999999999 445567999999999 7999999986531                      2356899999999999 6


Q ss_pred             CCCCEEEEEEECC-------------CcEEEEcCCceeEeccc------cccCCCeEEEEeE
Q psy10717         57 MESGHYTAYCRNN-------------YKWYKFDDSDVSEISAS------KVKSPAAYILFYM   99 (107)
Q Consensus        57 ~~~GHY~~~~r~~-------------~~W~~~nD~~V~~~~~~------~v~~~~aYiLfY~   99 (107)
                      +++|||+|++|.+             +.|++|||..|+.+...      .+.+++||||||+
T Consensus       180 ~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq  241 (241)
T cd02670         180 LETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ  241 (241)
T ss_pred             CCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence            8999999999987             48999999988876532      4568999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.97  E-value=1.1e-30  Score=190.21  Aligned_cols=98  Identities=35%  Similarity=0.612  Sum_probs=86.1

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--CcEEE
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--YKWYK   74 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--~~W~~   74 (107)
                      ||+||||||.   .++...|+++.|.|| +.|||++++......+..|+|+|||+|.| ++++|||+|++|.+  ++|++
T Consensus       200 iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~  278 (324)
T cd02668         200 TLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYK  278 (324)
T ss_pred             eEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEE
Confidence            6999999998   344567999999999 79999999876655678999999999999 68999999999986  79999


Q ss_pred             EcCCceeEeccccc---------------------cCCCeEEEEeE
Q psy10717         75 FDDSDVSEISASKV---------------------KSPAAYILFYM   99 (107)
Q Consensus        75 ~nD~~V~~~~~~~v---------------------~~~~aYiLfY~   99 (107)
                      |||+.|++++.+.+                     .+.+||||||+
T Consensus       279 fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~  324 (324)
T cd02668         279 FNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK  324 (324)
T ss_pred             EECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence            99999999976654                     36899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.97  E-value=1e-30  Score=188.23  Aligned_cols=94  Identities=36%  Similarity=0.535  Sum_probs=84.6

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--CcEEE
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--YKWYK   74 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--~~W~~   74 (107)
                      +|+||||||.   ..+...|+.+.|.|| ++|||++++..    +..|+|+|||+|.| ++++|||+|++|.+  ++|+.
T Consensus       199 vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~----~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~  273 (305)
T cd02657         199 YLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCTP----SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIK  273 (305)
T ss_pred             EEEEEEECCccccccCceeecCcEEECC-ceEecccccCC----CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEE
Confidence            6999999998   224466999999999 69999999873    57899999999999 68999999999998  89999


Q ss_pred             EcCCceeEeccccccC-------CCeEEEEeE
Q psy10717         75 FDDSDVSEISASKVKS-------PAAYILFYM   99 (107)
Q Consensus        75 ~nD~~V~~~~~~~v~~-------~~aYiLfY~   99 (107)
                      |||+.|+++++++|..       .+||||||+
T Consensus       274 fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~  305 (305)
T cd02657         274 FDDDKVSEVTEEDILKLSGGGDWHIAYILLYK  305 (305)
T ss_pred             EECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence            9999999999999863       699999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.96  E-value=1.5e-29  Score=183.70  Aligned_cols=98  Identities=45%  Similarity=0.748  Sum_probs=87.9

Q ss_pred             CEEEEEeeee-cC-CeeeccceeEEeCCCCeeCCccccc---------CCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC
Q psy10717          1 MFDDDGHRFT-SD-GWCRKKQTTVDFPVDNLNMSEYTVN---------SESRDVRYDLYAVSNHYGTMESGHYTAYCRNN   69 (107)
Q Consensus         1 iL~i~LkRF~-~~-~~~~K~~~~v~fpl~~Ldl~~~~~~---------~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~   69 (107)
                      +|+||||||. .. +...|+.+.|.|| ++|||.+++..         .......|+|.|||+|.|+.++|||+|++|.+
T Consensus       219 ~Lii~lkRf~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~  297 (328)
T cd02660         219 VLCFQLKRFEHSLNKTSRKIDTYVQFP-LELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG  297 (328)
T ss_pred             eeEEEEEeEEecCCCCCcCCCcEEeCC-CEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC
Confidence            6999999999 32 4457999999999 69999999874         22357899999999999988899999999999


Q ss_pred             -CcEEEEcCCceeEeccccccCCCeEEEEeE
Q psy10717         70 -YKWYKFDDSDVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        70 -~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~   99 (107)
                       ++|++|||+.|++++++++...+||||||.
T Consensus       298 ~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~  328 (328)
T cd02660         298 DGQWFKFDDAMITRVSEEEVLKSQAYLLFYH  328 (328)
T ss_pred             CCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence             999999999999999999999999999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.96  E-value=2.4e-29  Score=182.98  Aligned_cols=102  Identities=30%  Similarity=0.503  Sum_probs=88.5

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC-----------CCCeeEEEEEEEEEeCCCCCCEEEEEE
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----------SRDVRYDLYAVSNHYGTMESGHYTAYC   66 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----------~~~~~Y~L~avv~H~G~~~~GHY~~~~   66 (107)
                      ||+|||+||.   ..+...|+++.|.|| +.|||.+++..+.           .....|+|+|||+|.|+.++|||+|++
T Consensus       195 vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~v  273 (334)
T cd02659         195 VLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYI  273 (334)
T ss_pred             EEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEE
Confidence            6999999998   334567999999999 7999999986542           246789999999999998999999999


Q ss_pred             ECC--CcEEEEcCCceeEecccccc----------------------CCCeEEEEeEEecC
Q psy10717         67 RNN--YKWYKFDDSDVSEISASKVK----------------------SPAAYILFYMSFII  103 (107)
Q Consensus        67 r~~--~~W~~~nD~~V~~~~~~~v~----------------------~~~aYiLfY~r~~~  103 (107)
                      |..  +.|+.|||+.|+++++++|.                      +.+||||||+|++.
T Consensus       274 k~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~  334 (334)
T cd02659         274 KDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKSP  334 (334)
T ss_pred             ECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeCC
Confidence            986  99999999999999988884                      35799999999763

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.96  E-value=2.2e-29  Score=177.03  Aligned_cols=87  Identities=38%  Similarity=0.658  Sum_probs=79.1

Q ss_pred             CEEEEEeeee-cC-CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC---------
Q psy10717          1 MFDDDGHRFT-SD-GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN---------   69 (107)
Q Consensus         1 iL~i~LkRF~-~~-~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~---------   69 (107)
                      +|+||||||. .. +...|+++.|.|| +.|           ....|+|+|||+|.|+.++|||+|++|.+         
T Consensus       129 vLii~LkRF~~~~~~~~~K~~~~v~fp-~~l-----------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~  196 (240)
T cd02662         129 ILCIHLSRSVFDGRGTSTKNSCKVSFP-ERL-----------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPG  196 (240)
T ss_pred             EEEEEEEEEEEcCCCceeeeccEEECC-Ccc-----------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccc
Confidence            6999999999 33 5567999999999 677           26799999999999977999999999986         


Q ss_pred             -------------CcEEEEcCCceeEeccccc-cCCCeEEEEeE
Q psy10717         70 -------------YKWYKFDDSDVSEISASKV-KSPAAYILFYM   99 (107)
Q Consensus        70 -------------~~W~~~nD~~V~~~~~~~v-~~~~aYiLfY~   99 (107)
                                   +.||+|||+.|++++++++ .+++||||||+
T Consensus       197 ~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe  240 (240)
T cd02662         197 SFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE  240 (240)
T ss_pred             cccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence                         8999999999999999999 89999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.96  E-value=6.6e-29  Score=177.70  Aligned_cols=97  Identities=38%  Similarity=0.674  Sum_probs=88.7

Q ss_pred             CEEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCC
Q psy10717          1 MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDS   78 (107)
Q Consensus         1 iL~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~   78 (107)
                      +|+|||+||... ...|+.+.|.|| +.|||.+++..+......|+|.|||+|.| ++++|||+|++|.+ ++|++|||+
T Consensus       206 iL~i~l~Rf~~~-~~~Ki~~~v~f~-~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~  283 (304)
T cd02661         206 VLTIHLKRFSNF-RGGKINKQISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDS  283 (304)
T ss_pred             EEEEEEeccccC-CccccCCeEecC-CeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCC
Confidence            699999999955 456999999999 79999999987666688999999999999 55999999999986 999999999


Q ss_pred             ceeEeccccccCCCeEEEEeE
Q psy10717         79 DVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        79 ~V~~~~~~~v~~~~aYiLfY~   99 (107)
                      .|++++++++.+.+||||||.
T Consensus       284 ~V~~v~~~~v~~~~aYil~Y~  304 (304)
T cd02661         284 KVSPVSIETVLSQKAYILFYI  304 (304)
T ss_pred             eeEECCHHHhcCCCcEEEEeC
Confidence            999999999999999999993

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.96  E-value=1.2e-28  Score=172.57  Aligned_cols=87  Identities=34%  Similarity=0.620  Sum_probs=76.7

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||+||||||. ..+...|+++.|.|| ..|           ....|+|+|||+|.|++++|||+|++|..  ++|++|||
T Consensus       131 vL~i~LkRF~~~~~~~~Ki~~~v~FP-~~l-----------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD  198 (228)
T cd02665         131 VLTFELSRFEFNQGRPEKIHDKLEFP-QII-----------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYND  198 (228)
T ss_pred             hhEEEeEeeEEcCCccEECCEEEEee-Ccc-----------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEEC
Confidence            6999999999 445567999999999 466           14689999999999999999999999875  89999999


Q ss_pred             CceeEecccccc--------CCCeEEEEeE
Q psy10717         78 SDVSEISASKVK--------SPAAYILFYM   99 (107)
Q Consensus        78 ~~V~~~~~~~v~--------~~~aYiLfY~   99 (107)
                      +.|++++.+++.        ..+||||||.
T Consensus       199 ~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv  228 (228)
T cd02665         199 ISVTESSWEEVERDSFGGGRNPSAYCLMYI  228 (228)
T ss_pred             CeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence            999999998886        3589999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.95  E-value=3.7e-28  Score=168.43  Aligned_cols=99  Identities=49%  Similarity=0.887  Sum_probs=87.1

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccC-CCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEc
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNS-ESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFD   76 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~-~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~n   76 (107)
                      +|+|||+||. ......|+++.|.||.+.||+++++... .....+|+|.|||+|.|+.++|||+|++|..  ++|+.||
T Consensus       128 iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fn  207 (230)
T cd02674         128 VLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFD  207 (230)
T ss_pred             hhEeEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEc
Confidence            6999999999 4455679999999996679999885322 2347899999999999966999999999998  8999999


