Psyllid ID: psy10730


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MEGTRPKGRPRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFHSK
ccccccccccccEEEEEEEEccccEEEEEEcccccccHHHHHcccccccccccEEEEEEEEcccccccccccEEEEEEcccccHHHHHHHHHHccccccEEEEccEEEccccccccccEEEEccccccccccccHHHHEEEEEEEccccc
cccccccccccccHHHHHHHHHHHHcEEEEEcccccccHHHHHcEEccccccccEEEEEEccccccccccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEccccHHHccccccEEEEEEccccEEccccccccccEEEEEEEEccc
megtrpkgrprnqYIDVIKSdigkglecyvctnqeanteKCLKTIKTCdqdedaclstinwgsppywsqgatkqyyvskSCASKKFCEEfkkknmpsctyiwyqdwkcseccsgdrcnyFVTLGgssvksntggsnvgtqVQQEFTFHSK
megtrpkgrprnqyiDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSsvksntggsnvgtqvqqeftfhsk
MEGTRPKGRPRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFHSK
*************YIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGG*************************
**********RNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFH**
*********PRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFHSK
*********PRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSSVKSNT**SNVGTQVQQEFTFHS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEGTRPKGRPRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFHSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
307197497 714 Low affinity cationic amino acid transpo 0.673 0.141 0.693 5e-43
332030638 713 Low affinity cationic amino acid transpo 0.68 0.143 0.686 3e-42
193657417149 PREDICTED: hypothetical protein LOC10015 0.78 0.785 0.641 1e-41
345481398 1220 PREDICTED: hypothetical protein LOC10011 0.66 0.081 0.676 1e-38
383847330 720 PREDICTED: low affinity cationic amino a 0.686 0.143 0.679 2e-37
380018645 724 PREDICTED: low affinity cationic amino a 0.646 0.133 0.701 1e-36
328791294 714 PREDICTED: low affinity cationic amino a 0.653 0.137 0.683 3e-36
340720464 722 PREDICTED: low affinity cationic amino a 0.666 0.138 0.67 4e-36
350412705 722 PREDICTED: low affinity cationic amino a 0.666 0.138 0.67 4e-36
170052451148 conserved hypothetical protein [Culex qu 0.773 0.783 0.606 2e-35
>gi|307197497|gb|EFN78731.1| Low affinity cationic amino acid transporter 2 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 70/101 (69%), Positives = 82/101 (81%)

Query: 23  GKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCA 82
           G  LECYVCTNQE N +KCL TIKTC+QD+D C + I WGS PYWSQGA KQ+YVSK C+
Sbjct: 19  GHALECYVCTNQEGNQDKCLNTIKTCEQDQDVCYTEIKWGSTPYWSQGAKKQFYVSKKCS 78

Query: 83  SKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNYFVTL 123
           +KK CE  ++ NMP CT+IWYQDWKCS+CC GDRCNY+V L
Sbjct: 79  TKKECERLQRNNMPDCTHIWYQDWKCSDCCQGDRCNYYVIL 119




Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030638|gb|EGI70326.1| Low affinity cationic amino acid transporter 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|193657417|ref|XP_001951621.1| PREDICTED: hypothetical protein LOC100158674 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345481398|ref|XP_001603047.2| PREDICTED: hypothetical protein LOC100119236 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383847330|ref|XP_003699307.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380018645|ref|XP_003693237.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Apis florea] Back     alignment and taxonomy information
>gi|328791294|ref|XP_393753.3| PREDICTED: low affinity cationic amino acid transporter 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340720464|ref|XP_003398657.1| PREDICTED: low affinity cationic amino acid transporter 2-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350412705|ref|XP_003489734.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|170052451|ref|XP_001862228.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873383|gb|EDS36766.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
FB|FBgn0031268153 cold "coiled" [Drosophila mela 0.686 0.673 0.615 4e-35
FB|FBgn0031268 cold "coiled" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 64/104 (61%), Positives = 78/104 (75%)

Query:    25 GLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASK 84
             GLECYVC+NQ  NTEKCL TIKTC+  E+ C + I WGS PY+S+GA KQYYVSK C +K
Sbjct:    25 GLECYVCSNQTGNTEKCLNTIKTCEPFENVCGTEIRWGSQPYFSEGALKQYYVSKRCMTK 84

