Psyllid ID: psy10782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHcc
Coil and Loop (DISEMBL)
magrsyndlmqypvlpfilsdyksatldltdpksfrnlkkpmavqdkkneshyvnNYNYLAREMCDavggvnqepyhygshysnsgtVLHFLvrippftsmflns
Flexible Loop (DISEMBL)
magrsyndlmqYPVLPFILSDYKSATLdltdpksfrnlkkpmavqdkkneshYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Low Complexity Region (SEG)
MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Disordered region (IsUnstruct)
*******DLMQYPVLPFILSDYKSATLDL**********************HYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMF***
Disordered Region (DISOPRED)
MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMC****GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Disordered Region (DISEMBL)
MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Disordered Region (DISPRO)
****SYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
P97412	3788	Lysosomal-trafficking reg	yes	N/A	0.971	0.026	0.650	7e-35
Q9TTK4	3796	Lysosomal-trafficking reg	yes	N/A	0.971	0.026	0.641	1e-34
Q99698	3801	Lysosomal-trafficking reg	yes	N/A	0.971	0.026	0.632	7e-33
Q86JF2	4118	BEACH domain-containing p	yes	N/A	0.914	0.023	0.538	6e-28
Q6VNB8	3508	WD repeat and FYVE domain	no	N/A	0.923	0.027	0.514	9e-24
Q6ZS30	2694	Neurobeachin-like protein	no	N/A	0.923	0.036	0.466	6e-23
Q8IZQ1	3526	WD repeat and FYVE domain	no	N/A	0.923	0.027	0.504	1e-22
Q6ZNJ1	2754	Neurobeachin-like protein	no	N/A	0.904	0.034	0.455	4e-22
P25356	2167	Beige protein homolog 1 O	yes	N/A	0.933	0.045	0.427	7e-22
E7FAW3	2801	Neurobeachin-like protein	no	N/A	0.923	0.034	0.436	2e-21

>sp|P97412|LYST_MOUSE Lysosomal-trafficking regulator OS=Mus musculus GN=Lyst PE=1 SV=1

 Score =  145 bits (366), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/106 (65%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 2    AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
            AGRS+NDLMQYPV PFILSDY S TLDL DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct: 3140 AGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLSKPIAVQYKEKEDRYVDTYKYLE 3199

Query: 62   REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct: 3200 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3245

May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules.
Mus musculus (taxid: 10090)

>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1

 Score =  145 bits (365), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/106 (64%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 2    AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
            AGRS+NDLMQYPV PFIL+DY S TLDL+DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct: 3148 AGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLE 3207

Query: 62   REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct: 3208 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3253

May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules.

Bos taurus (taxid: 9913)

>sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3

 Score =  139 bits (349), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 67/106 (63%), Positives = 76/106 (71%), Gaps = 4/106 (3%)

Query: 2    AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
            AGRS+NDLMQYPV PFIL+DY S TLDL D   +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct: 3153 AGRSFNDLMQYPVFPFILADYVSETLDLNDLLIYRNLSKPIAVQYKEKEDRYVDTYKYLE 3212

Query: 62   REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct: 3213 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3258

May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules.

Homo sapiens (taxid: 9606)

>sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB OS=Dictyostelium discoideum GN=lvsB PE=4 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 72/104 (69%), Gaps = 8/104 (7%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRS+NDL QYP+ PFIL DY+S  LDL +P +FR+  KPM  QD K    ++  YN L
Sbjct: 3523 LAGRSFNDLTQYPIFPFILRDYESEVLDLENPNTFRDFTKPMGAQDPKRLEKFIEKYNDL 3582

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
                      +N++PYHYGSHYSN G+VLHFLVR+ PFTS F++
Sbjct: 3583 LE--------MNEKPYHYGSHYSNIGSVLHFLVRLQPFTSYFID 3618

Involved in negative regulation of lysosome biogenesis, by limiting the heterotypic fusion of early endosomes and postlysosomal compartments.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6VNB8|WDFY3_MOUSE WD repeat and FYVE domain-containing protein 3 OS=Mus musculus GN=Wdfy3 PE=1 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 6/103 (5%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV P+ILSDY S  +DLT+PK+FRNL KPM  Q  +  + Y   Y   
Sbjct: 2697 LAGRSYNDLMQYPVFPWILSDYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRY--- 2753

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             ++  D  G      YHYG+HYS++  V  +LVR+ PFT +FL
Sbjct: 2754 -KDWEDPNG--ETPAYHYGTHYSSAMIVASYLVRMEPFTQIFL 2793

Mus musculus (taxid: 10090)

>sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3

 Score =  105 bits (263), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 6/103 (5%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            MAGR+YNDL QYPV P+IL DY S  LDL +P  FR+L KP+ V ++KN       Y   
Sbjct: 2024 MAGRTYNDLAQYPVFPWILQDYTSEELDLNNPAVFRDLSKPIGVVNEKNAKAMREKYENF 2083

