Psyllid ID: psy10797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MVRLSSADIIFRQDYPMLTLSRGKVEPNGGPSSLIPMSPHHKMMPGTGRDMKMIESDQVRDLKSQLNGQNTAKRSNHLNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS
Secondary Structure (PSIPRED)
ccccccccEEEccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEcEEEcccccEEEEEEEccccccccccEEEEEEEHHHHHccccEEEEEHHHHccccccEEEEEEEEHHHHHcccEEEEEEEEccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccEcccHcEEEEcccccEEEccccEccccccccccccccccccccccccccHHHccHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccEEEEEEEEEEEEEccEEEEEEEEEEEEEEccEEEEEEEEEEEEEEccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEccEEEEEEEEEEEEEEcHHEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcc
Coil and Loop (DISEMBL)
mvrlssadiifrqdypmltlsrgkvepnggpsslipmsphhkmmpgtgrdmkmIESDQVRDLKSqlngqntakrsnhlNQTFCVASLLIAQLRRKTERMKKIeqagtldettpwdssfgifrlsstVFVYHCFSIfrfssstvFVYHCFSIfrfssstvFVYHCFSIfrfssstvFVYHCFSIfrfssstvFVYHCFSIfrfssstvFVYHCFSIfrfssstifvyhcfdifsLTSTLFVSICTSAFQMSfyksrwfdfrslsdsasniygslefRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTngparlefgkdrefSAKFVNFRRKSYFFVEFLDCLRTRYEtrqrkcpkcnakandyhrlylgs
Flexible Loop (DISEMBL)
mvrlssadiifrqdypmltlsrgkvepnggpsslipmsphHKMMPGTGRDMKMIESDQVRDLKSQLNGQNtakrsnhlnqtfCVASLLIAQLRRKTERMKKieqagtldettpwdsSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNiygslefrkfacvvrdSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTEriksnqlhklarEEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNgparlefgkdREFSAKFVNFRRKSYFFVEFLDCLRTRyetrqrkcpkcnakandyhrlylgs
Low Complexity Region (SEG)
MVRLSSADIIFRQDYPMLTLSRGKVEPNGGPSSLIPMSPHHKMMPGTGRDMKMIESDQVRDLKSQLNGQNTAKRSNHLNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCfsifrfssstifVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS
Disordered region (IsUnstruct)
********IIFRQDYP*************************************************************LNQTFCVASLLIAQLRRKT*****IEQAGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVR*********************************************************************************************************LSLQIEAMHTAIRKLEEKERFLQTVLTNA************************AADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLY***
Disordered Region (DISOPRED)
*****SADIIFRQDYPMLTLSR************IPMSPHHKM*P**GRD*KMIES*Q*******************LNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAF****************************************************************************************************************************************************************************************************************************************YFFVEFLDC***********************RLYLG*
Disordered Region (DISEMBL)
MVRLSSADIIFRQDYPMLTLSRGKVEPNGGPSSLIPMSPHHKMMPGTGRDMKMIESDQVRDLKSQLNGQNTAKRSNHLNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVR***********DEEAMRKIKQLEDQ*************EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS
Disordered Region (DISPRO)
***LSSADIIFRQDYPMLTLSRGKVEPNGGPSSLIP***************K*IESDQVRDLKSQLNGQNTAKRSNHLNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRLSSADIIFRQDYPMLTLSRGKVEPNGGPSSLIPMSPHHKMMPGTGRDMKMIESDQVRDLKSQLNGQNTAKRSNHLNQTFCVxxxxxxxxxxxxxxxxxxxxxGTLDETTPWDSSFGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMEVTGQAxxxxxxxxxxxxxxxxxxxxxNFKLMTERIKSNQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
Q9VRP9	1044	E3 ubiquitin-protein liga	yes	N/A	0.468	0.231	0.507	8e-74
Q8CJB9	1002	E3 ubiquitin-protein liga	yes	N/A	0.452	0.233	0.486	7e-61
Q5RAU7	1001	E3 ubiquitin-protein liga	yes	N/A	0.433	0.223	0.480	2e-60
Q3U319	1001	E3 ubiquitin-protein liga	yes	N/A	0.435	0.224	0.489	3e-60
O75150	1001	E3 ubiquitin-protein liga	yes	N/A	0.433	0.223	0.480	3e-60
Q4R7K7	1001	E3 ubiquitin-protein liga	N/A	N/A	0.433	0.223	0.477	2e-59
Q5DTM8	973	E3 ubiquitin-protein liga	no	N/A	0.433	0.230	0.476	3e-54
Q5VTR2	975	E3 ubiquitin-protein liga	no	N/A	0.433	0.229	0.476	3e-54
A2VDP1	975	E3 ubiquitin-protein liga	no	N/A	0.433	0.229	0.476	4e-54
Q5ZLS3	984	E3 ubiquitin-protein liga	yes	N/A	0.290	0.152	0.636	1e-44

>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1 PE=1 SV=2

 Score =  278 bits (711), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 164/323 (50%), Positives = 191/323 (59%), Gaps = 81/323 (25%)

Query: 274  EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK------------- 320
            E R+    +++SKR+ERKKLADEEA+RKIKQLE+Q ++LQKQ+A HK             
Sbjct: 721  ELRQQLKKLQESKREERKKLADEEALRKIKQLEEQKYELQKQMANHKPTDNSWGSGAPGT 780

Query: 321  ----------QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370
                       EEEALLNEMEVTGQAFEDMQEQNSRL+QQLREKDDANFKLM+ERIK+NQ
Sbjct: 781  ANYTRPFVGSHEEEALLNEMEVTGQAFEDMQEQNSRLIQQLREKDDANFKLMSERIKANQ 840

Query: 371  LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL 430
            LHKL REEK  L +Q+   + QIEAMH  +RKLEEKER LQ  + + EKEL LR QAM++
Sbjct: 841  LHKLLREEKTVLEDQMATATTQIEAMHIVLRKLEEKERSLQATVASIEKELMLRQQAMEM 900

Query: 431  NKRKAIESAQSAADLKLHL------------VIIYTNGPARLEFGKDREFSAKFVNFRRK 478
            +KRKAIESAQSAADLKLHL            V+         E  K +    +   F+RK
Sbjct: 901  HKRKAIESAQSAADLKLHLEKYHAQMKEAQQVVAEKTSSLEAEAYKTKRLQEELAQFKRK 960

Query: 479  SY--------------------------------------------FFVEFLDCLRTRYE 494
            +                                             F V   DCLRTRYE
Sbjct: 961  AERMKKMEMSGTTIDEVMIEEIREYKETLTCPSCKVKRKDAVLSKCFHVFCYDCLRTRYE 1020

Query: 495  TRQRKCPKCNAK--ANDYHRLYL 515
            TRQRKCPKCN    ANDYHRLYL
Sbjct: 1021 TRQRKCPKCNCAFGANDYHRLYL 1043

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-117' of histone H2B. H2B 'Lys-117' ubiquitination gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation. It thereby plays a central role in histone code and gene regulation. Required for the expression of Notch target genes in development by affecting the levels of Su(H) in imaginal disk cells and stimulating the Su(H)-mediated transcription of Notch-specific genes.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1

 Score =  235 bits (599), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 143/294 (48%), Positives = 180/294 (61%), Gaps = 60/294 (20%)

Query: 282  VRD-SKRDER--KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338
            +RD  +RD R  KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFE
Sbjct: 708  IRDLEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFE 767

Query: 339  DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398
            DMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A   
Sbjct: 768  DMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLL 827

Query: 399  AIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN--- 455
             ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + T    
Sbjct: 828  TVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLRE 887

Query: 456  -GPA-------------------------RLEFGKDR-----------------EFSAKF 472
              P                          R +  K R                 E+ A+ 
Sbjct: 888  IQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARL 947

Query: 473  V----NFRRKSY-----FFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515
                 N R+K       F V   +C+R RYE RQRKCPKCNA   A+D+HR+Y+
Sbjct: 948  TCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1001

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/283 (48%), Positives = 174/283 (61%), Gaps = 59/283 (20%)

Query: 291  KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350
            KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFEDMQEQN RLLQQ
Sbjct: 719  KKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQ 778

Query: 351  LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410
            LREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A    ++KLEEKER L
Sbjct: 779  LREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERAL 838

Query: 411  QTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL--------------------- 449
            Q  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L                     
Sbjct: 839  QGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAR 898

Query: 450  --------------------------VIIYTNGPARLEFGKDREFSAKFV----NFRRKS 479
                                      V +Y +    L+  + +E+ A+      N R+K 
Sbjct: 899  EKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQE-EIKEYKARLTCPCCNTRKKD 957

Query: 480  Y-----FFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515
                  F V   +C+R RYE RQRKCPKCNA   A+D+HR+Y+
Sbjct: 958  AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2

 Score =  233 bits (594), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/282 (48%), Positives = 173/282 (61%), Gaps = 57/282 (20%)

Query: 291  KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350
            KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFEDMQEQN RLLQQ
Sbjct: 719  KKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQ 778

Query: 351  LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410
            LREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A    ++KLEEKER L
Sbjct: 779  LREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERAL 838

Query: 411  QTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN----GPA-------- 458
            Q  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + T      P         
Sbjct: 839  QGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAR 898

Query: 459  -----------------RLEFGKDR-----------------EFSAKFV----NFRRKSY 480
                             R +  K R                 E+ A+      N R+K  
Sbjct: 899  EKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDA 958

Query: 481  -----FFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515
                 F V   +C+R RYE RQRKCPKCNA   A+D+HR+Y+
Sbjct: 959  VLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1000

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4

 Score =  233 bits (594), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/283 (48%), Positives = 174/283 (61%), Gaps = 59/283 (20%)

Query: 291  KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350
            KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFEDMQEQN RLLQQ
Sbjct: 719  KKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQ 778

Query: 351  LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410
            LREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A    ++KLEEKER L
Sbjct: 779  LREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERAL 838

Query: 411  QTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL--------------------- 449
            Q  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L                     
Sbjct: 839  QGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAR 898

Query: 450  --------------------------VIIYTNGPARLEFGKDREFSAKFV----NFRRKS 479
                                      V +Y +    L+  + +E+ A+      N R+K 
Sbjct: 899  EKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQE-EIKEYKARLTCPCCNTRKKD 957

Query: 480  Y-----FFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515
                  F V   +C+R RYE RQRKCPKCNA   A+D+HR+Y+
Sbjct: 958  AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/283 (47%), Positives = 173/283 (61%), Gaps = 59/283 (20%)

Query: 291  KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ 350
            KK+AD +A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFEDMQEQN RLLQQ
Sbjct: 719  KKIADGDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQ 778

Query: 351  LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL 410
            LREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A    ++KLEEKER L
Sbjct: 779  LREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERAL 838

Query: 411  QTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL--------------------- 449
            Q  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L                     
Sbjct: 839  QGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAR 898

Query: 450  --------------------------VIIYTNGPARLEFGKDREFSAKFV----NFRRKS 479
                                      V +Y +    L+  + +E+ A+      N R+K 
Sbjct: 899  EKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQE-EIKEYKARLTCPCCNTRKKD 957

Query: 480  Y-----FFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL 515
                  F V   +C+R RYE RQRKCPKCNA   A+D+HR+Y+
Sbjct: 958  AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1 SV=2

 Score =  213 bits (542), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/281 (47%), Positives = 174/281 (61%), Gaps = 57/281 (20%)

Query: 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352
           +ADE+A+RKI+ +E+Q   LQK++A  KQEEEALL+EM+VTGQAFEDMQEQN RL+QQLR
Sbjct: 693 MADEDALRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLR 752

Query: 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
           EKDDANFKLM+ERIKSNQ+HKL +EEK+ L +QV  L  Q++A    +RKLEEKE  LQ+
Sbjct: 753 EKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQS 812

Query: 413 VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVI-----------IYTNGPA--- 458
            +   EKEL LR QA+++NKRKA+E+AQ A DLK  L +           I  N      
Sbjct: 813 NIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEK 872

Query: 459 -----------------RLEFGKD---------------REFSAKFV----NFRRKSY-- 480
                            +LE  K                +++ A+      N R+K    
Sbjct: 873 DLFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVL 932

Query: 481 ---FFVEFLDCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
              F V   +C++TRY+TRQRKCPKCNA   AND+HR+Y+G
Sbjct: 933 TKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG 973

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes. Recruited to the MDM2 promoter, probably by being recruited by p53/TP53, and thereby acts as a transcriptional coactivator.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1 SV=2

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/281 (47%), Positives = 174/281 (61%), Gaps = 57/281 (20%)

Query: 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352
           +ADE+A+RKI+ +E+Q   LQK++A  KQEEEALL+EM+VTGQAFEDMQEQN RL+QQLR
Sbjct: 695 MADEDALRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLR 754

Query: 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
           EKDDANFKLM+ERIKSNQ+HKL +EEK+ L +QV  L  Q++A    +RKLEEKE  LQ+
Sbjct: 755 EKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQS 814

Query: 413 VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVI-----------IYTNGPA--- 458
            +   EKEL LR QA+++NKRKA+E+AQ A DLK  L +           I  N      
Sbjct: 815 NIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEK 874

Query: 459 -----------------RLEFGKD---------------REFSAKFV----NFRRKSY-- 480
                            +LE  K                +++ A+      N R+K    
Sbjct: 875 DMFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVL 934

Query: 481 ---FFVEFLDCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
              F V   +C++TRY+TRQRKCPKCNA   AND+HR+Y+G
Sbjct: 935 TKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG 975

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes. Recruited to the MDM2 promoter, probably by being recruited by p53/TP53, and thereby acts as a transcriptional coactivator.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/281 (47%), Positives = 174/281 (61%), Gaps = 57/281 (20%)

Query: 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352
           +ADE+A+RKI+ +E+Q   LQK++A  KQEEEALL+EM+VTGQAFEDMQEQN RL+QQLR
Sbjct: 695 MADEDALRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLR 754

Query: 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
           EKDDANFKLM+ERIKSNQ+HKL +EEK+ L +QV  L  Q++A    +RKLEEKE  LQ+
Sbjct: 755 EKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQS 814

Query: 413 VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVI-----------IYTNGPA--- 458
            +   EKEL LR QA+++NKRKA+E+AQ A DLK  L +           I  N      
Sbjct: 815 NIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLEMAQKKLHDFQDEIVENSVTKEK 874

Query: 459 -----------------RLEFGKD---------------REFSAKFV----NFRRKSY-- 480
                            +LE  K                +++ A+      N R+K    
Sbjct: 875 DMFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVL 934

Query: 481 ---FFVEFLDCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
              F V   +C++TRY+TRQRKCPKCNA   AND+HR+Y+G
Sbjct: 935 TKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG 975

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes. Recruited to the MDM2 promoter, probably by being recruited by p53/TP53, and thereby acts as a transcriptional coactivator.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2 SV=1

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 127/157 (80%)

Query: 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR 352
           +ADE+A+RKI+ +E+Q   LQK++A  KQEEEALL+EM+VTGQAFEDMQEQN RL+QQLR
Sbjct: 704 MADEDALRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLR 763

Query: 353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT 412
           EKDDANFKLM+ERIKSNQ+HKL +EEK+ L +QV  L  Q++A    +RKLEEKE  LQ+
Sbjct: 764 EKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQS 823

Query: 413 VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
            +   EKEL LR QA+++NKRKA+++AQ A DLK  L
Sbjct: 824 SIGTGEKELGLRTQALEMNKRKAMDAAQLADDLKTQL 860

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively).

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
193678945	953	PREDICTED: e3 ubiquitin-protein ligase B	0.520	0.282	0.527	7e-78
345483701	955	PREDICTED: E3 ubiquitin-protein ligase B	0.471	0.255	0.554	3e-77
350402387	957	PREDICTED: E3 ubiquitin-protein ligase B	0.471	0.254	0.551	2e-76
383857052	957	PREDICTED: E3 ubiquitin-protein ligase B	0.471	0.254	0.551	2e-76
328778821	930	PREDICTED: e3 ubiquitin-protein ligase B	0.471	0.262	0.551	2e-76
340711825	957	PREDICTED: e3 ubiquitin-protein ligase B	0.471	0.254	0.551	2e-76
307199111	957	E3 ubiquitin-protein ligase Bre1 [Harpeg	0.471	0.254	0.548	7e-76
332020263	676	E3 ubiquitin-protein ligase Bre1 [Acromy	0.471	0.360	0.548	1e-75
321469893	958	hypothetical protein DAPPUDRAFT_188104 [	0.450	0.243	0.555	1e-74
307180966	964	E3 ubiquitin-protein ligase Bre1 [Campon	0.471	0.253	0.534	1e-73

>gi|193678945|ref|XP_001949533.1| PREDICTED: e3 ubiquitin-protein ligase Bre1-like [Acyrthosiphon pisum]

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 174/330 (52%), Positives = 204/330 (61%), Gaps = 61/330 (18%)

Query: 249 MSFYKSRWFDFRS---LSDSASNIYGSLEFRKFACV-VRDSKRDERKKLADEEAMRKIKQ 304
           +  YK    D R    L  +   +   LE  K A   +++ KR+ERKKLADE+A+RKIKQ
Sbjct: 624 LDMYKGVSKDQRDKVQLMAAEKKLRAELEEAKQALKKIQEGKREERKKLADEDALRKIKQ 683

Query: 305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE 364
           LE+   QLQKQVATHKQEEEA+L+EMEVTGQAFEDMQEQNSRL+QQLREKDDANFKLMTE
Sbjct: 684 LEEHIVQLQKQVATHKQEEEAMLSEMEVTGQAFEDMQEQNSRLIQQLREKDDANFKLMTE 743

Query: 365 RIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424
           RIKSNQLHK+AREE DTL+E ++ L+ Q+E  +T +RKLEEKER LQ  L   EKE  +R
Sbjct: 744 RIKSNQLHKMAREETDTLKELIKTLTNQVEMTNTVVRKLEEKERILQNSLATVEKECSIR 803

Query: 425 NQAMDLNKRKAIESAQSAADLKLHL------------VIIYTNGPARLEFGKDREFSAKF 472
            QAM+++KRKAIESAQSAADLKLHL            V+         E  K +    + 
Sbjct: 804 QQAMEMHKRKAIESAQSAADLKLHLDKYHAQMKEAQQVVTEKTSALEAEAYKTKRLQEEI 863

Query: 473 VNFRRKS-------------YFFVEFL------------------------------DCL 489
           V  RRK+                VE +                              DCL
Sbjct: 864 VQLRRKTERMKKIEQAGTLDEVMVEEIREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCL 923

Query: 490 RTRYETRQRKCPKCNA--KANDYHRLYLGS 517
           RTRYETRQRKCPKCNA   ANDYHRLYLGS
Sbjct: 924 RTRYETRQRKCPKCNATFGANDYHRLYLGS 953

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483701|ref|XP_001601663.2| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Nasonia vitripennis]

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 167/301 (55%), Positives = 190/301 (63%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           E R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVAT KQEEEALLNEMEVT
Sbjct: 655 ELRQQIKKIQESKREERKKLADEDAQNKIKKLEEQAYSLQRQVATQKQEEEALLNEMEVT 714

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 715 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTTQV 774

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL LR QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 775 EAANVVVRKLEEKERLLQNSLATVEKELALRQQAMEMHKRKAIESAQSAADLKLHLEKYH 834

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 835 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETVDEVMAEELRE 894

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 895 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 954

Query: 517 S 517
           +
Sbjct: 955 T 955

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402387|ref|XP_003486466.1| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Bombus impatiens]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 190/301 (63%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           E R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVA+ KQEEEALLNEMEVT
Sbjct: 657 ELRQQIKKIQESKREERKKLADEDAQIKIKKLEEQAYTLQRQVASQKQEEEALLNEMEVT 716

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 717 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTTQV 776

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL LR QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 777 EAANVVVRKLEEKERLLQNSLATVEKELALRQQAMEMHKRKAIESAQSAADLKLHLEKYH 836

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 837 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVMAEELRE 896

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 897 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 956

Query: 517 S 517
           +
Sbjct: 957 T 957

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857052|ref|XP_003704020.1| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Megachile rotundata]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 190/301 (63%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           E R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVA+ KQEEEALLNEMEVT
Sbjct: 657 ELRQQIKKIQESKREERKKLADEDAQIKIKKLEEQAYTLQRQVASQKQEEEALLNEMEVT 716

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 717 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTAQV 776

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL LR QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 777 EAANVVVRKLEEKERLLQNSLATVEKELALRQQAMEMHKRKAIESAQSAADLKLHLEKYH 836

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 837 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVMAEELRE 896

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 897 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 956

Query: 517 S 517
           +
Sbjct: 957 T 957

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778821|ref|XP_625025.3| PREDICTED: e3 ubiquitin-protein ligase Bre1, partial [Apis mellifera]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 190/301 (63%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           E R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVA+ KQEEEALLNEMEVT
Sbjct: 630 ELRQQLKKIQESKREERKKLADEDAQIKIKKLEEQAYTLQRQVASQKQEEEALLNEMEVT 689

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 690 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTTQV 749

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL LR QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 750 EAANVVVRKLEEKERLLQNSLATVEKELALRQQAMEMHKRKAIESAQSAADLKLHLEKYH 809

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 810 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVMAEELRE 869

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 870 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 929

Query: 517 S 517
           +
Sbjct: 930 T 930

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711825|ref|XP_003394469.1| PREDICTED: e3 ubiquitin-protein ligase Bre1-like [Bombus terrestris]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 190/301 (63%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           E R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVA+ KQEEEALLNEMEVT
Sbjct: 657 ELRQQIKKIQESKREERKKLADEDAQIKIKKLEEQAYTLQRQVASQKQEEEALLNEMEVT 716

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 717 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTTQV 776

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL LR QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 777 EAANVVVRKLEEKERLLQNSLATVEKELALRQQAMEMHKRKAIESAQSAADLKLHLEKYH 836

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 837 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVMAEELRE 896

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 897 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 956

Query: 517 S 517
           +
Sbjct: 957 T 957

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199111|gb|EFN79821.1| E3 ubiquitin-protein ligase Bre1 [Harpegnathos saltator]

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 165/301 (54%), Positives = 189/301 (62%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           + R+    +++SKR+ERKKLADE+A  KIK+LEDQ + LQ+QVA  KQEEEALLNEMEVT
Sbjct: 657 DLRQQIKKIQESKREERKKLADEDAQIKIKKLEDQAYTLQRQVACQKQEEEALLNEMEVT 716

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 717 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTTQV 776

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL +R QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 777 EAANVVVRKLEEKERLLQNSLATVEKELAVRQQAMEMHKRKAIESAQSAADLKLHLEKYH 836

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 837 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVMAEELRE 896

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 897 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 956

Query: 517 S 517
           +
Sbjct: 957 T 957

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020263|gb|EGI60697.1| E3 ubiquitin-protein ligase Bre1 [Acromyrmex echinatior]

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 165/301 (54%), Positives = 189/301 (62%), Gaps = 57/301 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
           + R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVA  KQEEEALLNEMEVT
Sbjct: 376 DLRQQVKKIQESKREERKKLADEDAQIKIKKLEEQAYTLQRQVACQKQEEEALLNEMEVT 435

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
           GQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV  L+ Q+
Sbjct: 436 GQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVSTLTTQV 495

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL---- 449
           EA +  +RKLEEKER LQ  L   EKEL LR QAM+++KRKAIESAQSAADLKLHL    
Sbjct: 496 EAANVVVRKLEEKERLLQNSLATVEKELALRQQAMEMHKRKAIESAQSAADLKLHLEKYH 555

Query: 450 --------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFFVEFL-- 486
                   V+         E  K +    +    RRK                  E L  
Sbjct: 556 SQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVMAEELRE 615

Query: 487 ----------------------------DCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                                       DCLRTRYETRQRKCPKCN    ANDYHRLYL 
Sbjct: 616 YKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDYHRLYLS 675

Query: 517 S 517
           +
Sbjct: 676 T 676

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469893|gb|EFX80871.1| hypothetical protein DAPPUDRAFT_188104 [Daphnia pulex]

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/290 (55%), Positives = 187/290 (64%), Gaps = 57/290 (19%)

Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
           +SKR+ERK+LAD+EA+RKI+ LE+  HQLQKQVA  KQEEEALLNEMEVTGQAFEDMQEQ
Sbjct: 669 ESKREERKRLADDEAVRKIRSLEEGVHQLQKQVAAQKQEEEALLNEMEVTGQAFEDMQEQ 728

Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403
           NSRL+QQLREKDDANFKLM+ERIK+ Q+HKL REEKD L EQV  L++Q+EA +  +R+L
Sbjct: 729 NSRLIQQLREKDDANFKLMSERIKAQQVHKLQREEKDMLVEQVSTLNMQVEAQNQVVRRL 788

Query: 404 EEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL------------VI 451
           EEKER LQ+ +T AEKEL LR QAM+++KRKAIESAQSAADLKLHL            V+
Sbjct: 789 EEKERLLQSSITCAEKELMLRQQAMEMHKRKAIESAQSAADLKLHLEKYHSQMKEAQQVV 848

Query: 452 IYTNGPARLEFGKDREFSAKFVNFRRKSY------------------------------- 480
               G    E  K R    +    +R+                                 
Sbjct: 849 AEKTGTLEAEAYKTRRLYEELAQVKRRVERLKKIEAAGTADEVLREELREYKDTLTCPSC 908

Query: 481 ------------FFVEFLDCLRTRYETRQRKCPKCNAK--ANDYHRLYLG 516
                       F V   DCLRTRYETRQRKCPKCNA   ANDYHRLYL 
Sbjct: 909 KVTRKDAVLTKCFHVFCFDCLRTRYETRQRKCPKCNAAFGANDYHRLYLS 958

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180966|gb|EFN68754.1| E3 ubiquitin-protein ligase Bre1 [Camponotus floridanus]

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 189/307 (61%), Gaps = 63/307 (20%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQ------EEEALL 327
           + R+    +++SKR+ERKKLADE+A  KIK+LE+Q + LQ+QVA  KQ      EEEALL
Sbjct: 658 DLRQQVKKIQESKREERKKLADEDAQIKIKKLEEQAYNLQRQVAGQKQNCVWLQEEEALL 717

Query: 328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQ 387
           NEMEVTGQAFEDMQEQNSRL+QQLREKDDANFKLMTERIKSNQLHKLAREEKD L+EQV 
Sbjct: 718 NEMEVTGQAFEDMQEQNSRLIQQLREKDDANFKLMTERIKSNQLHKLAREEKDVLKEQVS 777

Query: 388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKL 447
            L+ Q+EA +  +RKLEEKER LQ  L   EKEL +R QAM+++KRKAIESAQSAADLKL
Sbjct: 778 TLTTQVEAANVVVRKLEEKERLLQNSLATVEKELAVRQQAMEMHKRKAIESAQSAADLKL 837

Query: 448 HL------------VIIYTNGPARLEFGKDREFSAKFVNFRRK-------------SYFF 482
           HL            V+         E  K +    +    RRK                 
Sbjct: 838 HLEKYHSQMKEAQQVVAEKTSSLEAEAYKTKRLQEEIAQLRRKVERMKKIELAETLDEVM 897

Query: 483 VEFL------------------------------DCLRTRYETRQRKCPKCNAK--ANDY 510
            E L                              DCLRTRYETRQRKCPKCN    ANDY
Sbjct: 898 AEELREYKETLTCPSCKVKRKDAVLTKCFHVFCWDCLRTRYETRQRKCPKCNCAFGANDY 957

Query: 511 HRLYLGS 517
           HRLYL +
Sbjct: 958 HRLYLST 964

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
UNIPROTKB|F8W8Z4	693	RNF40 "E3 ubiquitin-protein li	0.423	0.316	0.543	4.4e-52
ZFIN|ZDB-GENE-030131-6607	1004	rnf40 "ring finger protein 40"	0.340	0.175	0.607	9.2e-52
RGD|628638	1002	Rnf40 "ring finger protein 40,	0.408	0.210	0.56	2.2e-51
UNIPROTKB|H3BP71	961	RNF40 "E3 ubiquitin-protein li	0.423	0.227	0.543	3e-51
UNIPROTKB|O75150	1001	RNF40 "E3 ubiquitin-protein li	0.423	0.218	0.543	3.6e-51
UNIPROTKB|Q5RAU7	1001	RNF40 "E3 ubiquitin-protein li	0.423	0.218	0.543	3.6e-51
UNIPROTKB|E2R1L5	1001	RNF40 "Uncharacterized protein	0.423	0.218	0.543	3.6e-51
MGI|MGI:2142048	1001	Rnf40 "ring finger protein 40"	0.423	0.218	0.543	3.6e-51
UNIPROTKB|E1BCI2	1001	RNF40 "Uncharacterized protein	0.408	0.210	0.554	4.6e-51
RGD|1311936	973	Rnf20 "ring finger protein 20,	0.423	0.225	0.519	5.2e-51

UNIPROTKB|F8W8Z4 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 125/230 (54%), Positives = 156/230 (67%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R     + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VT
Sbjct:   394 ELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVT 453

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q+
Sbjct:   454 GQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQV 513

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453
             +A    ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + 
Sbjct:   514 DAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ 573

Query:   454 TN----GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
             T      P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   574 TRLREIQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 616

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6607 rnf40 "ring finger protein 40" [Danio rerio (taxid:7955)]

 Score = 526 (190.2 bits), Expect = 9.2e-52, Sum P(2) = 9.2e-52
 Identities = 107/176 (60%), Positives = 136/176 (77%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R+    + + ++ E KKLADE+A+RKI+  E+    LQK++A  KQEEEALL+EM+VT
Sbjct:   705 ELRQRVRELEEREKKESKKLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVT 764

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQNSRL+QQLREKDDANFKLM+ERIKSNQ++KL REEK+ L +QV     Q+
Sbjct:   765 GQAFEDMQEQNSRLMQQLREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQV 824

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
             +A    ++KLEEKE  LQ+ L   EKEL LR QA++LNKRKA+E+AQ A DLK+ L
Sbjct:   825 DAQLLVVQKLEEKEGVLQSTLATLEKELALRTQALELNKRKAVEAAQLAEDLKVQL 880

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|628638 Rnf40 "ring finger protein 40, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 542 (195.9 bits), Expect = 2.2e-51, P = 2.2e-51
 Identities = 126/225 (56%), Positives = 157/225 (69%)

Query:   282 VRD-SKRDER--KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338
             +RD  +RD R  KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFE
Sbjct:   708 IRDLEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFE 767

Query:   339 DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT 398
             DMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A   
Sbjct:   768 DMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLL 827

Query:   399 AIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN--- 455
              ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + T    
Sbjct:   828 TVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLRE 887

Query:   456 -GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
               P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   888 IQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 925

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA;ISO

GO:0017075 "syntaxin-1 binding" evidence=IPI

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0033503 "HULC complex" evidence=ISO;ISS

GO:0033523 "histone H2B ubiquitination" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|H3BP71 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 540 (195.1 bits), Expect = 3.0e-51, P = 3.0e-51
 Identities = 125/230 (54%), Positives = 156/230 (67%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R     + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VT
Sbjct:   662 ELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVT 721

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q+
Sbjct:   722 GQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQV 781

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453
             +A    ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + 
Sbjct:   782 DAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ 841

Query:   454 TN----GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
             T      P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   842 TRLREIQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 884

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 540 (195.1 bits), Expect = 3.6e-51, P = 3.6e-51
 Identities = 125/230 (54%), Positives = 156/230 (67%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R     + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VT
Sbjct:   702 ELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVT 761

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q+
Sbjct:   762 GQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQV 821

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453
             +A    ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + 
Sbjct:   822 DAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ 881

Query:   454 TN----GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
             T      P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   882 TRLREIQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 924

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010390 "histone monoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043005 "neuron projection" evidence=ISS

GO:0033503 "HULC complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)]

 Score = 540 (195.1 bits), Expect = 3.6e-51, P = 3.6e-51
 Identities = 125/230 (54%), Positives = 156/230 (67%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R     + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VT
Sbjct:   702 ELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVT 761

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q+
Sbjct:   762 GQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQV 821

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453
             +A    ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + 
Sbjct:   822 DAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ 881

Query:   454 TN----GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
             T      P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   882 TRLREIQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 924

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0010390 "histone monoubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0033503 "HULC complex" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|E2R1L5 RNF40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 540 (195.1 bits), Expect = 3.6e-51, P = 3.6e-51
 Identities = 125/230 (54%), Positives = 156/230 (67%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R     + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VT
Sbjct:   702 ELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVT 761

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q+
Sbjct:   762 GQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQV 821

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453
             +A    ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + 
Sbjct:   822 DAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ 881

Query:   454 TN----GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
             T      P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   882 TRLREIQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 924

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2142048 Rnf40 "ring finger protein 40" [Mus musculus (taxid:10090)]

 Score = 540 (195.1 bits), Expect = 3.6e-51, P = 3.6e-51
 Identities = 125/230 (54%), Positives = 156/230 (67%)

Query:   274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             E R     + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VT
Sbjct:   702 ELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVT 761

Query:   334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             GQAFEDMQEQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q+
Sbjct:   762 GQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQV 821

Query:   394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIY 453
             +A    ++KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + 
Sbjct:   822 DAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ 881

Query:   454 TN----GPARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
             T      P   E    RE    F N +R      E +  LR + E +QRK
Sbjct:   882 TRLREIQPCLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 924

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0033503 "HULC complex" evidence=ISO

GO:0033523 "histone H2B ubiquitination" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BCI2 RNF40 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 539 (194.8 bits), Expect = 4.6e-51, P = 4.6e-51
 Identities = 123/222 (55%), Positives = 154/222 (69%)