Query:    85 KFCEEFKKKNMPS-CTYIWYQDWKCSECCSGDRCNYFVTLGGSS 127
             + C+  +K+ M   CT+IWY+DW C+ECC GDRCNYFV  G  S
Sbjct:    85 EQCQSKRKRYMQLYCTHIWYEDWACNECCKGDRCNYFVISGAPS 128


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       150   0.00087  104 3  11 22  0.37    32
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  187 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.43u 0.07s 14.50t   Elapsed:  00:00:06
  Total cpu time:  14.43u 0.07s 14.50t   Elapsed:  00:00:06
  Start:  Thu Aug 15 13:34:38 2013   End:  Thu Aug 15 13:34:44 2013


GO:0042060 "wound healing" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP
GO:0019991 "septate junction assembly" evidence=IDA;IMP
GO:0035633 "maintenance of blood-brain barrier" evidence=IDA
GO:0060856 "establishment of blood-brain barrier" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
cd0011779 cd00117, LU, Ly-6 antigen / uPA receptor -like dom 0.001
>gnl|CDD|238065 cd00117, LU, Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor Back     alignment and domain information
 Score = 35.5 bits (82), Expect = 0.001
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 26  LECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKK 85
           LECY CT    +T  C  T   C   +D CL+ +         + + +   V + CAS  
Sbjct: 1   LECYSCTGV--STSSC-STETNCPSPDDQCLTAVA-----TVIEESVRLSLVVRGCASD- 51

Query: 86  FCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
            C         S T++         CC  D CN
Sbjct: 52  -CPFTNVFGQLSITFLKVS------CCQEDLCN 77


Topology of these domains is similar to that of snake venom neurotoxins. Length = 79

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
cd0011779 LU Ly-6 antigen / uPA receptor -like domain; occur 99.22
PF0002177 UPAR_LY6: u-PAR/Ly-6 domain omitted due to poor si 99.02
smart0013479 LU Ly-6 antigen / uPA receptor -like domain. Three 98.95
cd0020664 snake_toxin Snake toxin domain, present in short a 98.47
PF0008763 Toxin_1: Snake toxin; InterPro: IPR003571 Snake to 98.23
PF0298883 PLA2_inh: Phospholipase A2 inhibitor; InterPro: IP 97.91
PF0106483 Activin_recp: Activin types I and II receptor doma 96.23
KOG2052|consensus 513 89.03
PF06211107 BAMBI: BMP and activin membrane-bound inhibitor (B 89.03
PF05444152 DUF753: Protein of unknown function (DUF753); Inte 83.34
>cd00117 LU Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor Back     alignment and domain information
Probab=99.22  E-value=6.9e-12  Score=84.79  Aligned_cols=75  Identities=32%  Similarity=0.619  Sum_probs=56.8

Q ss_pred             eEEeecCCCCCCHHHHhcccccccCCCCeeEeeecCCCCCeeccC--CceeeEEecccCCchhchHhhhccCCCcceeec
Q psy10730         26 LECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQG--ATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWY  103 (150)
Q Consensus        26 LeCYvC~~q~~N~ekCLntiktC~~~ed~ClT~I~wgs~py~s~G--a~kQ~yVSK~Ca~k~~C~~~~~~~m~~ct~iwy  103 (150)
                      |+||+|.++  |.+.|++ .++|++++|+|++.       ++...  ..+...+.|+|+.  .|+......++.-.++  
T Consensus         1 L~C~~C~~~--~~~~C~~-~~~C~~~~~~C~~~-------~~~~~~~~~~~~~~~rgC~~--~C~~~~~~~~~~~~~~--   66 (79)
T cd00117           1 LECYSCTGV--STSSCST-ETNCPSPDDQCLTA-------VATVIEESVRLSLVVRGCAS--DCPFTNVFGQLSITFL--   66 (79)
T ss_pred             CccCcCCCC--CCCCCCC-CCccCCCCCEeeEE-------EEEEEeeccccceEECcccC--CCCCCCccCccccceE--
Confidence            789999998  3468998 66999999999986       33322  2245579999999  5998877655322232  


Q ss_pred             ccccccCCCCCCCCC
Q psy10730        104 QDWKCSECCSGDRCN  118 (150)
Q Consensus       104 ~dw~c~eCC~gD~CN  118 (150)
                          .+.||++|+||
T Consensus        67 ----~~~CC~tD~CN   77 (79)
T cd00117          67 ----KVSCCQEDLCN   77 (79)
T ss_pred             ----eeeeCCCCccC
Confidence                58999999999



Topology of these domains is similar to that of snake venom neurotoxins.