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
                 D +G +++  +HYG+HYSNS  V+H+L+R+ PFT++ +
Sbjct: 2084 E----DPMGTIDK--FHYGTHYSNSAGVMHYLIRVEPFTTLHI 2120

Homo sapiens (taxid: 9606)

>sp|Q8IZQ1|WDFY3_HUMAN WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 6/103 (5%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV P+IL+DY S  +DLT+PK+FRNL KPM  Q  +  + Y   Y   
Sbjct: 2715 LAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRY--- 2771

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             ++  D  G      YHYG+HYS++  V  +LVR+ PFT +FL
Sbjct: 2772 -KDWEDPNG--ETPAYHYGTHYSSAMIVASYLVRMEPFTQIFL 2811

Homo sapiens (taxid: 9606)

>sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2

 Score =  103 bits (256), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 67/101 (66%), Gaps = 6/101 (5%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGR+YNDL QYPV P++L DY S TLDL++P  FR+L KP+ V + K+       Y   
Sbjct: 2085 IAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESF 2144

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSM 101
                 D  G +++  +HYG+HYSN+  V+H+L+R+ PFTS+
Sbjct: 2145 E----DPAGTIDK--FHYGTHYSNAAGVMHYLIRVEPFTSL 2179

Probably involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis.

Homo sapiens (taxid: 9606)

>sp|P25356|BPH1_YEAST Beige protein homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BPH1 PE=4 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 69/103 (66%), Gaps = 5/103 (4%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRS+NDL QYPV P++++DY+S  LDL +PK++R+L KPM  Q +K +  ++  Y  L
Sbjct: 1577 LAGRSFNDLTQYPVFPWVIADYESNVLDLENPKTYRDLSKPMGAQSEKRKLQFIERYEAL 1636

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
            A     ++   +  P+HYG+HYS++  V  +L+R+ PF   FL
Sbjct: 1637 A-----SLENADSAPFHYGTHYSSAMIVSSYLIRLKPFVESFL 1674

May be involved in protein sorting and cell wall formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 6/103 (5%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGR+YNDL QYPV P++L DY SA LDL DP  FR+L KP+ V + ++  +    Y   
Sbjct: 2131 IAGRTYNDLSQYPVFPWVLCDYTSAELDLDDPAVFRDLSKPIGVVNPRHAQNVREKYESF 2190

Query: 61   AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
                 D  G +++  +HYG+HYSN+  V+H+++R  PFTS+ +
Sbjct: 2191 E----DPTGTIDK--FHYGTHYSNAAGVMHYMIRTEPFTSLHI 2227

Involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
383865882	3448	PREDICTED: lysosomal-trafficking regulat	0.980	0.029	0.704	2e-42
307201173	3496	Lysosomal-trafficking regulator [Harpegn	0.980	0.029	0.714	2e-42
350403013	3438	PREDICTED: lysosomal-trafficking regulat	0.980	0.029	0.704	2e-42
307175931	3422	Lysosomal-trafficking regulator [Campono	0.980	0.030	0.714	7e-42
345480622	3378	PREDICTED: lysosomal-trafficking regulat	0.990	0.030	0.688	2e-41
332030959	3486	Lysosomal-trafficking regulator [Acromyr	0.980	0.029	0.695	3e-41
322788736	3442	hypothetical protein SINV_80262 [Solenop	0.980	0.029	0.695	4e-41
328790033	3399	PREDICTED: lysosomal-trafficking regulat	0.980	0.030	0.695	5e-41
380011912	2932	PREDICTED: lysosomal-trafficking regulat	0.971	0.034	0.692	3e-40
170586220	2681	Beige/BEACH domain containing protein [B	0.980	0.038	0.644	8e-36

>gi|383865882|ref|XP_003708401.1| PREDICTED: lysosomal-trafficking regulator-like [Megachile rotundata]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/105 (70%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DL +PK +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2821 LAGRSYNDLMQYPVFPFVLADYTSENIDLNNPKIYRNFKRPMAVQDKKNEQHYINNYNYL 2880

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +    +NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2881 KQALSEGLNLIALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFL 2925

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201173|gb|EFN81079.1| Lysosomal-trafficking regulator [Harpegnathos saltator]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/105 (71%), Positives = 90/105 (85%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S T+DL +PK +RN K+PMAVQDKKNE HY++NYNYL
Sbjct: 2866 LAGRSYNDLMQYPVFPFVLADYVSETIDLNNPKIYRNFKRPMAVQDKKNEQHYIDNYNYL 2925

Query: 61   AREMCDAVGGV--NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +  +  NQEPYHYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2926 KQALTEGLNLIVLNQEPYHYGSHYSNSGTVLHFLVRLPPFTSMFL 2970

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403013|ref|XP_003486675.1| PREDICTED: lysosomal-trafficking regulator-like [Bombus impatiens]

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/105 (70%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DL +PK +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2812 LAGRSYNDLMQYPVFPFVLADYTSEKIDLNNPKIYRNFKRPMAVQDKKNEQHYINNYNYL 2871