Query:   282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
             + +  R E KK+ADE+A+R+I+Q E+Q   LQ+++   KQEEEALL+EM+VTGQAFEDMQ
Sbjct:   710 LEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQ 769

Query:   342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
             EQN RLLQQLREKDDANFKLM+ERIK+NQ+HKL REEKD L EQV  L  Q++A    ++
Sbjct:   770 EQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQ 829

Query:   402 KLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN----GP 457
             KLEEKER LQ  L   EKEL LR+QA++LNKRKA+E+AQ A DLK+ L  + T      P
Sbjct:   830 KLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQP 889

Query:   458 ARLEFGKDREFSAKFVNFRRKSYFFVEFLDCLRTRYETRQRK 499
                E    RE    F N +R      E +  LR + E +QRK
Sbjct:   890 CLAESRAARE-KESF-NLKRAQ----EDISRLRRKLE-KQRK 924

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1311936 Rnf20 "ring finger protein 20, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 5.2e-51, P = 5.2e-51
 Identities = 118/227 (51%), Positives = 157/227 (69%)

Query:   282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
             + D ++ E KK+ADE+A+RKI+ +E+Q   LQK++A  KQEEEALL+EM+VTGQAFEDMQ
Sbjct:   682 LEDKEKKENKKMADEDALRKIRAVEEQIEYLQKKLAVAKQEEEALLSEMDVTGQAFEDMQ 741

Query:   342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
             EQN RL+QQLREKDDANFKLM+ERIKSNQ+HKL +EEK+ L +QV  L  Q++A    +R
Sbjct:   742 EQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVDAQLQVVR 801

Query:   402 KLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN-GPARL 460
             KLEEKE  LQ+ +   EKEL LR QA+++NKRKA+E+AQ A DLK  L +        + 
Sbjct:   802 KLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQD 861

Query:   461 EFGKDREFSAK-FVNFRRKSYFFVEFLDCLRTRYETRQR--KCPKCN 504
             E  ++     K   NF+R      E +  LR + ET ++    PKC+
Sbjct:   862 EIVENSVTKEKDLFNFKRAQ----EDISRLRRKLETTKKPDNVPKCD 904

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=IEA;ISO

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA;ISO

GO:0016574 "histone ubiquitination" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=IEA;ISO

GO:0031062 "positive regulation of histone methylation" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0033503 "HULC complex" evidence=IEA;ISO

GO:0033523 "histone H2B ubiquitination" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VRP9	BRE1_DROME	6, ., 3, ., 2, ., -	0.5077	0.4680	0.2318	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	517
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-05
COG1322	448	COG1322, COG1322, Predicted nuclease of restrictio	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	1e-04
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	2e-04
TIGR03321	246	TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
pfam08647	96	pfam08647, BRE1, BRE1 E3 ubiquitin ligase	2e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02338	110	TIGR02338, gimC_beta, prefoldin, beta subunit, arc	0.001
pfam10168	717	pfam10168, Nup88, Nuclear pore component	0.001
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	0.001
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
pfam06008	263	pfam06008, Laminin_I, Laminin Domain I	0.002
pfam11180	192	pfam11180, DUF2968, Protein of unknown function (D	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
pfam00038	312	pfam00038, Filament, Intermediate filament protein	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
MTH00059	289	MTH00059, ND2, NADH dehydrogenase subunit 2; Provi	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
PRK10920	390	PRK10920, PRK10920, putative uroporphyrinogen III	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 32/151 (21%), Positives = 76/151 (50%)

Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
           EE  R++++LE Q  +L++++A  ++E E L + +E   +  E+++E+   L ++L E +
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLT 415
           +    L     K  +  +   E++  L+E+++ L  ++E     +  LE +   L+    
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 416 NAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
             E+E+    + ++  + K  E  +   +L+
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELE 855

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 27/157 (17%), Positives = 73/157 (46%)

Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
            E  +++++LE++  QL+K++    ++  AL  ++       E ++E+ ++L ++L E +
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLT 415
               +L     ++ +    A  E + L  Q++ L  +++A+  A+ +L  +   L     
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820

Query: 416 NAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452
           N  + L    + +   +R+  +  +   +L   +  +
Sbjct: 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 313 QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL---LQQLREKDDANFKLMTERIKSN 369
           +K +   K E EAL   +E      ED++ Q S+L   +Q++RE+     + ++      
Sbjct: 30  RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89

Query: 370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD 429
           +L  L  E     +E++ +L  ++  +   I KLE++   L+  L   EK L      ++
Sbjct: 90  ELRALNIEI-QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE 148

Query: 430 LNKRKAIESAQSAADLKLHLV 450
               +  E  Q  +  +  L 
Sbjct: 149 EEVAEIREEGQELSSKREELK 169

Length = 239

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 29/151 (19%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
            +  E  +   EE   ++++LE++   L++ +A  K+E E L  + +   +  E+++E+ 
Sbjct: 743 EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802

Query: 345 SRLLQQLRE-KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403
               ++L   + +             ++ +L  EE + L E++  L  ++E +   + +L
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEIEEL-EEEIEELEEKLDELEEELEELEKELEEL 861

Query: 404 EEKERFLQTVLTNAEKEL-HLRNQAMDLNKR 433
           +E+   L+      E EL  L  +  +L + 
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEE 892

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 284 DSKRDERKKLADE-EAMRKIKQLEDQTH--QLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
           +    E ++  +E E        E +     L++++A  + E   + NE+E   +  E +
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409

Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
           +E+  RL ++L +       L  E  +     +  + E + L E+++ L  Q+E +   +
Sbjct: 410 EERLERLSERLED-------LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462

Query: 401 RKLEEKERFLQTVLTNAEKEL 421
           ++LE +   LQ  L   EKEL
Sbjct: 463 KELERELAELQEELQRLEKEL 483

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 28/162 (17%), Positives = 73/162 (45%), Gaps = 4/162 (2%)

Query: 283 RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
              +  E ++   EE  + + +LE+   +L+++++   +E E L   +    +   +++ 
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR---EELAELEA 390

Query: 343 QNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK 402
           + + +  +L E       L     + ++  +  +EE   L  +++ L  ++E ++  + +
Sbjct: 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 403 LEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAAD 444
           LEE+   L+  L   E+EL    + +     K + S ++  D
Sbjct: 451 LEEQLEELRDRLKELERELAELQEELQ-RLEKELSSLEARLD 491

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 9/148 (6%)

Query: 283 RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
           R + ++E ++L +E  EA R++  LE +   L+++    +QE E L  E+E   +  +++
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS-------LQI 393
           +E+   L ++L E  +   +L  E+ +     K   EEK+ L E+++ L         +I
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907

Query: 394 EAMHTAIRKLEEKERFLQTVLTNAEKEL 421
           E +   + +LE K   L+  L   E+EL
Sbjct: 908 EKLRERLEELEAKLERLEVELPELEEEL 935

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 33/172 (19%), Positives = 74/172 (43%), Gaps = 15/172 (8%)

Query: 287 RDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ--- 343
             E K     E   ++ +LE++  +L++++ + + E E L  E+E      E+++EQ   
Sbjct: 327 ELESKLDELAE---ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383

Query: 344 -NSRLLQQLREKDDANFKLMTERIKSNQL-HKLAR-------EEKDTLREQVQALSLQIE 394
             S++ Q   +    N ++     +  +L  +  R         K     +++ L  ++E
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443

Query: 395 AMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
            +   + +L+E+   L+  L    +EL    QA+D  +R+  +       L+
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 43/200 (21%)

Query: 287 RDERKKLADEEAMRK--IKQLEDQTHQL-----QKQVATH-KQEEEALLNEMEVT----G 334
           R   +K  + E  RK   + +E     L      K  A+  K++ E  +NE+E+      
Sbjct: 507 RRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHAN 566

Query: 335 QAFEDMQEQNSRLLQQLRE-----------KDDA--NFKLMTERIK-------------- 367
           +A  + Q+   +  QQ++E           ++DA     +   R                
Sbjct: 567 KANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALE 626

Query: 368 -SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQ 426
            + +  K A  E     E+V  L+ Q  ++    RKLE +   LQ+ L  A  EL     
Sbjct: 627 QAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKA--- 683

Query: 427 AMDLNKRKAIESAQSAADLK 446
           A +  K+   ++A+ A +L+
Sbjct: 684 AEERAKKAQADAARLAEELR 703

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 22/118 (18%)

Query: 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEM-EVTGQAFEDMQEQNS-RLLQQLREKDDAN 358
           +++ L +   QL         E + L NE+ E   +   ++ +QN  +LL+ LRE  +  
Sbjct: 92  QLQLLIESLAQLS-------SEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEK- 143

Query: 359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN 416
                         +   +      E+   L  +I+ +   I++L ++   L   L  
Sbjct: 144 ------------FREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG 189

Length = 448

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 24/123 (19%), Positives = 52/123 (42%)

Query: 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF 359
             + +L  +   L ++ A  ++  E+L   +  T +  ED++EQ   L + +        
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419
           +L     +     +    E+ +L E +  L  ++E +   +R+LE K   L+  L    +
Sbjct: 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

Query: 420 ELH 422
           +L 
Sbjct: 923 KLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 32/151 (21%), Positives = 73/151 (48%), Gaps = 1/151 (0%)

Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
           +     +   E+   ++++LE++  +L++++   ++  E L  E+E   +A   ++E+  
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405
            L ++ +   +   +L  E  ++ +       E ++L ++ + L  +IE +   I +LEE
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE 842

Query: 406 KERFLQTVLTNAEKEL-HLRNQAMDLNKRKA 435
           K   L+  L   EKEL  L+ +  +L   K 
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKE 873

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 34/177 (19%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 285 SKRDERKKLADE------EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE 338
           S+    +   DE      +A RKI ++E +  QL+++    K+  E L  ++    Q  E
Sbjct: 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754

Query: 339 D----MQEQNSRLLQQLREKDDANFKLMTERIKSNQLH---KLAREEKDTLREQVQALSL 391
           +    ++E  +R+ +   E+D    +     +++   H      + E   L E+V  +  
Sbjct: 755 NVKSELKELEARIEE--LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEA 812

Query: 392 QIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL-NKRKAIESAQSAADLKL 447
           ++  +   + +L  ++ +L+      ++   L+ Q +DL  + K+IE      + K 
Sbjct: 813 RLREIEQKLNRLTLEKEYLE------KEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 21/143 (14%)

Query: 281 VVRDSKRD--ERKKL----ADEEAMRKIKQLEDQTHQ----LQKQVATHKQEEEALLNEM 330
           ++ ++K++    KK     A EE  +   +LE +  +    LQ+      Q EE L  +M
Sbjct: 37  IIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKM 96

Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR-------EEKDTLR 383
           E   +  E+++++   L  + +  D+   +L  E + + Q  +L R       E K+ L 
Sbjct: 97  ESLDKKEENLEKKEKELSNKEKNLDEKEEEL--EELIAEQREELERISGLTQEEAKEILL 154

Query: 384 EQVQALSLQIEAMHTAIRKLEEK 406
           E+V+    + EA    I+++EE+
Sbjct: 155 EEVEE-EARHEAAKL-IKEIEEE 175

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 288 DERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM--EVTGQAFEDMQEQNS 345
            E     D E+   I   +++  QL K++A  K EEE  L     E   +    ++E+  
Sbjct: 153 KEDNLKDDLES--LIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELL 210

Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT---AIRK 402
             L+      +   +L  ER K  +L K   E+   LR++++  +   E       A++ 
Sbjct: 211 ARLESKEAALEKQLRLEFEREKE-ELRKKYEEK---LRQELERQAEAHEQKLKNELALQA 266

Query: 403 LEEKERFLQTVLTNAEKELHLRNQAMD-LNKR-KAIESA 439
           +E +  F + +    E+E + R   +  LN R K +E A
Sbjct: 267 IELQREFNKEIKEKVEEERNGRLAKLAELNSRLKGLEKA 305

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 45/171 (26%)

Query: 288 DER-KKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
           D R KK+A E  +A  K ++ E +  + +++     Q+ E LL       +A E+ Q + 
Sbjct: 35  DAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT------KAKEEAQAER 88

Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE-QVQALSLQIEAMHTAIRKL 403
            RLL +                        AREE D +RE   +AL  +  A+   +R+ 
Sbjct: 89  QRLLDE------------------------AREEADEIREKWQEALRREQAALSDELRRR 124

Query: 404 EEKERFL--QTVLTN-AEKELHL--------RNQAMDLNKRKAIESAQSAA 443
              E F   + VLT+ A+ +L          R + +D +++ A+  A + +
Sbjct: 125 TGAEVFAIARKVLTDLADTDLEERMVDVFVQRLRTLDPDEKAALAEALADS 175

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Length = 246

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.6 bits (104), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 21/143 (14%)

Query: 281 VVRDSKRD--ERKKLADEEAMRKIKQLEDQTHQ--------LQKQVATHKQEEEALLNEM 330
           ++ ++K++    KK A  EA  +I +L ++  +        LQK      Q+EE L  ++
Sbjct: 43  ILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL 102

Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR-------EEKDTLR 383
           E+  +  E+++++   L Q+ +E +    +L  E +   QL +L R       E K+ L 
Sbjct: 103 ELLEKREEELEKKEKELEQKQQELEKKEEEL--EELIEEQLQELERISGLTAEEAKEILL 160

Query: 384 EQVQALSLQIEAMHTAIRKLEEK 406
           E+V+    + EA    I+++EE+
Sbjct: 161 EKVEE-EARHEAAVL-IKEIEEE 181

Length = 520

>gnl|CDD|192111 pfam08647, BRE1, BRE1 E3 ubiquitin ligase

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/96 (22%), Positives = 46/96 (47%)

Query: 326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385
           L  E+    +AF+++     + + +L   +    +L  E+ K++Q +  A   KD L  +
Sbjct: 1   LQKELVSLEKAFKELSSLALKKVAELTILEQKKLRLTAEKAKADQKYFAAMRSKDALDAE 60

Query: 386 VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421
            + L+ Q+      I +L++ E  L+  +   EK+L
Sbjct: 61  NKKLNTQLNKSSELIEQLKDLENELRRRIKELEKQL 96

BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions. Length = 96

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 16/133 (12%)

Query: 282 VRDSKRDE----RKKLADEEAMR-KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA 336
           VR  K  E     + L+D  + R ++ +L+ +  +LQ+++A  +++   L  E +   Q 
Sbjct: 43  VRTPKGREGWVLSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQE 102

Query: 337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM 396
              ++ +  RL ++L            +++ +N +     EE   LRE++  L  + EA+
Sbjct: 103 LSTLEAELERLQKELAR---------IKQLSANAI--ELDEENRELREELAELKQENEAL 151

Query: 397 HTAIRKLEEKERF 409
                +L+E E+ 
Sbjct: 152 EAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 27/162 (16%), Positives = 67/162 (41%), Gaps = 13/162 (8%)

Query: 282 VRDSKRDERKKLADEEA--MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339
            ++   + + +L + E+  +  +K  E++  +L++     ++ EE +    E+  +  E 
Sbjct: 247 EKERLEELKARLLEIESLELEALKIREEELRELERL---LEELEEKIERLEELEREIEEL 303

Query: 340 MQEQNSRLLQQLREKDD--ANFKLMTERIK--SNQLHKLAREEKDTLREQVQALSLQIEA 395
            +E+   L   L E ++     K + ER++    +L KL  E ++   E+ +   L  E 
Sbjct: 304 -EEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEER 362

Query: 396 MHT---AIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRK 434
           +      + +LE++       L   E+ +    + +      
Sbjct: 363 LKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 29/167 (17%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 284 DSKRDERKKLADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
           +  R+E ++L +E      ++++L  +  +L++++   + E   L  E+E   +    + 
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE--------------QVQ 387
            + SRL QQ +   +    L  +  +     +    + D L E              +++
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH-LRNQAMDLNKR 433
           +L  ++E +   + +LE +   L+  L     ++  L  Q   LN  
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 20/172 (11%)

Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348
           + K    +E  + +++ E++ ++LQ +  T + +   L  E+E    A   M+ +  R  
Sbjct: 234 DEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDRAA 293

Query: 349 QQLREKDDANFKLMTE-RIKSNQ-------LHKL------AREEKDTLREQVQALSLQIE 394
           Q+L  K      L TE    +NQ       L KL      A +EK  L+ +V AL  ++E
Sbjct: 294 QELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELE 353

Query: 395 AMHTAIRKLEEKERFLQTVLTNAEKELH-----LRNQAMDLNK-RKAIESAQ 440
             H  + K     +  Q        E+             L   +K IE+ Q
Sbjct: 354 RKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQ 405

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 34/186 (18%)

Query: 285 SKRDERKKLADEEAMRKI-------KQLEDQTHQLQKQVAT-HKQEEEAL--------LN 328
           SK  ER+K    E  RK+        +LED  ++L++Q+ +  +Q E+A         L 
Sbjct: 168 SKYKERRK----ETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELR 223

Query: 329 EME--VTGQAFEDMQEQNSRLLQQL----REKDDANFKLMTERIKSNQLHKLAREEKDTL 382
           E+E  +     E+++E+   L ++L     E ++   +L     K  +L +L   E +  
Sbjct: 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL-RLEVSELEEE 282

Query: 383 REQVQA--LSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQ 440
            E++Q    +L  E     I +LE++++ L+  L N E++L      ++  + K  E A+
Sbjct: 283 IEELQKELYALANE-----ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 441 SAADLK 446
             A+L+
Sbjct: 338 ELAELE 343

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 25/168 (14%)

Query: 264  DSASNIYGSLEFRKFACVVRDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQ 321
            ++  N   SLE            R E ++L++E  E   K  +L  +  +L++++A  + 
Sbjct: 876  EALLNERASLEEA------LALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

Query: 322  EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS--NQLHKL----- 374
              E L   ++   +   +         + L  K + + +    R+K   N++ +L     
Sbjct: 930  RLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNL 989

Query: 375  -AREEKDTLREQVQALSLQIEAMHTAIRKLEE---------KERFLQT 412
             A EE + L+E+   L+ Q E +  A   LEE         +ERF  T
Sbjct: 990  AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 32/162 (19%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
           S+ +++K++  E    ++  LE Q  +L+ Q+   + + + L  E+    +  E+++E+ 
Sbjct: 298 SRLEQQKQILRE----RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
             L  +L E +    +L +   +  +  +  R +   L  Q+ +L+ +IE +   + +LE
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 405 EKERFLQTVLTNAEKELH---LRNQAMDLN-KRKAIESAQSA 442
           ++   LQ  +    K+L    L+    +L    + +E  Q  
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE 455

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 35/193 (18%), Positives = 77/193 (39%), Gaps = 4/193 (2%)

Query: 253 KSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQL 312
           +    +      +       LE      V +  +R  +      E   +I++LE++  + 
Sbjct: 718 RKELEELSRQISALRKDLARLEAE----VEQLEERIAQLSKELTELEAEIEELEERLEEA 773

Query: 313 QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH 372
           ++++A  + E E L  ++E   +  + ++E    L  +L   ++    L        +  
Sbjct: 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK 432
                  + L EQ++ LS  IE++   I +LEE    L++ L     E     +A+ L +
Sbjct: 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893

Query: 433 RKAIESAQSAADL 445
            +  E ++   +L
Sbjct: 894 SELEELSEELREL 906

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|131391 TIGR02338, gimC_beta, prefoldin, beta subunit, archaeal

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 19/122 (15%)

Query: 297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD 356
           +   ++ QL+    QLQ  VAT KQ+ EA L E E              + L++L    D
Sbjct: 4   QVQNQLAQLQQLQQQLQA-VATQKQQVEAQLKEAE--------------KALEELERLPD 48

Query: 357 ANFKLMTERIKSNQLHKLAREE-KDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLT 415
                   +   N L K  +EE    L+E+ + L L+++ +     +L E+ + LQ  + 
Sbjct: 49  ---DTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105

Query: 416 NA 417
            A
Sbjct: 106 EA 107

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related. Length = 110

>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 27/151 (17%), Positives = 73/151 (48%), Gaps = 15/151 (9%)

Query: 290 RKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ 349
           +  LA EE  R++K L+ Q  +  + +   ++E ++L    E   + FE+ +     L+ 
Sbjct: 555 KHDLAREEFQRRVKLLQLQKEKQLEDIQDCREERKSLSERAEKLAEKFEEAKYNQELLVN 614

Query: 350 QLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF 409
           + +       +L+  +  ++QL  L+  E+D + +++Q ++ Q++ +   I+++++K+ +
Sbjct: 615 RCK-------RLL--QSANSQLPVLSDSERD-MSKELQRINKQLQHLANGIKQVKKKKNY 664

Query: 410 LQTVLTNAEKELHLRNQAMDLN--KRKAIES 438
            +  +     +   +  +  L   + K I  
Sbjct: 665 QRYHM---ASQESPKKSSYTLPEKQHKTITE 692

Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells. Length = 717

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 17/111 (15%)

Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
           +R E+     +EA  ++KQ      + ++Q+A  + E   ++N  +   Q          
Sbjct: 30  ERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQ---------- 79

Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT---LREQVQALSLQI 393
           +L +++    +A      ER+  +   ++ +E++     LR+QV AL++QI
Sbjct: 80  KLKEEIL--AEAQKDA--ERLLESARAEIEQEKEQALAELRQQVAALAVQI 126

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
           EEA R+ ++LE++  Q+++ +   ++E    L E E T    E+  +Q     Q L EK 
Sbjct: 1   EEAEREQQELEERMEQMEEDMRRAQKE----LEEYEETALELEEKLKQEEEEAQLL-EKK 55

Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI-RKLEEKERFLQTVL 414
               +    R++         EE++ L  +V   + ++  +     +K  E  +      
Sbjct: 56  ADELEEENRRLEEEAAAS--EEERERLEAEVDEATAEVAKLEEEREKKEAETRQL----- 108

Query: 415 TNAEKELHLRNQAMDLNKRKAIESAQS 441
              ++EL    +A +  +++ +E+A +
Sbjct: 109 ---QQELREAQEAHERARQELLEAAAA 132

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 36/174 (20%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEV 332
           L   + A ++    ++ RK+L  EE   ++ +LE++  +LQ+++   ++E E L +E+E 
Sbjct: 222 LRELELALLLAK-LKELRKEL--EELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 333 TGQAFEDMQEQNSRLLQQLREKDD--ANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
             +  E++QE+   L +++ E +   +  +   E +++       R E+  L+E+++AL 
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEE--LKEKIEALK 336

Query: 391 LQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAAD 444
            ++E   T + +LE+    L+      E++L    + ++    +A+    +  +
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE-ELFEALREELAELE 389

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 28/159 (17%)

Query: 290 RKKLAD-----EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME------------- 331
           ++K+ +         R I + E +    ++++A  + E + LL E+E             
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352

Query: 332 -VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ--LHKLARE------EKDTL 382
               + + +++E+   L  +L E  D  F    + +K  +  L KL RE      E D L
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREINELKRELDRL 411

Query: 383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL 421
           +E++Q LS ++  ++ AI  +E K   L+    +   E+
Sbjct: 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 285 SKRDERKKLADEEAMRKIKQLEDQTH---QLQKQVATHKQEE---EALLNEMEVTGQAFE 338
            +  E ++L  EE   KI++LE+      +L++++   +      E LL +++   +  E
Sbjct: 274 EELRELERLL-EELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLE 332

Query: 339 DMQEQN---SRLLQQLREKDDANFKLMTERIKSNQLH-KLAREEKDTLREQVQALSLQIE 394
            ++E+       L++L E+ +   KL+ ER+K  +   +   +E +   E+++ L   I+
Sbjct: 333 KLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQ 392

Query: 395 AMHT-------AIRKLEEKERFLQTVLTNAEKELH 422
            +         A+ +++E+   L+  L   E+EL 
Sbjct: 393 ELKEELAELSAALEEIQEELEELEKELEELERELE 427

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 30/163 (18%), Positives = 69/163 (42%), Gaps = 22/163 (13%)

Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTH--QLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
           D +        + + ++K+++++++    +L++++   ++    L  E E   +    + 
Sbjct: 200 DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLL 259

Query: 342 EQNSRLLQQL--REKDDANFKLMTERI--KSNQLHKLARE----------------EKDT 381
           E  S  L+ L  RE++    + + E +  K  +L +L RE                E + 
Sbjct: 260 EIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEE 319

Query: 382 LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR 424
           L E++++L  ++E +   + KLE +   L        K L  R
Sbjct: 320 LLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEER 362

Length = 908

>gnl|CDD|218852 pfam06008, Laminin_I, Laminin Domain I

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 21/142 (14%)

Query: 296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD 355
           +     IK L D   ++ +++A   +      N   + G A   M  +  R+L ++RE+D
Sbjct: 89  KTLAEAIKNLRDNIKEILEKLAGLGE------NAFALPGSALSRMLAEAQRMLGEIRERD 142

Query: 356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR--------KLEEKE 407
                   +   +    K A E  + ++   Q    + E +  A+R        KL +  
Sbjct: 143 -----FQKQLQNAEAELKAAEELLNRVQTWFQTPQEENEGLFEALRDDLNEYEAKLSDLR 197

Query: 408 RFLQTVL--TNAEKELHLRNQA 427
             L      T   + L+L NQ 
Sbjct: 198 ELLDEAQAKTRDAERLNLANQK 219

coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure. Length = 263

>gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 34/114 (29%)

Query: 293 LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ--NSRLLQQ 350
           LAD E  R   QLE Q  QL++Q+A  +   E L  ++++        QEQ   +R  Q 
Sbjct: 100 LADVEIRRA--QLEAQKAQLERQIAASEARAERLQADLQLAQA-----QEQQVAARQQQ- 151

Query: 351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
                                   AR+E   L  Q QA   Q+  +   IR+L+
Sbjct: 152 ------------------------ARQEAVALEAQRQAAQAQLRKLQRQIRQLQ 181

This family of proteins has no known function. Length = 192

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 282 VRDSKRDERKKLADEEAMRKIKQ-LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
           ++    +E ++   +E  R+ +  L++Q  + +K+    ++E E  L E E   +  E +
Sbjct: 52  LKALAEEEERERKRKEERREGRAVLQEQIEEREKR---RQEEYEERLQEREQMDEIIERI 108

Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
           QE++    Q+ REK     KL  E  + N+     +E      E+ +    +   +    
Sbjct: 109 QEEDEAEAQEKREKQK---KLREEIDEFNEERIERKE------EEKEREREEELKILEYQ 159

Query: 401 RKLEEKER 408
           R+  E+E 
Sbjct: 160 REKAEREE 167

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 282 VRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
           +RD   + R  +A +    + + L +    L+++    ++E   L +E+E   +A ED +
Sbjct: 326 LRDRLEECR--VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR 383

Query: 342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
           E+   L +++ E  +       +   +    +  REE+D LRE+   L   +      + 
Sbjct: 384 EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443

Query: 402 KLEE 405
           + E 
Sbjct: 444 EAEA 447

Length = 880

>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 34/170 (20%), Positives = 76/170 (44%), Gaps = 35/170 (20%)

Query: 291 KKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT----------------- 333
           +K  DE  + ++  LE +   LQ+++A  K+  E  + E++                   
Sbjct: 109 RKDLDEATLARV-DLEMKIESLQEELAFLKKNHEEEVRELQSQIQGQVNVEMDAARKLDL 167

Query: 334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERI-----KSNQLHKLAREEKDTLREQVQA 388
            +A  +++ Q   L ++ R++ +  +K   E +     ++    + A+EE   LR Q+Q+
Sbjct: 168 TKALAEIRAQYEELAEKNRQEAEEWYKSKLEELQQAAARNGDALRSAKEEITELRRQIQS 227

Query: 389 LSLQIEAMHTAIRKLEE-----KERF------LQTVLTNAEKEL-HLRNQ 426
           L ++++++      LE      +ER+       Q  ++  E+EL  L+ +
Sbjct: 228 LEIELQSLKKQKASLERQLAELEERYELELADYQDTISELEEELQQLKAE 277

Length = 312

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/103 (21%), Positives = 51/103 (49%)

Query: 320 KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK 379
           ++E E L  ++E   +   ++++  + L ++L E ++   +L  E  + ++     R++ 
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH 422
             L  +V+ L  +I  +   + +LE +   L+  L  AE+EL 
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|177131 MTH00059, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 118 FGIFRLSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFVYHCFSIFRFSSSTVFV 177
           FG+F      +VY  FS    +SS V ++    + +F      ++ CF +     S VFV
Sbjct: 96  FGLFPFM--FWVYRVFS----NSSWVVIWLISVVMKFP----VLFFCFFLQGGGLSLVFV 145

Query: 178 YHCFSIFRFSSSTVFVY-----HCFSIFRFSSSTVFVYHCFSIFRFSSSTIFVYHCF 229
               +I  F     + Y     + +     SSS   V  CF +       +++Y+ F
Sbjct: 146 DCFLTIL-FCGFLFWFYSLNWEYVWCHISLSSSATLVVACFCLSIDLCFFLYLYYFF 201

Length = 289

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 29/209 (13%)

Query: 265 SASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEE 324
            AS +  ++    F+    D +  + +K       +KI++ +DQ  +L+KQ+ + + E  
Sbjct: 18  LASLLSAAVLAAAFSAAADDKQLKQIQK-EIAALEKKIREQQDQRAKLEKQLKSLETEIA 76

Query: 325 AL---LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERI--------------- 366
           +L   L E     +         +  L  L  ++    + + E++               
Sbjct: 77  SLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALL 136

Query: 367 -------KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419
                  +S +L            E++ AL   ++ +     ++  ++  L T+L+    
Sbjct: 137 VSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRA 196

Query: 420 ELHLRNQAMDLNKRKAIESAQSAADLKLH 448
           +      A  L +RK    AQ  ++L   
Sbjct: 197 Q--QAKLAQLLEERKKTL-AQLNSELSAD 222

Length = 420

>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK 354
            L +Q   LQK   + KQE E +L +           Q   ++ L +L++K
Sbjct: 71  ALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQK 121

Length = 390

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 37/208 (17%)

Query: 252 YKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKI-KQLEDQTH 310
            K      R   D        L   + A +    +  ER+  A E  +  + +Q+E+ + 
Sbjct: 794 LKEELKALREALDELRAELTLLN-EEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 311 Q----------LQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFK 360
                      L++ +   + E EALLNE        E +    S L             
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERA---SLEEALALLRSEL------------- 896

Query: 361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE 420
                  S +L +L   ++  LR +++ L  ++  +   +  LE +   LQ  L+    E
Sbjct: 897 ----EELSEELREL-ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS----E 947

Query: 421 LHLRNQAMDLNKRKAIESAQSAADLKLH 448
            +             IE  +  A  +L 
Sbjct: 948 EYSLTLEEAEALENKIEDDEEEARRRLK 975

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
            R  +K       + +I+ LE +  +  ++     QE   L NE+E          E   
Sbjct: 195 LRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELE----------EAQR 244

Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQ----------ALSLQIEA 395
            L    ++       L  ER +  +  K     +   R Q++           +   +++
Sbjct: 245 SLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDS 304

Query: 396 MHTAIRKLEEKERFLQT--VLTNAEKEL--HLRNQAMDLNKRKAIESAQSAADLK 446
               ++K E+ ++   T   L   +KEL   L   A+     K I +  +  D  
Sbjct: 305 TKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKP 359