>PF00021 UPAR_LY6: u-PAR/Ly-6 domain omitted due to poor similarity Back     alignment and domain information
>smart00134 LU Ly-6 antigen / uPA receptor -like domain Back     alignment and domain information
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides Back     alignment and domain information
>PF00087 Toxin_1: Snake toxin; InterPro: IPR003571 Snake toxins belong to a family of proteins [] which groups short and long neurotoxins, cytotoxins and short toxins, as well as a other miscellaneous venom peptides Back     alignment and domain information
>PF02988 PLA2_inh: Phospholipase A2 inhibitor; InterPro: IPR004126 Proteins in this entry inhibit basic phospholipase A2 isozymes in snake's venom [, ] Back     alignment and domain information
>PF01064 Activin_recp: Activin types I and II receptor domain; InterPro: IPR000472 Transforming growth factor-beta (TGF-beta) forms a family with other growth factors described in PDOC00223 from PROSITEDOC Back     alignment and domain information
>KOG2052|consensus Back     alignment and domain information
>PF06211 BAMBI: BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain; InterPro: IPR009345 This family consists of several eukaryotic BMP and activin membrane-bound inhibitor (BAMBI) proteins Back     alignment and domain information
>PF05444 DUF753: Protein of unknown function (DUF753); InterPro: IPR008472 This entry contains sequences which are repeated in several uncharacterised proteins from Drosophila melanogaster Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
2l03_A74 LY-6/neurotoxin-like protein 1; LYNX1, acetylcholi 99.15
2j8b_A79 CD59 glycoprotein; lipid-binding protein, lipid-bi 99.14
2h5f_A77 Denmotoxin; three-finger toxin, neurotoxin, snake 99.07
2h7z_B77 Irditoxin subunit B; three-finger toxin, neurotoxi 99.02
3neq_A66 Muscarinic M1-toxin1, muscarinic toxin 1; chimeric 98.91
1mr6_A68 Neurotoxin; venom; NMR {Bungarus multicinctus} SCO 98.77
1ywh_A313 Urokinase plasminogen activator surface receptor; 98.73
1cvo_A62 Cardiotoxin V; cytotoxin; NMR {Naja atra} SCOP: g. 98.7
1hc9_A74 Alpha-bungarotoxin; toxin/peptide, complex (toxin/ 98.68
2h7z_A75 Irditoxin subunit A; three-finger toxin, neurotoxi 98.68
1ff4_A65 Muscarinic toxin/acetylcholine receptor binding P; 98.65
1vyc_A65 Bucain, neurotoxin; snake neurotoxin; NMR {Bungaru 98.61
2jqp_A65 WEAK toxin 1; protein; NMR {Bungarus candidus} 98.61
1kba_A66 Kappa-bungarotoxin; 2.30A {Bungarus multicinctus} 98.6
1lsi_A66 LSIII; venom, multigene family, neurotoxin; NMR {L 98.58
1ntn_A72 Neurotoxin I; postsynaptic neurotoxin; 1.90A {Naja 98.56
1jgk_A66 Candoxin; beta sheet, snake venom protein, toxin; 98.49
3plc_A63 Beta-cardiotoxin OH-27; beta-sheet, novel cardioto 98.45
1ywh_A 313 Urokinase plasminogen activator surface receptor; 98.41
1f94_A63 Bucandin; three-finger snake presynaptic neurotoxi 98.28
2fd6_U276 Urokinase plasminogen activator surface receptor; 98.26
1ug4_A60 Cytotoxin 6, cardiotoxin VI; cobra, venom; 1.60A { 98.25
3hh7_A65 Muscarinic toxin-like protein 3 homolog; haditoxin 98.11
4aea_A71 Long neurotoxin 1; three-finger toxin, nicotinic a 98.08
3era_A62 Erabutoxin A; snake neurotoxin, venom, postsynapti 98.04
3laq_U277 UPAR, U-PAR, urokinase plasminogen activator surfa 98.04
3laq_U277 UPAR, U-PAR, urokinase plasminogen activator surfa 97.95
1vb0_A61 Cobrotoxin B; short-chain neurotoxin, three-finger 97.88
1ntx_A60 Alpha-neurotoxin; NMR {Dendroaspis polylepis polyl 97.65
3vts_A61 Cytotoxin 1; three finger toxin, venom toxin; 2.43 97.49
1tfs_A60 Toxin FS2; NMR {Dendroaspis polylepis polylepis} S 97.47
1drs_A59 Dendroaspin; cell adhesion protein; NMR {Dendroasp 97.24
2pjy_C79 TGF-beta receptor type-1; ternary complex, three f 97.1
1fas_A61 Fasciculin 1; toxin; 1.80A {Dendroaspis angusticep 97.07
2l5s_A88 TGF-beta receptor type-1; ALK5, transforming growt 96.96
2fd6_U 276 Urokinase plasminogen activator surface receptor; 96.86
2h62_C129 Bone morphogenetic protein receptor type IA; TGF-b 96.61
4fao_C106 Serine/threonine-protein kinase receptor R3; TGF-b 96.1
3evs_C119 Bone morphogenetic protein receptor type-1B; ligan 95.66
2jve_A91 PROD1; LY-6, three-finger snake toxin, UPAR, CD59, 88.32
>2l03_A LY-6/neurotoxin-like protein 1; LYNX1, acetylcholine receptor, endogenic neuromodulator, Thr toxins, signaling protein; NMR {Homo sapiens} Back     alignment and structure
Probab=99.15  E-value=7.4e-12  Score=83.62  Aligned_cols=73  Identities=27%  Similarity=0.544  Sum_probs=55.3