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +    +NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2872 KQALSEGLNLIALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFL 2916

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175931|gb|EFN65741.1| Lysosomal-trafficking regulator [Camponotus floridanus]

 Score =  174 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/105 (71%), Positives = 88/105 (83%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  LDL DPK +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2794 LAGRSYNDLMQYPVFPFVLADYVSDKLDLNDPKIYRNFKRPMAVQDKKNEQHYINNYNYL 2853

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +    +NQ P+HYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2854 KQTLTEGLNLIALNQGPFHYGSHYSNSGTVLHFLVRLPPFTSMFL 2898

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480622|ref|XP_001604427.2| PREDICTED: lysosomal-trafficking regulator-like [Nasonia vitripennis]

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/106 (68%), Positives = 89/106 (83%), Gaps = 2/106 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DLT+   +RN ++PMAVQDKKNE HY+NNYNYL
Sbjct: 2750 LAGRSYNDLMQYPVFPFVLADYTSEKIDLTNATIYRNFRRPMAVQDKKNEQHYINNYNYL 2809

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
             + + + +    +NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFLN
Sbjct: 2810 KQALSEGLNLVALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFLN 2855

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030959|gb|EGI70585.1| Lysosomal-trafficking regulator [Acromyrmex echinatior]

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/105 (69%), Positives = 88/105 (83%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DL +PK +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2858 LAGRSYNDLMQYPVFPFVLADYVSEKIDLNNPKIYRNFKRPMAVQDKKNEQHYINNYNYL 2917

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +    +NQ P+HYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2918 KQTLTEGLNLIALNQGPFHYGSHYSNSGTVLHFLVRLPPFTSMFL 2962

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788736|gb|EFZ14329.1| hypothetical protein SINV_80262 [Solenopsis invicta]

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/105 (69%), Positives = 88/105 (83%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DL +PK +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2812 LAGRSYNDLMQYPVFPFVLADYISEKIDLNNPKIYRNFKRPMAVQDKKNEQHYINNYNYL 2871

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +    +NQ P+HYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2872 KQTLTEGLNLIALNQGPFHYGSHYSNSGTVLHFLVRLPPFTSMFL 2916

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790033|ref|XP_392306.3| PREDICTED: lysosomal-trafficking regulator-like [Apis mellifera]

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/105 (69%), Positives = 88/105 (83%), Gaps = 2/105 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DL + K +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2771 LAGRSYNDLMQYPVFPFVLADYISEKIDLNNLKIYRNFKRPMAVQDKKNEQHYINNYNYL 2830

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
             + + + +    +NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL
Sbjct: 2831 KQALSEGLNLIALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFL 2875

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011912|ref|XP_003690037.1| PREDICTED: lysosomal-trafficking regulator-like [Apis florea]

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/104 (69%), Positives = 87/104 (83%), Gaps = 2/104 (1%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+L+DY S  +DL + K +RN K+PMAVQDKKNE HY+NNYNYL
Sbjct: 2814 LAGRSYNDLMQYPVFPFVLADYISEKIDLNNLKIYRNFKRPMAVQDKKNEQHYINNYNYL 2873

Query: 61   AREMCDAVG--GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMF 102
             + + + +    +NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMF
Sbjct: 2874 KQALSEGLNLIALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMF 2917

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170586220|ref|XP_001897877.1| Beige/BEACH domain containing protein [Brugia malayi] gi|158594272|gb|EDP32856.1| Beige/BEACH domain containing protein [Brugia malayi]

 Score =  154 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 4/107 (3%)

Query: 1    MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
            +AGRSYNDLMQYPV PF+LSDYKS  LDLT+P SFR+L +PMA+QDK+ E HY+  Y+YL
Sbjct: 2059 LAGRSYNDLMQYPVFPFVLSDYKSTVLDLTNPISFRDLSRPMAIQDKRLEKHYLRKYSYL 2118

Query: 61   AREMCDAVGGVNQE----PYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
            ARE   AV G        PYHYGSHYSN G V H+LVR+PPFT + L
Sbjct: 2119 AREEVQAVSGCGSPFMFGPYHYGSHYSNIGIVAHYLVRLPPFTDIAL 2165

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
RGD|621837	3788	Lyst "lysosomal trafficking re	0.971	0.026	0.650	3.7e-30
MGI|MGI:107448	3788	Lyst "lysosomal trafficking re	0.971	0.026	0.650	4.7e-30
UNIPROTKB|F1MLZ4	3796	LYST "Lysosomal-trafficking re	0.971	0.026	0.641	7.6e-30
UNIPROTKB|Q9TTK4	3796	LYST "Lysosomal-trafficking re	0.971	0.026	0.641	7.6e-30
UNIPROTKB|F1RGY4	3799	F1RGY4 "Uncharacterized protei	0.971	0.026	0.641	7.7e-30
UNIPROTKB|Q99698	3801	LYST "Lysosomal-trafficking re	0.971	0.026	0.632	1.8e-28
FB|FBgn0262110	2517	CG42863 [Drosophila melanogast	0.971	0.040	0.572	6.3e-28
DICTYBASE|DDB_G0271504	4118	lvsB "BEACH domain-containing	0.914	0.023	0.557	8.2e-25
MGI|MGI:1096875	3508	Wdfy3 "WD repeat and FYVE doma	0.923	0.027	0.514	3.2e-20
UNIPROTKB|E1BRH2	3511	WDFY3 "Uncharacterized protein	0.923	0.027	0.504	4.1e-20