Q ss_pred             CCceeEeccccccCCCeEEEEeE
Q psy10717         77 DSDVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        77 D~~V~~~~~~~v~~~~aYiLfY~   99 (107)
                      |+.|++++.+++...+||||||+
T Consensus       208 D~~V~~i~~~~~~~~~~YlL~Y~  230 (230)
T cd02674         208 DSRVTKVSESSVVSSSAYILFYE  230 (230)
T ss_pred             CCeEEEcCHHHccCCCceEEEeC
Confidence            99999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.95  E-value=1e-27  Score=166.73  Aligned_cols=98  Identities=44%  Similarity=0.801  Sum_probs=82.6

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC---CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcE
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES---RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKW   72 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W   72 (107)
                      +|+|||+||.   .++...|+.+.|.||+++|||.+++..+..   ....|+|.|||+|.|+.++|||+|++|..  ++|
T Consensus       161 ~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W  240 (269)
T PF00443_consen  161 ILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKW  240 (269)
T ss_dssp             EEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEE
T ss_pred             eeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeE
Confidence            5899999995   344577999999999669999999987653   35899999999999988999999999988  469


Q ss_pred             EEEcCCceeEeccccccC---CCeEEEEe
Q psy10717         73 YKFDDSDVSEISASKVKS---PAAYILFY   98 (107)
Q Consensus        73 ~~~nD~~V~~~~~~~v~~---~~aYiLfY   98 (107)
                      +.|||+.|++++.+++..   .+||||||
T Consensus       241 ~~~dD~~v~~~~~~~v~~~~~~~~yll~Y  269 (269)
T PF00443_consen  241 YKFDDSRVTEVSWEEVIKSSNSTAYLLFY  269 (269)
T ss_dssp             EEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred             EEeeCCceEECCHHHHhhccCCceEEEeC
Confidence            999999999999999987   99999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.4e-28  Score=188.57  Aligned_cols=102  Identities=37%  Similarity=0.695  Sum_probs=94.4

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||+||||||+ ...++.|+++.|.||+..|||+.+...-.++.-.|+|+||=.|.|...+|||+||+|+.  ++||+|||
T Consensus       719 iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdD  798 (823)
T COG5560         719 ILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDD  798 (823)
T ss_pred             heeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCceEEecC
Confidence            7999999999 56677899999999999999999987765556899999999999999999999999996  89999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEec
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSFI  102 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~~  102 (107)
                      +.|+++++++.....||+|||+|+.
T Consensus       799 sritevdped~vtssaYvLFyrrk~  823 (823)
T COG5560         799 SRITEVDPEDSVTSSAYVLFYRRKS  823 (823)
T ss_pred             ccccccCccccccceeEEEEEEecC
Confidence            9999999999999999999999974

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.95  E-value=6.8e-28  Score=176.71  Aligned_cols=92  Identities=35%  Similarity=0.593  Sum_probs=79.5

Q ss_pred             CEEEEEeeee-cC------CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECCCcE
Q psy10717          1 MFDDDGHRFT-SD------GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKW   72 (107)
Q Consensus         1 iL~i~LkRF~-~~------~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W   72 (107)
                      ||+||||||. .+      +...|+++.|.|| ..|||.++.....  ...|+|+|||+|.| ++++|||+||+|    |
T Consensus       224 vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp-~~L~~~~~~~~~~--~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W  296 (332)
T cd02671         224 VITIHLKCFAANGSEFDCYGGLSKVNTPLLTP-LKLSLEEWSTKPK--NDVYRLFAVVMHSGATISSGHYTAYVR----W  296 (332)
T ss_pred             EEEEEeeeeccccccccccCCceecCccccCc-cccccccccCCCC--CCeEEEEEEEEEcCCCCCCCeEEEEEE----E
Confidence            6999999999 32      2356999999999 4899998875543  68999999999999 689999999999    9


Q ss_pred             EEEcCCceeEecccccc---------CCCeEEEEeE
Q psy10717         73 YKFDDSDVSEISASKVK---------SPAAYILFYM   99 (107)
Q Consensus        73 ~~~nD~~V~~~~~~~v~---------~~~aYiLfY~   99 (107)
                      ++|||+.|++++++++.         ..+||||||+
T Consensus       297 ~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~  332 (332)
T cd02671         297 LLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK  332 (332)
T ss_pred             EEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence            99999999999877664         4799999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.95  E-value=1.6e-27  Score=172.16  Aligned_cols=87  Identities=29%  Similarity=0.475  Sum_probs=78.3

Q ss_pred             CEEEEEeeeec--CCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC----CcEE
Q psy10717          1 MFDDDGHRFTS--DGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN----YKWY   73 (107)
Q Consensus         1 iL~i~LkRF~~--~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~----~~W~   73 (107)
                      +|+||||||..  +....|+...|.|| +.|           .+..|+|+|||+|.| ++++|||+|++|.+    ++|+
T Consensus       218 vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~  285 (311)
T cd02658         218 YLVINMKRFQLLENWVPKKLDVPIDVP-EEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWV  285 (311)
T ss_pred             eEEEEeEEEEecCCCceEeeccccccC-CcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEE
Confidence            69999999993  33456999999999 666           256899999999999 68999999999998    8999


Q ss_pred             EEcCCceeEeccccccCCCeEEEEeE
Q psy10717         74 KFDDSDVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        74 ~~nD~~V~~~~~~~v~~~~aYiLfY~   99 (107)
                      .|||+.|++++..++...+||||||+
T Consensus       286 ~fnD~~V~~~~~~~~~~~~~YilfY~  311 (311)
T cd02658         286 LFNDEKVVASQDPPEMKKLGYIYFYQ  311 (311)
T ss_pred             EecCceeEECCcccccCCcceEEEEC
Confidence            99999999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.93  E-value=5.4e-26  Score=160.75  Aligned_cols=90  Identities=24%  Similarity=0.448  Sum_probs=72.5

Q ss_pred             CEEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC---CcEEEEc
Q psy10717          1 MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN---YKWYKFD   76 (107)
Q Consensus         1 iL~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~---~~W~~~n   76 (107)
                      ||+||||||....   +....+..  ..+++.+++.    ....|+|.|||+|.| ++++|||+|++|..   ++||.||
T Consensus       149 vL~i~lkRf~~~~---~~~~~~~~--~~~~~~~~~~----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fn  219 (245)
T cd02673         149 CLSINLKRYKLRI---ATSDYLKK--NEEIMKKYCG----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCS  219 (245)
T ss_pred             hhEEeeEeeeecc---cccccccc--cccccccccC----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEee
Confidence            6999999997221   22222322  3567777764    256799999999999 68999999999984   7999999


Q ss_pred             CCceeEecccccc---CCCeEEEEeE
Q psy10717         77 DSDVSEISASKVK---SPAAYILFYM   99 (107)
Q Consensus        77 D~~V~~~~~~~v~---~~~aYiLfY~   99 (107)
                      |+.|+++++++|.   +.+||||||+
T Consensus       220 D~~V~~v~~~~v~~~~~~~aYiLFY~  245 (245)
T cd02673         220 DDEIRPVSKNDVSTNARSSGYLIFYD  245 (245)
T ss_pred             CceeeEcCHHHHhhccCCceEEEEEC
Confidence            9999999999997   5799999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.93  E-value=2.6e-25  Score=152.43  Aligned_cols=98  Identities=42%  Similarity=0.719  Sum_probs=85.9

Q ss_pred             CEEEEEeeee-cC-CeeeccceeEEeCCCCeeCCccccc------CCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717          1 MFDDDGHRFT-SD-GWCRKKQTTVDFPVDNLNMSEYTVN------SESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--   69 (107)
Q Consensus         1 iL~i~LkRF~-~~-~~~~K~~~~v~fpl~~Ldl~~~~~~------~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--   69 (107)
                      +|+|||+||. .. ....|++..|.|| ++|++..+...      .......|+|.|||+|.| +..+|||+|++|.+  
T Consensus       142 ~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~  220 (255)
T cd02257         142 VLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSD  220 (255)
T ss_pred             eeEEEeeceeeccccccccCCCeEeCC-CcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCC
Confidence            6999999999 33 4566999999999 79999988752      223478999999999999 45999999999998  


Q ss_pred             CcEEEEcCCceeEeccccc-----cCCCeEEEEeE
Q psy10717         70 YKWYKFDDSDVSEISASKV-----KSPAAYILFYM   99 (107)
Q Consensus        70 ~~W~~~nD~~V~~~~~~~v-----~~~~aYiLfY~   99 (107)
                      ++|++|||..|++++.+++     ...+||+|||+
T Consensus       221 ~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~  255 (255)
T cd02257         221 GKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE  255 (255)
T ss_pred             CceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence            8999999999999999998     58999999995

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1867|consensus

Probab=99.93  E-value=3.2e-26  Score=174.60  Aligned_cols=102  Identities=39%  Similarity=0.593  Sum_probs=90.1

Q ss_pred             CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCC-----CCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEE
Q psy10717          1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----SRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWY   73 (107)
Q Consensus         1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~   73 (107)
                      +|.+|||||.  ......|+++.|.|| ..|+|.+|+..+.     .++..|+|.|||+|.|+.++|||+||+|..+.|+
T Consensus       378 ~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~~~~~~  456 (492)
T KOG1867|consen  378 VLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQSGGWF  456 (492)
T ss_pred             eeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEeCCCcE
Confidence            6899999999  222233999999999 7999999988521     2478999999999999999999999999999999


Q ss_pred             EEcCCceeEeccccccCCCeEEEEeEEecC
Q psy10717         74 KFDDSDVSEISASKVKSPAAYILFYMSFII  103 (107)
Q Consensus        74 ~~nD~~V~~~~~~~v~~~~aYiLfY~r~~~  103 (107)
                      +|||+.|..+++++|.+..||+|||.+.-.
T Consensus       457 ~~dDs~v~~~s~~eVl~~~aylLFY~~~~~  486 (492)
T KOG1867|consen  457 KCDDSTVTKVSEEEVLSSQAYLLFYTQEQV  486 (492)
T ss_pred             EEcCeEEEEeeHHHhhhchhhheehhHHhh
Confidence            999999999999999999999999987643

>KOG1870|consensus

Probab=99.93  E-value=2.5e-26  Score=184.20  Aligned_cols=100  Identities=48%  Similarity=0.827  Sum_probs=93.3