Q ss_pred             eeEEeecCCCCCCHHHHhcccccccCCCCeeEeeecCCCCCeeccCCceeeEEecccCCchhchHhhhccCCCcceeecc
Q psy10730         25 GLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQ  104 (150)
Q Consensus        25 aLeCYvC~~q~~N~ekCLntiktC~~~ed~ClT~I~wgs~py~s~Ga~kQ~yVSK~Ca~k~~C~~~~~~~m~~ct~iwy~  104 (150)
                      .|+||+|..  ++ ..|.+ +++|++++++|.|.       +|.. +.....|+|+|+..  |++......+. +++   
T Consensus         1 ~L~C~~C~~--~~-~~c~~-~~~C~~~~~~C~t~-------~~~~-~~~~~~v~rgC~~~--Cp~~~~~~~~~-~~~---   62 (74)
T 2l03_A            1 MLDCHVCAY--NG-DNCFN-PMRCPAMVAYCMTT-------RTYY-TPTRMKVSKSCVPR--CFETVYDGYSK-HAS---   62 (74)
T ss_dssp             CCEEECEEE--SS-SCCCC-EEECCTTCCEEEEE-------EEEE-ETTEEEEEEEEESC--CCCCCCCSSSC-CSE---
T ss_pred             CCEeeECCC--CC-CcCCC-CeEcCCCCCEEEEE-------EEEc-cCCCceEeccccCc--CcCCccccccc-cce---
Confidence            489999997  32 47887 99999999999997       5542 23345799999974  99877633333 222   


Q ss_pred             cccccCCCCCCCCC
Q psy10730        105 DWKCSECCSGDRCN  118 (150)
Q Consensus       105 dw~c~eCC~gD~CN  118 (150)
                         -+.||++|+||
T Consensus        63 ---~v~CC~tDlCN   73 (74)
T 2l03_A           63 ---TTSCCQYDLCN   73 (74)
T ss_dssp             ---EEEEECSTTTT
T ss_pred             ---EeEeCCCCCCC
Confidence               58999999999