RGD|621837 Lyst "lysosomal trafficking regulator" [Rattus norvegicus (taxid:10116)]

 Score = 352 (129.0 bits), Expect = 3.7e-30, P = 3.7e-30
 Identities = 69/106 (65%), Positives = 77/106 (72%)

Query:     2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
             AGRS+NDLMQYPV PFILSDY S TLDL DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct:  3140 AGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLSKPIAVQYKEKEDRYVDTYKYLE 3199

Query:    62 REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct:  3200 EEFRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3245

GO:0002446 "neutrophil mediated immunity" evidence=ISO

GO:0002456 "T cell mediated immunity" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005829 "cytosol" evidence=ISO

GO:0006644 "phospholipid metabolic process" evidence=ISO

GO:0007017 "microtubule-based process" evidence=ISO

GO:0007040 "lysosome organization" evidence=ISO

GO:0007596 "blood coagulation" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030595 "leukocyte chemotaxis" evidence=ISO

GO:0032438 "melanosome organization" evidence=ISO

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=ISO

GO:0032816 "positive regulation of natural killer cell activation" evidence=ISO

GO:0033299 "secretion of lysosomal enzymes" evidence=ISO

GO:0033364 "mast cell secretory granule organization" evidence=ISO

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042742 "defense response to bacterium" evidence=ISO

GO:0042832 "defense response to protozoan" evidence=ISO

GO:0043473 "pigmentation" evidence=ISO;IMP

GO:0048753 "pigment granule organization" evidence=ISO

GO:0051607 "defense response to virus" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

MGI|MGI:107448 Lyst "lysosomal trafficking regulator" [Mus musculus (taxid:10090)]

 Score = 351 (128.6 bits), Expect = 4.7e-30, P = 4.7e-30
 Identities = 69/106 (65%), Positives = 77/106 (72%)

Query:     2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
             AGRS+NDLMQYPV PFILSDY S TLDL DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct:  3140 AGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLSKPIAVQYKEKEDRYVDTYKYLE 3199

Query:    62 REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct:  3200 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3245

GO:0002446 "neutrophil mediated immunity" evidence=IMP

GO:0002456 "T cell mediated immunity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006644 "phospholipid metabolic process" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0007596 "blood coagulation" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030595 "leukocyte chemotaxis" evidence=IMP

GO:0032438 "melanosome organization" evidence=IMP

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=ISO

GO:0032816 "positive regulation of natural killer cell activation" evidence=IMP

GO:0033299 "secretion of lysosomal enzymes" evidence=IMP

GO:0033364 "mast cell secretory granule organization" evidence=IMP

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=ISO

GO:0042493 "response to drug" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042832 "defense response to protozoan" evidence=IMP

GO:0043473 "pigmentation" evidence=ISO;IMP

GO:0048753 "pigment granule organization" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

UNIPROTKB|F1MLZ4 LYST "Lysosomal-trafficking regulator" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.6e-30, P = 7.6e-30
 Identities = 68/106 (64%), Positives = 78/106 (73%)

Query:     2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
             AGRS+NDLMQYPV PFIL+DY S TLDL+DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct:  3148 AGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLE 3207

Query:    62 REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct:  3208 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3253

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0042832 "defense response to protozoan" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA

GO:0033364 "mast cell secretory granule organization" evidence=IEA

GO:0033299 "secretion of lysosomal enzymes" evidence=IEA

GO:0032816 "positive regulation of natural killer cell activation" evidence=IEA

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=IEA

GO:0032438 "melanosome organization" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0006644 "phospholipid metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0002456 "T cell mediated immunity" evidence=IEA

GO:0002446 "neutrophil mediated immunity" evidence=IEA

UNIPROTKB|Q9TTK4 LYST "Lysosomal-trafficking regulator" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.6e-30, P = 7.6e-30
 Identities = 68/106 (64%), Positives = 78/106 (73%)

Query:     2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
             AGRS+NDLMQYPV PFIL+DY S TLDL+DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct:  3148 AGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLE 3207

Query:    62 REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct:  3208 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3253

GO:0043473 "pigmentation" evidence=ISS

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=ISS

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1RGY4 F1RGY4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 349 (127.9 bits), Expect = 7.7e-30, P = 7.7e-30
 Identities = 68/106 (64%), Positives = 78/106 (73%)