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||+||||||+ ...+..|+.+.|.||+..||+++|+.....  ..|+|+||.+|.|.+.+|||+||+|+.  ++|+.|||
T Consensus       740 iLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdD  817 (842)
T KOG1870|consen  740 ILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDD  817 (842)
T ss_pred             eEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEecc
Confidence            7999999999 555667999999999999999999988753  899999999999999999999999995  99999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEec
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSFI  102 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~~  102 (107)
                      +.|.+++++++.+..||+|||+|++
T Consensus       818 s~v~~~~~~~i~t~~aY~Lfy~r~~  842 (842)
T KOG1870|consen  818 SSVSEVDEDEIDTEAAYVLFYRRLD  842 (842)
T ss_pred             ccCCCCChhhcccccceEEEEEecC
Confidence            9999999999999999999999974

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.91  E-value=2.4e-24  Score=154.07  Aligned_cols=92  Identities=17%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             CEEEEEeeeec-C-------CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717          1 MFDDDGHRFTS-D-------GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--   69 (107)
Q Consensus         1 iL~i~LkRF~~-~-------~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--   69 (107)
                      ||+||||||.. .       ....|+...|.|| +.+++......+......|+|+|||+|.| +.++|||+|++|.+  
T Consensus       162 VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~-~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~  240 (268)
T cd02672         162 VLVINLSVTNGEFDDINVVLPSGKVMQNKVSPK-AIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNE  240 (268)
T ss_pred             eEEEEEeccChhhcccCcceeEEEecCCeeccc-ccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCC
Confidence            69999999982 1       2345888999999 67777666555544568999999999999 45999999999983  


Q ss_pred             ----CcEEEEcCCceeEeccccccCCCeEEEEeE
Q psy10717         70 ----YKWYKFDDSDVSEISASKVKSPAAYILFYM   99 (107)
Q Consensus        70 ----~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~   99 (107)
                          ++||.|||..|+++++      .||||||+
T Consensus       241 ~~~~~~WylFND~~V~~vs~------~aYiLfY~  268 (268)
T cd02672         241 ESTHGRWYLFNDFLVTPVSE------LAYILLYQ  268 (268)
T ss_pred             CCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence                6899999999999988      99999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1866|consensus

Probab=99.91  E-value=6.6e-26  Score=176.01  Aligned_cols=104  Identities=32%  Similarity=0.545  Sum_probs=90.5

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC-----------------CCCeeEEEEEEEEEeCCCCCC
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----------------SRDVRYDLYAVSNHYGTMESG   60 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----------------~~~~~Y~L~avv~H~G~~~~G   60 (107)
                      ||.||||||.   ......|.+..+.|| ..|||.||+..+-                 ..+.+|+|.||++|+|.+.+|
T Consensus       290 vl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaG  368 (944)
T KOG1866|consen  290 VLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAG  368 (944)
T ss_pred             hheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCc
Confidence            6899999998   445566999999999 7999999997542                 257899999999999999999


Q ss_pred             EEEEEEECC-----CcEEEEcCCceeEecccccc--------------------CCCeEEEEeEEecCCc
Q psy10717         61 HYTAYCRNN-----YKWYKFDDSDVSEISASKVK--------------------SPAAYILFYMSFIIII  105 (107)
Q Consensus        61 HY~~~~r~~-----~~W~~~nD~~V~~~~~~~v~--------------------~~~aYiLfY~r~~~~~  105 (107)
                      ||++|++..     ++||+|||..|++++..++.                    ..+||||||+|+++..
T Consensus       369 HYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p  438 (944)
T KOG1866|consen  369 HYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIP  438 (944)
T ss_pred             chhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCC
Confidence            999999875     89999999999999877653                    4699999999998754

>KOG1868|consensus

Probab=99.91  E-value=4.8e-25  Score=171.78  Aligned_cols=104  Identities=42%  Similarity=0.671  Sum_probs=92.5

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||++||+||. ..+...|....|.||+..+|+.++.....+.+..|+|+||++|.|+..+|||+|+|+..  +.|+.|||
T Consensus       543 iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdD  622 (653)
T KOG1868|consen  543 ILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDD  622 (653)
T ss_pred             HHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecC
Confidence            5889999999 44577799999999988888888766666567779999999999999999999999886  88999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEecCC
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSFIII  104 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~~~~  104 (107)
                      +.|+.+...++.+..||||||+|.+..
T Consensus       623 s~Vs~~~~~~~~~s~aYIlFY~~~~~~  649 (653)
T KOG1868|consen  623 SEVSPISETDVGSSSAYILFYERLGIF  649 (653)
T ss_pred             eeeeccccccccCCCceEEEeecCCcc
Confidence            999999999998999999999998753

>KOG4598|consensus

Probab=99.90  E-value=2.4e-25  Score=172.64  Aligned_cols=103  Identities=28%  Similarity=0.523  Sum_probs=92.6

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC-------------------------------------
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES-------------------------------------   40 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~-------------------------------------   40 (107)
                      ||+||||||.   ++.++.|+++++.|| +.|||..|+..+.+                                     
T Consensus       258 ~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~  336 (1203)
T KOG4598|consen  258 LLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQ  336 (1203)
T ss_pred             eeEEeeecccccchheeeeeecccccCc-ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCccccc
Confidence            6999999998   667889999999999 99999999864320                                     


Q ss_pred             -----------------------------CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcCCceeEecccccc
Q psy10717         41 -----------------------------RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDDSDVSEISASKVK   89 (107)
Q Consensus        41 -----------------------------~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD~~V~~~~~~~v~   89 (107)
                                                   ++..|+|+||.+|+|++.+|||+||+++-  +.||.|||.+|.-+++.++.
T Consensus       337 s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~  416 (1203)
T KOG4598|consen  337 SPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIE  416 (1203)
T ss_pred             CcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHH
Confidence                                         57789999999999999999999999997  89999999999999998886


Q ss_pred             -------------CCCeEEEEeEEecCC
Q psy10717         90 -------------SPAAYILFYMSFIII  104 (107)
Q Consensus        90 -------------~~~aYiLfY~r~~~~  104 (107)
                                   +.+||||+|+|++..
T Consensus       417 ~sfgg~~~~~~~s~tnaymlmyr~id~k  444 (1203)
T KOG4598|consen  417 KSFGGHPSGWNQSNTNAYMLMYRRIDPK  444 (1203)
T ss_pred             HhhCCCCCCccccCcchhhhhhhhcCcc
Confidence                         478999999999865

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.4e-23  Score=163.69  Aligned_cols=102  Identities=27%  Similarity=0.501  Sum_probs=89.1

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC----CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--Cc
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE----SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YK   71 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~----~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~   71 (107)
                      ||.||||||.   ......|++++.+|| .++||.||...+.    +.+..|.|+||++|+|..+.|||+|+++..  |+
T Consensus       381 VlhlqLKRFeyDfe~d~mvKINDryEFP-~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~  459 (1089)
T COG5077         381 VLHLQLKRFEYDFERDMMVKINDRYEFP-LEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGR  459 (1089)
T ss_pred             HHHHHHHHhccccccCceeeecccccCc-chhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCC
Confidence            5789999998   445667999999999 6999999998654    345899999999999999999999999976  99


Q ss_pred             EEEEcCCceeEecccccc----------------------CCCeEEEEeEEecC
Q psy10717         72 WYKFDDSDVSEISASKVK----------------------SPAAYILFYMSFII  103 (107)
Q Consensus        72 W~~~nD~~V~~~~~~~v~----------------------~~~aYiLfY~r~~~  103 (107)
                      ||+|||+.|++++..+|+                      --+||||+|-|++.
T Consensus       460 WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~  513 (1089)
T COG5077         460 WYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM  513 (1089)
T ss_pred             ceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence            999999999999988875                      13789999999853

>KOG1873|consensus

Probab=99.86  E-value=6.8e-24  Score=164.91  Aligned_cols=100  Identities=34%  Similarity=0.519  Sum_probs=88.1

Q ss_pred             CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCC-----CCCeeEEEEEEEEEeCCCCCCEEEEEEECC----
Q psy10717          1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----SRDVRYDLYAVSNHYGTMESGHYTAYCRNN----   69 (107)
Q Consensus         1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~----   69 (107)
                      ||+||||||.  ..+...|.+..++|+ |.+|+.+|+....     .....|+|.|+|.|.|++..|||++|+|..    
T Consensus       749 VltihlKrf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~  827 (877)
T KOG1873|consen  749 VLTIHLKRFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLD  827 (877)
T ss_pred             eeeehHhhhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhh
Confidence            7999999998  222356999999999 9999999986543     134689999999999999999999999851    


Q ss_pred             ------------------CcEEEEcCCceeEeccccccCCCeEEEEeEEe
Q psy10717         70 ------------------YKWYKFDDSDVSEISASKVKSPAAYILFYMSF  101 (107)
Q Consensus        70 ------------------~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~  101 (107)
                                        ++||...|+.|.++++++|+..+||||||+|+
T Consensus       828 ~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI  877 (877)
T KOG1873|consen  828 LSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI  877 (877)
T ss_pred             ccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence                              78999999999999999999999999999995

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5.4e-21  Score=137.61  Aligned_cols=101  Identities=27%  Similarity=0.350  Sum_probs=73.5

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEe----CCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEEEE
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDF----PVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKF   75 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~f----pl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~   75 (107)
                      +||||++||. .-..+.|++++--.    |.|.++-..+-....-.+.+|.|+||++|.|+.++|||+++++.++.|+.|
T Consensus       308 ~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~~~~W~~~  387 (415)
T COG5533         308 VLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKRSGTWNVY  387 (415)
T ss_pred             eEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceecCceeEEeeeecCceEEe
Confidence            5999999998 33334566654332    211111111111111257899999999999999999999999999999999


Q ss_pred             cCCceeEeccc-cccCCCeEEEEeEEe
Q psy10717         76 DDSDVSEISAS-KVKSPAAYILFYMSF  101 (107)
Q Consensus        76 nD~~V~~~~~~-~v~~~~aYiLfY~r~  101 (107)
                      ||+.|++++.. +....++|||||+|.
T Consensus       388 dDs~vr~~~~~t~~~~pSsYilFY~r~  414 (415)
T COG5533         388 DDSQVRKGSRTTSGSHPSSYILFYTRS  414 (415)
T ss_pred             chhheeeccceecccCCcceEEEEEec
Confidence            99999998744 344678999999986

>KOG1864|consensus

Probab=99.83  E-value=1.1e-20  Score=146.66  Aligned_cols=99  Identities=32%  Similarity=0.508  Sum_probs=84.1