>2j8b_A CD59 glycoprotein; lipid-binding protein, lipid-binding protein MAC, membrane, GPI-anchor, complement, lipoprotein; 1.15A {Homo sapiens} SCOP: g.7.1.3 PDB: 2ux2_A 2uwr_A 1cdq_A 1cdr_A* 1cds_A* 2ofs_A 1erg_A 1erh_A Back     alignment and structure
>2h5f_A Denmotoxin; three-finger toxin, neurotoxin, snake venom; 1.90A {Boiga dendrophila} SCOP: g.7.1.1 Back     alignment and structure
>2h7z_B Irditoxin subunit B; three-finger toxin, neurotoxin, snake venom; 1.50A {Boiga irregularis} SCOP: g.7.1.1 Back     alignment and structure
>3neq_A Muscarinic M1-toxin1, muscarinic toxin 1; chimeric muscarinic toxin, HM1-muscarinic receptor, snake to green mamba; 1.25A {Dendroaspis angusticeps} PDB: 2vlw_A* 3fev_A 4do8_A Back     alignment and structure
>1mr6_A Neurotoxin; venom; NMR {Bungarus multicinctus} SCOP: g.7.1.1 Back     alignment and structure
>1ywh_A Urokinase plasminogen activator surface receptor; UPAR, three-finger fold, protein-peptide complex, hydrolase; HET: ALC NAG FUC NDG BMA MAN; 2.70A {Homo sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 Back     alignment and structure
>1cvo_A Cardiotoxin V; cytotoxin; NMR {Naja atra} SCOP: g.7.1.1 PDB: 1kxi_A Back     alignment and structure
>1hc9_A Alpha-bungarotoxin; toxin/peptide, complex (toxin/peptide), acetylcholine receptor mimitope, alpha-bungarotoxin, 3- finger; 1.8A {Bungarus multicinctus} SCOP: g.7.1.1 PDB: 2qc1_A* 1abt_A 1bxp_A 1haa_A 1haj_A 1hc9_B 1hoy_A 1idg_A 1idh_A 1idi_A 1idl_A 1ik8_A 1ikc_A 1jbd_A 1kc4_A 1kfh_A 1kl8_A 1l4w_A 1ljz_A 1rgj_A ... Back     alignment and structure
>2h7z_A Irditoxin subunit A; three-finger toxin, neurotoxin, snake venom; 1.50A {Boiga irregularis} SCOP: g.7.1.1 Back     alignment and structure
>1ff4_A Muscarinic toxin/acetylcholine receptor binding P; three fingers motif; 1.50A {Dendroaspis angusticeps} SCOP: g.7.1.1 Back     alignment and structure
>1vyc_A Bucain, neurotoxin; snake neurotoxin; NMR {Bungarus candidus} SCOP: g.7.1.1 PDB: 2h8u_A Back     alignment and structure
>2jqp_A WEAK toxin 1; protein; NMR {Bungarus candidus} Back     alignment and structure
>1kba_A Kappa-bungarotoxin; 2.30A {Bungarus multicinctus} SCOP: g.7.1.1 PDB: 2nbt_A Back     alignment and structure
>1lsi_A LSIII; venom, multigene family, neurotoxin; NMR {Laticauda semifasciata} SCOP: g.7.1.1 Back     alignment and structure
>1ntn_A Neurotoxin I; postsynaptic neurotoxin; 1.90A {Naja oxiana} SCOP: g.7.1.1 PDB: 1w6b_A Back     alignment and structure
>1jgk_A Candoxin; beta sheet, snake venom protein, toxin; NMR {Bungarus candidus} SCOP: g.7.1.1 Back     alignment and structure
>3plc_A Beta-cardiotoxin OH-27; beta-sheet, novel cardiotoxin; 2.41A {Ophiophagus hannah} SCOP: g.7.1.1 Back     alignment and structure
>1ywh_A Urokinase plasminogen activator surface receptor; UPAR, three-finger fold, protein-peptide complex, hydrolase; HET: ALC NAG FUC NDG BMA MAN; 2.70A {Homo sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 Back     alignment and structure
>1f94_A Bucandin; three-finger snake presynaptic neurotoxin; 0.97A {Bungarus candidus} SCOP: g.7.1.1 PDB: 1ijc_A Back     alignment and structure
>2fd6_U Urokinase plasminogen activator surface receptor; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 PDB: 3bt2_U* 3bt1_U* 2i9b_E* 3u74_U* 3u73_U* Back     alignment and structure
>1ug4_A Cytotoxin 6, cardiotoxin VI; cobra, venom; 1.60A {Naja atra} PDB: 1h0j_A* 1i02_A 1xt3_A* 2bhi_A* 2crs_A 2crt_A 1cxn_A 1cxo_A 1tgx_A 1cb9_A 1ccq_A 1ffj_A 1chv_S 2ccx_A 1cre_A 1crf_A 1kbs_A 1kbt_A 1rl5_A 1zad_A ... Back     alignment and structure
>3hh7_A Muscarinic toxin-like protein 3 homolog; haditoxin, three finger toxin, snake venom, neurotoxin, nicotinic acetylcholine receptors; 1.55A {Ophiophagus hannah} SCOP: g.7.1.0 Back     alignment and structure
>4aea_A Long neurotoxin 1; three-finger toxin, nicotinic acetylcholine receptor; 1.94A {Naja kaouthia} SCOP: g.7.1.1 PDB: 1lxg_A 1lxh_A 1yi5_F 1ctx_A 2ctx_A 1txa_A 1txb_A Back     alignment and structure
>3era_A Erabutoxin A; snake neurotoxin, venom, postsynaptic neurotoxin; 1.70A {Laticauda semifasciata} SCOP: g.7.1.1 PDB: 2era_A Back     alignment and structure
>3laq_U UPAR, U-PAR, urokinase plasminogen activator surface receptor; ATF, supar, smupar, MATF, disulfide bond, EGF-LIK hydrolase, kringle; HET: NAG; 3.20A {Mus musculus} Back     alignment and structure