Query:     2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
             AGRS+NDLMQYPV PFIL+DY S TLDL+DP  +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct:  3151 AGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLE 3210

Query:    62 REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct:  3211 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3256

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0042832 "defense response to protozoan" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA

GO:0033364 "mast cell secretory granule organization" evidence=IEA

GO:0033299 "secretion of lysosomal enzymes" evidence=IEA

GO:0032816 "positive regulation of natural killer cell activation" evidence=IEA

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=IEA

GO:0032438 "melanosome organization" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0006644 "phospholipid metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0002456 "T cell mediated immunity" evidence=IEA

GO:0002446 "neutrophil mediated immunity" evidence=IEA

UNIPROTKB|Q99698 LYST "Lysosomal-trafficking regulator" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-28, P = 1.8e-28
 Identities = 67/106 (63%), Positives = 76/106 (71%)

Query:     2 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
             AGRS+NDLMQYPV PFIL+DY S TLDL D   +RNL KP+AVQ K+ E  YV+ Y YL 
Sbjct:  3153 AGRSFNDLMQYPVFPFILADYVSETLDLNDLLIYRNLSKPIAVQYKEKEDRYVDTYKYLE 3212

Query:    62 REMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              E        +     +PYHYGSHYSNSGTVLHFLVR+PPFT MFL
Sbjct:  3213 EEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFL 3258

GO:0002446 "neutrophil mediated immunity" evidence=IEA

GO:0002456 "T cell mediated immunity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006644 "phospholipid metabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0032816 "positive regulation of natural killer cell activation" evidence=IEA

GO:0033299 "secretion of lysosomal enzymes" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=IMP

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IMP

GO:0043473 "pigmentation" evidence=IMP

GO:0030595 "leukocyte chemotaxis" evidence=ISS

GO:0032438 "melanosome organization" evidence=ISS

GO:0033364 "mast cell secretory granule organization" evidence=ISS

GO:0042742 "defense response to bacterium" evidence=ISS

GO:0042832 "defense response to protozoan" evidence=ISS

GO:0051607 "defense response to virus" evidence=ISS

FB|FBgn0262110 CG42863 [Drosophila melanogaster (taxid:7227)]

 Score = 329 (120.9 bits), Expect = 6.3e-28, P = 6.3e-28
 Identities = 59/103 (57%), Positives = 79/103 (76%)

Query:     1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
             ++GR+YNDLMQYPV P++L++Y S  LDL +  +FR L +P+AVQ ++NE HY++NY Y+
Sbjct:  1798 ISGRTYNDLMQYPVFPWVLANYNSEVLDLREGHNFRRLGRPIAVQVEENEKHYISNYTYI 1857

Query:    61 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
                    +G +  +PYHY SHYSNSGTVLHFLVR+PPFTS FL
Sbjct:  1858 DSTNT-TMGSLILKPYHYSSHYSNSGTVLHFLVRVPPFTSYFL 1899

GO:0007040 "lysosome organization" evidence=ISS

GO:0007041 "lysosomal transport" evidence=ISS

DICTYBASE|DDB_G0271504 lvsB "BEACH domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 302 (111.4 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 58/104 (55%), Positives = 73/104 (70%)

Query:     1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
             +AGRS+NDL QYP+ PFIL DY+S  LDL +P +FR+  KPM  QD K    ++  YN L
Sbjct:  3523 LAGRSFNDLTQYPIFPFILRDYESEVLDLENPNTFRDFTKPMGAQDPKRLEKFIEKYNDL 3582

Query:    61 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
               EM       N++PYHYGSHYSN G+VLHFLVR+ PFTS F++
Sbjct:  3583 L-EM-------NEKPYHYGSHYSNIGSVLHFLVRLQPFTSYFID 3618

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0006887 "exocytosis" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005764 "lysosome" evidence=IEA;IDA

GO:0001845 "phagolysosome assembly" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0006907 "pinocytosis" evidence=IMP

GO:0007041 "lysosomal transport" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

MGI|MGI:1096875 Wdfy3 "WD repeat and FYVE domain containing 3" [Mus musculus (taxid:10090)]

 Score = 258 (95.9 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 53/103 (51%), Positives = 68/103 (66%)

Query:     1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
             +AGRSYNDLMQYPV P+ILSDY S  +DLT+PK+FRNL KPM  Q  +  + Y   Y   
Sbjct:  2697 LAGRSYNDLMQYPVFPWILSDYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRY--- 2753

Query:    61 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              ++  D  G      YHYG+HYS++  V  +LVR+ PFT +FL
Sbjct:  2754 -KDWEDPNG--ETPAYHYGTHYSSAMIVASYLVRMEPFTQIFL 2793

GO:0003831 "beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity" evidence=IDA

GO:0005545 "1-phosphatidylinositol binding" evidence=ISO

GO:0005635 "nuclear envelope" evidence=ISA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISA

GO:0008152 "metabolic process" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=ISA

GO:0044444 "cytoplasmic part" evidence=ISA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BRH2 WDFY3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 52/103 (50%), Positives = 68/103 (66%)