Q ss_pred             CEEEEEeeeecC---CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECCCc-EEEE
Q psy10717          1 MFDDDGHRFTSD---GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYK-WYKF   75 (107)
Q Consensus         1 iL~i~LkRF~~~---~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~-W~~~   75 (107)
                      +|+||||||+..   ....|+...|.+|+ +|.+.....+...+...|+|+|||+|.| +++.|||+|++|..+. |+.|
T Consensus       465 ~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~f  543 (587)
T KOG1864|consen  465 VLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLF  543 (587)
T ss_pred             eeeeehhcccccccccccccccccccccc-ceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceec
Confidence            689999999932   23459999999995 8999988887765568999999999999 9999999999999954 9999


Q ss_pred             cCCceeEecccccc---CCCeEEEEeEE
Q psy10717         76 DDSDVSEISASKVK---SPAAYILFYMS  100 (107)
Q Consensus        76 nD~~V~~~~~~~v~---~~~aYiLfY~r  100 (107)
                      ||+.|+.++.+++.   ..++|+++|..
T Consensus       544 dD~~V~~~s~~~v~~~~~~s~~~~~~~~  571 (587)
T KOG1864|consen  544 DDDNVEPISEEPVSEFTGSSGDTLFYYV  571 (587)
T ss_pred             ccccccccCcchhhhccCCCccceeeeE
Confidence            99999999998886   45666666654

>KOG0944|consensus

Probab=99.75  E-value=7.1e-18  Score=130.54  Aligned_cols=60  Identities=30%  Similarity=0.577  Sum_probs=52.6

Q ss_pred             CCeeEEEEEEEEEeC-CCCCCEEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717         41 RDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI  102 (107)
Q Consensus        41 ~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~  102 (107)
                      .+.+|+|+|+|+|.| ++.+|||+|++|..|+|+.|||++|- .+. +-....+||.||+|..
T Consensus       703 g~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~-~S~-~ppK~lgYvY~y~R~~  763 (763)
T KOG0944|consen  703 GPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA-ASQ-EPPKDLGYVYLYTRIA  763 (763)
T ss_pred             CCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh-hcc-CChhhcceEEEEEecC
Confidence            467899999999999 89999999999999999999999997 333 3347899999999964

>KOG1872|consensus

Probab=99.66  E-value=3.3e-17  Score=122.78  Aligned_cols=100  Identities=31%  Similarity=0.443  Sum_probs=86.3

Q ss_pred             EEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC--------------------------------------
Q psy10717          2 FDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES--------------------------------------   40 (107)
Q Consensus         2 L~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~--------------------------------------   40 (107)
                      |+||.-||.   ..+...|+-..|.||+ .||....|.++..                                      
T Consensus       309 lTvq~vrf~~k~k~~~~akil~~V~fP~-~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~  387 (473)
T KOG1872|consen  309 LTVQEVRFFSKAKIMVVAKILNAVNFPK-DLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPL  387 (473)
T ss_pred             ceEEEEEEEeccccchHHHHHHhccChh-hhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccc
Confidence            789999998   3444569999999995 9999999986531                                      


Q ss_pred             -----------C-CeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCCceeEecccccc-------CCCeEEEEeE
Q psy10717         41 -----------R-DVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDSDVSEISASKVK-------SPAAYILFYM   99 (107)
Q Consensus        41 -----------~-~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~~V~~~~~~~v~-------~~~aYiLfY~   99 (107)
                                 . ...|+|.||+.|.| +..+|||++++|.. +.|++|||..|+.+..+++.       ..+||+|.|.
T Consensus       388 e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk  467 (473)
T KOG1872|consen  388 EGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYK  467 (473)
T ss_pred             cchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeec
Confidence                       2 56799999999999 99999999999999 99999999999999988886       5799999997


Q ss_pred             Eec
Q psy10717        100 SFI  102 (107)
Q Consensus       100 r~~  102 (107)
                      -+.
T Consensus       468 ~~~  470 (473)
T KOG1872|consen  468 ARV  470 (473)
T ss_pred             ccc
Confidence            553

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.64  E-value=4.6e-16  Score=114.78  Aligned_cols=59  Identities=36%  Similarity=0.625  Sum_probs=53.8

Q ss_pred             CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcCCceeEecccccc------CCCeEEEEeE
Q psy10717         41 RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDDSDVSEISASKVK------SPAAYILFYM   99 (107)
Q Consensus        41 ~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD~~V~~~~~~~v~------~~~aYiLfY~   99 (107)
                      ....|+|+|||+|.|+.++|||++++|..  +.|++|||+.|++++.+++.      +++||||+|.
T Consensus       277 ~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv  343 (343)
T cd02666         277 KSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV  343 (343)
T ss_pred             CCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence            47789999999999988999999999986  79999999999999988876      4799999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1871|consensus

Probab=99.62  E-value=3.4e-16  Score=115.25  Aligned_cols=101  Identities=24%  Similarity=0.396  Sum_probs=87.3

Q ss_pred             CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCC------CCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717          1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSE------SRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--   69 (107)
Q Consensus         1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~------~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--   69 (107)
                      +|++|||||.  ..+..+|+.+.+.|| -++.++.-+....      .....|.|.|++.|.| ++..|||+..+-..  
T Consensus       305 vlilhlkrF~ye~tgg~~k~~K~i~~~-~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~  383 (420)
T KOG1871|consen  305 VLILHLKRFVYEKTGGARKLGKKIEYP-WTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVP  383 (420)
T ss_pred             hhhhhhhHHHHHhccchhhhchhhhcc-ceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeeccc
Confidence            5899999998  456677999999999 6898887665422      2467899999999999 89999999999887  


Q ss_pred             CcEEEEcCCceeEecccccc----CCCeEEEEeEEec
Q psy10717         70 YKWYKFDDSDVSEISASKVK----SPAAYILFYMSFI  102 (107)
Q Consensus        70 ~~W~~~nD~~V~~~~~~~v~----~~~aYiLfY~r~~  102 (107)
                      +.|+.+||..|..+..++|.    +.+||+|.|++.+
T Consensus       384 ~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d  420 (420)
T KOG1871|consen  384 SGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD  420 (420)
T ss_pred             CceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence            99999999999999999987    5789999999863

>KOG1863|consensus

Probab=99.59  E-value=3.2e-16  Score=128.99  Aligned_cols=103  Identities=34%  Similarity=0.460  Sum_probs=86.6

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCccccc--CC--CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--Cc
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVN--SE--SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YK   71 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~--~~--~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~   71 (107)
                      ||.|||+||.   ..+...|++....|| ..|+|.+++..  ..  .....|+|.||.+|.|..++|||+++++.+  ++
T Consensus       361 vl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~  439 (1093)
T KOG1863|consen  361 VLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGK  439 (1093)
T ss_pred             hhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhcccccccCccceeeecchhhcc
Confidence            6889999999   466777999999999 79999999763  11  123599999999998899999999999976  99


Q ss_pred             EEEEcCCceeEecccccc----------C------CCeEEEEeEEecCC
Q psy10717         72 WYKFDDSDVSEISASKVK----------S------PAAYILFYMSFIII  104 (107)
Q Consensus        72 W~~~nD~~V~~~~~~~v~----------~------~~aYiLfY~r~~~~  104 (107)
                      |++|||..|+.++..++.          .      ..||+|+|.|.+..
T Consensus       440 w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~  488 (1093)
T KOG1863|consen  440 WVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCE  488 (1093)
T ss_pred             ceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcH
Confidence            999999999999976654          1      23899999998753

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.47  E-value=2.1e-13  Score=98.43  Aligned_cols=79  Identities=25%  Similarity=0.540  Sum_probs=67.2

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC-------CCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-------SRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--   69 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-------~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--   69 (107)
                      ||.|.++|.. ...+..|....+.+| ..+++..++..+.       ....+|+|.|+|+|.| +.++|||+|++|.+  
T Consensus       204 VL~In~~~~~~~~~w~~~~~~~~~ip-~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~  282 (295)
T PF13423_consen  204 VLSINLNRYSEEEFWPKKNWLKIWIP-PSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPS  282 (295)
T ss_pred             EEEEEccCCCcccccccccCCceecc-eeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCC
Confidence            6999999998 434566999999999 6899998886542       3567999999999999 79999999999997  


Q ss_pred             --CcEEEEcCCce
Q psy10717         70 --YKWYKFDDSDV   80 (107)
Q Consensus        70 --~~W~~~nD~~V   80 (107)
                        ++||.|||..|
T Consensus       283 ~~~~W~lFNDflV  295 (295)
T PF13423_consen  283 DDSQWYLFNDFLV  295 (295)
T ss_pred             CCCcEEEECcEeC
Confidence              69999999654

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.5e-12  Score=99.35  Aligned_cols=60  Identities=30%  Similarity=0.511  Sum_probs=53.8

Q ss_pred             CeeEEEEEEEEEeC-CCCCCEEEEEEECC----CcEEEEcCCceeEeccccccCCCeEEEEeEEe
Q psy10717         42 DVRYDLYAVSNHYG-TMESGHYTAYCRNN----YKWYKFDDSDVSEISASKVKSPAAYILFYMSF  101 (107)
Q Consensus        42 ~~~Y~L~avv~H~G-~~~~GHY~~~~r~~----~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~  101 (107)
                      ...|.|.|||+|.| ++.+|||++|+|..    -+|+.+||+.+-.++.-++...+.||.||+|.
T Consensus       685 a~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~  749 (749)
T COG5207         685 AKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC  749 (749)
T ss_pred             cCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence            34599999999999 89999999999998    57999999999888777777899999999984

>KOG2026|consensus

Probab=99.07  E-value=2e-11  Score=90.28  Aligned_cols=98  Identities=21%  Similarity=0.319  Sum_probs=83.9

Q ss_pred             EEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC---CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEE
Q psy10717          2 FDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE---SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKF   75 (107)
Q Consensus         2 L~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~   75 (107)
                      |++|+|||. ++-+.+|+.|-|+||+..+|+.+......   .....|.|.|.++|-  ..-|||...++++  ++||.+
T Consensus       338 lifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~ei  415 (442)
T KOG2026|consen  338 LIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEI  415 (442)
T ss_pred             EEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEe
Confidence            899999999 66788899999999977777776654332   234789999999997  5779999999998  999999


Q ss_pred             cCCceeEeccccccCCCeEEEEeEEe
Q psy10717         76 DDSDVSEISASKVKSPAAYILFYMSF  101 (107)
Q Consensus        76 nD~~V~~~~~~~v~~~~aYiLfY~r~  101 (107)
                      +|-.|++..++-+.-+++||-+|++.
T Consensus       416 qdl~v~e~~~qmi~L~Es~iQiwe~~  441 (442)
T KOG2026|consen  416 QDLHVTERLPQMIFLKESFIQIWEKQ  441 (442)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHhcc
Confidence            99999999998888899999888874