>3laq_U UPAR, U-PAR, urokinase plasminogen activator surface receptor; ATF, supar, smupar, MATF, disulfide bond, EGF-LIK hydrolase, kringle; HET: NAG; 3.20A {Mus musculus} Back     alignment and structure
>1vb0_A Cobrotoxin B; short-chain neurotoxin, three-finger toxin; HET: SO4; 0.92A {Naja atra} SCOP: g.7.1.1 PDB: 1onj_A* 1je9_A 1nor_A 1iq9_A 1nea_A 3nds_A 1cod_A 1coe_A 1v6p_A 1g6m_A 1qkd_A 1qke_A 5ebx_A 1era_A 1fra_A 3ebx_A 6ebx_A 1nxb_A Back     alignment and structure
>1ntx_A Alpha-neurotoxin; NMR {Dendroaspis polylepis polylepis} SCOP: g.7.1.1 Back     alignment and structure
>3vts_A Cytotoxin 1; three finger toxin, venom toxin; 2.43A {Hemachatus haemachatus} Back     alignment and structure
>1tfs_A Toxin FS2; NMR {Dendroaspis polylepis polylepis} SCOP: g.7.1.1 Back     alignment and structure
>1drs_A Dendroaspin; cell adhesion protein; NMR {Dendroaspis jamesoni kaimosae} SCOP: g.7.1.2 PDB: 2la1_A Back     alignment and structure
>2pjy_C TGF-beta receptor type-1; ternary complex, three finger toxin, cytokine-cytokine recep complex; 3.00A {Homo sapiens} PDB: 3kfd_I Back     alignment and structure
>1fas_A Fasciculin 1; toxin; 1.80A {Dendroaspis angusticeps} SCOP: g.7.1.1 PDB: 1fsc_A 1f8u_B* 1b41_B 1fss_B* 1ku6_B* 1mah_F* 2x8b_B* 1qm7_A Back     alignment and structure
>2l5s_A TGF-beta receptor type-1; ALK5, transforming growth factor beta, type I receptor, SIGN protein; NMR {Homo sapiens} Back     alignment and structure
>2fd6_U Urokinase plasminogen activator surface receptor; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 PDB: 3bt2_U* 3bt1_U* 2i9b_E* 3u74_U* 3u73_U* Back     alignment and structure
>2h62_C Bone morphogenetic protein receptor type IA; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.7.1.3 PDB: 2h64_B 3nh7_A 1rew_C 3qb4_B 2goo_B* 2qj9_D 2qja_C 2qjb_C 2k3g_A 1es7_B Back     alignment and structure
>4fao_C Serine/threonine-protein kinase receptor R3; TGF-beta, CTK, cystine knot, extracellular domain, signaling protein-signaling protein complex; HET: NAG; 3.36A {Homo sapiens} PDB: 2lcr_A Back     alignment and structure
>3evs_C Bone morphogenetic protein receptor type-1B; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Mus musculus} Back     alignment and structure
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d2j8ba177 CD59 {Human (Homo sapiens) [TaxId: 9606]} 98.14
d1mr6a_68 Bungarotoxin {Many-banded krait (Bungarus multicin 97.97
d1jgka_66 Candoxin {Malayan krait (Bungarus candidus) [TaxId 97.83
d1ff4a_65 Muscarinic toxin {Green mamba (Dendroaspis angusti 97.82
d1ntna_72 Neurotoxin I {Snake (Naja naja oxiana) [TaxId: 865 97.7
d1kxia_62 Cardiotoxin V {Taiwan cobra (Naja naja atra) [TaxI 97.41
d2h8ua165 Bucain {Malaysian krait (Bungarus candidus) [TaxId 97.41
d1v6pa_62 Cobrotoxin II (ct2) {Taiwan cobra (Naja naja atra) 97.39
d1hc9a_74 Bungarotoxin {Many-banded krait (Bungarus multicin 97.33
d3ebxa_62 Erabutoxin B (also neurotoxin B) {Sea snake (Latic 97.16
d2h7zb177 Irditoxin subunit B {Brown tree snake (Boiga irreg 97.14
d2h5fa175 Denmotoxin {Mangrove snake (Boiga dendrophila) [Ta 97.07
d1lsia_66 Long neurotoxin 1 (component LSIII) {Sea snake (La 97.04
d1tgxa_60 gamma-Cardiotoxin {Snake (Naja nigricollis) [TaxId 96.83
d1kbaa_66 Bungarotoxin {Many-banded krait (Bungarus multicin 96.53
d2fd6u287 Urokinase plasminogen activator surface receptor, 96.0
d1ntxa_60 alpha-Toxin {Black mamba (Dendroaspis polylepis po 95.98
d2h62c184 BMP receptor Ia ectodomain {Human (Homo sapiens) [ 95.63
d2ctxa_71 alpha-Cobratoxin {Cobra (Naja siamensis) [TaxId: 8 95.48
d1drsa_59 Dendroaspin {Dendroaspis jamesoni kaimosae [TaxId: 95.17
d2h7za175 Irditoxin subunit A {Brown tree snake (Boiga irreg 94.74
d1tfsa_60 FS2 toxin {Black mamba (Dendroaspis polylepis poly 93.35
d1fasa_61 Fasciculin {Green mamba (Dendroaspis angusticeps) 92.26
>d2j8ba1 g.7.1.3 (A:1-77) CD59 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Snake toxin-like
superfamily: Snake toxin-like
family: Extracellular domain of cell surface receptors
domain: CD59
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14  E-value=3.2e-07  Score=63.83  Aligned_cols=74  Identities=31%  Similarity=0.515  Sum_probs=53.5