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
KOG0978|consensus	698		100.0
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	99.72
KOG0320|consensus	187		99.05
KOG0978|consensus	698		98.47
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.46
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.42
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.41
PRK02224	880	chromosome segregation protein; Provisional	98.39
KOG0823|consensus	230		98.37
PRK02224	880	chromosome segregation protein; Provisional	98.37
KOG0317|consensus	293		98.35
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.29
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.28
PRK11637	428	AmiB activator; Provisional	98.22
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.21
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.2
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.16
PRK11637	428	AmiB activator; Provisional	98.13
KOG0971|consensus	1243		98.07
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.06
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.03
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.01
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.01
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.0
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.0
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.99
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.95
PRK03918	880	chromosome segregation protein; Provisional	97.91
PRK04778	569	septation ring formation regulator EzrA; Provision	97.9
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.87
KOG0161|consensus	1930		97.87
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.82
KOG2164|consensus	513		97.82
PHA02562	562	46 endonuclease subunit; Provisional	97.8
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.77
PF14634	44	zf-RING_5: zinc-RING finger domain	97.72
KOG0161|consensus	1930		97.71
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.71
KOG0963|consensus	629		97.7
KOG0250|consensus	1074		97.7
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.69
PHA02562	562	46 endonuclease subunit; Provisional	97.69
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.66
KOG0250|consensus	1074		97.64
KOG0996|consensus	1293		97.59
KOG1029|consensus	1118		97.57
PRK09039	343	hypothetical protein; Validated	97.55
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.55
PHA02926	242	zinc finger-like protein; Provisional	97.51
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.48
PRK04863	1486	mukB cell division protein MukB; Provisional	97.48
KOG4673|consensus	961		97.48
KOG1029|consensus	1118		97.45
PHA02929	238	N1R/p28-like protein; Provisional	97.42
PRK03918	880	chromosome segregation protein; Provisional	97.4
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.39
KOG0971|consensus	1243		97.39
KOG0976|consensus	1265		97.38
KOG0996|consensus	1293		97.37
PRK04863	1486	mukB cell division protein MukB; Provisional	97.36
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.34
KOG0933|consensus	1174		97.28
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.28
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.28
PRK09039	343	hypothetical protein; Validated	97.27
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.26
COG4372	499	Uncharacterized protein conserved in bacteria with	97.21
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.18
KOG0612|consensus	1317		97.18
KOG0977|consensus	546		97.17
PRK01156	895	chromosome segregation protein; Provisional	97.16
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.15
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.15
KOG4674|consensus	1822		97.14
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.13
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	97.13
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.12
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.11
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.1
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.09
KOG0933|consensus	1174		97.09
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.07
KOG0999|consensus	772		97.06
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.01
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.01
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.99
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	96.99
KOG0994|consensus	1758		96.99
PRK04778	569	septation ring formation regulator EzrA; Provision	96.97
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.97
KOG0982|consensus	502		96.96
COG4372	499	Uncharacterized protein conserved in bacteria with	96.95
KOG0980|consensus	980		96.93
KOG4360|consensus	596		96.92
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.92
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.89
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.88
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.87
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.84
KOG0980|consensus	980		96.81
PRK11281	1113	hypothetical protein; Provisional	96.81
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.81
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.8
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.8
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.79
KOG0964|consensus	1200		96.78
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.76
KOG4674|consensus	1822		96.73
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.7
PRK11281	1113	hypothetical protein; Provisional	96.7
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.66
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.66
KOG4673|consensus	961		96.65
KOG0976|consensus	1265		96.63
KOG2177|consensus	386		96.61
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.6
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	96.59
KOG0018|consensus	1141		96.56
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.55
KOG0311|consensus	381		96.54
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.53
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.52
KOG0999|consensus	772		96.48
PRK01156	895	chromosome segregation protein; Provisional	96.44
PRK10361	475	DNA recombination protein RmuC; Provisional	96.43
KOG0963|consensus	629		96.42
KOG0995|consensus	581		96.36
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.32
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.32
KOG0977|consensus	546		96.3
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.3
KOG0612|consensus	1317		96.3
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.29
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.21
KOG0979|consensus	1072		96.18
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	96.17
COG4477	570	EzrA Negative regulator of septation ring formatio	96.16
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.14
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.11
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.1
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.09
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.07
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.07
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.07
KOG0287|consensus	442		96.01
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.98
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.92
KOG0964|consensus	1200		95.92
KOG4643|consensus	1195		95.88
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.86
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.86
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.85
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.82
KOG0979|consensus	1072		95.82
KOG4807|consensus	593		95.8
KOG1103|consensus	561		95.79
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.79
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.74
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.73
KOG0802|consensus	543		95.65
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.55
KOG2879|consensus	298		95.51
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.5
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.5
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	95.49
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	95.37
KOG0995|consensus	581		95.32
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	95.26
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.24
COG5152	259	Uncharacterized conserved protein, contains RING a	95.23
KOG4172|consensus	62		95.22
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.15
KOG4807|consensus	593		95.07
PF13514	1111	AAA_27: AAA domain	95.06
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	95.06
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	95.03
COG4477	570	EzrA Negative regulator of septation ring formatio	95.02
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	95.02
KOG0804|consensus	493		95.01
KOG0804|consensus	493		94.93
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.92
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	94.91
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.86
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.84
PF04641	260	Rtf2: Rtf2 RING-finger	94.83
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.83
PRK11519	719	tyrosine kinase; Provisional	94.81
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.8
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.8
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.8
KOG0249|consensus	916		94.79
KOG1853|consensus	333		94.77
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	94.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.71
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.69
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.68
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.66
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	94.63
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	94.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.6
KOG1937|consensus	521		94.56
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.55
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.53
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	94.53
KOG2660|consensus	331		94.48
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.45
KOG0946|consensus	970		94.43
KOG4643|consensus	1195		94.41
PRK10246	1047	exonuclease subunit SbcC; Provisional	94.37
PRK10884	206	SH3 domain-containing protein; Provisional	94.34
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.34
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.23
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.21
KOG0163|consensus	1259		94.2
KOG4628|consensus	348		94.13
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.1
COG3206	458	GumC Uncharacterized protein involved in exopolysa	94.0
KOG0946|consensus	970		93.99
KOG0962|consensus	1294		93.99
KOG0962|consensus	1294		93.99
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.89
PRK10698	222	phage shock protein PspA; Provisional	93.82
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.73
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.67
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	93.66
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.6
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.55
KOG0288|consensus	459		93.53
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.53
COG3206	458	GumC Uncharacterized protein involved in exopolysa	93.51
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	93.5
KOG0018|consensus	1141		93.5
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	93.47
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.45
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.41
KOG1003|consensus	205		93.4
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.36
PF13514	1111	AAA_27: AAA domain	93.35
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	93.34
KOG0249|consensus	916		93.31
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	93.26
KOG1853|consensus	333		93.21
PF13166	712	AAA_13: AAA domain	93.19
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	93.15
PF00901	508	Orbi_VP5: Orbivirus outer capsid protein VP5; Inte	93.15
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.13
PRK10869	553	recombination and repair protein; Provisional	93.12
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	93.09
KOG4593|consensus	716		93.05
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.05
KOG0825|consensus	1134		93.03
KOG0243|consensus	1041		93.0
KOG3039|consensus	303		92.92
KOG0243|consensus	1041		92.92
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.81
KOG0288|consensus	459		92.78
PF15294	278	Leu_zip: Leucine zipper	92.77
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.64
KOG1265|consensus	1189		92.63
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.51
KOG1937|consensus	521		92.38
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.32
KOG1813|consensus	313		92.3
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.26
KOG4360|consensus	596		92.23
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	92.09
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	92.02
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.91
COG5185	622	HEC1 Protein involved in chromosome segregation, i	91.56
KOG0993|consensus	542		91.52
KOG0297|consensus	391		91.46
KOG3564|consensus	604		91.35
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	91.28
KOG1571|consensus	355		91.26
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	91.26
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	91.24
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.18
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.13
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	91.12
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	90.95
COG3524	372	KpsE Capsule polysaccharide export protein [Cell e	90.82
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	90.75
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	90.75
KOG1002|consensus	791		90.74
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	90.66
KOG1785|consensus	563		90.63
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	90.59
KOG4159|consensus	398		90.57
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	90.56
KOG0298|consensus	1394		90.5
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.44
PRK12704	520	phosphodiesterase; Provisional	90.43
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	90.4
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.39
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	90.35
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	90.27
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	90.25
PRK10361	475	DNA recombination protein RmuC; Provisional	90.16
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	90.11
PRK10884	206	SH3 domain-containing protein; Provisional	90.08
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	89.91
KOG4265|consensus	349		89.68
KOG2129|consensus	552		89.67
KOG1039|consensus	344		89.58
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.48
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	89.41
KOG1850|consensus	391		89.4
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	89.34
KOG0824|consensus	324		89.33
PRK03598	331	putative efflux pump membrane fusion protein; Prov	89.21
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	89.0
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	88.97
PLN03188	1320	kinesin-12 family protein; Provisional	88.83
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	88.8
COG2433	652	Uncharacterized conserved protein [Function unknow	88.77
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.68
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	88.67
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.67
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	88.66
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.55
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	88.55
KOG4677|consensus	554		88.51
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.16
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	88.02
KOG1003|consensus	205		87.83
PF13166	712	AAA_13: AAA domain	87.79
KOG0982|consensus	502		87.76
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	87.44
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.34
COG5283	1213	Phage-related tail protein [Function unknown]	87.32
COG4717	984	Uncharacterized conserved protein [Function unknow	87.28
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	87.21
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	87.08
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.03
KOG2930|consensus	114		86.89
PRK11519	719	tyrosine kinase; Provisional	86.88
KOG4593|consensus	716		86.83
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	86.8
KOG2751|consensus	447		86.8
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	86.72
PRK00409	782	recombination and DNA strand exchange inhibitor pr	86.62
KOG2129|consensus	552		86.58
KOG1962|consensus	216		86.49
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	86.46
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	86.34
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	86.24
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.22
KOG1941|consensus	518		85.9
COG2433	652	Uncharacterized conserved protein [Function unknow	85.85
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	85.64
PF05300	187	DUF737: Protein of unknown function (DUF737); Inte	85.49
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	85.46
KOG4275|consensus	350		85.38
TIGR02231	525	conserved hypothetical protein. This family consis	85.27
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	85.11
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	85.05
PRK10869	553	recombination and repair protein; Provisional	84.99
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	84.83
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.73
KOG4460|consensus	741		84.72
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	84.58
KOG3091|consensus	508		84.44
KOG0826|consensus	357		84.29
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.22
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	84.2
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	84.16
KOG3970|consensus	299		84.07
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	84.01
KOG4302|consensus	660		84.01
KOG4572|consensus	1424		84.0
PRK15374	593	pathogenicity island 1 effector protein SipB; Prov	83.98
KOG4438|consensus	446		83.92
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	83.89
KOG1814|consensus	445		83.83
PRK10698	222	phage shock protein PspA; Provisional	83.74
KOG1899|consensus	861		83.67
KOG4787|consensus	852		83.62
KOG2114|consensus	933		82.95
PF06248	593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	82.86
KOG4809|consensus	654		82.85
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	82.71
cd08915	342	V_Alix_like Protein-interacting V-domain of mammal	82.68
KOG2264|consensus	907		82.63
KOG1962|consensus	216		82.6
PRK15136	390	multidrug efflux system protein EmrA; Provisional	82.58
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	82.56
KOG4302|consensus	660		82.37
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	82.18
KOG0742|consensus	630		82.09
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	82.0
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	81.99
PRK09343	121	prefoldin subunit beta; Provisional	81.96
PLN02939	977	transferase, transferring glycosyl groups	81.86
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	81.82
KOG2817|consensus	394		81.71
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	81.55
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	81.52
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	81.36
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	81.01
KOG1001|consensus	674		80.84
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.83
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	80.76
KOG4552|consensus	272		80.53
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	80.46
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.36
KOG4403|consensus	575		80.06

>KOG0978|consensus

Probab=100.00  E-value=1.3e-44  Score=394.36  Aligned_cols=271  Identities=42%  Similarity=0.529  Sum_probs=243.2

Q ss_pred             eecchhhhHHH-HHHhHhhhhcCCccccc-----ccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10797        241 SICTSAFQMSF-YKSRWFDFRSLSDSASN-----IYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQ  313 (517)
Q Consensus       241 ~~~~a~~~~~a-l~~~l~~~~~~~d~~~~-----i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr  313 (517)
                      .+..+.+++.. ++..++++.+.|+.+.+     ...|. .++++++.+.+.++.+.++++++|+.++|+..+++++.|+
T Consensus       364 di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lq  443 (698)
T KOG0978|consen  364 DILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQ  443 (698)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHH
Confidence            34556667766 88999999999999888     55555 8999999999999999999999999999999999999998


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        314 KQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       314 ~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      ...+..+    +|.+|+++||+||++||+||++++++++++||+|+|||.|++++.|+|+.++++++.++.++.+++.++
T Consensus       444 k~~~~~k----~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~  519 (698)
T KOG0978|consen  444 KKEKNFK----CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASV  519 (698)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776655    999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H
Q psy10797        394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVI---------------------I  452 (517)
Q Consensus       394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLee---------------------l  452 (517)
                      ++....|.+|+|+++.++.....+.+++..++++++.+++++.++.+...+|+.+++.                     +
T Consensus       520 ~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~  599 (698)
T KOG0978|consen  520 DKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIE  599 (698)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987761                     0


Q ss_pred             Hhc---chhh-------hhcccc-------------------cccccccccccccc-----cccccchhhHHHHHhhhcc
Q psy10797        453 YTN---GPAR-------LEFGKD-------------------REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQR  498 (517)
Q Consensus       453 ~Ek---~~a~-------LEKLKk-------------------~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R  498 (517)
                      ..+   .+.+       ++++++                   ..++|++|++||||     |||+||.+||++||++|+|
T Consensus       600 ~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqR  679 (698)
T KOG0978|consen  600 KFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQR  679 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence            011   1111       333322                   34689999999999     9999999999999999999


Q ss_pred             CCCCCCC--CCCCceEeec
Q psy10797        499 KCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       499 KCP~C~~--~~~Dv~rIyl  515 (517)
                      |||+||+  |+|||++|||
T Consensus       680 KCP~Cn~aFganDv~~I~l  698 (698)
T KOG0978|consen  680 KCPKCNAAFGANDVHRIHL  698 (698)
T ss_pred             CCCCCCCCCCcccccccCC
Confidence            9999999  9999999997

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=99.72  E-value=7.3e-17  Score=139.29  Aligned_cols=96  Identities=29%  Similarity=0.397  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       326 LlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      |.+||+.|++||++.+.++..|+.+++.+|++..||.+|+.||||+||++|+.+|++..+++.|+.++.++++.|.+|+|
T Consensus         1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~   80 (96)
T PF08647_consen    1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE   80 (96)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10797        406 KERFLQTVLTNAEKEL  421 (517)
Q Consensus       406 ~Er~L~~kLs~lEKEL  421 (517)
                      .|+.+..+|.++|||+
T Consensus        81 ~E~~~~~~l~~~Eke~   96 (96)
T PF08647_consen   81 TEKEFVRKLKNLEKEL   96 (96)
T ss_pred             HHHHHHHHHHHhhccC
Confidence            9999999999999874

>KOG0320|consensus

Probab=99.05  E-value=5.5e-11  Score=113.34  Aligned_cols=49  Identities=20%  Similarity=0.483  Sum_probs=44.3

Q ss_pred             cccccccccccccc-------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797        466 REFSAKFVNFRRKS-------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl  515 (517)
                      .-|+|++|.+...+       |||+||..||++.+.+ .++||+|++  ...++++|||
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L  187 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL  187 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence            44999999986544       9999999999999987 789999998  9999999997

>KOG0978|consensus

Probab=98.47  E-value=6.9e-05  Score=84.36  Aligned_cols=146  Identities=12%  Similarity=0.110  Sum_probs=118.3

Q ss_pred             HHHHHHH-HHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy10797        307 DQTHQLQ-KQVATHKQ---EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTL  382 (517)
Q Consensus       307 ~EieeLr-~kL~s~eq---e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaL  382 (517)
                      .+..+++ ..++-...   +...+..||..+.++|+.+...+...-+-+.+.++.|++|+.|+-++|++||.+|.+++..
T Consensus       415 ~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~  494 (698)
T KOG0978|consen  415 EERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKA  494 (698)
T ss_pred             HHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4444555 23333333   7788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy10797        383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK-------RKAIESAQSAADLKLHLVII  452 (517)
Q Consensus       383 e~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k-------kk~~E~sq~~~dLk~qLeel  452 (517)
                      ....+.|+....+..+.|.+++.....+...+..+|.++..++.......       ..++...+.+.++...++.+
T Consensus       495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L  571 (698)
T KOG0978|consen  495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL  571 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887765554332       33344445555666555533

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.46  E-value=4.5e-05  Score=76.46  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHH
Q psy10797        307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN---FKLMTERIKSNQLHKLAREEKDTLR  383 (517)
Q Consensus       307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n---~KL~aEK~KAdQKyfaamreKdaLe  383 (517)
                      ..+..-+..|++.+.+.++++..++.+..+++++..|-.+.=.++.+..++.   ...+ -.+|-.--|.++..+.+.+.
T Consensus        24 ~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak  102 (239)
T COG1579          24 PRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAK  102 (239)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHH
Confidence            3333455567778888888999999999999999998877755555544444   4444 55666667788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----hh
Q psy10797        384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGP----AR  459 (517)
Q Consensus       384 ~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~Ek~~----a~  459 (517)
                      .+..+|...+....+.+.++++.-..++.++..+++.+...++.++..   +.+..+...++..+.+++.++..    ..
T Consensus       103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e---~~~i~e~~~~~~~~~~~L~~~l~~ell~~  179 (239)
T COG1579         103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE---VAEIREEGQELSSKREELKEKLDPELLSE  179 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            888888888888888888888887788888888888887777776543   22333333444555555544443    23


Q ss_pred             hhccc
Q psy10797        460 LEFGK  464 (517)
Q Consensus       460 LEKLK  464 (517)
                      +|++.
T Consensus       180 yeri~  184 (239)
T COG1579         180 YERIR  184 (239)
T ss_pred             HHHHH
Confidence            66665

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.42  E-value=0.00014  Score=83.70  Aligned_cols=16  Identities=25%  Similarity=0.341  Sum_probs=9.7

Q ss_pred             hcCccccccccccchh
Q psy10797         66 LNGQNTAKRSNHLNQT   81 (517)
Q Consensus        66 ~~~~~~~~~~~~~~~~   81 (517)
                      +-|.|.+..||-+...
T Consensus        28 i~G~NGsGKS~ildAi   43 (1164)
T TIGR02169        28 ISGPNGSGKSNIGDAI   43 (1164)
T ss_pred             EECCCCCCHHHHHHHH
Confidence            4566667777665543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.41  E-value=1.4e-07  Score=91.55  Aligned_cols=50  Identities=14%  Similarity=0.284  Sum_probs=43.8

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhh---------------hccCCCCCCC--CCCCceEeec
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET---------------RQRKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t---------------R~RKCP~C~~--~~~Dv~rIyl  515 (517)
                      .++.|+||.+..++     |||+||+.||.+|+..               +..+||.|+.  ..+++.+||-
T Consensus        17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            67999999999988     9999999999999853               2358999999  8899999984

>PRK02224 chromosome segregation protein; Provisional

Probab=98.39  E-value=6.5e-05  Score=85.54  Aligned_cols=122  Identities=20%  Similarity=0.330  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      +.+..++.+++.++.++..++.+.+.+..+|..+...++.++.....+..++....+...++       +.+...+...+
T Consensus       251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l-------~~~~~~l~~k~  323 (880)
T PRK02224        251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EARREELEDRD  323 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH-------HHHHHHHHHHH
Confidence            44555556666666666666666677777777777777776655555555554443333333       33333444444


Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQI-------EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       380 daLe~Evk~Lk~Ql-------ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal  428 (517)
                      +.++.++..++..+       +...+.+..+++..+.++..+..+++++......+
T Consensus       324 ~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l  379 (880)
T PRK02224        324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV  379 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433333       33333444444444444444444444443333333

>KOG0823|consensus

Probab=98.37  E-value=1.9e-07  Score=92.40  Aligned_cols=49  Identities=24%  Similarity=0.354  Sum_probs=44.3

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhcc--CCCCCCC--CCCCceEee
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQR--KCPKCNA--KANDYHRLY  514 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R--KCP~C~~--~~~Dv~rIy  514 (517)
                      ..|-|.||.+..|+     |||+|||.||..|+..+.-  -||.|..  +...|.+||
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            66999999999999     9999999999999998643  5699999  888899998

>PRK02224 chromosome segregation protein; Provisional

Probab=98.37  E-value=0.00023  Score=81.14  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK  406 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~  406 (517)
                      ..+|..+...++.+......+-..+.+.+..+.+|..+...++.....+-..++.+..+...++..++.....+.++...
T Consensus       264 ~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~  343 (880)
T PRK02224        264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE  343 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444444444444444433333333344445555555555554444444443332


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        407 ERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       407 Er~L~~kLs~lEKEL~~l  424 (517)
                      ...+...+..+++.+..+
T Consensus       344 ~e~~~~~~~~le~~~~~l  361 (880)
T PRK02224        344 AESLREDADDLEERAEEL  361 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            233444444444444433

>KOG0317|consensus

Probab=98.35  E-value=1.8e-07  Score=95.01  Aligned_cols=46  Identities=11%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      ..+||++|.++..+     |||+||+.||.+|...+. -||.|+.  .+++|.-
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi~  290 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVIC  290 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcceee
Confidence            45899999999877     999999999999999876 6999999  7777653

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.29  E-value=3.1e-07  Score=66.77  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             cccccccccc------cccccchhhHHHHHhhhccCCCCC
Q psy10797        470 AKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKC  503 (517)
Q Consensus       470 C~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C  503 (517)
                      |+||.+.+.+      |||+||.+||.++++. +.+||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            7899998777      9999999999999988 7899998

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.28  E-value=0.00038  Score=79.83  Aligned_cols=15  Identities=0%  Similarity=0.007  Sum_probs=6.3

Q ss_pred             hhhHHHHHHhHhhhh
Q psy10797        246 AFQMSFYKSRWFDFR  260 (517)
Q Consensus       246 ~~~~~al~~~l~~~~  260 (517)
                      +.++..++..+..+.
T Consensus       676 ~~e~~~l~~~~~~l~  690 (1179)
T TIGR02168       676 RREIEELEEKIEELE  690 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK11637 AmiB activator; Provisional

Probab=98.22  E-value=0.0012  Score=70.17  Aligned_cols=19  Identities=5%  Similarity=-0.134  Sum_probs=11.1

Q ss_pred             cchhhhHHHHHHhHhhhhc
Q psy10797        243 CTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       243 ~~a~~~~~al~~~l~~~~~  261 (517)
                      ...+.+++.++..+....+
T Consensus        43 ~~~~~~l~~l~~qi~~~~~   61 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEK   61 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            3456666666666655444

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.21  E-value=0.00071  Score=77.60  Aligned_cols=12  Identities=0%  Similarity=-0.081  Sum_probs=4.7

Q ss_pred             HHHHHHhHhhhh
Q psy10797        249 MSFYKSRWFDFR  260 (517)
Q Consensus       249 ~~al~~~l~~~~  260 (517)
                      +..++..++.+.
T Consensus       672 ~~~l~~e~~~l~  683 (1179)
T TIGR02168       672 ILERRREIEELE  683 (1179)
T ss_pred             hhhHHHHHHHHH
Confidence            334444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.20  E-value=0.001  Score=65.84  Aligned_cols=175  Identities=13%  Similarity=0.211  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE  353 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E  353 (517)
                      .|..|+..+++.+.+-..++  .++.++|..++...++....+..++......-.=|+.++...+++.......-..+.+
T Consensus        40 ~l~rri~~lE~~le~~eerL--~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E  117 (237)
T PF00261_consen   40 SLQRRIQLLEEELERAEERL--EEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE  117 (237)
T ss_dssp             HHHHHHHHHHCCCHHHHCCC--CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555554444444  3444555555555555555555555544444455555555555555444444444444


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKR  433 (517)
Q Consensus       354 kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kk  433 (517)
                      -.-++..+-.+--++..+...+......|+.+++.+...+........+..+.+..+..++..++.+|.....-.+...+
T Consensus       118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~  197 (237)
T PF00261_consen  118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAER  197 (237)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444443333333333333333333333343333333333333334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10797        434 KAIESAQSAADLKLHLV  450 (517)
Q Consensus       434 k~~E~sq~~~dLk~qLe  450 (517)
                      .+..+.+.++.|...|.
T Consensus       198 ~v~~Le~~id~le~eL~  214 (237)
T PF00261_consen  198 RVKKLEKEIDRLEDELE  214 (237)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444455555555554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.16  E-value=8.8e-07  Score=67.46  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             ccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKAND  509 (517)
Q Consensus       467 e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~D  509 (517)
                      +..|.+|.+++++     |||+ ||..|+.+++. +.++||.|++..++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence            4689999999988     9999 99999999987 67899999985443

...

>PRK11637 AmiB activator; Provisional

Probab=98.13  E-value=0.0014  Score=69.80  Aligned_cols=10  Identities=0%  Similarity=-0.051  Sum_probs=3.6

Q ss_pred             hhhHHHHHHh
Q psy10797        246 AFQMSFYKSR  255 (517)
Q Consensus       246 ~~~~~al~~~  255 (517)
                      +.+++.++..
T Consensus        53 ~~qi~~~~~~   62 (428)
T PRK11637         53 QQDIAAKEKS   62 (428)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>KOG0971|consensus

Probab=98.07  E-value=0.00069  Score=77.76  Aligned_cols=205  Identities=20%  Similarity=0.232  Sum_probs=113.1

Q ss_pred             hhhhHHHHHHhHhhhhc--CCcccccc--------------------cccHHHHHHHH-------HHHhhhHHHHhhcC-
Q psy10797        245 SAFQMSFYKSRWFDFRS--LSDSASNI--------------------YGSLEFRKFAC-------VVRDSKRDERKKLA-  294 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~--~~d~~~~i--------------------~~e~elr~rlk-------~l~e~~~k~rqkla-  294 (517)
                      ..+||..|+.-|.-++.  ..|-.+.+                    ..+++|+++|.       ++.+...++.+.|+ 
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad  308 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD  308 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888887776  55554332                    23334444433       33333333344442 


Q ss_pred             ----------cHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q psy10797        295 ----------DEE-AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ--------AFEDMQEQNSRLLQQLREKD  355 (517)
Q Consensus       295 ----------d~E-al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq--------AyEdmQeQNqrklqqL~EkE  355 (517)
                                |.| +..|...|.-|++-|+.+++.++-+.+-|.+||+.=|-        -|+.+..||.|+-.-+..+.
T Consensus       309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR  388 (1243)
T KOG0971|consen  309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR  388 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence                      333 44777888888888889999999999999999987553        37889999999988777777


Q ss_pred             HHHHHHHHHhhhh-------hhhHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        356 DANFKLMTERIKS-------NQLHK-------LAREEKDTLREQVQALSLQIEAM---HTAIRKLEEKERFLQTVLTNAE  418 (517)
Q Consensus       356 D~n~KL~aEK~KA-------dQKyf-------aamreKdaLe~Evk~Lk~QlekQ---~e~I~kLeE~Er~L~~kLs~lE  418 (517)
                      |.+..-..+..|+       ++-..       .+.++.|.++..+.-|+.|+++.   .+.+.+|.|+.=.|..++--+|
T Consensus       389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLe  468 (1243)
T KOG0971|consen  389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLE  468 (1243)
T ss_pred             hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHH
Confidence            7654332222222       22222       22223333333333333444332   1344444444433444454555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy10797        419 KELHLRNQAMDLNKRKAIESA-QSAADLKLHLV  450 (517)
Q Consensus       419 KEL~~lkqale~~kkk~~E~s-q~~~dLk~qLe  450 (517)
                      .++..+...-+.++ .+.|.+ +...||..+|+
T Consensus       469 etv~dlEalee~~E-QL~Esn~ele~DLreEld  500 (1243)
T KOG0971|consen  469 ETVGDLEALEEMNE-QLQESNRELELDLREELD  500 (1243)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            55544433333332 233333 23346666655

>smart00504 Ubox Modified RING finger domain

Probab=98.06  E-value=2.6e-06  Score=66.48  Aligned_cols=46  Identities=11%  Similarity=-0.105  Sum_probs=40.6

Q ss_pred             ccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceEe
Q psy10797        467 EFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRL  513 (517)
Q Consensus       467 e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rI  513 (517)
                      ++.|++|.+..++     |||+||..||.+++.. ..+||.|+.  +..|+.+.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~   53 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPN   53 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeC
Confidence            4789999998888     9999999999999987 779999999  77787654

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.03  E-value=1.1e-06  Score=71.95  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=28.0

Q ss_pred             hcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        461 EFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       461 EKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      ++++ +.++|+.|.+..|+      |.|+||+.||.+.+.+   .||.|+.  -.+|++
T Consensus         2 ~~le-~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    2 ERLE-ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             HHHH-HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS--
T ss_pred             hHHH-HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHH
Confidence            3444 56899999999888      9999999999998876   4999999  568875

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.01  E-value=2.1e-06  Score=63.64  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=29.2

Q ss_pred             ccccccccccc--------cccccchhhHHHHHhhhccCCCCCC
Q psy10797        469 SAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCN  504 (517)
Q Consensus       469 kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~  504 (517)
                      .|+||.+.+.+        |||+||.+||.+|++. +++||.|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            58899987643        9999999999999976 57999995

...

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.01  E-value=0.0056  Score=59.91  Aligned_cols=61  Identities=30%  Similarity=0.414  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        304 QLEDQTHQLQKQVATHK---QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE  364 (517)
Q Consensus       304 ~lE~EieeLr~kL~s~e---qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aE  364 (517)
                      .|-.++.+|+.++.+.+   +.+.++..|++.+-.-...+.++|.+++.|-+..|..+..|+++
T Consensus        40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~  103 (193)
T PF14662_consen   40 QLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAE  103 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888877665   44567788999999999999999999998888888877777654

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.00  E-value=2.7e-06  Score=63.64  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             cccccccccc-----cccccchhhHHHHHhhhcc---CCCCC
Q psy10797        470 AKFVNFRRKS-----YFFVEFLDCLRTRYETRQR---KCPKC  503 (517)
Q Consensus       470 C~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R---KCP~C  503 (517)
                      |+||.+-+++     |||.||..||+++++....   .||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            7899998888     9999999999999988765   49988

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.00  E-value=4.1e-06  Score=59.47  Aligned_cols=37  Identities=14%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             ccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        469 SAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       469 kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .|++|.+...+      |||.||..|++.+++...++||.|+.
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~   43 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT   43 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence            47888887644      99999999999999876789999985

>smart00184 RING Ring finger

Probab=97.99  E-value=3.6e-06  Score=57.70  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=29.6

Q ss_pred             cccccccccc-----cccccchhhHHHHHhhhccCCCCC
Q psy10797        470 AKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKC  503 (517)
Q Consensus       470 C~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C  503 (517)
                      |++|.+..++     |||+||..|++.+++....+||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            6788887555     999999999999998677899998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.95  E-value=3.9e-06  Score=89.20  Aligned_cols=51  Identities=18%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             hhcccccccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      |+.++ ..+.|+||.+.+++     |||.||..||..++.. +.+||.|+.  +..++++
T Consensus        20 l~~Le-~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~   77 (397)
T TIGR00599        20 LYPLD-TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRS   77 (397)
T ss_pred             ccccc-cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCcc
Confidence            45555 77999999998888     9999999999999976 569999999  4444543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=97.91  E-value=0.0032  Score=71.68  Aligned_cols=25  Identities=12%  Similarity=0.221  Sum_probs=11.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        370 QLHKLAREEKDTLREQVQALSLQIE  394 (517)
Q Consensus       370 QKyfaamreKdaLe~Evk~Lk~Qle  394 (517)
                      +.+..+.++.+.++.++..++..+.
T Consensus       307 ~~~~~l~~~~~~l~~~~~~l~~~l~  331 (880)
T PRK03918        307 DELREIEKRLSRLEEEINGIEERIK  331 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555554444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.90  E-value=0.0069  Score=67.07  Aligned_cols=210  Identities=14%  Similarity=0.178  Sum_probs=135.5

Q ss_pred             eecchhhhHHHHHHhHhhhhcCCcccccccccHH---HHHHHHHHH-------hhhHHHHhhc-----------------
Q psy10797        241 SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLE---FRKFACVVR-------DSKRDERKKL-----------------  293 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~e---lr~rlk~l~-------e~~~k~rqkl-----------------  293 (517)
                      .+..-+.+++.++...+.|.....+++++.+.+.   ++..+..++       ....+.+..+                 
T Consensus       166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~  245 (569)
T PRK04778        166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE  245 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            4456678888888888888888888888877762   222222222       1122222211                 


Q ss_pred             ----CcHHHHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        294 ----ADEEAMRKIKQLEDQTHQ------------LQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA  357 (517)
Q Consensus       294 ----ad~Eal~rL~~lE~Eiee------------Lr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~  357 (517)
                          ...+...+|..++.++.+            .+.+++..+...+.|+.-|+.=..|.........+.-..+....+.
T Consensus       246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~  325 (569)
T PRK04778        246 GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQ  325 (569)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                122344566666655544            3444556677888888888888888888888888888899999999


Q ss_pred             HHHHHHHhhhhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        358 NFKLMTERIKSNQLH----------KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQA  427 (517)
Q Consensus       358 n~KL~aEK~KAdQKy----------faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqa  427 (517)
                      +..|..|--.-+|.|          ..+.++...++.+...+...++......+.+++....+.+++..++++...+++.
T Consensus       326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~  405 (569)
T PRK04778        326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM  405 (569)
T ss_pred             HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888884          4566666666666666665555555555556666666666777777766666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        428 MDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       428 le~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      +...++...++......++..+.
T Consensus       406 l~~Lrk~E~eAr~kL~~~~~~L~  428 (569)
T PRK04778        406 LQGLRKDELEAREKLERYRNKLH  428 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555444444444444444444

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.87  E-value=7.4e-06  Score=59.44  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=29.5

Q ss_pred             cccccccccc------cccccchhhHHHHHh-hhccCCCCC
Q psy10797        470 AKFVNFRRKS------YFFVEFLDCLRTRYE-TRQRKCPKC  503 (517)
Q Consensus       470 C~iC~~r~K~------CgHvFC~~CIq~rl~-tR~RKCP~C  503 (517)
                      |+||.+.+.+      |||.||..|+.++++ ....+||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            6788887655      999999999999999 567799998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0161|consensus

Probab=97.87  E-value=0.0051  Score=76.18  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        407 ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       407 Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      -+.|+.++.+++.++...+...+..+++..++....++|+.+|+
T Consensus      1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444443333333344555555555666666655

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.82  E-value=0.0038  Score=61.80  Aligned_cols=120  Identities=13%  Similarity=0.189  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      +||..+|.+++.....|+...+..+..-...+....+++.+...+..--..+...|..+..+..---.++++|.-+.+-.
T Consensus        43 rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl  122 (237)
T PF00261_consen   43 RRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKL  122 (237)
T ss_dssp             HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666555555566677777778888888888888888877777788888888887777778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      ..++.++......++.....|..|++.-+.+.+.+..++.
T Consensus       123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen  123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            9999998888888888888888888766555554444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG2164|consensus