Query:     1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
             +AGRSYNDLMQYPV P++L+DY S  LDLT+PK+FRNL KPM  Q +   + Y   Y   
Sbjct:  2699 LAGRSYNDLMQYPVFPWVLADYDSEELDLTNPKTFRNLAKPMGAQTEDRLAQYKKRY--- 2755

Query:    61 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
              ++  D  G      YHYG+HYS++  V  +LVR+ PFT +FL
Sbjct:  2756 -KDWEDPNG--ETPAYHYGTHYSSAMIVASYLVRMEPFTQIFL 2795

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TTK4	LYST_BOVIN	No assigned EC number	0.6415	0.9714	0.0268	yes	N/A
P97412	LYST_MOUSE	No assigned EC number	0.6509	0.9714	0.0269	yes	N/A
Q99698	LYST_HUMAN	No assigned EC number	0.6320	0.9714	0.0268	yes	N/A
Q86JF2	LVSB_DICDI	No assigned EC number	0.5384	0.9142	0.0233	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
smart01026	280	smart01026, Beach, Beige/BEACH domain	4e-46
pfam02138	274	pfam02138, Beach, Beige/BEACH domain	3e-39
cd06071	275	cd06071, Beach, BEACH (Beige and Chediak-Higashi)	1e-37

>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain

 Score =  148 bits (377), Expect = 4e-46
 Identities = 47/104 (45%), Positives = 70/104 (67%), Gaps = 8/104 (7%)

Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGRSYNDL QYPV P++L+DY S TLDL++P +FR+L KP+   + +    +   Y   
Sbjct: 21  LAGRSYNDLTQYPVFPWVLADYTSETLDLSNPSTFRDLSKPIGALNPERLEFFYERYE-- 78

Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
             E+ D        P+HYG+HYS++G VL++L+R+ PFT++FL 
Sbjct: 79  --ELEDPD----IPPFHYGTHYSSAGIVLYYLIRLEPFTTLFLQ 116

The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280

>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain

 Score =  131 bits (331), Expect = 3e-39
 Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 9/104 (8%)

Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGRS+NDL QYPV P++L+DY S TLDL DP ++R+L KP+   +++    +   Y  L
Sbjct: 21  LAGRSFNDLSQYPVFPWVLADYTSETLDLNDPSTYRDLSKPIGALNEERLKKFKERYEEL 80

Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
                         P+HYGSHYS+ G+VLH+L+R+ PFT++ + 
Sbjct: 81  D---------EVGPPFHYGSHYSSPGSVLHYLIRLEPFTTLHIE 115

Length = 274

>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

 Score =  126 bits (320), Expect = 1e-37
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 8/102 (7%)

Query: 2   AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLA 61
           AGRS+NDL QYP+ P+++SDY S  LDL DP ++R+L KP+   +K+        Y   +
Sbjct: 22  AGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESDS 81

Query: 62  REMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFL 103
            +        +  P+HYGSHYSN   VL++LVR+ PFT++ L
Sbjct: 82  DD--------SDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHL 115

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
cd06071	275	Beach BEACH (Beige and Chediak-Higashi) domains, i	100.0
PF02138	270	Beach: Beige/BEACH domain; InterPro: IPR000409 The	100.0
KOG1787|consensus	1126		99.95
KOG1786|consensus	1081		99.76
KOG1786|consensus	1081		99.68
KOG1787|consensus	1126		98.33

>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

Probab=100.00  E-value=1.6e-43  Score=276.71  Aligned_cols=96  Identities=46%  Similarity=0.914  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      +|||||||++|||||||||+||+|++|||+++..||||+|||||++++|++.++++|+++...        +.++||||+
T Consensus        21 ~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~~~~--------~~~~~~y~s   92 (275)
T cd06071          21 LAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESDSDD--------SDPPFHYGS   92 (275)
T ss_pred             HhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhhccc--------CCCCCCCCC
Confidence            589999999999999999999999999999999999999999999999999999999754321        468999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhcccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                      |||+|++|++||||+||||++||.
T Consensus        93 hyS~~~~V~~yLvR~ePft~~~~~  116 (275)
T cd06071          93 HYSNPAIVLYYLVRLEPFTTLHLS  116 (275)
T ss_pred             CCCCHHHHHHHHhHcCCccHHHHH
Confidence            999999999999999999998874

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.

>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling

Probab=100.00  E-value=2.4e-42  Score=269.26  Aligned_cols=95  Identities=47%  Similarity=0.963  Sum_probs=65.2

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      +|||||+|++||||||||++||++++|||+|+..||||+|||||++++|+++++++|+++++         ..++||||+
T Consensus        21 ~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~~~---------~~~~~~y~s   91 (270)
T PF02138_consen   21 LAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEMEE---------FEPPFHYGS   91 (270)
T ss_dssp             HCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC--S---------SS---SBSS
T ss_pred             HhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhhhc---------cCCCccccC
Confidence            59999999999999999999999999999999999999999999999999999999986321         237999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhcccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                      |||++++|++||+|+||||++|+.
T Consensus        92 ~ys~~~~v~~~L~R~ePft~l~~~  115 (270)
T PF02138_consen   92 HYSSPGTVLYYLVRLEPFTSLHID  115 (270)
T ss_dssp             -SS-HHHHHHHTTTSTTHHHHHHH
T ss_pred             CCCCcchhhhhhcccChHHHHHHH
Confidence            999999999999999999999864

The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.