>KOG1275|consensus

Probab=98.31  E-value=2.8e-06  Score=68.99  Aligned_cols=57  Identities=28%  Similarity=0.410  Sum_probs=52.0

Q ss_pred             CeeEEEEEEEEEeC-CCCCCEEEEEEECC----------CcEEEEcCCceeEecccccc-----CCCeEEEEe
Q psy10717         42 DVRYDLYAVSNHYG-TMESGHYTAYCRNN----------YKWYKFDDSDVSEISASKVK-----SPAAYILFY   98 (107)
Q Consensus        42 ~~~Y~L~avv~H~G-~~~~GHY~~~~r~~----------~~W~~~nD~~V~~~~~~~v~-----~~~aYiLfY   98 (107)
                      ...|+|.|+|+|.| +-+.+|.+++++..          .+||.|||-.|++++++++.     .+.|-||+|
T Consensus       788 ~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y  860 (1118)
T KOG1275|consen  788 AVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY  860 (1118)
T ss_pred             eEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence            48999999999999 67899999999874          48999999999999999886     689999999

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=95.40  E-value=0.057  Score=38.87  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=33.1

Q ss_pred             CCeeEEEEEEEEEeCCCCCCEEEEEEECC-CcEEEEcCCcee
Q psy10717         41 RDVRYDLYAVSNHYGTMESGHYTAYCRNN-YKWYKFDDSDVS   81 (107)
Q Consensus        41 ~~~~Y~L~avv~H~G~~~~GHY~~~~r~~-~~W~~~nD~~V~   81 (107)
                      ....|++.+||...-.  --|++++++++ |.|.+|||-+=-
T Consensus       215 eg~~Y~Vt~VIQY~~~--~~HFvtWi~~~dGsWLecDDLkgp  254 (275)
T PF15499_consen  215 EGCLYQVTSVIQYQAN--LNHFVTWIRDSDGSWLECDDLKGP  254 (275)
T ss_pred             cCeeEEEEEEEEEecc--CceeEEEEEcCCCCeEeeccCCCc
Confidence            4678999999988764  47999999999 999999997643

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.05  E-value=0.081  Score=36.22  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=25.6

Q ss_pred             EeC--CCCCCEEEEEEECCCcEEEEcCCceeEeccc
Q psy10717         53 HYG--TMESGHYTAYCRNNYKWYKFDDSDVSEISAS   86 (107)
Q Consensus        53 H~G--~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~   86 (107)
                      |.|  --..||.+.+++..+.||.+||+.+.+.++.
T Consensus       130 ~agi~~~g~~Havfa~~ts~gWy~iDDe~~y~~tPd  165 (193)
T PF05408_consen  130 HAGIFLKGQEHAVFACVTSDGWYAIDDEDFYPWTPD  165 (193)
T ss_dssp             EEEEEEESTTEEEEEEEETTCEEEEETTEEEE----
T ss_pred             hhHheecCCcceEEEEEeeCcEEEecCCeeeeCCCC
Confidence            455  2357999999999999999999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		6e-22
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		6e-22
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		1e-21
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		5e-16
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		5e-16
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		7e-16
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		9e-16
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		2e-15
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		2e-15
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		2e-15
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		5e-11
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		5e-11
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		6e-11
1vjv_A	415	Crystal Structure Of Ubiquitin Carboxyl-terminal Hy		4e-05

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 3/97 (3%)
Query: 8   RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 299 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 358
Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
           +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 359 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 3/97 (3%)
Query: 8   RFTSDG-WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ DG W +K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 299 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 358
Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101
           +N    +W+KFDD +VS+IS S VKS AAYILFY S 
Sbjct: 359 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ + + R K  T V+FP+  LNMSE+  N  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 262 RFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321
Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS+VS  S  ++ + AAY+LFY
Sbjct: 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFY 355

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYK 74
           K  T V+FP+ +L++ E+   + +  V Y+LYAVSNH GT   GHYTAYCR+    +W+ 
Sbjct: 283 KLTTFVNFPLRDLDLREFASENTNHAV-YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHT 341
Query: 75  FDDSDVSEISASKVKSPAAYILFY 98
           F+DS V+ +S+S+V++  AY+LFY
Sbjct: 342 FNDSSVTPMSSSQVRTSDAYLLFY 365

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYK 74
           K  T V+FP+ +L++ E+   + +  V Y+LYAVSNH GT   GHYTAYCR+    +W+ 
Sbjct: 276 KLTTFVNFPLRDLDLREFASENTNHAV-YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHT 334
Query: 75  FDDSDVSEISASKVKSPAAYILFY 98
           F+DS V+ +S+S+V++  AY+LFY
Sbjct: 335 FNDSSVTPMSSSQVRTSDAYLLFY 358

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYK 74
           K  T V+FP+ +L++ E+   + +  V Y+LYAVSNH GT   GHYTAYCR+    +W+ 
Sbjct: 257 KLTTFVNFPLRDLDLREFASENTNHAV-YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHT 315
Query: 75  FDDSDVSEISASKVKSPAAYILFY 98
           F+DS V+ +S+S+V++  AY+LFY
Sbjct: 316 FNDSSVTPMSSSQVRTSDAYLLFY 339

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYK 74
           K  T V+FP+ +L++ E+   + +  V Y+LYAVSNH GT   GHYTAYCR+    +W+ 
Sbjct: 257 KLTTFVNFPLRDLDLREFASENTNHAV-YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHT 315
Query: 75  FDDSDVSEISASKVKSPAAYILFY 98
           F+DS V+ +S+S+V++  AY+LFY
Sbjct: 316 FNDSSVTPMSSSQVRTSDAYLLFY 339

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 7   HRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAY 65
           +RF+ S G  +K    VDFP+  L++ ++  +     V Y LYA+ NH G++  GHYTA 
Sbjct: 269 NRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPV-YQLYALCNHSGSVHYGHYTAL 327
Query: 66  CRNNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           CR    W+ ++DS VS +S ++V S   Y+LFY
Sbjct: 328 CRCQTGWHVYNDSRVSPVSENQVASSEGYVLFY 360

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 7   HRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAY 65
           +RF+ S G  +K    VDFP+  L++ ++  +     V Y LYA+ NH G++  GHYTA 
Sbjct: 275 NRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPV-YQLYALCNHSGSVHYGHYTAL 333
Query: 66  CRNNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           CR    W+ ++DS VS +S ++V S   Y+LFY
Sbjct: 334 CRCQTGWHVYNDSRVSPVSENQVASSEGYVLFY 366

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 7   HRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAY 65
           +RF+ S G  +K    VDFP+  L++ ++  +     V Y LYA+ NH G++  GHYTA 
Sbjct: 256 NRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPV-YQLYALCNHSGSVHYGHYTAL 314
Query: 66  CRNNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           CR    W+ ++DS VS +S ++V S   Y+LFY
Sbjct: 315 CRCQTGWHVYNDSRVSPVSENQVASSEGYVLFY 347

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 12  DGWCRKKQTTVDFPVDNLNMSEY---------TVNSESRDVRYDLYAVSNHYGTMESGHY 62
           +G  RK    ++FP   LNM  Y         + N +  D+ Y+L  + +H GT+  GHY
Sbjct: 375 NGSNRKLDDFIEFPT-YLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 433
Query: 63  TAYCR-NNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
            A+C+ +  +W+KF+DS VS IS  +V    AY+LFY
Sbjct: 434 IAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 12  DGWCRKKQTTVDFPVDNLNMSEY---------TVNSESRDVRYDLYAVSNHYGTMESGHY 62
           +G  RK    ++FP   LNM  Y         + N +  D+ Y+L  + +H GT+  GHY
Sbjct: 375 NGSNRKLDDFIEFPT-YLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 433
Query: 63  TAYCR-NNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
            A+C+ +  +W+KF+DS VS IS  +V    AY+LFY
Sbjct: 434 IAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 12  DGWCRKKQTTVDFPVDNLNMSEY---------TVNSESRDVRYDLYAVSNHYGTMESGHY 62
           +G  RK    ++FP   LNM  Y         + N +  D+ Y+L  + +H GT+  GHY
Sbjct: 370 NGSNRKLDDFIEFPT-YLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 428
Query: 63  TAYCR-NNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
            A+C+ +  +W+KF+DS VS IS  +V    AY+LFY
Sbjct: 429 IAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 465

>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 45  YDLYAVSNHYGT-MESGHYTAYCRNNY---KWYKFDDSDVSEISASKVKSPA-------A 93
           Y+L  V  H G   ESGHY A+ R+     KWYKF+D  VS +   K++S A       A
Sbjct: 346 YNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSA 405
Query: 94  YILFYMSF 101
            IL Y  F
Sbjct: 406 LILXYKGF 413

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	5e-35
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	1e-34
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	5e-33
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	5e-32
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	7e-32
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	6e-21
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	1e-19
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	8e-19
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	4e-17
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	5e-11

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score =  121 bits (306), Expect = 5e-35
 Identities = 50/94 (53%), Positives = 62/94 (65%), Gaps = 3/94 (3%)

Query: 8   RFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ +  W  K  T V+FP+  LNMSE+  N  +R   YDL AVSNHYG M  GHYTAY 
Sbjct: 262 RFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321

Query: 67  RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  N KWY FDDS+VS  S  ++ + AAY+LFY
Sbjct: 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFY 355

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score =  120 bits (303), Expect = 1e-34
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+       K  T V+FP+ +L++ E+  +  +    Y+LYAVSNH GT   GHYTAYC
Sbjct: 247 RFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYC 305

Query: 67  RNNY--KWYKFDDSDVSEISASKVKSPAAYILFY 98
           R+    +W+ F+DS V+ +S+S+V++  AY+LFY
Sbjct: 306 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 339

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  117 bits (294), Expect = 5e-33
 Identities = 51/94 (54%), Positives = 74/94 (78%), Gaps = 3/94 (3%)

Query: 8   RFTSDGWCRKK-QTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF+ DG  ++K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ GHYTAYC
Sbjct: 299 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 358

Query: 67  RNNYK--WYKFDDSDVSEISASKVKSPAAYILFY 98
           +N  +  W+KFDD +VS+IS S VKS AAYILFY
Sbjct: 359 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score =  115 bits (289), Expect = 5e-32
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 13/104 (12%)

Query: 8   RF--TSDGWCRKKQTTVDFPVDNLNMSEYTVNSESR---------DVRYDLYAVSNHYGT 56
           RF    +G  RK    ++FP   LNM  Y    E           D+ Y+L  + +H GT
Sbjct: 369 RFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT 427