Probab=97.82  E-value=9.3e-06  Score=87.98  Aligned_cols=50  Identities=10%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             ccccccccccccc-----cccccchhhHHHHHhh----hccCCCCCCC--CCCCceEeecC
Q psy10797        467 EFSAKFVNFRRKS-----YFFVEFLDCLRTRYET----RQRKCPKCNA--KANDYHRLYLG  516 (517)
Q Consensus       467 e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t----R~RKCP~C~~--~~~Dv~rIylt  516 (517)
                      .+.||||...+--     |||+||.+||=..+.+    ..++||.|+.  +..||++|++-
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e  246 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE  246 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence            7899999986533     9999999999988865    3689999999  99999999873

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.80  E-value=0.01  Score=64.11  Aligned_cols=49  Identities=20%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        382 LREQVQALSLQIEAMHTAIRKLEEKER---FLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er---~L~~kLs~lEKEL~~lkqale~  430 (517)
                      +..+++.++.+++...+.+..+++..+   .+..++..+++++...+..++.
T Consensus       304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~  355 (562)
T PHA02562        304 IKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT  355 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555444444443333322   2233444444444444444433

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=9.5e-06  Score=81.97  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             cccccccccccccc-----cccccchhhHHH-HHhhhccCCCCCCC--CCCCc
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRT-RYETRQRKCPKCNA--KANDY  510 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~-rl~tR~RKCP~C~~--~~~Dv  510 (517)
                      ..|||.+|.+.+-+     |||+||+.||-. |...+--+||.|++  ..++|
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            57999999998877     999999999999 77777778999999  66665

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.72  E-value=1.5e-05  Score=59.49  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             ccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        469 SAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       469 kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .|++|...+.+        |||+||..|++... ....+||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            47888887722        99999999999987 66789999985

>KOG0161|consensus

Probab=97.71  E-value=0.012  Score=73.04  Aligned_cols=96  Identities=18%  Similarity=0.261  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy10797        303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTL  382 (517)
Q Consensus       303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaL  382 (517)
                      ..+++.++++...+..++.+..+...+|+.++.+....++.+.++...-.+.|+++..+..+-.....+...+.+.+.-+
T Consensus       939 ~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen  939 QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444455555555555555555555555555555555555555555555554444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10797        383 REQVQALSLQIEAMHT  398 (517)
Q Consensus       383 e~Evk~Lk~QlekQ~e  398 (517)
                      +.++..+...+++.+.
T Consensus      1019 e~~l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKR 1034 (1930)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444443333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.71  E-value=0.011  Score=65.53  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797        299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH  372 (517)
Q Consensus       299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy  372 (517)
                      ......++.++++|+..|...+++.+.|..+.+.+....+.+.+.+..+..+..+...++.+|-.+..-..|+.
T Consensus       163 e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  163 EEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666666666666777777777666666666666666666666666666666655555455554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0963|consensus

Probab=97.70  E-value=0.019  Score=64.26  Aligned_cols=75  Identities=23%  Similarity=0.202  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797        318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ----LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ  392 (517)
Q Consensus       318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq----L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q  392 (517)
                      +.....+.+-.=|.+++.|-++.+.+.-.+-..    +..+-+.+.-+|.|-..|+|+.-.|.++.+.|..+....+..
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~  271 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS  271 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            445566666677788888888877776655555    566667777788999999999999999999988887776644

>KOG0250|consensus

Probab=97.70  E-value=0.012  Score=69.05  Aligned_cols=84  Identities=26%  Similarity=0.308  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN  416 (517)
Q Consensus       337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~  416 (517)
                      .++.+.-+...=+.+++.|..+..+..|---.|-....++++.+.+..++-.++.+.......|.++++.-..+..++++
T Consensus       304 i~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~  383 (1074)
T KOG0250|consen  304 IEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIAD  383 (1074)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444455555555544444444555555555554444444444444334444444433334434444


Q ss_pred             HHHH
Q psy10797        417 AEKE  420 (517)
Q Consensus       417 lEKE  420 (517)
                      ++++
T Consensus       384 ~~~~  387 (1074)
T KOG0250|consen  384 LEKQ  387 (1074)
T ss_pred             HHHH
Confidence            3333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.69  E-value=0.013  Score=69.91  Aligned_cols=47  Identities=23%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      ....+..+....+.++.++...+...+.....|+++++.-..+..++
T Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~  844 (1163)
T COG1196         798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL  844 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555555444444444444444333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.69  E-value=0.012  Score=63.75  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=14.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        370 QLHKLAREEKDTLREQVQALSLQIEA  395 (517)
Q Consensus       370 QKyfaamreKdaLe~Evk~Lk~Qlek  395 (517)
                      +.+..+....+.++.+++.+...+..
T Consensus       299 ~~~~~l~d~i~~l~~~l~~l~~~i~~  324 (562)
T PHA02562        299 DRITKIKDKLKELQHSLEKLDTAIDE  324 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555556666666655555543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.66  E-value=0.023  Score=67.77  Aligned_cols=18  Identities=17%  Similarity=0.263  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        410 LQTVLTNAEKELHLRNQA  427 (517)
Q Consensus       410 L~~kLs~lEKEL~~lkqa  427 (517)
                      +..++..++.++..++..
T Consensus       833 l~~~~~~~~~~~~~l~~~  850 (1163)
T COG1196         833 LEEEIEELEEKLDELEEE  850 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333333333333333333

>KOG0250|consensus

Probab=97.64  E-value=0.013  Score=68.81  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQI-EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN  431 (517)
Q Consensus       361 L~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql-ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~  431 (517)
                      +-.+..-+.+-+.++.++.|.++.++..++++. ......+.+.+++-..|..++..++.++..+++..+..
T Consensus       356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~  427 (1074)
T KOG0250|consen  356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV  427 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555666677777777777777777766 44444555555555556666666666555555544443

>KOG0996|consensus

Probab=97.59  E-value=0.0095  Score=70.35  Aligned_cols=177  Identities=18%  Similarity=0.213  Sum_probs=103.5

Q ss_pred             chhhhHHHHHHhHhhhhcCCccccccccc-HHHHHHHHHHHhhhHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        244 TSAFQMSFYKSRWFDFRSLSDSASNIYGS-LEFRKFACVVRDSKRDERKKL-----ADEEAMRKIKQLEDQTHQLQKQVA  317 (517)
Q Consensus       244 ~a~~~~~al~~~l~~~~~~~d~~~~i~~e-~elr~rlk~l~e~~~k~rqkl-----ad~Eal~rL~~lE~EieeLr~kL~  317 (517)
                      .+.+-++.++.+|+......+.   +..+ .+++.++.++.+....-+-++     .-.++-..++.++.+|.++++.+.
T Consensus       775 ~s~~~v~~le~~l~~~~~~~~~---~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~  851 (1293)
T KOG0996|consen  775 VSKESVEKLERALSKMSDKARQ---HQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL  851 (1293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444556666666655443222   1111 134444444444333222211     112222566777777777777766


Q ss_pred             hhHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        318 THKQEEEALL--NE-MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ-LHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       318 s~eqe~eALl--sE-IEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ-KyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      ...-+.+.|.  .| |+.+.+-++++|++..+ -+++.+..+.+-.+--|+++..+ +...+....+.++++++.++..+
T Consensus       852 k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i  930 (1293)
T KOG0996|consen  852 KKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAI  930 (1293)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5555555543  44 88888888998877777 67788888888888888877643 45556666677777777777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      ..+...|+++......+...+..+++++..+
T Consensus       931 ~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L  961 (1293)
T KOG0996|consen  931 KTSDRNIAKAQKKLSELEREIEDTEKELDDL  961 (1293)
T ss_pred             hcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666555544444444444444333

>KOG1029|consensus

Probab=97.57  E-value=0.013  Score=66.92  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      .||+.+-+-.|-|...-.+|.++|.|..+++.+|+-||.+-+-+........-.-..+...|++...+-..++++++|
T Consensus       472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikd  549 (1118)
T KOG1029|consen  472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKD  549 (1118)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777888899999999999999998887654433332222222222333444444444444444444

>PRK09039 hypothetical protein; Validated

Probab=97.55  E-value=0.011  Score=62.01  Aligned_cols=105  Identities=20%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797        310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL  389 (517)
Q Consensus       310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L  389 (517)
                      .+|+..+..++.+.+++..+-+.+..+|+...+       +..+.+.....+-.+-.-.++.|..+......|..|+..|
T Consensus        77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~-------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aL  149 (343)
T PRK09039         77 QDLQDSVANLRASLSAAEAERSRLQALLAELAG-------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAAL  149 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344444445555555444444444444443221       2223334444444444445556666677777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        390 SLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL  421 (517)
Q Consensus       390 k~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL  421 (517)
                      +.|+......|.-.++..+..+.++..++++|
T Consensus       150 r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L  181 (343)
T PRK09039        150 RRQLAALEAALDASEKRDRESQAKIADLGRRL  181 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776666666666665554

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.55  E-value=0.061  Score=59.88  Aligned_cols=48  Identities=21%  Similarity=0.301  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL  347 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk  347 (517)
                      ..++..+++.+.|+.+.+.+....+.+..|.+.+....+++......+
T Consensus       178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L  225 (546)
T PF07888_consen  178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL  225 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444445555555555444444444333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02926 zinc finger-like protein; Provisional

Probab=97.51  E-value=4.9e-05  Score=75.61  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             cccccccccccc------cc--------cccccchhhHHHHHhhh-----ccCCCCCCC
Q psy10797        466 REFSAKFVNFRR------KS--------YFFVEFLDCLRTRYETR-----QRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~------K~--------CgHvFC~~CIq~rl~tR-----~RKCP~C~~  505 (517)
                      ++..|.+|.+..      .+        |+|.||..||..|-+++     .|.||.|+.
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~  227 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRT  227 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcc
Confidence            568999999752      12        99999999999998876     356999998

>TIGR00606 rad50 rad50

Probab=97.48  E-value=0.024  Score=68.48  Aligned_cols=118  Identities=17%  Similarity=0.264  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        300 RKIKQLEDQTHQLQKQVA---------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~---------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      ..+..++.++++|..++.         .++.+.+++..+++.+....+++++...++-.++.++.+....+-.++.+...
T Consensus       799 ~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~  878 (1311)
T TIGR00606       799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT  878 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555554444333         23455555555666666666666777777777777777767667677777666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL  421 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL  421 (517)
                          ....+..++.++..+...++.+.+.|..+++.-.-+...+..++.++
T Consensus       879 ----~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1311)
T TIGR00606       879 ----NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK  925 (1311)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence                33366777777777777777777776666665444444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.48  E-value=0.072  Score=65.47  Aligned_cols=79  Identities=10%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      ..++......+++++.+.......+.+.++....+..|..++.+....+......+..++..++..+......+.+++.
T Consensus       347 q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~  425 (1486)
T PRK04863        347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER  425 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666666666666666666666666666666666666666666665555556665555555555555554444

>KOG4673|consensus

Probab=97.48  E-value=0.017  Score=65.24  Aligned_cols=91  Identities=26%  Similarity=0.276  Sum_probs=52.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        316 VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ-QLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE  394 (517)
Q Consensus       316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq-qL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle  394 (517)
                      +.++-++-+||-.||.+|-+      +...+++. .|+|+|+.+..||+|.-|-.-++-+----..-|.++.+...+.++
T Consensus       418 vqa~~kERDalr~e~kslk~------ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~  491 (961)
T KOG4673|consen  418 VQALTKERDALRREQKSLKK------ELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE  491 (961)
T ss_pred             HHHHHHhHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            33444444555555544432      22334444 789999999999999888655444433333334444455555556


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        395 AMHTAIRKLEEKERFLQT  412 (517)
Q Consensus       395 kQ~e~I~kLeE~Er~L~~  412 (517)
                      |-.+.|.+|.+.+..|..
T Consensus       492 K~ge~i~~L~sE~~~lk~  509 (961)
T KOG4673|consen  492 KKGELITKLQSEENKLKS  509 (961)
T ss_pred             HhhhHHHHHHHHHHHHHH
Confidence            666677776665444443

>KOG1029|consensus

Probab=97.45  E-value=0.021  Score=65.29  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             ccccccHHHHHHHHHHHhhhHHHHhhcC---cHHHHHHH-HHHH---HHHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q psy10797        267 SNIYGSLEFRKFACVVRDSKRDERKKLA---DEEAMRKI-KQLE---DQTHQLQKQVATH----KQEEEALLNEMEVTGQ  335 (517)
Q Consensus       267 ~~i~~e~elr~rlk~l~e~~~k~rqkla---d~Eal~rL-~~lE---~EieeLr~kL~s~----eqe~eALlsEIEsIgq  335 (517)
                      ++.+|.++|+.|-+.+++..+++|.+.+   ++|..+|= +..|   ..-.+|+++|+..    .+.++-=..||+..+.
T Consensus       321 Ny~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEa  400 (1118)
T KOG1029|consen  321 NYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREA  400 (1118)
T ss_pred             hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999988888877664   33333111 1111   1123555555532    2444555789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy10797        336 AFEDMQEQNSRLLQQLREKD  355 (517)
Q Consensus       336 AyEdmQeQNqrklqqL~EkE  355 (517)
                      |-+++..|.+--..+.+-.|
T Consensus       401 ar~ElEkqRqlewErar~qe  420 (1118)
T KOG1029|consen  401 AREELEKQRQLEWERARRQE  420 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998877665544444333

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.42  E-value=8.7e-05  Score=74.38  Aligned_cols=39  Identities=13%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             ccccccccccccc-------------ccccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRK-------------SYFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K-------------~CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .+..|++|.+...             .|+|+||.+||.+|++. +..||.|+.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~  224 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRT  224 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCC
Confidence            4578999998531             29999999999999874 679999998

>PRK03918 chromosome segregation protein; Provisional

Probab=97.40  E-value=0.093  Score=60.02  Aligned_cols=8  Identities=50%  Similarity=1.286  Sum_probs=5.7

Q ss_pred             cCCCCCCC
Q psy10797        498 RKCPKCNA  505 (517)
Q Consensus       498 RKCP~C~~  505 (517)
                      -.||+|+.
T Consensus       436 ~~Cp~c~~  443 (880)
T PRK03918        436 GKCPVCGR  443 (880)
T ss_pred             CCCCCCCC
Confidence            36777777

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.39  E-value=0.17  Score=54.86  Aligned_cols=174  Identities=17%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             HHHHHHHhhhHHHHhhcC-----cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        277 KFACVVRDSKRDERKKLA-----DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL  351 (517)
Q Consensus       277 ~rlk~l~e~~~k~rqkla-----d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL  351 (517)
                      +|++.+....++-.++..     ....+..|+++|.++..++.++.....+.+.+...|+.+.+..+.++.|-..--..|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444333331     133557778888888888888888888888888888888888877776652222223


Q ss_pred             HHHHHHHHH----------HHHHh----hhhhhhHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHH
Q psy10797        352 REKDDANFK----------LMTER----IKSNQLHKLAR----EEKDTLREQVQALSL---QIEAMHTAIR----KLEEK  406 (517)
Q Consensus       352 ~EkED~n~K----------L~aEK----~KAdQKyfaam----reKdaLe~Evk~Lk~---QlekQ~e~I~----kLeE~  406 (517)
                      ++.=+...+          +.-|-    ...-.-|.++.    +..+.+.+..+.|..   .++++.+.+.    ...+.
T Consensus       118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q  197 (420)
T COG4942         118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ  197 (420)
T ss_pred             HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222222          11111    12222222222    233333333333322   2222222222    22223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        407 ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       407 Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      .+.+...+..-.|-++.++..+...++++.|+......|+..+.
T Consensus       198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia  241 (420)
T COG4942         198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA  241 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33333344444444555666666666777777777777776655

>KOG0971|consensus

Probab=97.39  E-value=0.091  Score=61.21  Aligned_cols=181  Identities=19%  Similarity=0.225  Sum_probs=102.4

Q ss_pred             cccHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        270 YGSLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL  348 (517)
Q Consensus       270 ~~e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrkl  348 (517)
                      ..+++||.+|+.+.|++.--|.+-+ |..-+..+....-+.+.|+.--...-+....|-.||..--++-+++++--.+..
T Consensus       224 kte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k  303 (1243)
T KOG0971|consen  224 KTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYK  303 (1243)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677899999999999877665542 222222222222233322222223334445577788888888888777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q psy10797        349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ-----------------------------IEAMHTA  399 (517)
Q Consensus       349 qqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q-----------------------------lekQ~e~  399 (517)
                      ..+++.-|.+-=++.||-=|..+...+..|.+++...+..|..-                             +.+.++.
T Consensus       304 ~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda  383 (1243)
T KOG0971|consen  304 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA  383 (1243)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence            77777777776666666666666666666555555444444322                             2222222


Q ss_pred             HHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        400 IRKLEEKE---RF----LQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       400 I~kLeE~E---r~----L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      +-+|.|..   +.    +...++...-|+..++...+..++++.++....++|+.|++
T Consensus       384 lVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  384 LVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333321   11    22222223334555555555556666677777788888887

>KOG0976|consensus

Probab=97.38  E-value=0.047  Score=62.79  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=23.0

Q ss_pred             ccccchhhHHHHHhhhccCCCCCCC
Q psy10797        481 FFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       481 gHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      -|--|..|+...|.+.+-|=|+||.
T Consensus       632 e~~elvtyL~sqi~~kqtkqpklgr  656 (1265)
T KOG0976|consen  632 EHPELVTYLPSQIDAKQTKQPKLGR  656 (1265)
T ss_pred             ccHHHHhhchhhhchhcccCCccCC
Confidence            4778999999999999999999998

>KOG0996|consensus

Probab=97.37  E-value=0.05  Score=64.56  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             ccCCCCCCCCCCCCccccccchhhhhhhhhhh---------------cCccccccccccchhHHHHHHHHHHH
Q psy10797         35 IPMSPHHKMMPGTGRDMKMIESDQVRDLKSQL---------------NGQNTAKRSNHLNQTFCVASLLIAQL   92 (517)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (517)
                      +|-.|-|--++..|-- -||..=-|+..||-.               -|.|....||-..--.-|...=..++
T Consensus        68 ~pp~~~~~t~~~~~~R-L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~ki  139 (1293)
T KOG0996|consen   68 PPPRPPHMTSEAGGPR-LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKI  139 (1293)
T ss_pred             CCCCChhhcCCCCCCe-eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHH
Confidence            4444444444443332 378888899999853               46777788887665544444433333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.36  E-value=0.066  Score=65.76  Aligned_cols=180  Identities=13%  Similarity=0.109  Sum_probs=92.1

Q ss_pred             cccCcceeee--ecchhhhHHHHHHhHhhhhcCC----------------cccccccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797        232 FSLTSTLFVS--ICTSAFQMSFYKSRWFDFRSLS----------------DSASNIYGSLEFRKFACVVRDSKRDERKKL  293 (517)
Q Consensus       232 ~~l~~~~~~~--~~~a~~~~~al~~~l~~~~~~~----------------d~~~~i~~e~elr~rlk~l~e~~~k~rqkl  293 (517)
                      +.||-.--|.  +++-+..+..+..-|...+...                -++++|...++.|.-++++-    .++.+.
T Consensus       220 yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAa----g~r~rk  295 (1486)
T PRK04863        220 YLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEAL----ELRREL  295 (1486)
T ss_pred             HcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHH----HHHHHH
Confidence            3455442244  5556666666666555555422                23456777777777777762    222222


Q ss_pred             CcHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797        294 ADEEAM-------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERI  366 (517)
Q Consensus       294 ad~Eal-------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~  366 (517)
                        .++.       .++..++..+++|..+++.++++.+.+..-.+...++. ..+........++.+.++.......+..
T Consensus       296 --~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-r~q~ei~~l~~~LeELee~Lee~eeeLe  372 (1486)
T PRK04863        296 --YTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQADLEELEERLEEQNEVVE  372 (1486)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3333       44444444444555555554444444433322222211 2233334444455555555555555555


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        367 KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAE  418 (517)
Q Consensus       367 KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lE  418 (517)
                      .+.........+.+.++.+++.++.++......+..++.....++..+..++
T Consensus       373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le  424 (1486)
T PRK04863        373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE  424 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666777777766666555555555555544544444333

>TIGR00606 rad50 rad50

Probab=97.34  E-value=0.12  Score=62.56  Aligned_cols=95  Identities=5%  Similarity=-0.018  Sum_probs=45.2

Q ss_pred             eeeecchhhhHHHHHHhHhhhhcCCc----ccccccccHHHHHHHHHHHhhhHHHHhhc-------CcHHHHHHHHHHHH
Q psy10797        239 FVSICTSAFQMSFYKSRWFDFRSLSD----SASNIYGSLEFRKFACVVRDSKRDERKKL-------ADEEAMRKIKQLED  307 (517)
Q Consensus       239 ~~~~~~a~~~~~al~~~l~~~~~~~d----~~~~i~~e~elr~rlk~l~e~~~k~rqkl-------ad~Eal~rL~~lE~  307 (517)
                      .-++.+++++++.++..|+.....-+    ..+++..-..+..++..++.....-...+       .-+++...++.++.
T Consensus       757 e~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~  836 (1311)
T TIGR00606       757 NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH  836 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH
Confidence            34555666666666666655554111    11222222233333333333322221111       12445566666666


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEMEVT  333 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIEsI  333 (517)
                      +++.|+..++.+..+.+.+..+|..+
T Consensus       837 el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       837 ELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666665555555555555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0933|consensus

Probab=97.28  E-value=0.047  Score=64.00  Aligned_cols=96  Identities=16%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797        300 RKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH  372 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy  372 (517)
                      +|++.++.++..+.++++       ..+++.+.|..|.|.+.++.+....|...+..++......+-.|.+.       .
T Consensus       787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k-------v  859 (1174)
T KOG0933|consen  787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK-------V  859 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            788888888877777666       45567777777777777777777777666666666666555555433       3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTAIRK  402 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~I~k  402 (517)
                      ..+..+.+.+..++.-.++....+...|..
T Consensus       860 ~~~~~~~~~~~~el~~~k~k~~~~dt~i~~  889 (1174)
T KOG0933|consen  860 DKVEKDVKKAQAELKDQKAKQRDIDTEISG  889 (1174)
T ss_pred             HhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence            333444444444544444444444444443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.28  E-value=0.082  Score=58.77  Aligned_cols=209  Identities=18%  Similarity=0.227  Sum_probs=119.1

Q ss_pred             ecchhhhHHHHHHhHhhhhcCCcccccccccH----------------------------HHHHHHHHHHhhhHHHHhh-
Q psy10797        242 ICTSAFQMSFYKSRWFDFRSLSDSASNIYGSL----------------------------EFRKFACVVRDSKRDERKK-  292 (517)
Q Consensus       242 ~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~----------------------------elr~rlk~l~e~~~k~rqk-  292 (517)
                      +..-+.+++.++...+.|....++++++.+.+                            .+-.++.++++..++-... 
T Consensus       163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g  242 (560)
T PF06160_consen  163 IEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG  242 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC
Confidence            34556777777777777777666666666665                            2222333333333322111 


Q ss_pred             --cCcHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        293 --LADEEAMRKIKQLEDQTHQLQKQVA------------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN  358 (517)
Q Consensus       293 --lad~Eal~rL~~lE~EieeLr~kL~------------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n  358 (517)
                        +...++..+|+.++.++.++...++            ....+.+.|+.-|+.=..|.....+........+....+.+
T Consensus       243 y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~  322 (560)
T PF06160_consen  243 YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQN  322 (560)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence              1233455677777777766555554            34455555555555556677777777888888888899999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        359 FKLMTERIKSNQLHKLAREEK---DTLREQVQALSLQIEAMHTAIR-------KLEEKERFLQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       359 ~KL~aEK~KAdQKyfaamreK---daLe~Evk~Lk~QlekQ~e~I~-------kLeE~Er~L~~kLs~lEKEL~~lkqal  428 (517)
                      ..|..|--+-+|.|-..-.+.   ..++.+++.+..+.+...+.|.       .+.+.-+.+...+..++++...+...+
T Consensus       323 ~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l  402 (560)
T PF06160_consen  323 KELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL  402 (560)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888885544333   2333444444443333322222       233333444455556666655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        429 DLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       429 e~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      ...++.-.++..+...++..+.
T Consensus       403 ~~L~~dE~~Ar~~l~~~~~~l~  424 (560)
T PF06160_consen  403 QSLRKDEKEAREKLQKLKQKLR  424 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444444455555555444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.28  E-value=0.054  Score=55.94  Aligned_cols=46  Identities=17%  Similarity=0.185  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR  401 (517)
Q Consensus       356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~  401 (517)
                      +...+|..+++-+.+.+..+..+...++.++..++.++......+.
T Consensus       182 ~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~  227 (423)
T TIGR01843       182 EARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQID  227 (423)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3344555555555556655555555555555555555444443333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09039 hypothetical protein; Validated

Probab=97.27  E-value=0.065  Score=56.32  Aligned_cols=51  Identities=18%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR  352 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~  352 (517)
                      |+.++.+|.+|=..+.--......+-.+|..+..-|+.++.+..++-.++.
T Consensus        55 L~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~  105 (343)
T PRK09039         55 LDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA  105 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444455555666666666666655555554444333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.26  E-value=0.16  Score=51.36  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHH-
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ-LHKL-  374 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ-Kyfa-  374 (517)
                      +.+-+|+.+..++.+|....+....+.++..+|++.+-+++.+.+.-...+=.|++..+..+.++- +|.+-.+ +..+ 
T Consensus         7 ~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r-~r~~~~e~kl~~v   85 (239)
T COG1579           7 KSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR-ERIKRAEEKLSAV   85 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence            344667777778888888888888888888888888888888877776666666666666665553 3332222 2211 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 -AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       375 -amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~  411 (517)
                       -+++..+|..|+.+++.+.......+..+.+....++
T Consensus        86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~  123 (239)
T COG1579          86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE  123 (239)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1334445555555555544444444444444433333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.21  E-value=0.32  Score=52.45  Aligned_cols=64  Identities=20%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797        305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS  368 (517)
Q Consensus       305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA  368 (517)
                      .|.|-+..+.++.+..+|-++.-.|....-+-|-+.+....++-.|..+...++..|..++.+.
T Consensus       100 ~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql  163 (499)
T COG4372         100 AETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL  163 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334344444444444444444445555555555555555555555555555555555555444

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.18  E-value=0.00017  Score=54.66  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=18.3

Q ss_pred             cccccccccc---------cccccchhhHHHHHhhh---ccCCC
Q psy10797        470 AKFVNFRRKS---------YFFVEFLDCLRTRYETR---QRKCP  501 (517)
Q Consensus       470 C~iC~~r~K~---------CgHvFC~~CIq~rl~tR---~RKCP  501 (517)
                      |+||.+ +.+         |||+||.+|+++...+.   .-|||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            788888 433         99999999999998853   44888

>KOG0612|consensus

Probab=97.18  E-value=0.12  Score=61.80  Aligned_cols=64  Identities=27%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      +.+.++..+--+..+.+...-+....++.++..|+..+++-+..+.++++..+...+..++.|+
T Consensus       602 ~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek  665 (1317)
T KOG0612|consen  602 KENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK  665 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555556666677788888888888888888888888888866667766666666

>KOG0977|consensus

Probab=97.17  E-value=0.099  Score=58.28  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797        321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd  380 (517)
                      .+.+.+...+..++..-+.+..+|.++-.+|...-...-+-+.-|+...++-..++++.+
T Consensus       155 Ae~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~  214 (546)
T KOG0977|consen  155 AEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA  214 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333333344444444444444444444444433333333333333333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=97.16  E-value=0.18  Score=58.38  Aligned_cols=43  Identities=12%  Similarity=0.162  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM  340 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm  340 (517)
                      ....+..++.++..|+..+...+.+.+.+..+++.+.+.++.+
T Consensus       202 ~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l  244 (895)
T PRK01156        202 IKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL  244 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555555444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.15  E-value=0.17  Score=55.99  Aligned_cols=73  Identities=21%  Similarity=0.288  Sum_probs=54.6

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        358 NFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       358 n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      +..+..|--.+......+..+...+...+..|+..+++.+.-+.++++.+......+.+++-+|...+..++.
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea  355 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA  355 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence            4445555556666666777777778888888888888888888888888888777888888887777666654

Several sequences in this family are described as being myosin heavy chain-like.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.15  E-value=0.078  Score=60.67  Aligned_cols=28  Identities=18%  Similarity=0.351  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797        338 EDMQEQNSRLLQQLREKDDANFKLMTER  365 (517)
Q Consensus       338 EdmQeQNqrklqqL~EkED~n~KL~aEK  365 (517)
                      .+|.....++-.++..+||.+..|-.|.
T Consensus       548 ~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  548 RQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555554444

; GO: 0016021 integral to membrane

>KOG4674|consensus

Probab=97.14  E-value=0.18  Score=62.66  Aligned_cols=124  Identities=16%  Similarity=0.220  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhhhHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        275 FRKFACVVRDSKRDERKKLADEE--AMRKIKQLEDQTHQLQKQVATH-------KQEEEALLNEMEVTGQAFEDMQEQNS  345 (517)
Q Consensus       275 lr~rlk~l~e~~~k~rqklad~E--al~rL~~lE~EieeLr~kL~s~-------eqe~eALlsEIEsIgqAyEdmQeQNq  345 (517)
                      ++.+|+.++..+..++.....-+  ....+.++..++..++.++...       +...+.|...|+..-+--+.+.++|+
T Consensus       634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~  713 (1822)
T KOG4674|consen  634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK  713 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999988887766654222  3377778888888888887754       46778888888888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT  398 (517)
Q Consensus       346 rklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e  398 (517)
                      .+-..+...+..+..+..|-..++-+...+--+.+.|..|...++..-+....
T Consensus       714 ~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~  766 (1822)
T KOG4674|consen  714 NLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQ  766 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888888888887777777777666544333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.13  E-value=0.17  Score=57.22  Aligned_cols=132  Identities=17%  Similarity=0.223  Sum_probs=76.6

Q ss_pred             eeeeecchhhhHHHHHHhHhhhhc-----CCcccccccccHH---------HHHHHHHHHhhhHHHHhhcCcHHHH----
Q psy10797        238 LFVSICTSAFQMSFYKSRWFDFRS-----LSDSASNIYGSLE---------FRKFACVVRDSKRDERKKLADEEAM----  299 (517)
Q Consensus       238 ~~~~~~~a~~~~~al~~~l~~~~~-----~~d~~~~i~~e~e---------lr~rlk~l~e~~~k~rqklad~Eal----  299 (517)
                      |.=++.....+|..|+.+|..+..     .++......++.+         |++++..+.+.+..   ...+-+.+    
T Consensus        41 L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa---qv~~ne~Ls~L~  117 (617)
T PF15070_consen   41 LKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA---QVENNEQLSRLN  117 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            333455667888999999988875     2222233344432         33334344333222   11122222    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy10797        300 ----RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLA  375 (517)
Q Consensus       300 ----~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaa  375 (517)
                          .+|..+|..+++++...    .+...|+..|++=..+...+-+||..+-.||.|.++.--+|..|++--..+..+.
T Consensus       118 ~EqEerL~ELE~~le~~~e~~----~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E  193 (617)
T PF15070_consen  118 QEQEERLAELEEELERLQEQQ----EDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSE  193 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence                44444444444444433    3344566666666666667789999999999999999999988875443333333


Q ss_pred             H
Q psy10797        376 R  376 (517)
Q Consensus       376 m  376 (517)
                      .
T Consensus       194 q  194 (617)
T PF15070_consen  194 Q  194 (617)
T ss_pred             H
Confidence            3

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=97.13  E-value=0.1  Score=56.20  Aligned_cols=19  Identities=5%  Similarity=0.099  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHhhhHHHHhh
Q psy10797        274 EFRKFACVVRDSKRDERKK  292 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqk  292 (517)
                      ++++++.++++++.+++++
T Consensus       172 ~~~~~L~~ae~~l~~f~~~  190 (498)
T TIGR03007       172 TYEKKLEAAENRLKAFKQE  190 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4445555555555555444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.12  E-value=0.1  Score=51.30  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      +.++...|..++.+|+..+.+.......+++.-+.|...-.++..++-....-+......+.+.++..++|+.-++
T Consensus        93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie  168 (193)
T PF14662_consen   93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE  168 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3445555555555555555555555555555555555444555555533333332223344455555555555554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.11  E-value=0.12  Score=48.11  Aligned_cols=128  Identities=19%  Similarity=0.256  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLA  375 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaa  375 (517)
                      +.+..+...+++++.+|...+..++.+..+|..=+..++.-.+.++++....-..+.+.+......              
T Consensus        10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~--------------   75 (143)
T PF12718_consen   10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA--------------   75 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH--------------
Confidence            445566666777777777666666666666666666666666666555555444444444322221              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQS  441 (517)
Q Consensus       376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~  441 (517)
                          +.+...++.|...++.....+....++-+....+.+.++++...+.+..+...+++.++..+
T Consensus        76 ----E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k  137 (143)
T PF12718_consen   76 ----EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK  137 (143)
T ss_pred             ----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                14444444554445444444444444444444444555555555544444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.10  E-value=0.00018  Score=74.04  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=35.9

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..++|.||..+++-     |||.||.-||.+.+.+ |-.||.|+.
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~   67 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCRE   67 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccc
Confidence            66899999999887     9999999999999987 789999997

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.09  E-value=0.21  Score=57.32  Aligned_cols=58  Identities=19%  Similarity=0.281  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN  431 (517)
Q Consensus       374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~  431 (517)
                      +++.-+..|+.|++.|+..+....+.+..+|+.-..|+....+-+++...+-.++.+.
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am  599 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM  599 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            4555667777888888887777777777777655444432112233344444444433