>KOG1787|consensus

Probab=99.95  E-value=5.4e-30  Score=227.51  Aligned_cols=96  Identities=45%  Similarity=0.867  Sum_probs=91.1

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      .+||||||++||||||||+.||.++++|++.+.+||||+|||||+|++|...|.+||+..++.        .++.|||++
T Consensus       492 ~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigaln~~~~~~f~dry~s~~D~--------~i~~~~~~t  563 (1126)
T KOG1787|consen  492 SAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGALNPKRAYLFRDRYESFEDQ--------AIPSFHYGT  563 (1126)
T ss_pred             ccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCCCcccchhHhhhhhccccc--------ccccccccc
Confidence            489999999999999999999999999999999999999999999999999999999976543        468999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhcccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                      |||+++.|++||+|+||||++||+
T Consensus       564 hys~~~~~l~~l~rvepf~S~~~~  587 (1126)
T KOG1787|consen  564 HYSSAANVLAYLLRVEPFTSLHLQ  587 (1126)
T ss_pred             ccccccceeeeeeecCcccccccc
Confidence            999999999999999999999986

>KOG1786|consensus

Probab=99.76  E-value=1.1e-19  Score=162.40  Aligned_cols=91  Identities=58%  Similarity=1.045  Sum_probs=75.8

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      +||||+||++||||||||++||.++.+|+.+..+||++++|||++    .+...+.. ..+.+        ...+||||+
T Consensus       896 ~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~~a~~----~~~~~~~~-~~~~e--------~~~~~~~~~  962 (1081)
T KOG1786|consen  896 LAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRPIAVQ----KEKLEEHH-SWESE--------DTEPYHYGS  962 (1081)
T ss_pred             hhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccchhHH----HHHHhhhh-hhhhh--------ccCCccccc
Confidence            589999999999999999999999999999999999999999933    22111221 22211        237999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhcccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                      |||+++.|.+|++|+.|||.+|+.
T Consensus       963 ~~s~~~~~~~~~~r~~p~~~~~~~  986 (1081)
T KOG1786|consen  963 HYSNSGTVSHFLIRLPPFTEMFLS  986 (1081)
T ss_pred             cccCccccccccccCCchHHHHHH
Confidence            999999999999999999999874

>KOG1786|consensus

Probab=99.68  E-value=1.4e-17  Score=148.93  Aligned_cols=97  Identities=29%  Similarity=0.518  Sum_probs=88.6

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      ++||+++|++||||||||+.+|+++.+|+.|+..+|++.||+|++++++.+.+..+|++..+.+.      ..+.|||++
T Consensus       359 l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~~~~~r~~~~~d~~~------~~~~~~~~t  432 (1081)
T KOG1786|consen  359 LAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYERFAKRFEEWLDQNA------EDPLFHVLT  432 (1081)
T ss_pred             ccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHHHHhhhhhhhhcccc------ccccccccc
Confidence            58999999999999999999999999999999999999999999999999999999997654322      358999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFL  103 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i  103 (105)
                      ||+++.+|+.|++|.+|++.+++
T Consensus       433 ~~~S~~~~~~y~~r~~p~~~~~~  455 (1081)
T KOG1786|consen  433 HLLSPLIVMSYFARKNPLSELFL  455 (1081)
T ss_pred             cccchhhhhhhhhhcCcchHHHH
Confidence            99999999999999999777654

>KOG1787|consensus

Probab=98.33  E-value=3.4e-08  Score=89.44  Aligned_cols=95  Identities=15%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCc-cccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKK-PMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYG   79 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLsk-Piga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~   79 (105)
                      +.||+.|+..+||.|||...+.-+...|+-.+..|||..+ +++++++++++.+......        -..+.++.+|++
T Consensus       875 ~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~~~ar~~~~l~~~~~~~s~--------s~D~tI~~~~~s  946 (1126)
T KOG1787|consen  875 FVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVTCGARLEQYLAALQYPVSS--------SEDGTIPLLYWS  946 (1126)
T ss_pred             EEEeccCccccccCccccccceEeeehhhhccccccccceeeeeeccccccccccccccc--------CCCcceeeeeec
Confidence            4699999999999999999999999999889999999999 9999999999876554432        123357899999