Query: 57  MESGHYTAYCRN-NYKWYKFDDSDVSEISASKVKSPAAYILFYM 99
           +  GHY A+C+    +W+KF+DS VS IS  +V    AY+LFY 
Sbjct: 428 VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYT 471

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score =  113 bits (284), Expect = 7e-32
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 8   RFTSD-GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
           RF++  G  +K    VDFP+  L++ ++  + ++    Y LYA+ NH G++  GHYTA C
Sbjct: 257 RFSASRGSIKKSSVGVDFPLQRLSLGDF-ASDKAGSPVYQLYALCNHSGSVHYGHYTALC 315

Query: 67  RNNYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           R    W+ ++DS VS +S ++V S   Y+LFY
Sbjct: 316 RCQTGWHVYNDSRVSPVSENQVASSEGYVLFY 347

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 84.7 bits (209), Expect = 6e-21
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRN-NYKWYK 74
            K+++    V     S       +    YDL AV  H G +  SGHY ++ +    +W K
Sbjct: 300 DKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIK 359

Query: 75  FDDSDVSEISASKVKSPA-------AYILFY 98
           FDD  VS ++   +   +       AY+L Y
Sbjct: 360 FDDDKVSIVTPEDILRLSGGGDWHIAYVLLY 390

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 8   RFTSD--GWCRKKQTT-VDFPVDNLNMSEYTVNSESRD-VRYDLYAVSNHYGTMESGHYT 63
           RF  D       K     +FP + L + E+   ++ +D   Y L+AV  H G    GHY 
Sbjct: 201 RFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYV 259

Query: 64  AYCR--NNYKWYKFDDSDVSEISASKV---------------KSPAAYILFYM 99
            Y     + KW KFDD  VS  +  +                    AY+L Y+
Sbjct: 260 VYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI 312

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 78.9 bits (194), Expect = 8e-19
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 8   RFTSD--GWCRKKQTT-VDFPVDNLNMSEYTVNSESRDV-RYDLYAVSNHYGTMESGHYT 63
           RF  D       K     +FP + L + E+   ++ +D   Y L+AV  H G    GHY 
Sbjct: 370 RFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYV 428

Query: 64  AYCR--NNYKWYKFDDSDVSEISASKV---------------KSPAAYILFYM 99
            Y     + KW KFDD  VS  +  +                    AY+L Y+
Sbjct: 429 VYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI 481

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 74.2 bits (181), Expect = 4e-17
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 37  NSESRDVRYDLYAVSNHYGT-MESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYI 95
                  +Y L+A  +H GT    GHY  + +   +W  ++D  V    + K      YI
Sbjct: 789 KVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCA--SEKPPKDLGYI 846

Query: 96  LFY 98
            FY
Sbjct: 847 YFY 849

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 56.8 bits (136), Expect = 5e-11
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 3   DDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGH 61
                ++ +     + +          +        E+    Y+L  V  H G   ESGH
Sbjct: 304 MTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGH 363

Query: 62  YTAYCRNNY---KWYKFDDSDVSEISASKV-------KSPAAYILFY 98
           Y A+ R+     KWYKF+D  VS +   K+       +S +A IL Y
Sbjct: 364 YQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMY 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	100.0
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	100.0
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	100.0
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	100.0
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.97
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.97
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.97
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.97
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.96
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.94
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.37
3mp2_A	211	Non-structural protein 3; papain-like protease, TG	83.75
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	81.22

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=209.56  Aligned_cols=105  Identities=47%  Similarity=0.741  Sum_probs=94.6

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||+||||||. .+....|+++.|.||++.|||++|+..+...+..|+|+|||+|.|++++|||+||+|..  ++|++|||
T Consensus       255 vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD  334 (367)
T 2y6e_A          255 ILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDD  334 (367)
T ss_dssp             EEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEET
T ss_pred             EEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECC
Confidence            6999999999 44456799999999965799999998776667899999999999999999999999996  89999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEecCCc
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSFIIII  105 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~~~~~  105 (107)
                      +.|+++++++|.+.+||||||+|++...
T Consensus       335 ~~V~~v~~~~v~~~~aYiLfY~r~~~~~  362 (367)
T 2y6e_A          335 SNVSLASEDQIVTKAAYVLFYQRRDDEF  362 (367)
T ss_dssp             TEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred             CCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence            9999999999999999999999998653

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=100.00  E-value=1.4e-33  Score=203.39  Aligned_cols=104  Identities=39%  Similarity=0.654  Sum_probs=92.5

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||+||||||. .+....|+.+.|.||++.|||.+++..+.. ...|+|+|||+|.|++++|||+||+|.+  ++|++|||
T Consensus       240 vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD  318 (348)
T 3nhe_A          240 ILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFND  318 (348)
T ss_dssp             EEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEET
T ss_pred             eEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCCC-CCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeC
Confidence            6999999999 444667999999999878999999976543 6789999999999998999999999985  89999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEecCCc
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSFIIII  105 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~~~~~  105 (107)
                      +.|+++++++|.+.+||||||+|++.+.
T Consensus       319 ~~V~~v~~~~v~~~~aY~LfY~r~~~~~  346 (348)
T 3nhe_A          319 SSVTPMSSSQVRTSDAYLLFYELASPPS  346 (348)
T ss_dssp             TEEEEECGGGTCCTTEEEEEEEECC---
T ss_pred             CCceECCHHHcCCCCceEEEEEecCCCC
Confidence            9999999999999999999999998754

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=100.00  E-value=1.4e-33  Score=208.83  Aligned_cols=102  Identities=50%  Similarity=0.948  Sum_probs=93.1

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      ||+||||||. .+....|+++.|.||++.|||.+|+..+......|+|+|||+|.|++++|||+||+|..  ++||+|||
T Consensus       292 vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD  371 (396)
T 2gfo_A          292 VLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDD  371 (396)
T ss_dssp             EEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEET
T ss_pred             EEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeC
Confidence            6999999999 55567799999999976799999998766557899999999999999999999999986  89999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEec
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSFI  102 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~~  102 (107)
                      +.|+++++++|.+.+||||||+|++
T Consensus       372 ~~V~~v~~~~v~~~~aYiLfY~r~~  396 (396)
T 2gfo_A          372 HEVSDISVSSVKSSAAYILFYTSLG  396 (396)
T ss_dssp             TEEEECCHHHHSCTTEEEEEEECC-
T ss_pred             CCeEECCHHHcCCCCceEEEEEEcC
Confidence            9999999999999999999999874

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=100.00  E-value=1e-33  Score=204.52  Aligned_cols=104  Identities=35%  Similarity=0.629  Sum_probs=90.3

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCc
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSD   79 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~   79 (107)
                      ||+||||||. .+....|+.+.|.||++.|||.+++.... ....|+|+|||+|.|++++|||+|++|.+++|++|||+.
T Consensus       250 vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~W~~~nD~~  328 (355)
T 3i3t_A          250 ILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSR  328 (355)
T ss_dssp             EEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEETTE
T ss_pred             heEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEEecCCCCCCeEEEEEEcCCeEEEEcCCC
Confidence            6999999999 55566799999999987799999987654 367999999999999999999999999999999999999


Q ss_pred             eeEeccccccCCCeEEEEeEEecCCc
Q psy10717         80 VSEISASKVKSPAAYILFYMSFIIII  105 (107)
Q Consensus        80 V~~~~~~~v~~~~aYiLfY~r~~~~~  105 (107)
                      |+++++++|.+.+||||||+|++.+.
T Consensus       329 V~~v~~~~v~~~~aYiLfY~r~~~~~  354 (355)
T 3i3t_A          329 VSPVSENQVASSEGYVLFYQLMQEPP  354 (355)
T ss_dssp             EEEECHHHHHTSCCSEEEEEEC----
T ss_pred             cEECCHHHcCCCCcEEEEEEeccCCC
Confidence            99999999999999999999998653

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.97  E-value=4.1e-32  Score=199.98  Aligned_cols=104  Identities=31%  Similarity=0.452  Sum_probs=87.6

Q ss_pred             CEEEEEeeeec---CCeeeccceeEEeCCCCeeCCcccccC---------------------------------------
Q psy10717          1 MFDDDGHRFTS---DGWCRKKQTTVDFPVDNLNMSEYTVNS---------------------------------------   38 (107)
Q Consensus         1 iL~i~LkRF~~---~~~~~K~~~~v~fpl~~Ldl~~~~~~~---------------------------------------   38 (107)
                      ||+||||||..   .+...|+.+.|.|| ..|||.+|+..+                                       
T Consensus       233 vL~i~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (404)
T 2ayn_A          233 YLTIQMVRFFYKEKESVNAKVLKDVKFP-LMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKY  311 (404)
T ss_dssp             SEEEEEECBCCCCSSSSCCBCCCCCBCC-SEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------
T ss_pred             ceEEEEEEEEEecccCceeccCceeccC-ceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccc
Confidence            79999999982   23467999999999 699999998641                                       


Q ss_pred             ----------CCCCeeEEEEEEEEEeC-CCCCCEEEEEEEC-CCcEEEEcCCceeEeccccccCCC-------eEEEEeE
Q psy10717         39 ----------ESRDVRYDLYAVSNHYG-TMESGHYTAYCRN-NYKWYKFDDSDVSEISASKVKSPA-------AYILFYM   99 (107)
Q Consensus        39 ----------~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~-~~~W~~~nD~~V~~~~~~~v~~~~-------aYiLfY~   99 (107)
                                ......|+|+|||+|.| ++++|||+||+|. .++||+|||+.|+++++++|....       ||||||+
T Consensus       312 e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~  391 (404)
T 2ayn_A          312 EPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYG  391 (404)
T ss_dssp             CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEE
T ss_pred             cccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEE
Confidence                      12347899999999999 7999999999998 599999999999999999998655       9999999


Q ss_pred             EecCCc
Q psy10717        100 SFIIII  105 (107)
Q Consensus       100 r~~~~~  105 (107)
                      |++...
T Consensus       392 r~~~~~  397 (404)
T 2ayn_A          392 PRRVEI  397 (404)
T ss_dssp             CC----
T ss_pred             ecCCCC
Confidence            987654

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.97  E-value=1.8e-31  Score=197.75  Aligned_cols=101  Identities=37%  Similarity=0.560  Sum_probs=88.0