; GO: 0016021 integral to membrane

>KOG0933|consensus

Probab=97.09  E-value=0.15  Score=60.12  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK  402 (517)
Q Consensus       323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k  402 (517)
                      ..-+..+++.+..-+++++.+...+..-+...++.+..+  |+...|-+...- +.+..++++++.++..++++.....+
T Consensus       736 ~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~l--E~~~~d~~~~re-~rlkdl~keik~~k~~~e~~~~~~ek  812 (1174)
T KOG0933|consen  736 FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTL--EKKMKDAKANRE-RRLKDLEKEIKTAKQRAEESSKELEK  812 (1174)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555544  443333333332 23444555666666666555554444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.07  E-value=0.16  Score=60.85  Aligned_cols=74  Identities=16%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             hhhhHHHHHHhHhhhhcCCcc----cccccccHHHHHHHHHHHhhhHHHHhh-------cCcHHHHHHHHHHHHHHHHHH
Q psy10797        245 SAFQMSFYKSRWFDFRSLSDS----ASNIYGSLEFRKFACVVRDSKRDERKK-------LADEEAMRKIKQLEDQTHQLQ  313 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~~~d~----~~~i~~e~elr~rlk~l~e~~~k~rqk-------lad~Eal~rL~~lE~EieeLr  313 (517)
                      -++.+..|++.|+-+++..+.    ..+-..-++.-++++++++.....++.       ++.+|..+++...+.++.+++
T Consensus        43 ~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q  122 (1109)
T PRK10929         43 QAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKS  122 (1109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            455566777777777663332    122222223334444444444433221       234555566666666666666


Q ss_pred             HHHHh
Q psy10797        314 KQVAT  318 (517)
Q Consensus       314 ~kL~s  318 (517)
                      ..+..
T Consensus       123 ~~l~~  127 (1109)
T PRK10929        123 RQAQQ  127 (1109)
T ss_pred             HHHHH
Confidence            66553

>KOG0999|consensus

Probab=97.06  E-value=0.18  Score=56.33  Aligned_cols=137  Identities=24%  Similarity=0.322  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhhHHHHhhc--------CcHHHH------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKL--------ADEEAM------------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT  333 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkl--------ad~Eal------------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI  333 (517)
                      .+|.++..+++++.+++...        .++|++            ++|..+|.++..+|..|...+.+.+.+.++-..+
T Consensus        61 ~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~  140 (772)
T KOG0999|consen   61 LARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDL  140 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777777777775421        244433            8888999999999999999888888887766655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHH
Q psy10797        334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQ-I--EAMHTAIRKLEEKERFL  410 (517)
Q Consensus       334 gqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Q-l--ekQ~e~I~kLeE~Er~L  410 (517)
                      +..=.....|..|+-.++.|.-.+-.+|.+       -|.-+.++.=+|.++|.+|+.. +  +-..-.|.+|+|.-..+
T Consensus       141 ~e~~~~~E~qR~rlr~elKe~KfRE~Rlls-------eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ell  213 (772)
T KOG0999|consen  141 KESNAAVEDQRRRLRDELKEYKFREARLLS-------EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELL  213 (772)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            555555555677777777777777777763       4777788888888888888643 3  44556788888876666


Q ss_pred             HHHHHHH
Q psy10797        411 QTVLTNA  417 (517)
Q Consensus       411 ~~kLs~l  417 (517)
                      ..++.++
T Consensus       214 n~q~ee~  220 (772)
T KOG0999|consen  214 NSQLEEA  220 (772)
T ss_pred             HHHHHHH
Confidence            6666554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.01  E-value=0.16  Score=57.48  Aligned_cols=19  Identities=26%  Similarity=0.562  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy10797        299 MRKIKQLEDQTHQLQKQVA  317 (517)
Q Consensus       299 l~rL~~lE~EieeLr~kL~  317 (517)
                      ..++..||..+.+|+.+++
T Consensus        49 ~~~V~eLE~sL~eLk~q~~   67 (617)
T PF15070_consen   49 ISRVQELERSLSELKNQMA   67 (617)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            3555555555555555444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.01  E-value=0.2  Score=60.41  Aligned_cols=16  Identities=19%  Similarity=0.079  Sum_probs=7.1

Q ss_pred             ccHHHHHHHHHHHhhh
Q psy10797        271 GSLEFRKFACVVRDSK  286 (517)
Q Consensus       271 ~e~elr~rlk~l~e~~  286 (517)
                      .+++|+.++..++...
T Consensus       601 ~ee~L~~~l~~~~~~l  616 (1201)
T PF12128_consen  601 SEEELRERLEQAEDQL  616 (1201)
T ss_pred             ChHHHHHHHHHHHHHH
Confidence            3444444444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.99  E-value=0.15  Score=61.44  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=12.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797        311 QLQKQVATHKQEEEALLNEMEVTGQAF  337 (517)
Q Consensus       311 eLr~kL~s~eqe~eALlsEIEsIgqAy  337 (517)
                      .++.++..++.+...+..|++.+.++.
T Consensus       682 ~~~~~l~~l~~~l~~~~~e~~~~~~~~  708 (1201)
T PF12128_consen  682 QIEEQLNELEEELKQLKQELEELLEEL  708 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=96.99  E-value=0.00043  Score=56.99  Aligned_cols=47  Identities=11%  Similarity=-0.022  Sum_probs=37.8

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+|+..-.+|     |||+|+..||+.|++.+...||.|+.  +..|+.+
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p   56 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIP   56 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE
Confidence            36899999999998     99999999999999988999999988  6666654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0994|consensus

Probab=96.99  E-value=0.38  Score=57.56  Aligned_cols=12  Identities=33%  Similarity=0.235  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHH
Q psy10797        350 QLREKDDANFKL  361 (517)
Q Consensus       350 qL~EkED~n~KL  361 (517)
                      ++.++|..+.+|
T Consensus      1620 ~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1620 QLGELETRMEEL 1631 (1758)
T ss_pred             HHHHHHHHHHHH
Confidence            334444444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.97  E-value=0.51  Score=52.56  Aligned_cols=94  Identities=17%  Similarity=0.160  Sum_probs=48.6

Q ss_pred             HHHHHHhHhhhhc--CCcccccccccHHHHHHHHHHHhhhHHHHhhcC--cH-HHHHHHHHHHHHHHHHHHHHHhhH---
Q psy10797        249 MSFYKSRWFDFRS--LSDSASNIYGSLEFRKFACVVRDSKRDERKKLA--DE-EAMRKIKQLEDQTHQLQKQVATHK---  320 (517)
Q Consensus       249 ~~al~~~l~~~~~--~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkla--d~-Eal~rL~~lE~EieeLr~kL~s~e---  320 (517)
                      +++|+..-..+++  .+.+.++=.+...++++|..++....++..-+.  |. +|..-+..++.++..|+..++..-   
T Consensus       142 v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~  221 (569)
T PRK04778        142 VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELL  221 (569)
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444  333333333444777777777777777655542  32 245556666666666666665332   


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHH
Q psy10797        321 QEEEA-LLNEMEVTGQAFEDMQE  342 (517)
Q Consensus       321 qe~eA-LlsEIEsIgqAyEdmQe  342 (517)
                      .+... +=..++.+...|++|.+
T Consensus       222 ~~~~~~~P~ql~el~~gy~~m~~  244 (569)
T PRK04778        222 KELQTELPDQLQELKAGYRELVE  244 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHH
Confidence            12211 22344555566665554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.97  E-value=0.18  Score=57.88  Aligned_cols=115  Identities=25%  Similarity=0.370  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE  377 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr  377 (517)
                      ...+|..++.++..+|..+.....+.+-|......+.++.+.+..+..++-.++.|.-.+-.+|+       |-|.-+.+
T Consensus        32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll-------~dyselEe  104 (717)
T PF09730_consen   32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLL-------QDYSELEE  104 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH
Confidence            34899999999999999999999999999999999999999999999999999998888888886       56888888


Q ss_pred             HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        378 EKDTLREQVQALSLQ-I--EAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       378 eKdaLe~Evk~Lk~Q-l--ekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      |.=+|.++|..|+.. +  +-.+-.|.+|+|.-..|.+++.++.+
T Consensus       105 ENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen  105 ENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888743 3  56666788888887778877776544

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0982|consensus

Probab=96.96  E-value=0.16  Score=55.17  Aligned_cols=213  Identities=17%  Similarity=0.166  Sum_probs=135.1

Q ss_pred             cccccccceeccccceeeccc-Ccceeeee-----cchhhhHHHHHHhHhhhhcCCcccccccccH-----HHHHHHHHH
Q psy10797        214 SIFRFSSSTIFVYHCFDIFSL-TSTLFVSI-----CTSAFQMSFYKSRWFDFRSLSDSASNIYGSL-----EFRKFACVV  282 (517)
Q Consensus       214 ~~~~~~~~~~~~~~c~~i~~l-~~~~~~~~-----~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~-----elr~rlk~l  282 (517)
                      ++.+++.+-+|-.+.++---+ +-.++|+.     -+-..|+.+|+.....+..-.+++-|-.+..     .|..|+-.+
T Consensus       183 ptkriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~L  262 (502)
T KOG0982|consen  183 PTKRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHML  262 (502)
T ss_pred             hhhhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHH
Confidence            445555444444444332211 12233333     3456899999998888877555555555443     677777777


Q ss_pred             HhhhHHHHhhcCcHHHH------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        283 RDSKRDERKKLADEEAM------------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ  350 (517)
Q Consensus       283 ~e~~~k~rqklad~Eal------------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq  350 (517)
                      +|..++.  .+.++|.+            .+-+.+.-+++.|+.++..++.++..|-+++..+-.-.+++.+--+|..++
T Consensus       263 EEq~req--ElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~  340 (502)
T KOG0982|consen  263 EEQRREQ--ELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDL  340 (502)
T ss_pred             HHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            7665542  22222221            122233445578888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy10797        351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF-LQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~-L~~kLs~lEKEL~~lkqal  428 (517)
                      |-..-+...-.+-++....++.....++|.+.+.=+-.|..+++.....+.-++-.-+. -..++..++.+++.++|..
T Consensus       341 LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~n  419 (502)
T KOG0982|consen  341 LEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPN  419 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhcccc
Confidence            88888888888888888888888888888887776666666655544433332210000 1124445555555554443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.95  E-value=0.7  Score=49.97  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ---EQNSRLLQQL  351 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ---eQNqrklqqL  351 (517)
                      +++.++.+.++-.+|+..|+.+-++..-|..+.+++...-+.+|   +|...-+.+|
T Consensus       135 AqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L  191 (499)
T COG4372         135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL  191 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666667777777666666666666666665555555   4444434333

>KOG0980|consensus

Probab=96.93  E-value=0.45  Score=55.57  Aligned_cols=95  Identities=22%  Similarity=0.225  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK  406 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~  406 (517)
                      +.|++..-.||+.--+....|+.++....-....=-.+..|   ....+...++.++.++.+|+.++++.+..-.+++-+
T Consensus       412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~k---Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K  488 (980)
T KOG0980|consen  412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQK---QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK  488 (980)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66777776666654444444444443322221111112211   122344456666667677766666555444443333


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        407 ERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       407 Er~L~~kLs~lEKEL~~l  424 (517)
                      -+.....++.++.|+..+
T Consensus       489 ~e~~~~~le~l~~El~~l  506 (980)
T KOG0980|consen  489 TESQAKALESLRQELALL  506 (980)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            333333444444444433

>KOG4360|consensus

Probab=96.92  E-value=0.049  Score=60.04  Aligned_cols=125  Identities=25%  Similarity=0.292  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797        300 RKIKQLEDQTHQLQKQVATH-----------KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS  368 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~-----------eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA  368 (517)
                      .+|..+++|+..||.+..-+           .+-+..+.+|+..+-.+...+++..++|..++.-.-+.|.||+++-+-+
T Consensus       166 ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~  245 (596)
T KOG4360|consen  166 EKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDL  245 (596)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67788888888888876532           2334566789999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      +.|...+.-+|+.+..-++..+..-+........++|+....-..+...|.+|+-+
T Consensus       246 qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  246 QKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998888888775444433333333344445555555555666666666544

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.92  E-value=0.78  Score=53.70  Aligned_cols=9  Identities=44%  Similarity=1.173  Sum_probs=6.1

Q ss_pred             ccCCCCCCC
Q psy10797        497 QRKCPKCNA  505 (517)
Q Consensus       497 ~RKCP~C~~  505 (517)
                      ..+||.||.
T Consensus       457 ~~~CPvCg~  465 (908)
T COG0419         457 GEKCPVCGQ  465 (908)
T ss_pred             CCCCCCCCC
Confidence            457777775

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.89  E-value=0.3  Score=54.41  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHhhhHHHHhhcC---cHHHHHHHHHHHHHHH---------------------HHHHHHHhhHHHHHHHHH
Q psy10797        273 LEFRKFACVVRDSKRDERKKLA---DEEAMRKIKQLEDQTH---------------------QLQKQVATHKQEEEALLN  328 (517)
Q Consensus       273 ~elr~rlk~l~e~~~k~rqkla---d~Eal~rL~~lE~Eie---------------------eLr~kL~s~eqe~eALls  328 (517)
                      .++..++..+++........+.   -+++...+..+..+|+                     .+...+...++.+..|..
T Consensus       248 ~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~  327 (560)
T PF06160_consen  248 LDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE  327 (560)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3667777777777766655542   3334444544444443                     333334467789999999


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        329 EMEVTGQAFED---MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       329 EIEsIgqAyEd---mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      |++.+.+.|.=   --+....+-.++...+.....+...-....+.|..+....+.+..++..+..+...-.+.+..|.+
T Consensus       328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~  407 (560)
T PF06160_consen  328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK  407 (560)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999942   112234444567777777777766666667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        406 KERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       406 ~Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      .|+.-+.+|..+...+...+..++.
T Consensus       408 dE~~Ar~~l~~~~~~l~~ikR~lek  432 (560)
T PF06160_consen  408 DEKEAREKLQKLKQKLREIKRRLEK  432 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888888888777666654

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.88  E-value=0.61  Score=54.55  Aligned_cols=8  Identities=0%  Similarity=-0.247  Sum_probs=6.5

Q ss_pred             cccccccc
Q psy10797        468 FSAKFVNF  475 (517)
Q Consensus       468 ~kC~iC~~  475 (517)
                      =+||+|+.
T Consensus       458 ~~CPvCg~  465 (908)
T COG0419         458 EKCPVCGQ  465 (908)
T ss_pred             CCCCCCCC
Confidence            47999993

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.87  E-value=0.96  Score=49.27  Aligned_cols=75  Identities=9%  Similarity=0.069  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL  449 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL  449 (517)
                      +...+..++.|-..+......|.+...++.-.-..-++.+..++.++...++.++.++.+..++.+....+..+.
T Consensus       173 l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a  247 (420)
T COG4942         173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA  247 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334444555555555544444444443333222122222234444444444444444444444444444444333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.84  E-value=0.35  Score=50.37  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        408 RFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       408 r~L~~kLs~lEKEL~~lkqale~  430 (517)
                      +.+-.++..+++++...+++++.
T Consensus       134 ~~lvq~I~~L~k~le~~~k~~e~  156 (294)
T COG1340         134 RELVQKIKELRKELEDAKKALEE  156 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555544443

>KOG0980|consensus

Probab=96.81  E-value=0.54  Score=54.94  Aligned_cols=68  Identities=22%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      +.-.++-+++.++|..|-.++.+.++.       .-.+.-|+....+..+.++.|+..+..+++.++..+..+.+
T Consensus       455 e~~~~s~~~~~~~~~~L~d~le~~~~~-------~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q  522 (980)
T KOG0980|consen  455 ESAEQSIDDVEEENTNLNDQLEELQRA-------AGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ  522 (980)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            333444444444444444444433332       22333344444444444444444444444444443333333

>PRK11281 hypothetical protein; Provisional

Probab=96.81  E-value=0.27  Score=59.13  Aligned_cols=96  Identities=8%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             hHHHHHHhHhhhhcCCcc----cccccccHHHHHHHHHHHhhhHHHHhhcCcH----HHHHHHHHHHHHHHHHHHHHHhh
Q psy10797        248 QMSFYKSRWFDFRSLSDS----ASNIYGSLEFRKFACVVRDSKRDERKKLADE----EAMRKIKQLEDQTHQLQKQVATH  319 (517)
Q Consensus       248 ~~~al~~~l~~~~~~~d~----~~~i~~e~elr~rlk~l~e~~~k~rqklad~----Eal~rL~~lE~EieeLr~kL~s~  319 (517)
                      -+..|++.|+-+++..+.    ...-..-+++.++++++.+...+.++...++    ....-+.++|..+.+++..+...
T Consensus        61 ~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~  140 (1113)
T PRK11281         61 VQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNA  140 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence            478888888888873333    2233334477777888877777655532211    01122244666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        320 KQEEEALLNEMEVTGQAFEDMQEQ  343 (517)
Q Consensus       320 eqe~eALlsEIEsIgqAyEdmQeQ  343 (517)
                      +++...+++.+-+.....|..|++
T Consensus       141 Q~~La~~NsqLi~~qT~PERAQ~~  164 (1113)
T PRK11281        141 QNDLAEYNSQLVSLQTQPERAQAA  164 (1113)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHH
Confidence            666666666666555555555544

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.81  E-value=0.32  Score=44.36  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      .++..++.++..++...+..+.....+..+++...+.+.+++..-.+-|..-++-=.              ....++.+.
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~--------------~L~~lr~e~   68 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIK--------------ELQQLREEL   68 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHH
Confidence            467788889999999999999999999999999999999988776665554333222              222334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIR  401 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~  401 (517)
                      ..+..++..|+..++.....+.
T Consensus        69 ~~~~~~~~~l~~~~~~a~~~l~   90 (132)
T PF07926_consen   69 QELQQEINELKAEAESAKAELE   90 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.80  E-value=0.59  Score=45.82  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      -+|..+..++.+|+.+++.+..|+..|-.==-.-.+|.......+..+=+-+..+.+.+--|-..--++...+.++-+..
T Consensus        12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl   91 (194)
T PF15619_consen   12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL   91 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666666655555555543333333333333333333333333444444444333333344444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIE  394 (517)
Q Consensus       380 daLe~Evk~Lk~Qle  394 (517)
                      -..+.++..++.++.
T Consensus        92 k~~~~el~k~~~~l~  106 (194)
T PF15619_consen   92 KDKDEELLKTKDELK  106 (194)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444433333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.80  E-value=0.72  Score=46.73  Aligned_cols=16  Identities=25%  Similarity=0.295  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10797        413 VLTNAEKELHLRNQAM  428 (517)
Q Consensus       413 kLs~lEKEL~~lkqal  428 (517)
                      .+..++.++..++..+
T Consensus       263 ~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  263 EIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhhccchhHHHHHHHH
Confidence            3334444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.79  E-value=0.26  Score=56.11  Aligned_cols=58  Identities=9%  Similarity=0.128  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhhHHHHhhcC--cHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLA--DEE----AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEME  331 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkla--d~E----al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIE  331 (517)
                      ++++++.+++.+...++++..  +++    ..++|..++.++...+.+....+...+.+...+.
T Consensus       205 ~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~  268 (754)
T TIGR01005       205 DLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ  268 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888888888888752  222    2277888888888888777777777776666554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0964|consensus

Probab=96.78  E-value=0.27  Score=57.90  Aligned_cols=176  Identities=17%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhhhHHHHhhc-CcHHHHHHHHHHHHHHHHHHH--HHH---------hhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKL-ADEEAMRKIKQLEDQTHQLQK--QVA---------THKQEEEALLNEMEVTGQAFEDMQ  341 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkl-ad~Eal~rL~~lE~EieeLr~--kL~---------s~eqe~eALlsEIEsIgqAyEdmQ  341 (517)
                      ..+.-++-++|-..+..+.- .=.....||..+|+|.++|+.  +++         --.++..-.++||+.++.++...-
T Consensus       171 rreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~  250 (1200)
T KOG0964|consen  171 RREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAP  250 (1200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            34444555555555433321 112344788888888887764  222         234777778889999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        342 EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS-------LQIEAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       342 eQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk-------~QlekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      +.+.+...++...+|...++-.|.-+-..+...+..+|+.+.++-...-       -++...++.|..-++........+
T Consensus       251 e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l  330 (1200)
T KOG0964|consen  251 EESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL  330 (1200)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH
Confidence            8888888888888888888887777777778787777777776632222       222233333333333333333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        415 TNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL  449 (517)
Q Consensus       415 s~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL  449 (517)
                      ..++.++...++.++..+.+..++..+.+.++.+|
T Consensus       331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl  365 (1200)
T KOG0964|consen  331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRL  365 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence            44444444444444444333333333333344433

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.76  E-value=0.00073  Score=55.93  Aligned_cols=24  Identities=17%  Similarity=0.546  Sum_probs=21.1

Q ss_pred             cccccchhhHHHHHhhhccCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQRKCPKCN  504 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~RKCP~C~  504 (517)
                      |||.|-..||.+|+++ ++.||.|+
T Consensus        50 C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   50 CGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             TSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             cCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            9999999999999975 56999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4674|consensus

Probab=96.73  E-value=0.53  Score=58.72  Aligned_cols=122  Identities=18%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy10797        328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK-  406 (517)
Q Consensus       328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~-  406 (517)
                      +||+.+..--+++..|+...-..+.+.+.+....+++-+-..=++..+-.+|+.+..++.-|...+.+-++....+.-. 
T Consensus       136 ~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~  215 (1822)
T KOG4674|consen  136 AELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREH  215 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence            3555555555666666666667777777777777777777777788888888888888888888877766665554443 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        407 ---ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL  449 (517)
Q Consensus       407 ---Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL  449 (517)
                         .-.+..+|.++..++..++..+..++++..+++....++...+
T Consensus       216 s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~l  261 (1822)
T KOG4674|consen  216 SIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLEL  261 (1822)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3446667777777777666666666666666666554444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.70  E-value=0.84  Score=46.25  Aligned_cols=16  Identities=13%  Similarity=0.034  Sum_probs=8.4

Q ss_pred             hhhHHHHHHhHhhhhc
Q psy10797        246 AFQMSFYKSRWFDFRS  261 (517)
Q Consensus       246 ~~~~~al~~~l~~~~~  261 (517)
                      +++-..|+..|..+.+
T Consensus        24 E~~N~~Le~~i~~~~~   39 (312)
T PF00038_consen   24 EQENKRLESEIEELRE   39 (312)
T ss_dssp             HHHHHHHHHHHHH---
T ss_pred             HHHhhhhHHHHHHHHh
Confidence            4555567777777776

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11281 hypothetical protein; Provisional

Probab=96.70  E-value=0.31  Score=58.58  Aligned_cols=15  Identities=20%  Similarity=0.144  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHH
Q psy10797        379 KDTLREQVQALSLQI  393 (517)
Q Consensus       379 KdaLe~Evk~Lk~Ql  393 (517)
                      +..++.|...++.++
T Consensus       194 ~~~l~ae~~~l~~~~  208 (1113)
T PRK11281        194 RVLLQAEQALLNAQN  208 (1113)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444544444444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.66  E-value=1  Score=46.60  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRK  402 (517)
Q Consensus       368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~k  402 (517)
                      +.+.+..+..+....+.++..++.+++.....+..
T Consensus       201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  235 (423)
T TIGR01843       201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQ  235 (423)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666666666666665555444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.66  E-value=0.9  Score=50.34  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=72.4

Q ss_pred             eecchhhhHHHHHHhHhhhhcC-CcccccccccHHHHHHHHHHHhhhHHHH--hhcCcHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        241 SICTSAFQMSFYKSRWFDFRSL-SDSASNIYGSLEFRKFACVVRDSKRDER--KKLADEEAMRKIKQLEDQTHQLQKQVA  317 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~~~~-~d~~~~i~~e~elr~rlk~l~e~~~k~r--qklad~Eal~rL~~lE~EieeLr~kL~  317 (517)
                      ++..++..+..|+..+...+.. .+......-...|+.+++...+..-...  .+-...+....+.....++++.+..|.
T Consensus       219 ~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~  298 (522)
T PF05701_consen  219 ELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELE  298 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3556777777777777544441 1111112233355666666555222211  111123333557777777777777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy10797        318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL  374 (517)
Q Consensus       318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa  374 (517)
                      ..+.+...|...++++..-.+....-..++-+.....+..+..|-.|..+..+...+
T Consensus       299 ~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea  355 (522)
T PF05701_consen  299 KAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA  355 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence            666666666666666666555555555555555555555555555555555555443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4673|consensus

Probab=96.65  E-value=0.81  Score=52.46  Aligned_cols=100  Identities=13%  Similarity=0.115  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD---DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA  395 (517)
Q Consensus       319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE---D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek  395 (517)
                      +.+-..+|++|=|.+++--=.-..+..++-.+..+-|   +++-+++.+---..|+.....+.|+..+..   ++..+++
T Consensus       451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~---~~E~I~k  527 (961)
T KOG4673|consen  451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKL---LQETIEK  527 (961)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHH
Confidence            3444555666666555533222233333334444433   222233333333445555566666666653   3333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        396 MHTAIRKLEEKERFLQTVLTNAEKEL  421 (517)
Q Consensus       396 Q~e~I~kLeE~Er~L~~kLs~lEKEL  421 (517)
                      .+..+.+.++.-..++...+.+|.++
T Consensus       528 ~~ae~~rq~~~~~~sr~~~~~le~~~  553 (961)
T KOG4673|consen  528 HQAELTRQKDYYSNSRALAAALEAQA  553 (961)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44444444443333444444444433

>KOG0976|consensus

Probab=96.63  E-value=0.5  Score=54.84  Aligned_cols=86  Identities=8%  Similarity=0.089  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhhhHHHHhhcC--cHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        275 FRKFACVVRDSKRDERKKLA--DEEAMR---KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ  349 (517)
Q Consensus       275 lr~rlk~l~e~~~k~rqkla--d~Eal~---rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq  349 (517)
                      .+.+|++++..+.+..+.++  +.|...   .|...-.++-+++.++..+-++...++.-++...+-|++..-.|-++++
T Consensus       139 ~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sl  218 (1265)
T KOG0976|consen  139 NEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSL  218 (1265)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            34456666666665555553  344443   3333345566777777777777777777788888888887777777776


Q ss_pred             HHHHHHHHHHH
Q psy10797        350 QLREKDDANFK  360 (517)
Q Consensus       350 qL~EkED~n~K  360 (517)
                      .+.+-+..-.+
T Consensus       219 e~~~~q~~tq~  229 (1265)
T KOG0976|consen  219 ELHKDQENTQK  229 (1265)
T ss_pred             HHHHHHHHHHH
Confidence            65544443333

>KOG2177|consensus

Probab=96.61  E-value=0.00074  Score=63.04  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCN  504 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~  504 (517)
                      .++.|+||.+.+++     |||.||..|+...+. ..-.||.|+
T Consensus        12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr   54 (386)
T KOG2177|consen   12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCR   54 (386)
T ss_pred             ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccC
Confidence            67899999998877     999999999999987 567999999

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.60  E-value=0.98  Score=50.99  Aligned_cols=10  Identities=0%  Similarity=-0.313  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q psy10797        274 EFRKFACVVR  283 (517)
Q Consensus       274 elr~rlk~l~  283 (517)
                      +++.+++++.
T Consensus       213 ~le~el~~l~  222 (650)
T TIGR03185       213 ALEAELKEQS  222 (650)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=96.59  E-value=0.23  Score=57.20  Aligned_cols=136  Identities=20%  Similarity=0.263  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhhhHHHHhhc---CcHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKL---ADEEAMRKIK-------QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ  343 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkl---ad~Eal~rL~-------~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQ  343 (517)
                      .||.||+-++..++...+.-   ...|..-.|.       .|+.++.+..+.++.++..++-|+..||..-       +.
T Consensus       398 qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~-------~E  470 (861)
T PF15254_consen  398 QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK-------EE  470 (861)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH-------HH
Confidence            89999999999887633221   1123222222       3444444554445545444444555444433       33


Q ss_pred             HHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        344 NSRLLQQLREKDD-----------ANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT  412 (517)
Q Consensus       344 NqrklqqL~EkED-----------~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~  412 (517)
                      |+++...+.|+|+           ...|+-.|--.|-.+...+.-..++.+.|++.|...+.--.+.|.+|.|.-|.|+.
T Consensus       471 nk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~  550 (861)
T PF15254_consen  471 NKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN  550 (861)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444433           33334444444555666666677888889898888888778899999999999886


Q ss_pred             HHHH
Q psy10797        413 VLTN  416 (517)
Q Consensus       413 kLs~  416 (517)
                      ..+.
T Consensus       551 Sma~  554 (861)
T PF15254_consen  551 SMAK  554 (861)
T ss_pred             HHHH
Confidence            4433

>KOG0018|consensus

Probab=96.56  E-value=0.43  Score=56.67  Aligned_cols=103  Identities=18%  Similarity=0.201  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ----QLREKDDANFKLMTERIKSNQLHKLA  375 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq----qL~EkED~n~KL~aEK~KAdQKyfaa  375 (517)
                      .|+...+..++..+..+..+.++.+.+-.||..++.+.+.+...-++.-+    .+.-.|+.+..---.+-+|.-   .+
T Consensus       303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~---~~  379 (1141)
T KOG0018|consen  303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACK---EA  379 (1141)
T ss_pred             hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhh---hh
Confidence            56667777777777777777788888888888888777665544444333    566666666443322222221   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        376 REEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      .++.+.++.+.+.-+..++.-......+++
T Consensus       380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~  409 (1141)
T KOG0018|consen  380 LEELEVLNRNMRSDQDTLDHELERRAELEA  409 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            566666666666655555543333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.55  E-value=1.8  Score=50.53  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy10797        307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQV  386 (517)
Q Consensus       307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Ev  386 (517)
                      .-++.|+..+.++++..+.|.+|++.+..-++.-..+..++=.++....+....+..|-.+..-.+...-++...|...+
T Consensus       322 ~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki  401 (775)
T PF10174_consen  322 QHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI  401 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666788888888888888888888888888888888877777777777766665555555555444444444


Q ss_pred             HHHHHHH
Q psy10797        387 QALSLQI  393 (517)
Q Consensus       387 k~Lk~Ql  393 (517)
                      -+|..++
T Consensus       402 e~Lee~l  408 (775)
T PF10174_consen  402 ENLEEQL  408 (775)
T ss_pred             HHHHHHH
Confidence            4444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0311|consensus

Probab=96.54  E-value=0.00043  Score=72.67  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|++|.+-.|.      |+|.||.+||...+..-...||+|++
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk   87 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRK   87 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHh
Confidence            67899999997766      99999999999999998999999998

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.53  E-value=0.26  Score=56.06  Aligned_cols=48  Identities=10%  Similarity=-0.075  Sum_probs=25.8

Q ss_pred             eecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHH
Q psy10797        241 SICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDE  289 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~  289 (517)
                      .+.+.+.++.+.|..|..|+...+... ..++.-..+++.+++.++...
T Consensus       202 ql~~l~~~l~~aE~~l~~fk~~~~l~~-~~~~~~~~~~L~~l~~ql~~a  249 (754)
T TIGR01005       202 EIADLSKQSRDAEAEVAAYRAQSDLLM-GNNATLATQQLAELNTELSRA  249 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcc-cCCccchHHHHHHHHHHHHHH
Confidence            345555666666677777776322222 133333346676666665543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.52  E-value=0.42  Score=51.53  Aligned_cols=107  Identities=11%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             eeeecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        239 FVSICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVA  317 (517)
Q Consensus       239 ~~~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~  317 (517)
                      .=.+..++.++++.+..|..|+. +...  +-.+...+..++..+++.+..         +..++..+++.++.|+.++.
T Consensus       167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~~~~~~~~l~~l~~~l~~---------~~~~l~~~~a~~~~l~~~l~  235 (498)
T TIGR03007       167 DEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQEGDYYSEISEAQEELEA---------ARLELNEAIAQRDALKRQLG  235 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccc--CccchhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhc
Confidence            34566677777777777777765 2211  112233455556666555533         22333344444444444332


Q ss_pred             ---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        318 ---------------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD  356 (517)
Q Consensus       318 ---------------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED  356 (517)
                                     ....+...+..|+..+..-|.+-.-....+-.++.+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~  289 (498)
T TIGR03007       236 GEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEE  289 (498)
T ss_pred             cCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence                           233344445555555555555444444444444443333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0999|consensus

Probab=96.48  E-value=0.86  Score=51.19  Aligned_cols=145  Identities=18%  Similarity=0.222  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhhhHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy10797        273 LEFRKFACVVRDSKRDERKK-LADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR-----  346 (517)
Q Consensus       273 ~elr~rlk~l~e~~~k~rqk-lad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr-----  346 (517)
                      +.+|+.|+.+.+.+.+-... .-.  +..=+ .+-+|.++|+++++.++.+++..-.||+.+.+||-+.+++.++     
T Consensus        11 e~lr~eierLT~el~q~t~e~~qa--AeyGL-~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g   87 (772)
T KOG0999|consen   11 EKLRQEIERLTEELEQTTEEKIQA--AEYGL-ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDG   87 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            35677777777666542111 000  11112 2335667999999999999999999999999999999888765     


Q ss_pred             ------HHHHHHHHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy10797        347 ------LLQQLREKDDA----NFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH-------TAIRKLEEKERF  409 (517)
Q Consensus       347 ------klqqL~EkED~----n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~-------e~I~kLeE~Er~  409 (517)
                            ++++-+.+|.+    +.+|-.|--+..|-.-....+.+.++..++.+........       ..|...+..|..
T Consensus        88 ~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R  167 (772)
T KOG0999|consen   88 EEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR  167 (772)
T ss_pred             hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence                  45555555543    3445555555556666666666666666666554332222       223333444444