Q ss_pred             eEEeecCCCCCCHHHHhcccccccCCCCeeEeeecCCCCCeeccCCceeeEEecccCCchhchHhhhccCCCcceeeccc
Q psy10730         26 LECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQD  105 (150)
Q Consensus        26 LeCYvC~~q~~N~ekCLntiktC~~~ed~ClT~I~wgs~py~s~Ga~kQ~yVSK~Ca~k~~C~~~~~~~m~~ct~iwy~d  105 (150)
                      |+||.|.+.++   .|-+ .++|..++|.||..-           +.+  -+.-+|-..+.|.-.+...|=.-..+    
T Consensus         1 L~CY~C~d~t~---~C~t-~~~C~~~~DaCL~~~-----------~g~--~~y~qCwk~sDC~~~~is~~f~~~~f----   59 (77)
T d2j8ba1           1 LQCYNCPNPTA---DCKT-AVNCSSDFDACLITK-----------AGL--QVYNKCWKFEHCNFNDVTTRLRENEL----   59 (77)
T ss_dssp             CEEECCSSCCT---TCCC-EEECCTTCCEEEEEE-----------ETT--EEEEEEECGGGCSHHHHHHHHTCSSC----
T ss_pred             CcccccCCCCC---cccc-ccccCCCCCeeEEEe-----------eCC--eEEeeeEeccCCCHHHHHHHhcccCc----
Confidence            78999999887   4766 899999999999752           122  24457888889986666532221221    