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccC---------------------------------------
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNS---------------------------------------   38 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~---------------------------------------   38 (107)
                      ||+||||||.   .++...|+++.|.|| ..|||.+|+..+                                       
T Consensus       225 vL~i~LkRF~~~~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~  303 (415)
T 1vjv_A          225 FLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENV  303 (415)
T ss_dssp             EEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------C
T ss_pred             eeEEEEEEEEEeCCCCcchhhcCccCCC-cEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccc
Confidence            6999999998   234678999999999 699999998531                                       


Q ss_pred             ------------------------------------CCCCeeEEEEEEEEEeC-CCCCCEEEEEEEC---CCcEEEEcCC
Q psy10717         39 ------------------------------------ESRDVRYDLYAVSNHYG-TMESGHYTAYCRN---NYKWYKFDDS   78 (107)
Q Consensus        39 ------------------------------------~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~---~~~W~~~nD~   78 (107)
                                                          ......|+|+|||+|.| ++++|||+||+|.   .++||+|||+
T Consensus       304 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~  383 (415)
T 1vjv_A          304 MTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDD  383 (415)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETT
T ss_pred             cccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECC
Confidence                                                02347899999999999 8999999999999   3999999999


Q ss_pred             ceeEeccccccCCC-------eEEEEeEEec
Q psy10717         79 DVSEISASKVKSPA-------AYILFYMSFI  102 (107)
Q Consensus        79 ~V~~~~~~~v~~~~-------aYiLfY~r~~  102 (107)
                      .|+++++++|....       ||||||+|++
T Consensus       384 ~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~  414 (415)
T 1vjv_A          384 KVSVVEKEKIESLAGGGESDSALILMYKGFG  414 (415)
T ss_dssp             EEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred             cCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence            99999999987654       9999999975

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.97  E-value=1.1e-31  Score=195.97  Aligned_cols=102  Identities=28%  Similarity=0.442  Sum_probs=86.9

Q ss_pred             CEEEEEeeeec---CCeeeccceeEEeCCCCeeCCcccccCC-CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEE
Q psy10717          1 MFDDDGHRFTS---DGWCRKKQTTVDFPVDNLNMSEYTVNSE-SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYK   74 (107)
Q Consensus         1 iL~i~LkRF~~---~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~   74 (107)
                      ||+||||||..   +....|+++.|.|| +.|||.+|+.... ..+..|+|+|||+|.|++++|||+||+|..  ++|+.
T Consensus       194 vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~  272 (353)
T 1nb8_A          194 VLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK  272 (353)
T ss_dssp             EEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEE
T ss_pred             ceEEEEecEEEecccCceEecCcEEECC-CeeehhhhhcccCCCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEE
Confidence            69999999982   23467999999999 7999999997643 346899999999999988999999999974  89999


Q ss_pred             EcCCceeEecccccc---------------CCCeEEEEeEEecC
Q psy10717         75 FDDSDVSEISASKVK---------------SPAAYILFYMSFII  103 (107)
Q Consensus        75 ~nD~~V~~~~~~~v~---------------~~~aYiLfY~r~~~  103 (107)
                      |||+.|++++++++.               ..+||||||+|.+.
T Consensus       273 fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~  316 (353)
T 1nb8_A          273 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK  316 (353)
T ss_dssp             EETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred             EECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence            999999999988875               36899999999864

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.97  E-value=2.7e-31  Score=199.85  Aligned_cols=102  Identities=37%  Similarity=0.672  Sum_probs=91.9

Q ss_pred             CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCCC---------CCeeEEEEEEEEEeCCCCCCEEEEEEECC
Q psy10717          1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSES---------RDVRYDLYAVSNHYGTMESGHYTAYCRNN   69 (107)
Q Consensus         1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~---------~~~~Y~L~avv~H~G~~~~GHY~~~~r~~   69 (107)
                      ||+||||||.  .++...|+++.|.|| +.|||.+|+.....         ....|+|+|||+|.|++++|||+||+|.+
T Consensus       362 vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~  440 (476)
T 3mhs_A          362 VLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS  440 (476)
T ss_dssp             EEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT
T ss_pred             ceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECC
Confidence            6999999998  345567999999999 79999999976432         45789999999999999999999999986


Q ss_pred             -CcEEEEcCCceeEeccccccCCCeEEEEeEEecC
Q psy10717         70 -YKWYKFDDSDVSEISASKVKSPAAYILFYMSFII  103 (107)
Q Consensus        70 -~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~~  103 (107)
                       ++||+|||+.|+++++++|...+||||||+|++.
T Consensus       441 ~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~  475 (476)
T 3mhs_A          441 GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV  475 (476)
T ss_dssp             TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred             CCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence             8999999999999999999999999999999863

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.96  E-value=2.5e-30  Score=196.95  Aligned_cols=102  Identities=28%  Similarity=0.442  Sum_probs=89.0

Q ss_pred             CEEEEEeeeec---CCeeeccceeEEeCCCCeeCCcccccCC-CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEE
Q psy10717          1 MFDDDGHRFTS---DGWCRKKQTTVDFPVDNLNMSEYTVNSE-SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYK   74 (107)
Q Consensus         1 iL~i~LkRF~~---~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~   74 (107)
                      ||+||||||..   +....|+++.|.|| +.|||.+|+.... ..+..|+|+|||+|.|++++|||+||+|..  ++||+
T Consensus       363 vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~  441 (522)
T 2f1z_A          363 VLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK  441 (522)
T ss_dssp             EEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEE
T ss_pred             eEEEEEEeEEEcccCCcceEcCcEEeCC-CeecchhhhccccCCCCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEE
Confidence            69999999982   34567999999999 7999999997643 346899999999999988999999999964  89999


Q ss_pred             EcCCceeEeccccccC---------------CCeEEEEeEEecC
Q psy10717         75 FDDSDVSEISASKVKS---------------PAAYILFYMSFII  103 (107)
Q Consensus        75 ~nD~~V~~~~~~~v~~---------------~~aYiLfY~r~~~  103 (107)
                      |||+.|++++.+++..               .+||||||+|.+.
T Consensus       442 fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~  485 (522)
T 2f1z_A          442 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK  485 (522)
T ss_dssp             EETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred             EECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCc
Confidence            9999999999888763               6799999999864

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=185.01  Aligned_cols=57  Identities=28%  Similarity=0.609  Sum_probs=52.7

Q ss_pred             eEEEEEEEEEeC-CCCCCEEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717         44 RYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI  102 (107)
Q Consensus        44 ~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~  102 (107)
                      .|+|+|||+|.| +.++|||+||+|..++|++|||+.|+++  ++.....||||||+|++
T Consensus       796 ~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~  853 (854)
T 3ihp_A          796 KYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA  853 (854)
T ss_dssp             EEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred             eEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence            799999999999 8889999999999999999999999997  34567899999999987

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.37  E-value=5.2e-13  Score=98.06  Aligned_cols=68  Identities=22%  Similarity=0.299  Sum_probs=55.4

Q ss_pred             EEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCC------------------------------------------
Q psy10717          2 FDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSE------------------------------------------   39 (107)
Q Consensus         2 L~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~------------------------------------------   39 (107)
                      |+||+.||.   ...||-..|.||+ +||+.+++.++.                                          
T Consensus       170 LtVq~vRFg---KkaKIlrkV~fp~-eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~  245 (374)
T 2vhf_A          170 LIIQMPRFG---KDFKLFKKIFPSL-ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLH  245 (374)
T ss_dssp             EEEECCCCS---SSSSCCCCCBCCS-EECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTS
T ss_pred             eEEeeeccC---ccccccCCCCCcc-hhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhh
Confidence            899999993   3349999999995 999988875321                                          


Q ss_pred             --------------------------CCCeeEEEEEEEEEeCCCCCCEEEEEEECC---CcEEEEcC
Q psy10717         40 --------------------------SRDVRYDLYAVSNHYGTMESGHYTAYCRNN---YKWYKFDD   77 (107)
Q Consensus        40 --------------------------~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~---~~W~~~nD   77 (107)
                                                ++...|+|+|||+    +++|||+||||.+   ++|+.||-
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs  308 (374)
T 2vhf_A          246 PKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS  308 (374)
T ss_dssp             GGGTTCCCEECCC----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred             hhhhcccccccccCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence                                      0126799999999    8999999999983   99999975

>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}

Probab=83.75  E-value=1.9  Score=29.28  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             EEEEEeCCCCCCEEEEEEECCCcEEEEcCCceeEec
Q psy10717         49 AVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEIS   84 (107)
Q Consensus        49 avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~~~   84 (107)
                      +-++-.|+.++|||+.+....+  +.+|...+.+++
T Consensus       162 ~~~vF~G~~~~GHY~~~~~~~~--~~vDG~~~~~~~  195 (211)
T 3mp2_A          162 MHAVYTGTTQNGHYMVDDIEHG--YCVDGMGIKPLK  195 (211)
T ss_dssp             EEEEEESCTTTCEEEEEETTTT--EEEETTEEECCC
T ss_pred             eEEEEEcCCCCceEEEEecccc--eEEeCCceeEcc
Confidence            4455599999999999976544  788888887775

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=81.22  E-value=1.3  Score=28.46  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=25.4

Q ss_pred             CCCCEEEEEEECCCcEEEEcCCceeEeccc
Q psy10717         57 MESGHYTAYCRNNYKWYKFDDSDVSEISAS   86 (107)
Q Consensus        57 ~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~   86 (107)
                      ...+|-+-++-.+..||.+||+...+.++.
T Consensus       116 kg~eHAVFa~~TS~GWyaiDDe~fypwtPd  145 (167)
T 1qmy_A          116 KGQEHAVFACVTSNGWYAIDDEDFYPWTPD  145 (167)
T ss_dssp             ETTTEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred             cCCCceEEEEEccCceEEecccccccCCCC
Confidence            356899999988899999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-25
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	3e-22
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	3e-17
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	2e-16
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-11

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (235), Expect = 2e-25
 Identities = 51/101 (50%), Positives = 74/101 (73%), Gaps = 3/101 (2%)

Query: 1   MFDDDGHRFTSDGWCR-KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMES 59
           +      RF+ DG  + K QT+VDFP++NL++S+Y +  ++   +Y+L++VSNHYG ++ 
Sbjct: 245 VLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDG 304

Query: 60  GHYTAYCRN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
           GHYTAYC+N    +W+KFDD +VS+IS S VKS AAYILFY
Sbjct: 305 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 345

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (213), Expect = 3e-22
 Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 3/87 (3%)

Query: 14  WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYK 71
              K  T V+FP+ +L++ E+  +  +    Y+LYAVSNH GT   GHYTAYCR+    +
Sbjct: 248 RTSKLTTFVNFPLRDLDLREF-ASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE 306