Q ss_pred             HHHHHHHHHHH
Q psy10797        410 LQTVLTNAEKE  420 (517)
Q Consensus       410 L~~kLs~lEKE  420 (517)
                      |.+.-+.+|.+
T Consensus       168 llseYSELEEE  178 (772)
T KOG0999|consen  168 LLSEYSELEEE  178 (772)
T ss_pred             HHHHHHHHHHh
Confidence            44444555444

>PRK01156 chromosome segregation protein; Provisional

Probab=96.44  E-value=2  Score=49.92  Aligned_cols=14  Identities=29%  Similarity=0.548  Sum_probs=8.4

Q ss_pred             hcCccccccccccc
Q psy10797         66 LNGQNTAKRSNHLN   79 (517)
Q Consensus        66 ~~~~~~~~~~~~~~   79 (517)
                      +-|.|.+..|+-+.
T Consensus        28 I~G~NGsGKSsile   41 (895)
T PRK01156         28 ITGKNGAGKSSIVD   41 (895)
T ss_pred             EECCCCCCHHHHHH
Confidence            45666666666553

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=96.43  E-value=1.3  Score=48.92  Aligned_cols=102  Identities=12%  Similarity=0.182  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHH
Q psy10797        305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF----KLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~----KL~aEK~KAdQKyfaamreKd  380 (517)
                      .+.+.+.++.++....++...+..++..+...++..++.+..++..+.+.+++..    .|..+-...+.+.|. ...++
T Consensus        58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~  136 (475)
T PRK10361         58 WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVD-EQNRQ  136 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            3334444444444444444444444444555555544444444444444333332    122233333333333 33445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQIEAMHTAIRKLEEKE  407 (517)
Q Consensus       381 aLe~Evk~Lk~QlekQ~e~I~kLeE~E  407 (517)
                      .|+.-++-++.+++.-.+.|..++..+
T Consensus       137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~~  163 (475)
T PRK10361        137 SLNSLLSPLREQLDGFRRQVQDSFGKE  163 (475)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            555556666666666666666555443

>KOG0963|consensus

Probab=96.42  E-value=0.88  Score=51.48  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        410 LQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       410 L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      ...+++.+|++++.....++..++++..- ...+++|.+|.
T Consensus       315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELs  354 (629)
T KOG0963|consen  315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELS  354 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHH
Confidence            33455666666666666665555444332 22344444444

>KOG0995|consensus

Probab=96.36  E-value=2.5  Score=47.62  Aligned_cols=76  Identities=25%  Similarity=0.307  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKD---DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkE---D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      ..++..+.+.+||+.-+.-.+.++.+|..|-.++.-..   +.+-++..|+.|-++-...+..++|.+.+++-.++.++
T Consensus       291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~  369 (581)
T KOG0995|consen  291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI  369 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33444555555555555555555555555544444321   22344556666666666666666666666665555543

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.32  E-value=0.55  Score=54.17  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        272 SLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL  351 (517)
Q Consensus       272 e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL  351 (517)
                      |+.+..||.+++...+.-|+.         +....+|.++|......+.++.+.+-.|...+-...+++...-.|+++|+
T Consensus        29 E~~~~~~i~~l~~elk~~~~~---------~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy   99 (717)
T PF09730_consen   29 EAYLQQRILELENELKQLRQE---------LSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY   99 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456666666666666554333         33444567777777777778888888888888888889999999999999


Q ss_pred             HHHHHHHHHHH--HHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q psy10797        352 REKDDANFKLM--TERIKSNQLHKLARE-EKDTLREQVQALSLQIE  394 (517)
Q Consensus       352 ~EkED~n~KL~--aEK~KAdQKyfaamr-eKdaLe~Evk~Lk~Qle  394 (517)
                      +|+|+.|+-|.  .--.|..|.=|-.++ |...++.|+..|+.|++
T Consensus       100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle  145 (717)
T PF09730_consen  100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE  145 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998773  345666666554333 66666666666666543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=96.32  E-value=0.0021  Score=66.79  Aligned_cols=35  Identities=14%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             ccccccchhhHHHHHhhhccCCCCCCC--CCCCceEe
Q psy10797        479 SYFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRL  513 (517)
Q Consensus       479 ~CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rI  513 (517)
                      .|||.||..||+.-+......||.|+.  ..++++..
T Consensus        25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q   61 (309)
T TIGR00570        25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ   61 (309)
T ss_pred             CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence            399999999999987666679999999  66565544

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0977|consensus

Probab=96.30  E-value=1.2  Score=49.99  Aligned_cols=41  Identities=15%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy10797        372 HKLAREEKDTLREQVQALSLQIEA---MHTAIRKLEEKERFLQT  412 (517)
Q Consensus       372 yfaamreKdaLe~Evk~Lk~Qlek---Q~e~I~kLeE~Er~L~~  412 (517)
                      +..+.+....++.+++.|++++..   +-..+.+..|.|..++.
T Consensus       157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~  200 (546)
T KOG0977|consen  157 INTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV  200 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555433   33344445556655553

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.30  E-value=1.4  Score=53.12  Aligned_cols=11  Identities=0%  Similarity=-0.142  Sum_probs=6.3

Q ss_pred             HHHHhHhhhhc
Q psy10797        251 FYKSRWFDFRS  261 (517)
Q Consensus       251 al~~~l~~~~~  261 (517)
                      .++.+|+.+.+
T Consensus        27 ~iq~~l~~~~~   37 (1109)
T PRK10929         27 QITQELEQAKA   37 (1109)
T ss_pred             HHHHHHHHhhc
Confidence            45566666555

>KOG0612|consensus

Probab=96.30  E-value=0.86  Score=54.91  Aligned_cols=26  Identities=35%  Similarity=0.408  Sum_probs=14.1

Q ss_pred             cccCCCCCCCCCCCCccccccchhhhh
Q psy10797         34 LIPMSPHHKMMPGTGRDMKMIESDQVR   60 (517)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (517)
                      ||-++.|-|. ...|.=|||-....||
T Consensus       207 Lld~~GHikL-ADFGsClkm~~dG~V~  232 (1317)
T KOG0612|consen  207 LLDKSGHIKL-ADFGSCLKMDADGTVR  232 (1317)
T ss_pred             EecccCcEee-ccchhHHhcCCCCcEE
Confidence            4555555443 4456666665555554

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.29  E-value=1.9  Score=50.34  Aligned_cols=100  Identities=23%  Similarity=0.294  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhhhH
Q psy10797        307 DQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER--------------IKSNQLH  372 (517)
Q Consensus       307 ~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK--------------~KAdQKy  372 (517)
                      ..++.++.+|..++.+..++.+++++......|++.-...+--+++.++.....|.+|.              .|..+..
T Consensus       287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~  366 (775)
T PF10174_consen  287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI  366 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44778888888889999999999999999999998888888888999999888888765              3334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK  406 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~  406 (517)
                      -.+.+++..+..|+.-++-.+++....|.+|..+
T Consensus       367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555554444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.21  E-value=0.5  Score=49.49  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797        337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ  385 (517)
Q Consensus       337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E  385 (517)
                      ...+++-..+|..+.....+.+..|+++.++..++....+-|++.+...
T Consensus       215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~  263 (306)
T PF04849_consen  215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQH  263 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3334444444444555555555555555555555555555554444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0979|consensus

Probab=96.18  E-value=1.8  Score=51.43  Aligned_cols=9  Identities=22%  Similarity=0.519  Sum_probs=3.9

Q ss_pred             CCcccCCCC
Q psy10797         32 SSLIPMSPH   40 (517)
Q Consensus        32 ~~~~~~~~~   40 (517)
                      .|+|-|.-|
T Consensus        20 GsIvrI~l~   28 (1072)
T KOG0979|consen   20 GSIVRIELH   28 (1072)
T ss_pred             CceEEEEEe
Confidence            344444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=96.17  E-value=1  Score=47.72  Aligned_cols=44  Identities=14%  Similarity=0.145  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhhhHHHHhhcC--cHH-----HHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLA--DEE-----AMRKIKQLEDQTHQLQKQVA  317 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkla--d~E-----al~rL~~lE~EieeLr~kL~  317 (517)
                      ++++++.++++++.+++++..  +++     ..++++.++.++...+.+..
T Consensus       182 ~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~  232 (444)
T TIGR03017       182 ALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVM  232 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888752  221     23666666666666555544

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.16  E-value=2.1  Score=48.02  Aligned_cols=116  Identities=13%  Similarity=0.162  Sum_probs=76.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797        312 LQKQVATHKQEEEALLNEMEVTGQAFEDM------QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ  385 (517)
Q Consensus       312 Lr~kL~s~eqe~eALlsEIEsIgqAyEdm------QeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E  385 (517)
                      |...|+..+..++.|..||+.+.++|-=.      +.+-++.++   +.++...-+...-.+..+.|..+.+..+.+++.
T Consensus       314 l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~---el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~  390 (570)
T COG4477         314 LPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELK---ELESVLDEILENIEAQEVAYSELQDNLEEIEKA  390 (570)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence            33445566788888888999888888532      222333343   344433333334444567788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        386 VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       386 vk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      +...+...++-.+.+.+|.+.|..-+..+..+.+++...+.-++.
T Consensus       391 l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek  435 (570)
T COG4477         391 LTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEK  435 (570)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888878888888888887777776666666666655544443

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.14  E-value=0.0022  Score=66.42  Aligned_cols=39  Identities=15%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++|++|.--..+      |+|.||.+||+..+-.-.-+||+|..
T Consensus       274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            3899999875555      99999999999988777789999987

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.11  E-value=1.5  Score=45.58  Aligned_cols=30  Identities=10%  Similarity=0.240  Sum_probs=11.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        316 VATHKQEEEALLNEMEVTGQAFEDMQEQNS  345 (517)
Q Consensus       316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNq  345 (517)
                      ++.++++.+.|...++.+...+.++.+...
T Consensus       158 ~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~  187 (325)
T PF08317_consen  158 LELLQEDYAKLDKQLEQLDELLPKLRERKA  187 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444333333333333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.10  E-value=2.1  Score=50.00  Aligned_cols=138  Identities=14%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             chhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhc--CcHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy10797        244 TSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKL--ADEEAMRKIKQLEDQTHQLQKQVATHKQ  321 (517)
Q Consensus       244 ~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl--ad~Eal~rL~~lE~EieeLr~kL~s~eq  321 (517)
                      -|++.+.+|+.+|+..-.         .-..++.||..+..+++.+=+.+  +.+|-.++|..+-..+   -.+.++.+.
T Consensus        21 kae~e~~~lk~~l~~~~~---------~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~---s~e~e~~~~   88 (769)
T PF05911_consen   21 KAEAEAASLKQQLEAATQ---------QKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKK---SKEWEKIKS   88 (769)
T ss_pred             HHHHHHHHHHHHHHHHHH---------HhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH---hHHHHHHHH
Confidence            477888889988886543         23345667777777776553332  3444444442221111   000111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        322 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM  396 (517)
Q Consensus       322 e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ  396 (517)
                      +   |-..|..+++-+......|..+..-|.+++..+.+|.-+|..++.....++.-.+++++|+..|+-.+--.
T Consensus        89 ~---le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~  160 (769)
T PF05911_consen   89 E---LEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL  160 (769)
T ss_pred             H---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   11222333444455556666667777889999999999999999999999999999999999888765433

The function of this family is unknown.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.09  E-value=0.25  Score=55.71  Aligned_cols=122  Identities=17%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797        301 KIKQLEDQTHQLQKQVATHKQEEE----ALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR  376 (517)
Q Consensus       301 rL~~lE~EieeLr~kL~s~eqe~e----ALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam  376 (517)
                      -|++|+.-++.-..++..+.++-+    -|..|+..+..+...-....+++++++.+.......+..|--.-++.|..+.
T Consensus       395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~  474 (594)
T PF05667_consen  395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV  474 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333322    3556666666666655566666777777777766666666665566666666


Q ss_pred             HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        377 EEKDTLR---------EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH  422 (517)
Q Consensus       377 reKdaLe---------~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~  422 (517)
                      .+.+.+.         ..+-..-..+.||++.|.+.-..-|.++..+..++-.|.
T Consensus       475 ~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  475 KELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443         334445577899999999988888888888877776664

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.07  E-value=0.46  Score=44.97  Aligned_cols=41  Identities=22%  Similarity=0.424  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE  342 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe  342 (517)
                      +...+..+.+|..+++..++....+.+|++.+...+...++
T Consensus        83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~  123 (191)
T PF04156_consen   83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRE  123 (191)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33333344444444444444444444555555555544443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.07  E-value=0.1  Score=54.20  Aligned_cols=90  Identities=22%  Similarity=0.287  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10797        309 THQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA  388 (517)
Q Consensus       309 ieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~  388 (517)
                      +++++.+++.++++++.+..|++.+++..+++..+...+-.+..+.++...+..       ..+.....+......+...
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~-------~~~n~~~~~l~~~~~e~~s  117 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYW-------REYNELQLELIEFQEERDS  117 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444333333333333332222222       2233333344444445555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10797        389 LSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       389 Lk~QlekQ~e~I~kLeE  405 (517)
                      ++.|.+.....+.+|+.
T Consensus       118 l~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  118 LKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            55555555555555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.07  E-value=1.8  Score=43.13  Aligned_cols=140  Identities=14%  Similarity=0.250  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---hh-hhhhhH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL---LQQLREKDDANFKLMTE---RI-KSNQLH  372 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk---lqqL~EkED~n~KL~aE---K~-KAdQKy  372 (517)
                      +.|+..+.+.+.....+.....+-+.++.++.+++++|-|+...-.+.   +..+..-|+...+-+.|   ++ +..|+|
T Consensus        55 ~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry  134 (207)
T PF05010_consen   55 QMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY  134 (207)
T ss_pred             HHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555556666677778888899999999999999988776544   34445555555554432   22 233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK----ERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLH  448 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~----Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~q  448 (517)
                      .++..          +...+++..++.|.++...    -..|+..|-..+=++..+...++.-.+...|+++-.++|...
T Consensus       135 ~aLK~----------hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k  204 (207)
T PF05010_consen  135 QALKA----------HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK  204 (207)
T ss_pred             HHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44332          2234444555555544432    234555555554455555556655556667777777777654


Q ss_pred             H
Q psy10797        449 L  449 (517)
Q Consensus       449 L  449 (517)
                      +
T Consensus       205 ~  205 (207)
T PF05010_consen  205 M  205 (207)
T ss_pred             h
Confidence            3

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0287|consensus

Probab=96.01  E-value=0.0016  Score=68.32  Aligned_cols=46  Identities=13%  Similarity=0.174  Sum_probs=38.9

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      ..++|-||.+-++-     |+|.||.-||.+.+.. +-.||+|..  ...|++.
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~   74 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRN   74 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhh
Confidence            45899999998777     9999999999999976 679999998  6666553

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.98  E-value=4.4  Score=49.99  Aligned_cols=15  Identities=7%  Similarity=0.031  Sum_probs=8.6

Q ss_pred             hhHHHHHHhHhhhhc
Q psy10797        247 FQMSFYKSRWFDFRS  261 (517)
Q Consensus       247 ~~~~al~~~l~~~~~  261 (517)
                      .|+++|+.+|..+..
T Consensus       742 ~ri~el~~~IaeL~~  756 (1353)
T TIGR02680       742 RRIAELDARLAAVDD  756 (1353)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            355666666665554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.92  E-value=1.7  Score=53.42  Aligned_cols=106  Identities=16%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE-QNSRLLQQLREKDDANFKLMTERIKSNQLHKL  374 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe-QNqrklqqL~EkED~n~KL~aEK~KAdQKyfa  374 (517)
                      ++....++..-..+++++..++.+++..+    .++.|.+.|+.... ....+..++.........+..+.-++.+....
T Consensus       219 ~~~i~~l~e~~~~~~~~~~~le~l~~~~~----~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1353)
T TIGR02680       219 DDELTDVADALEQLDEYRDELERLEALER----ALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELET  294 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555666666666666665543    33445555555444 44555666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      +.++.+.++.++..+..+.+...+.+..|++
T Consensus       295 ~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~  325 (1353)
T TIGR02680       295 AREEERELDARTEALEREADALRTRLEALQG  325 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6666666666666666666555555555443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0964|consensus

Probab=95.92  E-value=4.3  Score=48.45  Aligned_cols=127  Identities=21%  Similarity=0.272  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF--------------EDMQEQ-------NSRLLQQLREKDDAN  358 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy--------------EdmQeQ-------NqrklqqL~EkED~n  358 (517)
                      .++...+.+++++..++..++.....|..|-+.+..-+              +++|.|       -+..+..+.+.++.+
T Consensus       258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki  337 (1200)
T KOG0964|consen  258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI  337 (1200)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            44444555555555555555544444444444443332              233332       344566666666666


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHH
Q psy10797        359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSL---------------------------QIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       359 ~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~---------------------------QlekQ~e~I~kLeE~Er~L~  411 (517)
                      .+---|-.+-.=+|.++.++-+.+...+..|+.                           .+++.+..|...++.+..++
T Consensus       338 ~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq  417 (1200)
T KOG0964|consen  338 EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQ  417 (1200)
T ss_pred             HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            666666666777788777776666666666554                           23444445556666777777


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10797        412 TVLTNAEKELHLRNQ  426 (517)
Q Consensus       412 ~kLs~lEKEL~~lkq  426 (517)
                      ..+.++++++...-.
T Consensus       418 ~e~~~~e~~l~~~~e  432 (1200)
T KOG0964|consen  418 KEIEDLESELKEKLE  432 (1200)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777654433

>KOG4643|consensus

Probab=95.88  E-value=3.1  Score=49.65  Aligned_cols=52  Identities=25%  Similarity=0.165  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy10797        331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTL  382 (517)
Q Consensus       331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaL  382 (517)
                      ..++.-.+.|++..+++++++++.+|.-.+|+.|+-|+-+-.....+..+.-
T Consensus       411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq  462 (1195)
T KOG4643|consen  411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ  462 (1195)
T ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4488888999999999999999999999999999999877776666554444

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.86  E-value=1.4  Score=47.47  Aligned_cols=34  Identities=6%  Similarity=-0.222  Sum_probs=18.1

Q ss_pred             ceeecccCcc-eeeeecchhhhHHHHHHhHhhhhc
Q psy10797        228 CFDIFSLTST-LFVSICTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       228 c~~i~~l~~~-~~~~~~~a~~~~~al~~~l~~~~~  261 (517)
                      +-.+..|+.+ +.-.+..+++++.+++.++.++..
T Consensus        84 G~~L~~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a  118 (457)
T TIGR01000        84 GDLLVVYDNGNEENQKQLLEQQLDNLKDQKKSLDT  118 (457)
T ss_pred             CCEEEEECchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443 333445566666666666666643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.86  E-value=2  Score=42.13  Aligned_cols=51  Identities=8%  Similarity=0.226  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR  346 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr  346 (517)
                      .|.-+-|..-..|+..|+..+...+..+.++...|.....-...+..++++
T Consensus        57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~  107 (194)
T PF15619_consen   57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH  107 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334466777777777777777777766666666666555555555555444

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.85  E-value=0.0034  Score=50.19  Aligned_cols=39  Identities=10%  Similarity=0.144  Sum_probs=25.7

Q ss_pred             cccccccccccccc------cccccchhhHHHHH-hhhccCCCC--CC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRY-ETRQRKCPK--CN  504 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl-~tR~RKCP~--C~  504 (517)
                      ..++|+|....+++      |+|+|..+.|.+++ ..+..+||.  |+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~   57 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN   57 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence            45899998887777      99999999999999 445669998  64

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.82  E-value=1.6  Score=40.74  Aligned_cols=59  Identities=17%  Similarity=0.148  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        394 EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII  452 (517)
Q Consensus       394 ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel  452 (517)
                      +..+..|+.|++.-......|......|.......+...+++..+....+++..+++++
T Consensus        76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel  134 (143)
T PF12718_consen   76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL  134 (143)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34444555555544444444444444444444444444455555555555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0979|consensus

Probab=95.82  E-value=1.6  Score=51.82  Aligned_cols=103  Identities=16%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      ..|..+++.-.+|...++..++..+.|..|++.+++-.+...+.-.. ...+.-++ ...++ .+=-+-+++|.+.+.++
T Consensus       181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~-~~~Ie~l~-~k~~~-v~y~~~~~ey~~~k~~~  257 (1072)
T KOG0979|consen  181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK-KSKIELLE-KKKKW-VEYKKHDREYNAYKQAK  257 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-Hhccc-cchHhhhHHHHHHHHHH
Confidence            55555666666677777777777777777777777777765443221 11111111 11222 23345567777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      +.+..+++.+..-...-...+..|+.
T Consensus       258 ~r~k~~~r~l~k~~~pi~~~~eeLe~  283 (1072)
T KOG0979|consen  258 DRAKKELRKLEKEIKPIEDKKEELES  283 (1072)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence            77777777766554444444444444

>KOG4807|consensus

Probab=95.80  E-value=1.1  Score=48.69  Aligned_cols=87  Identities=23%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             cccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy10797        270 YGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ----VATHKQEEEALLNEMEVT-GQAFEDMQEQN  344 (517)
Q Consensus       270 ~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~k----L~s~eqe~eALlsEIEsI-gqAyEdmQeQN  344 (517)
                      .|.+.|+++|.+++.....-|-...+++.         .+..++..    ...+++..+-=..+||.. .+-.+++|.|.
T Consensus       291 D~~~~L~k~vQ~L~AQle~~R~q~e~~q~---------~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqH  361 (593)
T KOG4807|consen  291 DGHEALEKEVQALRAQLEAWRLQGEAPQS---------ALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQH  361 (593)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhccCchh---------hHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45667888888877666554443322221         11111111    113445555556677665 45678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797        345 SRLLQQLREKDDANFKLMTERIKS  368 (517)
Q Consensus       345 qrklqqL~EkED~n~KL~aEK~KA  368 (517)
                      ++-++.|++-.|.   |.+|-.-|
T Consensus       362 qRELekLreEKdr---LLAEETAA  382 (593)
T KOG4807|consen  362 QRELEKLREEKDR---LLAEETAA  382 (593)
T ss_pred             HHHHHHHHHHHHh---hhhhhhhh
Confidence            9988888765553   34444444

>KOG1103|consensus

Probab=95.79  E-value=1.8  Score=46.53  Aligned_cols=128  Identities=20%  Similarity=0.283  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL-LQQLREKDDANFKLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk-lqqL~EkED~n~KL~aEK~KAdQKyfaamreKd  380 (517)
                      ..-||.|-++|+++++=-..+-.-...+-+.++--.++-.....++ ++-+.|......|...|+.||.+.--.+.++|.
T Consensus       141 t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdks  220 (561)
T KOG1103|consen  141 TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKS  220 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCcc
Confidence            3456666667776665222221111122223333333322222222 344567777888888888888887776666651


Q ss_pred             -------HHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 -------TLREQV-QAL--SLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       381 -------aLe~Ev-k~L--k~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                             .+..|. +-|  .+|++|+   |+.+.-.-..|+.++...+|.-+.++..+++.+
T Consensus       221 r~~k~eee~aaERerglqteaqvek~---i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk  279 (561)
T KOG1103|consen  221 RTKKGEEEAAAERERGLQTEAQVEKL---IEEFDIEREFLRAELEREEKRQKMLKEEMESLK  279 (561)
T ss_pred             ccCCChHHHHHHHhhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   122221 111  1223332   223322223466666666666666666665554

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=95.79  E-value=1.5  Score=48.48  Aligned_cols=171  Identities=14%  Similarity=0.192  Sum_probs=97.5

Q ss_pred             eeecccCcceeeeecchhhhHHHHHHhHhhhh----cCCccccccccc-----HHHHHHHHHHHhhhHHHHhhcCc--HH
Q psy10797        229 FDIFSLTSTLFVSICTSAFQMSFYKSRWFDFR----SLSDSASNIYGS-----LEFRKFACVVRDSKRDERKKLAD--EE  297 (517)
Q Consensus       229 ~~i~~l~~~~~~~~~~a~~~~~al~~~l~~~~----~~~d~~~~i~~e-----~elr~rlk~l~e~~~k~rqklad--~E  297 (517)
                      +++.+=++.+-|.+..+..-+..++..|..++    ..+........-     ..|+.++..++++.+.+...+-.  -+
T Consensus       105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~  184 (511)
T PF09787_consen  105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVE  184 (511)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHH
Confidence            55555556667778888888999999999982    233332221111     35555666665555443322211  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVA-------------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE  364 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~-------------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aE  364 (517)
                      -+.++-..|.+...|...+.             ..++..+.+..+.+...+||.+....+++-+   .++|..+..|-..
T Consensus       185 fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL---q~kEklI~~LK~~  261 (511)
T PF09787_consen  185 FLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL---QSKEKLIESLKEG  261 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHhc
Confidence            12444444444444443333             4445666777777777777777775555544   3455555555432


Q ss_pred             hhh-hhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        365 RIK-SNQL------HKLAREEKDTLREQVQALSLQIEAMHTAIRK  402 (517)
Q Consensus       365 K~K-AdQK------yfaamreKdaLe~Evk~Lk~QlekQ~e~I~k  402 (517)
                      -.. .-+.      ...++.|++.+..+++.|+.|++.....++.
T Consensus       262 ~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d  306 (511)
T PF09787_consen  262 CLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQD  306 (511)
T ss_pred             ccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222 1111      5678889999999999999888544444433

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.74  E-value=3.1  Score=47.04  Aligned_cols=21  Identities=0%  Similarity=-0.124  Sum_probs=15.5

Q ss_pred             eecchhhhHHHHHHhHhhhhc
Q psy10797        241 SICTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~~~  261 (517)
                      ....+..++++|+..+..+..
T Consensus       203 ~~~~~~~~~~~le~el~~l~~  223 (650)
T TIGR03185       203 LPSSILSEIEALEAELKEQSE  223 (650)
T ss_pred             cchHHHHHHHHHHHHHHHHHH
Confidence            345677788888888887766

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.73  E-value=3.3  Score=43.60  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        372 HKLAREEKDTLREQVQALSL-QIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD  429 (517)
Q Consensus       372 yfaamreKdaLe~Evk~Lk~-QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale  429 (517)
                      ...++.+|..++..+..-+. .+++....|.+|+-.....+..+..+.++--.+.++++
T Consensus       115 l~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE  173 (310)
T PF09755_consen  115 LNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE  173 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence            33444555555444443332 23444444444443333344444444444434444443

>KOG0802|consensus

Probab=95.65  E-value=0.005  Score=67.88  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=32.3

Q ss_pred             ccccccccccc--------cc--cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        467 EFSAKFVNFRR--------KS--YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~--------K~--CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .-.|+||.+..        |-  |+|+|+..|++.|++ |+..||.|+.
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~  338 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRT  338 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchh
Confidence            45899999842        22  999999999999997 5889999998

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.55  E-value=2.5  Score=46.86  Aligned_cols=55  Identities=11%  Similarity=0.090  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797        322 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR  376 (517)
Q Consensus       322 e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam  376 (517)
                      +.+-.++|=+.+-.-.+.+--+-.++...+.+++-...-..-+--|.=++|..+.
T Consensus       369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~  423 (622)
T COG5185         369 QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI  423 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444333333333333334444433

>KOG2879|consensus

Probab=95.51  E-value=0.0065  Score=62.30  Aligned_cols=40  Identities=13%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~C~~  505 (517)
                      ..-.|++|...+-.      |+|++|..||.++.... .=.||.||.
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~  284 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE  284 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence            33579999998877      99999999999987653 238999998

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.50  E-value=0.57  Score=42.76  Aligned_cols=69  Identities=19%  Similarity=0.400  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhhHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        273 LEFRKFACVVRDSKRDERKKL-ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ  341 (517)
Q Consensus       273 ~elr~rlk~l~e~~~k~rqkl-ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ  341 (517)
                      .+++...+.+.++..+|.+.+ .-.++...|..+.++...++..+..++.+.++...+++.-...|+.-.
T Consensus        31 ~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk  100 (132)
T PF07926_consen   31 EDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK  100 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            355555666666666665554 345567788888888888888888887777777777777777777633

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR00634 recN DNA repair protein RecN

Probab=95.50  E-value=2.2  Score=47.44  Aligned_cols=13  Identities=8%  Similarity=0.281  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQ  392 (517)
Q Consensus       380 daLe~Evk~Lk~Q  392 (517)
                      +.++..+..++..
T Consensus       304 ~ele~RL~~l~~L  316 (563)
T TIGR00634       304 NEIEERLAQIKRL  316 (563)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=95.49  E-value=3.2  Score=41.74  Aligned_cols=18  Identities=17%  Similarity=0.538  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        337 FEDMQEQNSRLLQQLREK  354 (517)
Q Consensus       337 yEdmQeQNqrklqqL~Ek  354 (517)
                      +..+....++.|.+++.+
T Consensus       125 l~~~l~ea~~mL~emr~r  142 (264)
T PF06008_consen  125 LQRALAEAQRMLEEMRKR  142 (264)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            334444444444444444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=95.37  E-value=1.8  Score=38.32  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797        305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE  384 (517)
Q Consensus       305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~  384 (517)
                      ...++..++..|+.++++..   .-++.+.+-|+.+...-..+-.++..-+..+..--..+.+|.++.....+.+.....
T Consensus         5 kkre~~~~~~~l~~kr~e~~---~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~   81 (126)
T PF13863_consen    5 KKREMFLVQLALDTKREEIE---RREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEA   81 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777777754   445556667777777777777777788888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        385 QVQALSLQIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~  411 (517)
                      ++..|+.+++.....|.++++.-..+.
T Consensus        82 ei~~l~~~l~~l~~~~~k~e~~l~~~~  108 (126)
T PF13863_consen   82 EIKKLKAELEELKSEISKLEEKLEEYK  108 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888654443

>KOG0995|consensus

Probab=95.32  E-value=4.2  Score=45.88  Aligned_cols=26  Identities=27%  Similarity=0.265  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        376 REEKDTLREQVQALSLQIEAMHTAIR  401 (517)
Q Consensus       376 mreKdaLe~Evk~Lk~QlekQ~e~I~  401 (517)
                      -++.+.+..++..|+.++++|.--++
T Consensus       307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~  332 (581)
T KOG0995|consen  307 EEEIEKLQKENDELKKQIELQGISGE  332 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            34556666667777777776653333

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=95.26  E-value=3.2  Score=41.22  Aligned_cols=129  Identities=17%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTE--RIKSNQLHKLAREEK  379 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aE--K~KAdQKyfaamreK  379 (517)
                      +..||..+......+...+.....+.+++-.+...=+..+.+-......+.+.+.....+...  ..=+.-....+.-+.
T Consensus        80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~  159 (240)
T PF12795_consen   80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL  159 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence            344455555555555555555555666666666666665555555555555544443332111  111122333344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      ..+..++..++..+........=++-.-..+..++..++.++..++..+..
T Consensus       160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~  210 (240)
T PF12795_consen  160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ  210 (240)
T ss_pred             HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555554443222222222222222444556666666666666544

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.24  E-value=4.6  Score=42.11  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=18.6

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       359 ~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      ..|.....+.+..+..+.+.++.|..++..|+...
T Consensus       166 ~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~  200 (325)
T PF08317_consen  166 AKLDKQLEQLDELLPKLRERKAELEEELENLKQLV  200 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555556666666666665543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.23  E-value=0.0067  Score=59.94  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=32.8

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      -+|.|.||...++.     |||.||..|--.++.. --+|..|++
T Consensus       195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk  238 (259)
T COG5152         195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGK  238 (259)
T ss_pred             CceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecch
Confidence            45999999998888     9999999998887754 457888877

>KOG4172|consensus

Probab=95.22  E-value=0.0037  Score=50.42  Aligned_cols=47  Identities=15%  Similarity=0.157  Sum_probs=40.4

Q ss_pred             cccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797        468 FSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLY  514 (517)
Q Consensus       468 ~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy  514 (517)
                      -.|+||.+++-|     |||+ .|.+|--+-.+.-.-.||.|++...||.+-|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY   60 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY   60 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence            469999999998     9998 6999988877767889999999888887766

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.15  E-value=1.5  Score=51.21  Aligned_cols=126  Identities=15%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             cchhhhHHHHHHhHhhhhcCC-ccc----ccccccHHHHHHHHHHHhhhHHHHhhcC--c---HHHHHHHHHHHHHHHHH
Q psy10797        243 CTSAFQMSFYKSRWFDFRSLS-DSA----SNIYGSLEFRKFACVVRDSKRDERKKLA--D---EEAMRKIKQLEDQTHQL  312 (517)
Q Consensus       243 ~~a~~~~~al~~~l~~~~~~~-d~~----~~i~~e~elr~rlk~l~e~~~k~rqkla--d---~Eal~rL~~lE~EieeL  312 (517)
                      +...+..++++..+..+.+.. +..    .......++..++..++.....-...++  .   +....+|..+|..+++|
T Consensus       557 qDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eL  636 (769)
T PF05911_consen  557 QDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEEL  636 (769)
T ss_pred             HHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335556666666666665521 111    1111122444445544443333222221  1   22336777777777788


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10797        313 QKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS  368 (517)
Q Consensus       313 r~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA  368 (517)
                      +.+|+..++...++..+|+.+..-|+.+..+..-.-..+...-.++..|-.|--+.
T Consensus       637 q~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~e  692 (769)
T PF05911_consen  637 QSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKE  692 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887888888888877777777766555444444444444444443333

The function of this family is unknown.