Q ss_pred             CCCCCHHHHHHhhcCchhhhhcccc
Q psy10782         80 SHYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        80 shyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                       |||+.+-+..+.-|.+||+.+-++
T Consensus       947 -~~~~~g~~~~~~s~~~e~~~lt~~  970 (1126)
T KOG1787|consen  947 -HISSIGDIVVSGSAPEEFTTLTGQ  970 (1126)
T ss_pred             -cccccccccccccccCccchheec
Confidence             999999999999999999987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
1mi1_A	414	Crystal Structure Of The Ph-Beach Domain Of Human N		1e-20
1t77_A	414	Crystal Structure Of The Ph-Beach Domains Of Human		4e-20

>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGR+YNDL QYPV P++L++Y+S  LDLT P +FR+L KP+   + K    Y   Y   
Sbjct: 157 IAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETW 216
Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNS 105
             +           PYHY +HYS + + L +LVRI PFT+ FLN+
Sbjct: 217 EDD--------QSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNA 253

>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 8/104 (7%)
Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGRSYNDL QYPV P+++++Y+S  LDLT P +FR+L KP+   + K  + +   Y   
Sbjct: 157 IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESW 216
Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
             +            +HYG+HYS +  VL +L+RI PFT+ FLN
Sbjct: 217 EDDQVPK--------FHYGTHYSTASFVLAWLLRIEPFTTYFLN 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	2e-29

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414

 Score =  107 bits (268), Expect = 2e-29
 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 8/104 (7%)

Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGRSYNDL QYPV P+++++Y+S  LDLT P +FR+L KP+   + K  + +   Y   
Sbjct: 157 IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESW 216

Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
                          +HYG+HYS +  VL +L+RI PFT+ FLN
Sbjct: 217 E--------DDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	100.0

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=100.00  E-value=8.4e-44  Score=289.62  Aligned_cols=96  Identities=46%  Similarity=0.887  Sum_probs=89.8

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      +|||||||++|||||||||+||+|++|||+|++.||||+|||||+|++|++.+++||+++++        ...++|||||
T Consensus       157 ~aGRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~~--------~~~~~f~ygs  228 (414)
T 1t77_A          157 IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWED--------DQVPKFHYGT  228 (414)
T ss_dssp             HHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCC--------SSSCCCSBSS
T ss_pred             HcCCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhcc--------cCCCCcccCC
Confidence            58999999999999999999999999999999999999999999999999999999987532        1468999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhcccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                      |||++++|++||+|+||||++|++
T Consensus       229 hyS~~~~V~~yL~R~ePft~~~~~  252 (414)
T 1t77_A          229 HYSTASFVLAWLLRIEPFTTYFLN  252 (414)
T ss_dssp             CSCCHHHHHHHHTTSTTHHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCcHHHHHHH
Confidence            999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1t77a1	304	a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons	6e-34

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 6e-34
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 8/104 (7%)

Query: 1   MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL 60
           +AGRSYNDL QYPV P+++++Y+S  LDLT P +FR+L KP+   + K  + +   Y   
Sbjct: 47  IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESW 106

Query: 61  AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLN 104
             +            +HYG+HYS +  VL +L+RI PFT+ FLN
Sbjct: 107 EDD--------QVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1t77a1	304	Lipopolysaccharide-responsive and beige-like ancho	100.0

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=271.28  Aligned_cols=96  Identities=46%  Similarity=0.907  Sum_probs=89.3

Q ss_pred             CCCCCCCCCCCCCccceEeccCCCCCcCCCCCccccccCccccccChHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCC
Q psy10782          1 MAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS   80 (105)
Q Consensus         1 lsGRSfnDlsqYPVFPWVl~dy~s~~ldl~~~~~~RDLskPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~~f~y~s   80 (105)
                      +|||||||++|||||||||+||+|+++||+|++.||||+|||||+|++|++.++++|+++.+.        +.++||||+
T Consensus        47 ~sGRSf~D~~qYPIfPWVi~dy~s~~ldl~~~~~~RDLskpig~l~~~r~~~~~~~~~~~~~~--------~~~~~~y~s  118 (304)
T d1t77a1          47 IAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDD--------QVPKFHYGT  118 (304)
T ss_dssp             HHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCCS--------SSCCCSBSS
T ss_pred             HhCCCCCCcccCcccCeeeccCCcccccccCccccccCCCchhccCHHHHHHHHHHHHhcccC--------CCCCcccCC
Confidence            589999999999999999999999999999999999999999999999999999999864321        468999999


Q ss_pred             CCCCHHHHHHhhcCchhhhhcccc
Q psy10782         81 HYSNSGTVLHFLVRIPPFTSMFLN  104 (105)
Q Consensus        81 hyS~~~~V~~yLiR~ePFt~l~i~  104 (105)
                      |||+|++|++||+|+||||++||.
T Consensus       119 ~yS~~~~V~~~L~R~ePft~l~~~  142 (304)
T d1t77a1         119 HYSTASFVLAWLLRIEPFTTYFLN  142 (304)
T ss_dssp             CSCCHHHHHHHHTTSTTHHHHHHH
T ss_pred             CCCChhHHHHHHhcCCchhHHHHH
Confidence            999999999999999999999863