Q ss_pred             ccccCCCCCCCCCceeeccC
Q psy10730        106 WKCSECCSGDRCNYFVTLGG  125 (150)
Q Consensus       106 w~c~eCC~gD~CNy~visGa  125 (150)
                        -..||+.||||   .+++
T Consensus        60 --~y~CC~~dLCN---~~~~   74 (77)
T d2j8ba1          60 --TYYCCKKDLCN---FNEQ   74 (77)
T ss_dssp             --EEEEECSTTCC---CGGG
T ss_pred             --eeeccCccccC---chhh
Confidence              45899999999   6664



>d1mr6a_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus multicinctus), gamma-bungarotoxin [TaxId: 8616]} Back     information, alignment and structure
>d1jgka_ g.7.1.1 (A:) Candoxin {Malayan krait (Bungarus candidus) [TaxId: 92438]} Back     information, alignment and structure
>d1ff4a_ g.7.1.1 (A:) Muscarinic toxin {Green mamba (Dendroaspis angusticeps) [TaxId: 8618]} Back     information, alignment and structure
>d1ntna_ g.7.1.1 (A:) Neurotoxin I {Snake (Naja naja oxiana) [TaxId: 8657]} Back     information, alignment and structure
>d1kxia_ g.7.1.1 (A:) Cardiotoxin V {Taiwan cobra (Naja naja atra) [TaxId: 8656]} Back     information, alignment and structure
>d2h8ua1 g.7.1.1 (A:1-65) Bucain {Malaysian krait (Bungarus candidus) [TaxId: 92438]} Back     information, alignment and structure
>d1v6pa_ g.7.1.1 (A:) Cobrotoxin II (ct2) {Taiwan cobra (Naja naja atra) [TaxId: 8656]} Back     information, alignment and structure
>d1hc9a_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus multicinctus), Alpha-bungarotoxin [TaxId: 8616]} Back     information, alignment and structure
>d3ebxa_ g.7.1.1 (A:) Erabutoxin B (also neurotoxin B) {Sea snake (Laticauda semifasciata) [TaxId: 8631]} Back     information, alignment and structure
>d2h7zb1 g.7.1.1 (B:1-77) Irditoxin subunit B {Brown tree snake (Boiga irregularis) [TaxId: 92519]} Back     information, alignment and structure
>d2h5fa1 g.7.1.1 (A:3-77) Denmotoxin {Mangrove snake (Boiga dendrophila) [TaxId: 46286]} Back     information, alignment and structure
>d1lsia_ g.7.1.1 (A:) Long neurotoxin 1 (component LSIII) {Sea snake (Laticauda semifasciata) [TaxId: 8631]} Back     information, alignment and structure
>d1tgxa_ g.7.1.1 (A:) gamma-Cardiotoxin {Snake (Naja nigricollis) [TaxId: 8654]} Back     information, alignment and structure
>d1kbaa_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus multicinctus), kappa-bungarotoxin [TaxId: 8616]} Back     information, alignment and structure
>d2fd6u2 g.7.1.3 (U:189-275) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntxa_ g.7.1.1 (A:) alpha-Toxin {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]} Back     information, alignment and structure
>d2h62c1 g.7.1.3 (C:34-117) BMP receptor Ia ectodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctxa_ g.7.1.1 (A:) alpha-Cobratoxin {Cobra (Naja siamensis) [TaxId: 84476]} Back     information, alignment and structure
>d1drsa_ g.7.1.2 (A:) Dendroaspin {Dendroaspis jamesoni kaimosae [TaxId: 8619]} Back     information, alignment and structure
>d2h7za1 g.7.1.1 (A:1-75) Irditoxin subunit A {Brown tree snake (Boiga irregularis) [TaxId: 92519]} Back     information, alignment and structure
>d1tfsa_ g.7.1.1 (A:) FS2 toxin {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]} Back     information, alignment and structure
>d1fasa_ g.7.1.1 (A:) Fasciculin {Green mamba (Dendroaspis angusticeps) [TaxId: 8618]} Back     information, alignment and structure