>KOG4807|consensus

Probab=95.07  E-value=6.6  Score=42.94  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE  394 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle  394 (517)
                      +.|++++..-.+-+.+|.++|--+...+-.   .|-    -..|......++.+.|..-++.|+..+.
T Consensus       420 leelqsvqRELeVLSEQYSQKCLEnahLaq---alE----aerqaLRqCQrEnQELnaHNQELnnRLa  480 (593)
T KOG4807|consen  420 LEELQSVQRELEVLSEQYSQKCLENAHLAQ---ALE----AERQALRQCQRENQELNAHNQELNNRLA  480 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence            445555555555555555555433222111   111    1235555666777777777776665543

>PF13514 AAA_27: AAA domain

Probab=95.06  E-value=5.3  Score=48.02  Aligned_cols=37  Identities=5%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA  336 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA  336 (517)
                      ..+.....++..++.+++..+++.+.+..++..+-..
T Consensus       736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~  772 (1111)
T PF13514_consen  736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAER  772 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555555555555444

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=95.06  E-value=0.8  Score=52.43  Aligned_cols=19  Identities=11%  Similarity=-0.026  Sum_probs=10.0

Q ss_pred             eeecchhhhHHHHHHhHhh
Q psy10797        240 VSICTSAFQMSFYKSRWFD  258 (517)
Q Consensus       240 ~~~~~a~~~~~al~~~l~~  258 (517)
                      +....-+.-+++|...|..
T Consensus       202 ~~~~~~~~~~~~l~~~l~V  220 (726)
T PRK09841        202 LSQRTELEAINALQETFTV  220 (726)
T ss_pred             EEecCHHHHHHHHHhcCeE
Confidence            4444444555556665553

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=95.03  E-value=3.7  Score=39.91  Aligned_cols=117  Identities=18%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             cCcHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        293 LADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       293 lad~Eal--~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      +.||+..  +-|+.++.++.+++..+.........+..+++....--++...++..-+.  ...||.......++.....
T Consensus        21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~--~g~edLAr~al~~k~~~e~   98 (221)
T PF04012_consen   21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA--AGREDLAREALQRKADLEE   98 (221)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHH
Confidence            4466633  77777777777777777777777777777777777776666666655443  3466666666666666666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~  411 (517)
                      ....+....+....++..|+.++.+....|..++.+...+.
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~  139 (221)
T PF04012_consen   99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK  139 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666665554444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.02  E-value=7.9  Score=43.62  Aligned_cols=29  Identities=14%  Similarity=0.075  Sum_probs=22.0

Q ss_pred             hhhhHHHHHHhHhhhhcCCcccccccccH
Q psy10797        245 SAFQMSFYKSRWFDFRSLSDSASNIYGSL  273 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~  273 (517)
                      -+.+++..+..|++|-...+.+++|.+.+
T Consensus       169 lEk~Le~i~~~l~qf~~lt~~Gd~ieA~e  197 (570)
T COG4477         169 LEKKLENIEEELSQFVELTSSGDYIEARE  197 (570)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence            45677778888888888777777777766

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=95.02  E-value=3.3  Score=39.25  Aligned_cols=89  Identities=19%  Similarity=0.250  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        336 AFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLT  415 (517)
Q Consensus       336 AyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs  415 (517)
                      -|+.++-.|+.+...+.|+.....+|-.--.+.-|.....++....+..+...++..+....+.+.++.+.-........
T Consensus        43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~  122 (177)
T PF13870_consen   43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD  122 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58888999999999999998888888766666667777777777777777777777776666666666665444444444


Q ss_pred             HHHHHHHHH
Q psy10797        416 NAEKELHLR  424 (517)
Q Consensus       416 ~lEKEL~~l  424 (517)
                      .+.++...+
T Consensus       123 k~~~~~~~l  131 (177)
T PF13870_consen  123 KLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHH
Confidence            444444433

>KOG0804|consensus

Probab=95.01  E-value=0.9  Score=49.83  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=16.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        315 QVATHKQEEEALLNEMEVTGQAFEDMQEQN  344 (517)
Q Consensus       315 kL~s~eqe~eALlsEIEsIgqAyEdmQeQN  344 (517)
                      +++..++.++.+..|.+.+.++-.++...-
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k  377 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEK  377 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            555555555555555555555555544433

>KOG0804|consensus

Probab=94.93  E-value=1.6  Score=47.95  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      .|...-+..++++++..+++++..+++-.....-++|.++.|.+.......
T Consensus       367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~  417 (493)
T KOG0804|consen  367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG  417 (493)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            556666777888888888888888877777777777777777654443333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.92  E-value=0.007  Score=68.62  Aligned_cols=54  Identities=15%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             eeecchhhhHHHHHHhHhhhhcCCcccccccccH-HHHH---HHHHHHhhhHHHHhhc
Q psy10797        240 VSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSL-EFRK---FACVVRDSKRDERKKL  293 (517)
Q Consensus       240 ~~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~-elr~---rlk~l~e~~~k~rqkl  293 (517)
                      ..+...+..+..|+.....+...+..++..+-|- .+|.   |+..++....+||+|+
T Consensus       267 ~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKL  324 (713)
T PF05622_consen  267 IELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKL  324 (713)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555444444444442 3333   2333444444555554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=94.91  E-value=3.8  Score=39.35  Aligned_cols=121  Identities=16%  Similarity=0.248  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-------
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH-------  372 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy-------  372 (517)
                      .=.+....|.++|+..|+..+.+..-...|+|.+++.+..+......-=.++....+.-.|-.-|+++.=|..       
T Consensus        20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~   99 (159)
T PF05384_consen   20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRER   99 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555677888888888888888888888888888887665553333333322333333333433333333       


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 -KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE  420 (517)
Q Consensus       373 -faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE  420 (517)
                       ..++.-.|.|+..++.+...+++....+.++.=.-.-|...|.++...
T Consensus       100 E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~  148 (159)
T PF05384_consen  100 EKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQ  148 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence             333444455555555555555555555555444444444444444333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.86  E-value=4.4  Score=42.53  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=16.6

Q ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        361 LMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       361 L~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      |+....+.+..+..+.+..+.|..|+..|+...
T Consensus       163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~  195 (312)
T smart00787      163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLE  195 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444455555555555555555555443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.84  E-value=3.6  Score=38.79  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        355 DDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKE  420 (517)
Q Consensus       355 ED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE  420 (517)
                      ++.+..++.++.....-..+++++|+.|..+       +.+-++.|+.|+-....+...|..+|.+
T Consensus        58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~-------lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   58 EEELEELTSELNQLELELDTLRSEKENLDKE-------LQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333334334333333344455555555544       4455555666665555555555555555

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.83  E-value=0.02  Score=57.65  Aligned_cols=47  Identities=19%  Similarity=0.259  Sum_probs=38.2

Q ss_pred             cccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEee
Q psy10797        466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLY  514 (517)
Q Consensus       466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIy  514 (517)
                      ..|.|||....+..         |||||+..++++- . ....||.|+.  ...||..|-
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~DiI~Ln  169 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEEDIIPLN  169 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccCCEEEec
Confidence            56999997765422         9999999999996 3 3568999999  889998774

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.83  E-value=4.4  Score=39.81  Aligned_cols=61  Identities=15%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD  356 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED  356 (517)
                      .+=+.-|..+.++|++++.+.+..++....+..|...+....+.++..+..+-.++...+.
T Consensus        23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k   83 (201)
T PF13851_consen   23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK   83 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455889999999999999999988888888888888888888888888777777766554

>PRK11519 tyrosine kinase; Provisional

Probab=94.81  E-value=1.4  Score=50.50  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLN  328 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALls  328 (517)
                      .+.+-++=+++++.+++.+|+..+++.+.+..
T Consensus       264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~  295 (719)
T PRK11519        264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ  295 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.80  E-value=3.9  Score=40.54  Aligned_cols=38  Identities=16%  Similarity=0.331  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS  345 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNq  345 (517)
                      +++.++.+++.++...+.+..+|+...+-.++.++.+.
T Consensus        64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~  101 (302)
T PF10186_consen   64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLE  101 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.80  E-value=4.7  Score=39.96  Aligned_cols=25  Identities=12%  Similarity=0.286  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQE  322 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe  322 (517)
                      +..+|..+..++.+++...+.++.+
T Consensus        18 ~~~~L~~~~~~l~~~~~~~~~l~~~   42 (302)
T PF10186_consen   18 VNNRLLELRSELQQLKEENEELRRR   42 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.80  E-value=2.9  Score=43.96  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ  350 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq  350 (517)
                      .++.|+.++..++.++..|-.|...+-..-....++.+.++.+
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d  203 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD  203 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH
Confidence            4578999999999999999888877777666666666666543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0249|consensus

Probab=94.79  E-value=2.4  Score=49.01  Aligned_cols=109  Identities=25%  Similarity=0.287  Sum_probs=59.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHhh-hhhhhHHHHHHHHHH
Q psy10797        310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF----KL---MTERI-KSNQLHKLAREEKDT  381 (517)
Q Consensus       310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~----KL---~aEK~-KAdQKyfaamreKda  381 (517)
                      .+|...++++....+---.=+++|.+-++..++.|+.+. ....+++.|.    .|   +-|+. -+.++-.++.++|+.
T Consensus       142 ael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~-rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~  220 (916)
T KOG0249|consen  142 AELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ-RARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNR  220 (916)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444444445566666666666554432 2222222221    11   00111 134556677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        382 LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      |..|+.+++++++.....-.++...+..|+.++..++.
T Consensus       221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~  258 (916)
T KOG0249|consen  221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR  258 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            88888888888877766655555555555555555553

>KOG1853|consensus

Probab=94.77  E-value=6  Score=41.04  Aligned_cols=55  Identities=25%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL  361 (517)
Q Consensus       304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL  361 (517)
                      .+|.++.+|+.++..++.++.-|..|.+++-.-+++   |..+-++|...++|.+..+
T Consensus        49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~s~Leddlsqt  103 (333)
T KOG1853|consen   49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED---QRVQFYQQESQLEDDLSQT  103 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            567777788888888888888888888888766665   4444556666666666554

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=94.76  E-value=3.7  Score=45.41  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             hhHHHHHHhHhhhhc-CC----cccccccccHHHHHHHHHHHhhhHH----------------------HHhhcCcHHHH
Q psy10797        247 FQMSFYKSRWFDFRS-LS----DSASNIYGSLEFRKFACVVRDSKRD----------------------ERKKLADEEAM  299 (517)
Q Consensus       247 ~~~~al~~~l~~~~~-~~----d~~~~i~~e~elr~rlk~l~e~~~k----------------------~rqklad~Eal  299 (517)
                      ..-=||+..|-.++. +-    -++..=.+-.-|+.+|++++-.-.+                      |+-.+.--|..
T Consensus       310 eedmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~  389 (527)
T PF15066_consen  310 EEDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIE  389 (527)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHH
Confidence            344678888887776 22    2222222334677788877754433                      22222333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR  346 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr  346 (517)
                      ..+.-|.+-++.-++.|...+.+-++|.-|++.|-.-|--+|+.-.-
T Consensus       390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~  436 (527)
T PF15066_consen  390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT  436 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44445555555555666666777777777777777777776665443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.71  E-value=1.8  Score=45.08  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD  356 (517)
Q Consensus       318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED  356 (517)
                      .-+.+..+|-.|-.++..+.+++....+++..++.-+|.
T Consensus        57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~   95 (307)
T PF10481_consen   57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES   95 (307)
T ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence            333444444555555555555555555555554444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.69  E-value=2.8  Score=41.90  Aligned_cols=60  Identities=12%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        352 REKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       352 ~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~  411 (517)
                      .....++.++..|+....+.|..+.++.+.++..++.++.+++.+.+.|.+|++.-..+.
T Consensus        38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555666777888899999999999999999999998888888877654443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.68  E-value=5.4  Score=40.10  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        272 SLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQL  351 (517)
Q Consensus       272 e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL  351 (517)
                      -+++...++........-+..+  ......+..++.+++.|..+........+.+....+.+-+.-+++......+...+
T Consensus        26 ~e~~~~~L~~~~~~~~~~~~~~--~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i  103 (264)
T PF06008_consen   26 IEDLTNQLRSYRSKLNPQKQQL--DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNI  103 (264)
T ss_pred             HHHHHHHHHHHhccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444433322222  22223355555666666665555555555555555544444444444444444444


Q ss_pred             HHHHHH
Q psy10797        352 REKDDA  357 (517)
Q Consensus       352 ~EkED~  357 (517)
                      .+.-+.
T Consensus       104 ~~l~~~  109 (264)
T PF06008_consen  104 QELIEQ  109 (264)
T ss_pred             HHHHHH
Confidence            433333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.66  E-value=3.6  Score=37.96  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             cHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        272 SLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ  350 (517)
Q Consensus       272 e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq  350 (517)
                      ..++..=+.-+.+.....++-+. .++...++..++.+++.|...++.++...+.+-.|+.........++.++..+-..
T Consensus        30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~  109 (151)
T PF11559_consen   30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK  109 (151)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666655444442 55666788888888888888888888887777777777777777766666666665


Q ss_pred             HHHHHHHHHHH
Q psy10797        351 LREKDDANFKL  361 (517)
Q Consensus       351 L~EkED~n~KL  361 (517)
                      +...-|.+.|+
T Consensus       110 ~k~~kee~~kl  120 (151)
T PF11559_consen  110 LKQEKEELQKL  120 (151)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=94.63  E-value=3.3  Score=41.95  Aligned_cols=50  Identities=16%  Similarity=0.128  Sum_probs=28.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN  344 (517)
Q Consensus       295 d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN  344 (517)
                      +++....++.++.+++.++.+++..+.+...+..|++.....++..+.+.
T Consensus        75 ~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l  124 (334)
T TIGR00998        75 PTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKL  124 (334)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666666555555566666666665555544443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=94.60  E-value=4.7  Score=43.12  Aligned_cols=62  Identities=29%  Similarity=0.308  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      -++++.||++++.||....+-..|.-.+       +..+..-..-++.|++.|+.|+++.......-+|
T Consensus       101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~-------~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee  162 (401)
T PF06785_consen  101 SEQLQSQNQKLKNQLFHVREVFMKTKGD-------IQHLEGLIRHLREENQCLQLQLDALQQECGEKEE  162 (401)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence            3567888888888888877755554333       3333333344445555555555544444433333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.60  E-value=3.1  Score=48.21  Aligned_cols=19  Identities=47%  Similarity=0.625  Sum_probs=10.6

Q ss_pred             cCcHHHHHHHHHHHHHHHH
Q psy10797        293 LADEEAMRKIKQLEDQTHQ  311 (517)
Q Consensus       293 lad~Eal~rL~~lE~Eiee  311 (517)
                      .+.++..+|++.+..+.++
T Consensus       558 ~ar~ei~~rv~~Lk~~~e~  576 (717)
T PF10168_consen  558 LAREEIQRRVKLLKQQKEQ  576 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3556666666555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1937|consensus

Probab=94.56  E-value=9.3  Score=42.33  Aligned_cols=20  Identities=10%  Similarity=-0.062  Sum_probs=10.6

Q ss_pred             ecchhhhHHHHHHhHhhhhc
Q psy10797        242 ICTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       242 ~~~a~~~~~al~~~l~~~~~  261 (517)
                      +..-..|...+++.|..+..
T Consensus       260 les~~sq~~e~~selE~llk  279 (521)
T KOG1937|consen  260 LESKRSQFEEQNSELEKLLK  279 (521)
T ss_pred             HHhhhHHHHHHHHHHHHHHH
Confidence            34444555566666655544

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.55  E-value=3.2  Score=39.29  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797        305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM  340 (517)
Q Consensus       305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm  340 (517)
                      ++.++.+++..+..+.++.+.+-..+.....-+++.
T Consensus        79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~  114 (191)
T PF04156_consen   79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKL  114 (191)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455544444444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.021  Score=60.95  Aligned_cols=44  Identities=23%  Similarity=0.405  Sum_probs=35.1

Q ss_pred             hccccccccccccccc---------cc-------c--cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        461 EFGKDREFSAKFVNFR---------RK-------S--YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       461 EKLKk~e~kC~iC~~r---------~K-------~--CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |+|-...=-|.+|+|.         ||       -  |||.|=-+|++.|++ |+..||.|+.
T Consensus       281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~  342 (491)
T COG5243         281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRR  342 (491)
T ss_pred             hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccC
Confidence            4443255679999985         22       2  999999999999997 7889999998

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=94.53  E-value=0.01  Score=69.02  Aligned_cols=142  Identities=23%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCc---------HHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLAD---------EEA----MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM  340 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad---------~Ea----l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm  340 (517)
                      ++...+..++.....-+.++..         +++    ..+|..++.++++++.+..+++..-.-|..|++.+..-.+..
T Consensus       289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~  368 (859)
T PF01576_consen  289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA  368 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555421         111    155566666666666666666666666666666666555555


Q ss_pred             HHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        341 QEQNSRLL-------QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTV  413 (517)
Q Consensus       341 QeQNqrkl-------qqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~k  413 (517)
                      +..+..+-       .++.++......+..|       ..++.++...+..++-.|+..++...+.+..++-..+.|+..
T Consensus       369 ~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e-------~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~E  441 (859)
T PF01576_consen  369 QAAAAELEKKQRKFDKQLAEWKAKVEELQAE-------RDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDE  441 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            54432222       3333333333333222       234455556666666666666666666666666666666655


Q ss_pred             HHHHHHHHH
Q psy10797        414 LTNAEKELH  422 (517)
Q Consensus       414 Ls~lEKEL~  422 (517)
                      |.++..++.
T Consensus       442 l~dl~~q~~  450 (859)
T PF01576_consen  442 LEDLTSQLD  450 (859)
T ss_dssp             ---------
T ss_pred             hccchhhhh
Confidence            555444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG2660|consensus

Probab=94.48  E-value=0.018  Score=60.34  Aligned_cols=38  Identities=13%  Similarity=0.350  Sum_probs=34.1

Q ss_pred             ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      -..|.+|.--+.|      |.|.||..||-+.++. ...||.|+.
T Consensus        15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i   58 (331)
T KOG2660|consen   15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDI   58 (331)
T ss_pred             ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccce
Confidence            3579999987766      9999999999999987 899999998

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.45  E-value=7.1  Score=40.44  Aligned_cols=17  Identities=18%  Similarity=0.305  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10797        394 EAMHTAIRKLEEKERFL  410 (517)
Q Consensus       394 ekQ~e~I~kLeE~Er~L  410 (517)
                      +.=..+|.++++.++.|
T Consensus       144 ~aDk~ile~qk~dk~~L  160 (265)
T COG3883         144 DADKKILEQQKEDKKSL  160 (265)
T ss_pred             HHhHHHHHHHHHHHHHH
Confidence            33333444444433333

>KOG0946|consensus

Probab=94.43  E-value=7.6  Score=45.66  Aligned_cols=54  Identities=24%  Similarity=0.268  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        303 KQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD  356 (517)
Q Consensus       303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED  356 (517)
                      .++...|.++..+.+++++...+|..|.+.+..++.+..++-+++..|+...+-
T Consensus       660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~  713 (970)
T KOG0946|consen  660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN  713 (970)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444556666666777777788888888887777777776666665554443

>KOG4643|consensus

Probab=94.41  E-value=15  Score=44.16  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=9.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q psy10797        319 HKQEEEALLNEMEVTGQAFED  339 (517)
Q Consensus       319 ~eqe~eALlsEIEsIgqAyEd  339 (517)
                      +..|.+.|..|+++...++..
T Consensus       441 L~~E~ekl~~e~~t~~~s~~r  461 (1195)
T KOG4643|consen  441 LQFELEKLLEETSTVTRSLSR  461 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHhHHH
Confidence            334444444455554444444

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=94.37  E-value=16  Score=44.08  Aligned_cols=19  Identities=0%  Similarity=-0.375  Sum_probs=8.6

Q ss_pred             eecchhhhHHHHHHhHhhh
Q psy10797        241 SICTSAFQMSFYKSRWFDF  259 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~  259 (517)
                      ........+..++..+..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~  249 (1047)
T PRK10246        231 EEKQLLTAQQQQQQSLNWL  249 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.34  E-value=0.65  Score=45.97  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10797        295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM  330 (517)
Q Consensus       295 d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEI  330 (517)
                      .|.+..++.++|.|+++|+.+++..+++.+....|+
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l  123 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM  123 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            456667888888888888888888776654444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.34  E-value=12  Score=42.66  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE  338 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE  338 (517)
                      +..++..++.+++.|+..+....++.+....+.+.+++.++
T Consensus       340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555544444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.23  E-value=6.6  Score=39.19  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN-SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN-qrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd  380 (517)
                      +...|.++.+|+.+++.+...+.    +|..+-..|+..-.+. ...=.+....+..+.++..||-.       +..+..
T Consensus        18 ~~~~E~e~~~l~~k~~e~~~~~~----~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq-------~~~dL~   86 (207)
T PF05010_consen   18 VAEKEEEEQELKKKYEELHKENQ----EMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQ-------AYADLN   86 (207)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHH-------HHHHHH
Confidence            33445566666666665555433    3333333333322221 01111122223333444444322       344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN  425 (517)
Q Consensus       381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk  425 (517)
                      +++.-...|-...+++.+.|.-++.-|..|...+.+....+....
T Consensus        87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e  131 (207)
T PF05010_consen   87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEE  131 (207)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            555555556666677777777777777777766655555444333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.21  E-value=14  Score=42.88  Aligned_cols=40  Identities=30%  Similarity=0.496  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED  339 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd  339 (517)
                      .+++.|++........|.....+-++|.+|++.+-++...
T Consensus       268 ~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~  307 (786)
T PF05483_consen  268 DKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQE  307 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence            5555555555555555666777778888888877776655

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0163|consensus

Probab=94.20  E-value=9  Score=44.97  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE  353 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E  353 (517)
                      .+.+...+..+-+..  -+...++....+.....+|++|-++++.-.-..+.+++|++...++|+++-.....|-+|..+
T Consensus       844 ~l~kns~k~~ei~s~--lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~  921 (1259)
T KOG0163|consen  844 ALLKNSLKTIEILSR--LKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIE  921 (1259)
T ss_pred             HHHHhhHHHHHHHHH--HhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            444455555544433  223567777778888888899988888655555678899999999999987777654444443


Q ss_pred             HHHHHHH
Q psy10797        354 KDDANFK  360 (517)
Q Consensus       354 kED~n~K  360 (517)
                      --++..|
T Consensus       922 e~er~rk  928 (1259)
T KOG0163|consen  922 ELERLRK  928 (1259)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG4628|consensus

Probab=94.13  E-value=0.027  Score=59.60  Aligned_cols=38  Identities=11%  Similarity=0.217  Sum_probs=33.5

Q ss_pred             cccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        468 FSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       468 ~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .-|-||.+.++.        |.|.|=..||+.||.+..+.||.|+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~  275 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR  275 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence            489999998877        99999999999999876445999998

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.10  E-value=6.4  Score=39.61  Aligned_cols=114  Identities=20%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             cCcHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        293 LADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       293 lad~Eal--~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      ..||+.+  +.|...+.++.+++..++..-.....+..+++....--+++++++..-++.  ..|+...+          
T Consensus        22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~--g~E~LAr~----------   89 (225)
T COG1842          22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA--GNEDLARE----------   89 (225)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHH----------
Confidence            4455522  666666667667776666666666666666666665555655555544431  12333333          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH  422 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~  422 (517)
                          +-.++..++..+..++.++..+.+.+.+++.....|..++..++.+..
T Consensus        90 ----al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~  137 (225)
T COG1842          90 ----ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE  137 (225)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                344455556666666666666666666666666666666665555444

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=94.00  E-value=8.1  Score=41.74  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             cHHHHHHHHHHHhhhHHHHhhc--CcH-H----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        272 SLEFRKFACVVRDSKRDERKKL--ADE-E----AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN  344 (517)
Q Consensus       272 e~elr~rlk~l~e~~~k~rqkl--ad~-E----al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN  344 (517)
                      .++++.+++..+.....++...  .+. .    ..+....+..++...+.+....++....+..+.+.-..+.-....-+
T Consensus       204 l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~  283 (458)
T COG3206         204 LEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLE  283 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhc
Confidence            3478888888888877776664  231 1    12555566666666677777777776666666666654444444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10797        345 SRLLQQLREKDDANFK  360 (517)
Q Consensus       345 qrklqqL~EkED~n~K  360 (517)
                      ..-+++|+++...+..
T Consensus       284 s~~i~~Lr~~~~~~~~  299 (458)
T COG3206         284 SPTIQDLRQQYAQVRQ  299 (458)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            4456666666554433

>KOG0946|consensus

Probab=93.99  E-value=7.3  Score=45.81  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEME  331 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIE  331 (517)
                      |..+..+++.|++.+..++.+.+.|..|+.
T Consensus       666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq  695 (970)
T KOG0946|consen  666 IRELDYQIENLKQMEKELQVENEELEEEVQ  695 (970)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555554444444444444433

>KOG0962|consensus

Probab=93.99  E-value=21  Score=44.10  Aligned_cols=41  Identities=24%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             HHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797        253 KSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKL  293 (517)
Q Consensus       253 ~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl  293 (517)
                      +..++...+ .|.+.+.+++..+++.+.+.+.++....++..
T Consensus       801 ~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~  842 (1294)
T KOG0962|consen  801 EKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEI  842 (1294)
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555 66667888888888888888877777766654

>KOG0962|consensus

Probab=93.99  E-value=15  Score=45.24  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQ-------NSRLLQQLREKDDANFKL  361 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQ-------NqrklqqL~EkED~n~KL  361 (517)
                      .+.++++..+|+++.+|+....       ...+...-+..+++....+|+++..+       +++++.++-++.+.....
T Consensus       874 ~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~  953 (1294)
T KOG0962|consen  874 ERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQI  953 (1294)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444666677777766666544       22333344445555566666665444       566677777877777776


Q ss_pred             HHHhhhhhhhHHH
Q psy10797        362 MTERIKSNQLHKL  374 (517)
Q Consensus       362 ~aEK~KAdQKyfa  374 (517)
                      +.......|..|.
T Consensus       954 ~~~~~~~~~~~~~  966 (1294)
T KOG0962|consen  954 YKLNECFEQYGFD  966 (1294)
T ss_pred             HHhHHHHHHHhhh
Confidence            6666555554443

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.89  E-value=4.9  Score=41.50  Aligned_cols=35  Identities=14%  Similarity=0.044  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797        356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALS  390 (517)
Q Consensus       356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk  390 (517)
                      ++..+|...++-+.+.|..+..+.+..+.+++.++
T Consensus       138 ~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~  172 (346)
T PRK10476        138 ERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQAL  172 (346)
T ss_pred             HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555565655555554444444444333

>PRK10698 phage shock protein PspA; Provisional

Probab=93.82  E-value=7.8  Score=38.63  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             cCcHHH-H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        293 LADEEA-M-RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       293 lad~Ea-l-~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      ..||+. + +-|...+.++.+++..++..-.+...+-.+++.....-++...++..-|.  ...||.......+|....+
T Consensus        22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~   99 (222)
T PRK10698         22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTD   99 (222)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence            457773 2 66777777888888887777777677777777777766666666665554  3456655555566666655


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      +...+..+.+.....+..|+.++.+....|.+.+.+...|..+.
T Consensus       100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~  143 (222)
T PRK10698        100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH  143 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555554444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.73  E-value=1.3  Score=46.24  Aligned_cols=41  Identities=20%  Similarity=0.204  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        353 EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       353 EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      +.++...+|..|.....+....+.++.+.+++|+..++.+.
T Consensus        47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~   87 (314)
T PF04111_consen   47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL   87 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444555555544444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.67  E-value=5.1  Score=40.51  Aligned_cols=90  Identities=21%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR  352 (517)
Q Consensus       273 ~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~  352 (517)
                      .+|+.||..+++..++.+..+  .+..+++..|+.+...++..-..+++....+..++..|...-.+..+...++-.++.
T Consensus         8 ~Ele~rL~q~eee~~~a~~~L--~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~   85 (246)
T PF00769_consen    8 QELEERLRQMEEEMRRAQEAL--EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777766555  444455555555555555544445555555555666666655555555566666666


Q ss_pred             HHHHHHHHHHHH
Q psy10797        353 EKDDANFKLMTE  364 (517)
Q Consensus       353 EkED~n~KL~aE  364 (517)
                      +.+..+.+|..+
T Consensus        86 e~~~~i~~l~ee   97 (246)
T PF00769_consen   86 EAEAEIARLEEE   97 (246)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=93.66  E-value=6.5  Score=41.90  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQ-KQVATHKQEEEALLNEMEVTGQ  335 (517)
Q Consensus       300 ~rL~~lE~EieeLr-~kL~s~eqe~eALlsEIEsIgq  335 (517)
                      ..|..++.++.-|. ..|+..++....|..|++.+.+
T Consensus       246 ~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~  282 (388)
T PF04912_consen  246 PALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE  282 (388)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444442 2455666666666666665543

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.60  E-value=5.6  Score=46.16  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        407 ERFLQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       407 Er~L~~kLs~lEKEL~~lkqal  428 (517)
                      |+.+.++|..++.++..++..+
T Consensus       634 Er~~~~EL~~~~~~l~~l~~si  655 (717)
T PF10168_consen  634 EREFKKELERMKDQLQDLKASI  655 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444433333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.55  E-value=9  Score=40.06  Aligned_cols=97  Identities=23%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q psy10797        294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED--------------MQEQNSRLLQQLREKDDANF  359 (517)
Q Consensus       294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd--------------mQeQNqrklqqL~EkED~n~  359 (517)
                      .+.-|+++|..+|.+++.|++.-....=.       ||++++|+++              +...|+.++....+.|....
T Consensus        12 L~~~aLqKIqelE~QldkLkKE~qQrQfQ-------leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq   84 (307)
T PF10481_consen   12 LPTRALQKIQELEQQLDKLKKERQQRQFQ-------LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ   84 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            45667788888888887777654433322       3344444433              34444555544444444444


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       360 KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~  411 (517)
                      ||..|              ...-+.++.-|..|+......|.+|+..-+.+.
T Consensus        85 Klshd--------------lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K  122 (307)
T PF10481_consen   85 KLSHD--------------LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK  122 (307)
T ss_pred             HhhHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333              333344444455555555555555544444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0288|consensus

Probab=93.53  E-value=3.1  Score=45.47  Aligned_cols=57  Identities=18%  Similarity=0.275  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE  353 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E  353 (517)
                      |+..++++-|+...++..++..+..+.+++.+-+...+.+..++|+.|..+..+...
T Consensus        17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~   73 (459)
T KOG0288|consen   17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR   73 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666777777777888888888888887877788888888877777655544

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.53  E-value=11  Score=39.43  Aligned_cols=18  Identities=22%  Similarity=0.392  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        321 QEEEALLNEMEVTGQAFE  338 (517)
Q Consensus       321 qe~eALlsEIEsIgqAyE  338 (517)
                      ++++.|-.-+..+..=|+
T Consensus       135 ~eN~~L~eKlK~l~eQye  152 (309)
T PF09728_consen  135 EENEELREKLKSLIEQYE  152 (309)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444444

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=93.51  E-value=13  Score=40.18  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             hhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhc
Q psy10797        245 SAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKL  293 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl  293 (517)
                      ...++...+.....+..-.+..+.-.++....+...+++..+...+.+.
T Consensus       207 lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~  255 (458)
T COG3206         207 LRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARL  255 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555522332223444455666777777766655554

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=93.50  E-value=5.3  Score=46.48  Aligned_cols=12  Identities=25%  Similarity=0.274  Sum_probs=6.7

Q ss_pred             HHHHHHHhHHHH
Q psy10797         88 LIAQLRRKTERM   99 (517)
Q Consensus        88 ~~~~~~~~~~~~   99 (517)
                      =|..|+.|.+++
T Consensus       127 ei~~Le~k~~~~  138 (762)
T PLN03229        127 QIISLESKYQQA  138 (762)
T ss_pred             HHHHHHHHHHHH
Confidence            355666665554

>KOG0018|consensus

Probab=93.50  E-value=11  Score=45.53  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE  338 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE  338 (517)
                      ........++++|+.++.+.+...+++..||+...|-|.
T Consensus       317 k~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg  355 (1141)
T KOG0018|consen  317 KDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERG  355 (1141)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344556678889999999999999999999999999665

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=93.47  E-value=3  Score=45.79  Aligned_cols=107  Identities=11%  Similarity=-0.030  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhhhHHHHhhc--CcHHHH-----HHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKL--ADEEAM-----RKIKQLEDQTHQLQKQVATHKQ-------EEEALLNEMEVTGQAFED  339 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkl--ad~Eal-----~rL~~lE~EieeLr~kL~s~eq-------e~eALlsEIEsIgqAyEd  339 (517)
                      ..++|++++...+..+|.+.  -||+..     .-|..||.|+.+++.+|+.+..       +...|..+|..|++-.++
T Consensus       253 ~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~  332 (434)
T PRK15178        253 SAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGE  332 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence            66778888888888888775  377755     7788999999988888886643       345566666666655554