Query: 72  WYKFDDSDVSEISASKVKSPAAYILFY 98
           W+ F+DS V+ +S+S+V++  AY+LFY
Sbjct: 307 WHTFNDSSVTPMSSSQVRTSDAYLLFY 333

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 3e-17
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 7   HRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAY 65
            ++ +     + +          +        E+    Y+L  V  H G   ESGHY A+
Sbjct: 290 EQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAF 349

Query: 66  CRNNY---KWYKFDDSDVSEISASKVKSPA-------AYILFY 98
            R+     KWYKF+D  VS +   K++S A       A IL Y
Sbjct: 350 IRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMY 392

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 17  KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNY-KWYK 74
            K+++    V     S       +    YDL AV  H G +  SGHY ++ +    +W K
Sbjct: 290 DKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIK 349

Query: 75  FDDSDVSEISASKVKSPA-------AYILFY 98
           FDD  VS ++   +   +       AY+L Y
Sbjct: 350 FDDDKVSIVTPEDILRLSGGGDWHIAYVLLY 380

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-11
 Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 17/103 (16%)

Query: 13  GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC--RNNY 70
               K     +FP                   Y L+AV  H G    GHY  Y   + + 
Sbjct: 209 DQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDG 268

Query: 71  KWYKFDDSDVSEISASKV---------------KSPAAYILFY 98
           KW KFDD  VS  +  +                    AY+L Y
Sbjct: 269 KWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY 311

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.97
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.96
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.96
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.96
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.94
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	81.19

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-32  Score=193.14  Aligned_cols=102  Identities=28%  Similarity=0.450  Sum_probs=89.5

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC-CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEE
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES-RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYK   74 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~   74 (107)
                      +|+|||+||.   ..+...|+++.|.|| +.|||++++..... ....|+|.|||+|.|++++|||+||+|.+  ++|++
T Consensus       194 vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~  272 (347)
T d1nbfa_         194 VLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK  272 (347)
T ss_dssp             EEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEE
T ss_pred             hheEeeeeeeeccccCcccccCceEeee-eeeccccccccccccCccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEE
Confidence            6999999998   445667999999999 79999999876543 46789999999999977999999999976  78999


Q ss_pred             EcCCceeEeccccccC---------------CCeEEEEeEEecC
Q psy10717         75 FDDSDVSEISASKVKS---------------PAAYILFYMSFII  103 (107)
Q Consensus        75 ~nD~~V~~~~~~~v~~---------------~~aYiLfY~r~~~  103 (107)
                      |||+.|+++++++|..               .+||||||+|.+.
T Consensus       273 fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~  316 (347)
T d1nbfa_         273 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK  316 (347)
T ss_dssp             EETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred             EECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCc
Confidence            9999999999999862               3699999999863

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=175.31  Aligned_cols=99  Identities=41%  Similarity=0.724  Sum_probs=88.0

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      +|+||++||. ......|..+.|.++.+.+||+++...+.. +..|+|.|||+|.|++++|||+||+|++  ++|++|||
T Consensus       234 ~l~i~~~r~~~~~~~~~~~~~~v~~~~~~~dl~~~~~~~~~-~~~Y~L~~vi~H~G~~~~GHY~~~ik~~~~~~W~~~nD  312 (336)
T d2hd5a1         234 ILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFND  312 (336)
T ss_dssp             EEEEEEECEECCSSCCEECCCCCBCCSSCEECGGGBSSSSC-CCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEET
T ss_pred             chhhhhhhhhhccccccccceeEeeccccccccccccCCCC-CCeEeEEEEEEEeCCCCCceEEEEEEcCCCCeEEEEEC
Confidence            5899999999 333445777888888789999999876653 6799999999999999999999999976  89999999


Q ss_pred             CceeEeccccccCCCeEEEEeEE
Q psy10717         78 SDVSEISASKVKSPAAYILFYMS  100 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r  100 (107)
                      +.|++++.+++.+.+||||||+|
T Consensus       313 ~~V~~v~~~~v~~~~aYiL~Y~r  335 (336)
T d2hd5a1         313 SSVTPMSSSQVRTSDAYLLFYEL  335 (336)
T ss_dssp             TEEEEECGGGSCCTTEEEEEEEE
T ss_pred             CceeECCHHHhccCCCEEEEEEc
Confidence            99999999999999999999998

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=180.45  Aligned_cols=100  Identities=31%  Similarity=0.468  Sum_probs=84.8

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccC---------------------------------------
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNS---------------------------------------   38 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~---------------------------------------   38 (107)
                      +|+|||+||.   ......|+.+.|.|| ..|||.+++.++                                       
T Consensus       223 ~L~i~l~R~~~~~~~~~~~K~~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T d2ayna1         223 YLTIQMVRFFYKEKESVNAKVLKDVKFP-LMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKY  301 (383)
T ss_dssp             SEEEEEECBCCCCSSSSCCBCCCCCBCC-SEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------
T ss_pred             eeeeeccceeecccCcceeecCcEEccC-CeeechhhcchhhhccccchhhhhhhhhhhhhccccCcccccccccccccc
Confidence            6999999998   233456999999999 799999988521                                       


Q ss_pred             ----------CCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCCceeEeccccccC-------CCeEEEEeE
Q psy10717         39 ----------ESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDSDVSEISASKVKS-------PAAYILFYM   99 (107)
Q Consensus        39 ----------~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~~V~~~~~~~v~~-------~~aYiLfY~   99 (107)
                                ......|+|.|||+|.| ++++|||+||+|.. +.|++|||+.|+++++++|.+       ..||||||+
T Consensus       302 ~~~~~~~~~~~~~~~~Y~L~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~  381 (383)
T d2ayna1         302 EPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYG  381 (383)
T ss_dssp             CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEE
T ss_pred             ccccccccccCCCCceEEEEEEEEEECCCCCCCCcEEEEECCCCeEEEEECCceEEeCHHHHHHhhCCCCCCceEEEEEE
Confidence                      01345799999999999 89999999999976 899999999999999999864       349999999


Q ss_pred             Ee
Q psy10717        100 SF  101 (107)
Q Consensus       100 r~  101 (107)
                      |+
T Consensus       382 r~  383 (383)
T d2ayna1         382 PR  383 (383)
T ss_dssp             CC
T ss_pred             EC
Confidence            85

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-29  Score=175.82  Aligned_cols=101  Identities=50%  Similarity=0.972  Sum_probs=92.0

Q ss_pred             CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717          1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD   77 (107)
Q Consensus         1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD   77 (107)
                      +|++|++||. .+....+..+...||+..+|+.+++..+......|+|.|||+|.|++++|||+||+|+.  ++|++|||
T Consensus       245 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~ik~~~~~~W~~~nD  324 (348)
T d2gfoa1         245 VLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDD  324 (348)
T ss_dssp             EEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEET
T ss_pred             cceeceeeeeccCccceeeccccccccccccccceecCCCCCCCCEEEEEEEEEeCCCCCceEEEEEEeCCcCeEEEEEC
Confidence            4789999999 55556688889999988899999998877778899999999999999999999999976  89999999


Q ss_pred             CceeEeccccccCCCeEEEEeEEe
Q psy10717         78 SDVSEISASKVKSPAAYILFYMSF  101 (107)
Q Consensus        78 ~~V~~~~~~~v~~~~aYiLfY~r~  101 (107)
                      +.|+++++++|.+++||||||+|.
T Consensus       325 ~~V~~v~~~~v~~~~aYlLfY~r~  348 (348)
T d2gfoa1         325 HEVSDISVSSVKSSAAYILFYTSL  348 (348)
T ss_dssp             TEEEECCHHHHSCTTEEEEEEECC
T ss_pred             CcCeECCHHHccCCCcEEEEEEeC
Confidence            999999999999999999999985

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.7e-28  Score=172.46  Aligned_cols=101  Identities=35%  Similarity=0.540  Sum_probs=85.0

Q ss_pred             CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC--------------------------------------
Q psy10717          1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE--------------------------------------   39 (107)
Q Consensus         1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~--------------------------------------   39 (107)
                      +|++||+||.   ......|+...+.|| ..+|+.+++....                                      
T Consensus       207 ~l~i~l~R~~~~~~~~~~~k~~~~~~~~-~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (397)
T d1vjva_         207 FLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENV  285 (397)
T ss_dssp             EEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------C
T ss_pred             eeEEEeeeeeeccccccccccCceeecC-cEEecccccchhhhhhhhhhhHhhhhhhhccchHHHHHhhhccCCcccccc
Confidence            4789999998   344567999999999 7999988754310                                      


Q ss_pred             -------------------------------------CCCeeEEEEEEEEEeC-CCCCCEEEEEEECC---CcEEEEcCC
Q psy10717         40 -------------------------------------SRDVRYDLYAVSNHYG-TMESGHYTAYCRNN---YKWYKFDDS   78 (107)
Q Consensus        40 -------------------------------------~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~---~~W~~~nD~   78 (107)
                                                           .....|+|.|||+|.| ++++|||+||+|++   ++|++|||+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~  365 (397)
T d1vjva_         286 MTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDD  365 (397)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETT
T ss_pred             ccchhhccchhcccchhccchhhhccccccccccccCCCCCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECC
Confidence                                                 0345699999999999 78999999999975   789999999


Q ss_pred             ceeEeccccccC-------CCeEEEEeEEec
Q psy10717         79 DVSEISASKVKS-------PAAYILFYMSFI  102 (107)
Q Consensus        79 ~V~~~~~~~v~~-------~~aYiLfY~r~~  102 (107)
                      .|+++++++|..       .+||||||+|++
T Consensus       366 ~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~  396 (397)
T d1vjva_         366 KVSVVEKEKIESLAGGGESDSALILMYKGFG  396 (397)
T ss_dssp             EEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred             CCEECCHHHHHHhhCCCCCCeEEEEEEEecC
Confidence            999999999874       469999999986

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=81.19  E-value=0.49  Score=28.61  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             CCEEEEEEECCCcEEEEcCCceeEeccc
Q psy10717         59 SGHYTAYCRNNYKWYKFDDSDVSEISAS   86 (107)
Q Consensus        59 ~GHY~~~~r~~~~W~~~nD~~V~~~~~~   86 (107)
                      .+|-+-++-.+..||.+||+...+.++.
T Consensus       118 ~eHAVFa~~TS~GWyaiDDe~fypwtPd  145 (156)
T d1qmya_         118 QEHAVFACVTSNGWYAIDDEDFYPWTPD  145 (156)
T ss_dssp             TTEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred             CCceEEEEEccCceEEecccccccCCCC
Confidence            6899999988899999999999987653