Q ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797        340 MQEQNS------RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLRE  384 (517)
Q Consensus       340 mQeQNq------rklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~  384 (517)
                      .+....      .+-..+.+.    ..|..|.-=|++.|.+++...|.-..
T Consensus       333 er~kl~~~~g~~~la~~laeY----e~L~le~efAe~~y~sAlaaLE~AR~  379 (434)
T PRK15178        333 QRNRLSNKLGSQGSSESLSLF----EDLRLQSEIAKARWESALQTLQQGKL  379 (434)
T ss_pred             HHHHhhcCCCCCchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333321      111122222    34556666677777776665544333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.45  E-value=7  Score=36.87  Aligned_cols=42  Identities=17%  Similarity=0.228  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ  341 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQ  341 (517)
                      .+|..+|++++..+........+.+.-..||+++..-...|.
T Consensus        24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt   65 (140)
T PF10473_consen   24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT   65 (140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444444444444444444444443333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR00634 recN DNA repair protein RecN

Probab=93.41  E-value=16  Score=40.84  Aligned_cols=11  Identities=27%  Similarity=0.305  Sum_probs=5.4

Q ss_pred             cCccccccccc
Q psy10797         67 NGQNTAKRSNH   77 (517)
Q Consensus        67 ~~~~~~~~~~~   77 (517)
                      -|.|.+..|+-
T Consensus        28 tG~nGaGKS~l   38 (563)
T TIGR00634        28 TGETGAGKSMI   38 (563)
T ss_pred             ECCCCCCHHHH
Confidence            35555555543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG1003|consensus

Probab=93.40  E-value=9.3  Score=38.17  Aligned_cols=71  Identities=17%  Similarity=0.381  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIK  367 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~K  367 (517)
                      +++.++|...|.++++...+.+.-+....-|..|+-.++...+.+...+.+..++.-..+.. +|..++|+|
T Consensus        84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~-ik~ltdKLk  154 (205)
T KOG1003|consen   84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEE-LKELTDKLK  154 (205)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHh
Confidence            45667777778887777777777777777777777777777777776666666655544443 344455554

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.36  E-value=12  Score=39.33  Aligned_cols=39  Identities=21%  Similarity=0.153  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        411 QTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL  449 (517)
Q Consensus       411 ~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qL  449 (517)
                      +.++.+++.++..++..++....+..+......+++..+
T Consensus       224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555554444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF13514 AAA_27: AAA domain

Probab=93.35  E-value=24  Score=42.68  Aligned_cols=47  Identities=9%  Similarity=-0.024  Sum_probs=22.2

Q ss_pred             hhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHh
Q psy10797        245 SAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERK  291 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rq  291 (517)
                      ..+++..=-..|..=++ .|.....+..-.+++++++++......++.
T Consensus       131 ~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~  178 (1111)
T PF13514_consen  131 VLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQE  178 (1111)
T ss_pred             HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            33333333333333333 455544455555566666665555555443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=93.34  E-value=12  Score=39.31  Aligned_cols=116  Identities=23%  Similarity=0.314  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      ++|..++.++++-+..++.. .....|.+|++.+-..-++..+-...+.++..+.-+.++++              -++.
T Consensus       138 q~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~--------------~~~~  202 (294)
T COG1340         138 QKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKL--------------FEEA  202 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence            55555555555554444332 34455677777777777777777777777766665555554              3445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      |.+..+...+...+.+....|..+.+.-+.++..+.++++.+..++.....
T Consensus       203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~  253 (294)
T COG1340         203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKA  253 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666666667777777777777777888888888888777655433

>KOG0249|consensus

Probab=93.31  E-value=5.7  Score=46.09  Aligned_cols=91  Identities=19%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH  397 (517)
Q Consensus       318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~  397 (517)
                      .++.+.+-++.|+...-+--+--.+-|.+++.+.-|+.+...   -|++.|-++...+-++.+.+.+++.+++.--++..
T Consensus       167 kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhl---kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~  243 (916)
T KOG0249|consen  167 KLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHL---KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR  243 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444433333344444444443333222   25555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHH
Q psy10797        398 TAIRKLEEKERFLQ  411 (517)
Q Consensus       398 e~I~kLeE~Er~L~  411 (517)
                      .-+++|.-.+.+|.
T Consensus       244 ~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  244 TDIEDLRGELDQLR  257 (916)
T ss_pred             hhHHHHHHHHHHHH
Confidence            55555544444444

>TIGR02977 phageshock_pspA phage shock protein A

Probab=93.26  E-value=9.2  Score=37.71  Aligned_cols=120  Identities=18%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             cCcHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        293 LADEEAM--RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       293 lad~Eal--~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      ..||+..  +-|...+.++.+++..++..-.....+..+++.+...-++...++..-|.  ...||.......+|....+
T Consensus        22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~--~G~EdLAr~Al~~k~~~~~   99 (219)
T TIGR02977        22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS--KGREDLARAALIEKQKAQE   99 (219)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence            4567722  66677777777888888777777777777777777777776666666554  3456655555556655555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      ....+....+.+...+..|+.++......|..++-+...|..+.
T Consensus       100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~  143 (219)
T TIGR02977       100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH  143 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666666666655555555444433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1853|consensus

Probab=93.21  E-value=12  Score=38.90  Aligned_cols=70  Identities=16%  Similarity=0.262  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       326 LlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      |-++++.+++--+++++.|+++-.++...-|+          .+-.|-.--+.-..|+.++.++.++-+.+.+.|.+|+.
T Consensus        50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek----------~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ  119 (333)
T KOG1853|consen   50 LESQLDQLETRNRDLETRNQRLTTEQERNKEK----------QEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ  119 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777777665443322221          11122222344567888888888888888888888776

>PF13166 AAA_13: AAA domain

Probab=93.19  E-value=13  Score=42.08  Aligned_cols=19  Identities=21%  Similarity=0.443  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy10797        300 RKIKQLEDQTHQLQKQVAT  318 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s  318 (517)
                      ..+..+...++.++..|++
T Consensus       329 ~~~~~l~~~l~~l~~~L~~  347 (712)
T PF13166_consen  329 SAIEALKEELEELKKALEK  347 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555444

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=93.15  E-value=7.6  Score=36.42  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        376 REEKDTLREQVQALSLQIEAMHTAIRKLE  404 (517)
Q Consensus       376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLe  404 (517)
                      ....+.+..+.+.++..+.+......+++
T Consensus       109 l~~R~~~~~~~~~~~~~l~~k~~~~~kl~  137 (218)
T cd07596         109 LDDRADALLTLQSLKKDLASKKAQLEKLK  137 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444444444444444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid

Probab=93.15  E-value=4.7  Score=44.87  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=81.6

Q ss_pred             hHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797        255 RWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT  333 (517)
Q Consensus       255 ~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI  333 (517)
                      .|......||+  .-.+|-.+..+|+++++..+.++-+.. ++...++.   -.+++++++-+.......+.=.+|++.+
T Consensus        71 VlG~~d~~pDP--LsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~---g~~L~~v~~~~~~~~~~~~~e~~q~~~L  145 (508)
T PF00901_consen   71 VLGTGDEPPDP--LSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKF---GNDLEKVYKFMKGQEKVEEEEENQIEIL  145 (508)
T ss_pred             hccCCCCCCCC--CCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHH
Confidence            44445556666  558888999999999998887655442 33333333   3445555555555555555556799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797        334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE  377 (517)
Q Consensus       334 gqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr  377 (517)
                      ++|.+.+.+....--.+|..+-++..|=..+|..-..+.=..++
T Consensus       146 ekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr  189 (508)
T PF00901_consen  146 EKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYR  189 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999888888888888888888877777766655544444

Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.13  E-value=0.026  Score=65.69  Aligned_cols=171  Identities=16%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             hhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH-------
Q psy10797        245 SAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVA-------  317 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~-------  317 (517)
                      .++.++++...|+.-++  -.++.-...-+|+.+|.++++.+..+|.-  ..-+...-+.+..++++|+..|+       
T Consensus        16 ke~El~~~~~~~e~e~~--~~~~l~k~~kelq~~i~el~eeLe~Er~~--R~kaek~r~dL~~ELe~l~~~Lee~~~~t~   91 (859)
T PF01576_consen   16 KEEELSQLNSKLEDEQA--LRAQLQKKIKELQARIEELEEELESERQA--RAKAEKQRRDLSEELEELKERLEEAGGATQ   91 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence            34444444444444333  11222234447777788888777665542  22223333345555555555554       


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797        318 -------THKQEEEALLNEMEVTGQAFEDMQEQN-SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL  389 (517)
Q Consensus       318 -------s~eqe~eALlsEIEsIgqAyEdmQeQN-qrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L  389 (517)
                             ..+.+...|-.+|+......+...... .+--..+.++.+.+-.+.-.|.+++.--..+..+.+.+..++..+
T Consensus        92 aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~  171 (859)
T PF01576_consen   92 AQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSL  171 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                   233455555556655555444433222 222333344444444443333443333334444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        390 SLQIEAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       390 k~QlekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      ..........+.+++..-..++.++...++
T Consensus       172 ~k~k~~~Ek~~K~lE~qL~El~~klee~er  201 (859)
T PF01576_consen  172 QKAKQEAEKKRKQLEAQLNELQAKLEESER  201 (859)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Confidence            333322223333344433333333333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK10869 recombination and repair protein; Provisional

Probab=93.12  E-value=13  Score=41.72  Aligned_cols=10  Identities=0%  Similarity=0.016  Sum_probs=3.7

Q ss_pred             HHHHHhHhhh
Q psy10797        250 SFYKSRWFDF  259 (517)
Q Consensus       250 ~al~~~l~~~  259 (517)
                      .+++..+..+
T Consensus       157 ~~~~~~y~~~  166 (553)
T PRK10869        157 QEMRAAYQLW  166 (553)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=93.09  E-value=12  Score=38.61  Aligned_cols=117  Identities=21%  Similarity=0.218  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT-ERIKSNQLHKLAREEKDTLREQV  386 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a-EK~KAdQKyfaamreKdaLe~Ev  386 (517)
                      .+++|+.-.+.+.+.+..|..+|.+++..   .......+|++..-.-..+..|-. =..+-.+....+.+-++..+..+
T Consensus         7 sl~el~~h~~~L~~~N~~L~~~IqdtE~s---t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l   83 (258)
T PF15397_consen    7 SLQELKKHEDFLTKLNKELIKEIQDTEDS---TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKL   83 (258)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhHHhh---HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHH
Confidence            44556666666666666666666666532   222233333332222111111100 00001122223334444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q psy10797        387 QALSLQIEAMHTAIRKLEEKERFLQT-----------VLTNAEKELHLRNQA  427 (517)
Q Consensus       387 k~Lk~QlekQ~e~I~kLeE~Er~L~~-----------kLs~lEKEL~~lkqa  427 (517)
                      ..|+.|++..+..|.+..+.-+.|..           +++++.++|..++..
T Consensus        84 ~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~  135 (258)
T PF15397_consen   84 SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS  135 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444333331           566666666555433

>KOG4593|consensus

Probab=93.05  E-value=21  Score=41.36  Aligned_cols=47  Identities=11%  Similarity=0.116  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797        319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER  365 (517)
Q Consensus       319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK  365 (517)
                      .+.+...+-+++....+-|+.-..|...+.+++.++++....++.++
T Consensus       177 ~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~  223 (716)
T KOG4593|consen  177 QEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHE  223 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566667778888888888888888888888888888777665544

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.05  E-value=0.027  Score=63.95  Aligned_cols=80  Identities=21%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERF---LQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK  446 (517)
Q Consensus       370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~---L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk  446 (517)
                      ++|..-.++.+.+..+++.|+.++...-+.+..|+|.-+.   +..++...++++..+++.+....++...+......|+
T Consensus       318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~  397 (713)
T PF05622_consen  318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE  397 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666777778888888887777777777777775433   4456666666666665555444433333333333344


Q ss_pred             HHH
Q psy10797        447 LHL  449 (517)
Q Consensus       447 ~qL  449 (517)
                      .++
T Consensus       398 ek~  400 (713)
T PF05622_consen  398 EKL  400 (713)
T ss_dssp             ---
T ss_pred             HHH
Confidence            333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0825|consensus

Probab=93.03  E-value=0.03  Score=64.21  Aligned_cols=43  Identities=7%  Similarity=0.004  Sum_probs=33.5

Q ss_pred             ccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        469 SAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       469 kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      +|+.|...+.+        |+|.||..||..|...- -.||.|++  +.-+|..
T Consensus       125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~v~V~e  177 (1134)
T KOG0825|consen  125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGEVKVLE  177 (1134)
T ss_pred             hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhheeeeec
Confidence            57776655544        99999999999998764 49999999  6666653

>KOG0243|consensus

Probab=93.00  E-value=9.6  Score=45.88  Aligned_cols=127  Identities=18%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhh
Q psy10797        303 KQLEDQTHQLQKQVATHKQEEEALLNEMEV--TGQAFEDMQEQNSRLLQQLREKDDAN--------------FKLMTERI  366 (517)
Q Consensus       303 ~~lE~EieeLr~kL~s~eqe~eALlsEIEs--IgqAyEdmQeQNqrklqqL~EkED~n--------------~KL~aEK~  366 (517)
                      +.+-.||++|+..|.+.++-+.-|++|=--  .+.-++.+.+|..++-.++.++++.+              ..|..++-
T Consensus       407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~  486 (1041)
T KOG0243|consen  407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE  486 (1041)
T ss_pred             HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            456678888888877655333332222111  11122223333333322332222222              24444444


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        367 KSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD  429 (517)
Q Consensus       367 KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale  429 (517)
                      |-.-+...--.+...++.+++.++.++.+-..+|++++..|..+..+...+...+...++.+.
T Consensus       487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s  549 (1041)
T KOG0243|consen  487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS  549 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444556666666667777776667777777777776666555555555554444444

>KOG3039|consensus

Probab=92.92  E-value=0.067  Score=54.58  Aligned_cols=47  Identities=13%  Similarity=0.096  Sum_probs=39.3

Q ss_pred             cccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEe
Q psy10797        466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRL  513 (517)
Q Consensus       466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rI  513 (517)
                      +.|.|++|++..-|         ||||||.+|++.-|... --||.|+.  ...|+..+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence            56999999998777         99999999999998764 48999999  66666543

>KOG0243|consensus

Probab=92.92  E-value=17  Score=44.00  Aligned_cols=13  Identities=38%  Similarity=0.705  Sum_probs=9.4

Q ss_pred             CCCCCCCCcccce
Q psy10797        108 LDETTPWDSSFGI  120 (517)
Q Consensus       108 ~~~~~~~~~~~~~  120 (517)
                      .|-|.++|-.||-
T Consensus        93 ~~k~ftFDkVFGp  105 (1041)
T KOG0243|consen   93 IDKTFTFDKVFGP  105 (1041)
T ss_pred             ccceeecceeeCc
Confidence            5667788877773

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.81  E-value=23  Score=41.15  Aligned_cols=115  Identities=23%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      --|...|.++.+|...|......+.-+..-++.+-.-++.-.-.|..+...+....-.+..+..|..       ..--+.
T Consensus       443 ~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~-------~~~~el  515 (786)
T PF05483_consen  443 GLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETS-------DMALEL  515 (786)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhH
Confidence            4455666677777777776666666666666666655555444444444333333322222222211       111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL  421 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL  421 (517)
                      -.+...+..-+.+.++....|..|++.+..|+..|..+..++
T Consensus       516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel  557 (786)
T PF05483_consen  516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEEL  557 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233444444555555666666666666666665555444443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0288|consensus

Probab=92.78  E-value=6.8  Score=42.91  Aligned_cols=70  Identities=11%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN  369 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAd  369 (517)
                      ++..+.++.+.+|+.+++..++..+.+.++...+..+++......+.+=..|.++.+.|..+..|++.+.
T Consensus         6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~   75 (459)
T KOG0288|consen    6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE   75 (459)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677777777777777777777777777777777777777777777777777777777777643

>PF15294 Leu_zip: Leucine zipper

Probab=92.77  E-value=14  Score=38.54  Aligned_cols=64  Identities=9%  Similarity=0.155  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhhhHHH------HhhcCcHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDE------RKKLADEEAMRKIKQLEDQTH-QLQKQVATHKQEEEALLNEMEVTGQAF  337 (517)
Q Consensus       274 elr~rlk~l~e~~~k~------rqklad~Eal~rL~~lE~Eie-eLr~kL~s~eqe~eALlsEIEsIgqAy  337 (517)
                      ...++|+++..-...-      .-.+.-+||.+.+..++.-+. +++..+.+..-.+-.|+..|=..++-|
T Consensus         5 kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~   75 (278)
T PF15294_consen    5 KREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKW   75 (278)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Confidence            4566777775443331      112356677777777776664 555555555555555555544443333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.64  E-value=2.1  Score=41.38  Aligned_cols=15  Identities=13%  Similarity=0.222  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhhHH
Q psy10797        274 EFRKFACVVRDSKRD  288 (517)
Q Consensus       274 elr~rlk~l~e~~~k  288 (517)
                      ++.++|..++....+
T Consensus        92 el~~~L~~~~~~l~~  106 (194)
T PF08614_consen   92 ELAQQLVELNDELQE  106 (194)
T ss_dssp             ---------------
T ss_pred             cccccccccccccch
Confidence            344444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1265|consensus

Probab=92.63  E-value=14  Score=44.19  Aligned_cols=84  Identities=13%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy10797        330 MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLH-KLAREEKDTLREQVQALSLQI-EAMHTAIRKLEEKE  407 (517)
Q Consensus       330 IEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy-faamreKdaLe~Evk~Lk~Ql-ekQ~e~I~kLeE~E  407 (517)
                      ++.+.+...+.|+.--+.|...-|+|.+-.|-..+|...+... .+-+++|+.++.+++.++..+ ...-+.+.+|++.-
T Consensus      1065 ~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~ 1144 (1189)
T KOG1265|consen 1065 ISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQ 1144 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444455555555555444444433333333 677888899999988888765 55566777777754


Q ss_pred             HHHHHH
Q psy10797        408 RFLQTV  413 (517)
Q Consensus       408 r~L~~k  413 (517)
                      ..-+.+
T Consensus      1145 ~k~~e~ 1150 (1189)
T KOG1265|consen 1145 SKRQEQ 1150 (1189)
T ss_pred             HHHHHH
Confidence            444433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.51  E-value=1.9  Score=37.18  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM  362 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~  362 (517)
                      ...||..+-..|.-|+..++.+++.+..|..|++.+...-+++...|.++-++...+.+++..|.
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888889999999999999999999999999999999999999999999999999887764

>KOG1937|consensus

Probab=92.38  E-value=21  Score=39.66  Aligned_cols=83  Identities=24%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy10797        318 THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR-EQVQALSLQIEAM  396 (517)
Q Consensus       318 s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe-~Evk~Lk~QlekQ  396 (517)
                      ++......+.+-|..+.+-|++...-+..+.-++.+.-+.                   ++.+..+ .+++.+...+.+-
T Consensus       297 KL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~-------------------~e~e~~e~~~IqeleqdL~a~  357 (521)
T KOG1937|consen  297 KLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKN-------------------LETEDEEIRRIQELEQDLEAV  357 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------------------ccchHHHHHHHHHHHHHHHHH
Confidence            3334444444556666777777666555444444432210                   0111111 3444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        397 HTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       397 ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      .+.|.+-+|.-..|.+.++.+-+
T Consensus       358 ~eei~~~eel~~~Lrsele~lp~  380 (521)
T KOG1937|consen  358 DEEIESNEELAEKLRSELEKLPD  380 (521)
T ss_pred             HHHHHhhHHHHHHHHHHHhcCCc
Confidence            55666656655555555544433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.32  E-value=6.6  Score=39.68  Aligned_cols=20  Identities=25%  Similarity=0.625  Sum_probs=13.6

Q ss_pred             chhhHHHHHhhhccCCCCCCC
Q psy10797        485 FLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       485 C~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |..|-+. |..----||.|..
T Consensus       197 C~sC~qq-IHRNAPiCPlCK~  216 (230)
T PF10146_consen  197 CQSCHQQ-IHRNAPICPLCKA  216 (230)
T ss_pred             hHhHHHH-HhcCCCCCccccc
Confidence            7788665 4422348999988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1813|consensus

Probab=92.30  E-value=0.045  Score=56.81  Aligned_cols=39  Identities=15%  Similarity=0.139  Sum_probs=33.8

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      -.|+|.+|+..+.+     |+|.||..|--..+. +.-+|+.|++
T Consensus       240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~  283 (313)
T KOG1813|consen  240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQ  283 (313)
T ss_pred             CCccccccccccccchhhcCCceeehhhhccccc-cCCcceeccc
Confidence            34899999998877     999999999988874 5679999998

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.26  E-value=14  Score=39.27  Aligned_cols=7  Identities=43%  Similarity=0.064  Sum_probs=2.5

Q ss_pred             ecccCcc
Q psy10797        231 IFSLTST  237 (517)
Q Consensus       231 i~~l~~~  237 (517)
                      |.+..+.
T Consensus        61 v~a~~~G   67 (421)
T TIGR03794        61 IQSPGSG   67 (421)
T ss_pred             EECCCCe
Confidence            3333333

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>KOG4360|consensus

Probab=92.23  E-value=6.9  Score=43.90  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE  407 (517)
Q Consensus       329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~E  407 (517)
                      ||+...+-.-..++.|.+++.+|.+++.++.-+..||--.++..-+....-+.+.+|.+.++.+   ..+.++.+.|.+
T Consensus       220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk---yAE~m~~~~Eae  295 (596)
T KOG4360|consen  220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK---YAECMQMLHEAE  295 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            3444444444566778899999999999999999999888888887777777777877766644   444444444443

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=92.09  E-value=13  Score=39.95  Aligned_cols=118  Identities=17%  Similarity=0.224  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      +||...+....+|+.++....++......+|+.+.+|..+...-.  ||.+ +.++.+..+=-.|..+ |.-++.+-.  
T Consensus       251 ~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~l--kvaq-TRL~~R~~RP~vElcr-D~~q~~L~~--  324 (384)
T PF03148_consen  251 KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPL--KVAQ-TRLENRTQRPNVELCR-DPPQYGLIE--  324 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHH-HHHhhHhcCCchHHHH-hhHHHHHHH--
Confidence            677777777777777777777777777788888888877743221  2222 2344444444445444 455555444  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal  428 (517)
                           |++.|+..+.+..+.+.+.+...+.|......+|+++..-..++
T Consensus       325 -----Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL  368 (384)
T PF03148_consen  325 -----EVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL  368 (384)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 55555555665555566555555555556666777766555554

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>TIGR00618 sbcc exonuclease SbcC

Probab=92.02  E-value=33  Score=41.10  Aligned_cols=11  Identities=9%  Similarity=-0.031  Sum_probs=7.4

Q ss_pred             ccccccccccc
Q psy10797        466 REFSAKFVNFR  476 (517)
Q Consensus       466 ~e~kC~iC~~r  476 (517)
                      ..-.||+|...
T Consensus       500 ~~~~cplcgs~  510 (1042)
T TIGR00618       500 QEEPCPLCGSC  510 (1042)
T ss_pred             CCCCCCCCCCC
Confidence            34578888863

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.91  E-value=16  Score=37.08  Aligned_cols=40  Identities=15%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA  336 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA  336 (517)
                      |...||...+++....+..|...+.....|-.+......+
T Consensus         9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee   48 (246)
T PF00769_consen    9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE   48 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666665555555544444444444333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=91.56  E-value=27  Score=39.16  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTA  399 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~  399 (517)
                      ..+..+.+..+.|++.|+.+.+.....
T Consensus       333 ~kl~~eie~kEeei~~L~~~~d~L~~q  359 (622)
T COG5185         333 EKLKSEIELKEEEIKALQSNIDELHKQ  359 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            333444444445555555444443333

>KOG0993|consensus

Probab=91.52  E-value=26  Score=38.75  Aligned_cols=53  Identities=23%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEM-EVTGQAFEDMQEQNSRLLQQLR  352 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEI-EsIgqAyEdmQeQNqrklqqL~  352 (517)
                      .-+....+++..++..+-...+..+-|+.++ ..|++|-.+.+.|+.+++.--.
T Consensus       320 ~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~lv~a~e  373 (542)
T KOG0993|consen  320 HTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMARLVVASE  373 (542)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555655555455555555555 3578999999999999886443

>KOG0297|consensus

Probab=91.46  E-value=0.081  Score=56.53  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..+.|++|..-.++      |||.||..|+..++.. +-+||.|..
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~   64 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQ   64 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCccccc
Confidence            56899998875555      9999999999999876 789999976

>KOG3564|consensus

Probab=91.35  E-value=2.3  Score=47.23  Aligned_cols=83  Identities=22%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK  406 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~  406 (517)
                      ..|+..+-+-|||..+.-++.-.++.+.+|...|.-.++.--|=|.|.+++..|+.-++.+.++.-.++...+|..++|.
T Consensus        27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~  106 (604)
T KOG3564|consen   27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM  106 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             HHH
Q psy10797        407 ERF  409 (517)
Q Consensus       407 Er~  409 (517)
                      -+.
T Consensus       107 l~~  109 (604)
T KOG3564|consen  107 LKC  109 (604)
T ss_pred             Hhc
Confidence            543

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.28  E-value=7.9  Score=39.15  Aligned_cols=49  Identities=20%  Similarity=0.074  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797        329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE  377 (517)
Q Consensus       329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr  377 (517)
                      |++.+-+.+..--++.+.--+|+..+|+-+..+-.|+.+..+....+++
T Consensus        40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e   88 (230)
T PF10146_consen   40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE   88 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333344444444444444444444443333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1571|consensus

Probab=91.26  E-value=0.045  Score=57.93  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLY  514 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy  514 (517)
                      ..-.|.||.+.++|     |||+-|  |..-+-..  .+||.|+....-++++|
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l--~~CPvCR~rI~~~~k~y  353 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL--PQCPVCRQRIRLVRKRY  353 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEE--chHHHhhC--CCCchhHHHHHHHHHHh
Confidence            34689999999999     999988  88887655  56999998444444444

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=91.26  E-value=17  Score=36.37  Aligned_cols=85  Identities=19%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        326 LLNEMEVTGQAFEDMQEQNSRLLQQLRE--KDDANFKLMTERIK--SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR  401 (517)
Q Consensus       326 LlsEIEsIgqAyEdmQeQNqrklqqL~E--kED~n~KL~aEK~K--AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~  401 (517)
                      ...+|..+-..++.|..+-..++.++.+  .+|-+.+++.+-.+  ..+--....++..-...-...+...+.+|..+|.
T Consensus       142 ~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~  221 (296)
T PF13949_consen  142 VIRQLRELLNKLEELKKEREELLEQLKEKLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQ  221 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666677777777777777765  23444555553332  1122222233333455556667777888888888


Q ss_pred             HHHHHHHHH
Q psy10797        402 KLEEKERFL  410 (517)
Q Consensus       402 kLeE~Er~L  410 (517)
                      .+.+....+
T Consensus       222 ~i~~~~~~~  230 (296)
T PF13949_consen  222 EIQEANEEF  230 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888866544

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=91.24  E-value=11  Score=41.11  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLR--------EKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA--M  396 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~--------EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek--Q  396 (517)
                      ..|+++|-.+.+.|-..-..|+..++        ..--.|..|..-|.-+.|-..+..+.|+...+|.+.-.+++.+  .
T Consensus       262 ~~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~  341 (442)
T PF06637_consen  262 GPELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECA  341 (442)
T ss_pred             cchHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999876655555555443        3444566777778888888888888888888776655544322  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        397 HTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       397 ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                      ...---|+|+ .+|+++-.+++|+|...+..++..+
T Consensus       342 rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~  376 (442)
T PF06637_consen  342 RQTQLALEEK-AALRKERDSLAKELEEKKRELEQLK  376 (442)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222235555 5677777777777766665555443

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.18  E-value=7.8  Score=38.74  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=39.5

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        359 FKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRN  425 (517)
Q Consensus       359 ~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk  425 (517)
                      .+......++.++....-.+++.+..+.+.++.+++.....+.+++..-.....++..+++++....
T Consensus        31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666666677777777777666666666666666655555555555555554443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.13  E-value=3.4  Score=39.88  Aligned_cols=27  Identities=41%  Similarity=0.701  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQIEAMHTAIRKLEEKE  407 (517)
Q Consensus       381 aLe~Evk~Lk~QlekQ~e~I~kLeE~E  407 (517)
                      .+..|+.+|+.+++...+.+.++++..
T Consensus       148 ~l~DE~~~L~l~~~~~e~k~~~l~~En  174 (194)
T PF08614_consen  148 ILQDELQALQLQLNMLEEKLRKLEEEN  174 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455554444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=91.12  E-value=13  Score=38.91  Aligned_cols=16  Identities=6%  Similarity=-0.058  Sum_probs=7.1

Q ss_pred             eecchhhhHHHHHHhH
Q psy10797        241 SICTSAFQMSFYKSRW  256 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l  256 (517)
                      +...|.+=+..+-..+
T Consensus        71 e~L~Sr~~~~~v~~~l   86 (362)
T TIGR01010        71 EYMRSRDMLAALEKEL   86 (362)
T ss_pred             HHHhhHHHHHHHHhcC
Confidence            3444444444444444

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=90.95  E-value=31  Score=38.61  Aligned_cols=14  Identities=29%  Similarity=0.494  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHH
Q psy10797        304 QLEDQTHQLQKQVA  317 (517)
Q Consensus       304 ~lE~EieeLr~kL~  317 (517)
                      -||..+++|+.+..
T Consensus       342 yLe~kvkeLQ~k~~  355 (527)
T PF15066_consen  342 YLEKKVKELQMKIT  355 (527)
T ss_pred             HHHHHHHHHHHHhh
Confidence            45566666665543

>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]

Probab=90.82  E-value=2.7  Score=44.47  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=77.6

Q ss_pred             ccccH---HHHHHHHHHHhhhHHHHhhcC--cHHHH-----HHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHH
Q psy10797        269 IYGSL---EFRKFACVVRDSKRDERKKLA--DEEAM-----RKIKQLEDQTHQLQKQVATHKQEE-------EALLNEME  331 (517)
Q Consensus       269 i~~e~---elr~rlk~l~e~~~k~rqkla--d~Eal-----~rL~~lE~EieeLr~kL~s~eqe~-------eALlsEIE  331 (517)
                      ..+|+   ..+.|++++...+.++|-+..  |++.+     .-+..+|.|+..++.+|+..+.-.       -+|..+++
T Consensus       182 r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkarie  261 (372)
T COG3524         182 RFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIE  261 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence            34454   457789999999999998874  55544     667889999999999999766433       56677777


Q ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy10797        332 VTGQAFEDMQEQNSRL-----LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ  385 (517)
Q Consensus       332 sIgqAyEdmQeQNqrk-----lqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E  385 (517)
                      +|.+-...   |-++.     =+.+.++--.-..|..|..=|.+.|-+|+.+.+....|
T Consensus       262 Slrkql~q---e~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~AAl~SlEsArie  317 (372)
T COG3524         262 SLRKQLLQ---EKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESARIE  317 (372)
T ss_pred             HHHHHHHH---HHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            66653322   22211     11333444445568889999999999999977765554

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=90.75  E-value=18  Score=35.74  Aligned_cols=71  Identities=20%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE-----QNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe-----QNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      ..|..+|..+.+|.+.++.+-..-..|-.=+..+|.++..+-.     -..+.+.++++..+++..+..+-+..|.
T Consensus        19 ~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~   94 (224)
T cd07623          19 QQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDF   94 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555554433333333333344444443322     2344555555555555555544444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=90.75  E-value=16  Score=35.17  Aligned_cols=21  Identities=33%  Similarity=0.320  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q psy10797        345 SRLLQQLREKDDANFKLMTER  365 (517)
Q Consensus       345 qrklqqL~EkED~n~KL~aEK  365 (517)
                      .+.+.++++.-+.+..+..+-
T Consensus        81 ~~~l~~l~~~~~~~~~~~~~~  101 (236)
T PF09325_consen   81 SEALSQLAEAFEKISELLEEQ  101 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444445555444444444443

This is the C-terminal dimerisation domain [].

>KOG1002|consensus

Probab=90.74  E-value=0.094  Score=58.24  Aligned_cols=40  Identities=15%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhh----hccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET----RQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t----R~RKCP~C~~  505 (517)
                      .+..|.+|.+..++     |-|.||.-||.+.+..    -+-.||+|..
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i  583 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI  583 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence            67889999998888     9999999999877753    4569999998

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.66  E-value=0.15  Score=53.44  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             cccccccccc-cc-------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        468 FSAKFVNFRR-KS-------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       468 ~kC~iC~~r~-K~-------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..|-+|..++ |+       |-|.|=-.|++.|+--=.-+||+|+.
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt  369 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRT  369 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCC
Confidence            6799999875 44       99999999999999854569999997

>KOG1785|consensus

Probab=90.63  E-value=0.091  Score=56.66  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             ccccccccccc-----cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797        469 SAKFVNFRRKS-----YFFVEFLDCLRTRYETR-QRKCPKCNA  505 (517)
Q Consensus       469 kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR-~RKCP~C~~  505 (517)
                      .|.||-++.||     |||+.|..|+-.|-... -..||-|+.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc  413 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC  413 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence            58999999999     99999999999997665 569999998

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=90.59  E-value=18  Score=35.45  Aligned_cols=45  Identities=16%  Similarity=0.147  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        388 ALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       388 ~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                      ++...+.+......+++...+....++..+++++...+.+.+..+
T Consensus       119 ~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~  163 (216)
T cd07627         119 SAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELK  163 (216)
T ss_pred             HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444433222223455556666555554444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>KOG4159|consensus

Probab=90.57  E-value=0.12  Score=55.66  Aligned_cols=39  Identities=21%  Similarity=0.403  Sum_probs=33.0

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ++|.|-||....-+     |||.||..||++.+. ..-.||.|+-
T Consensus        83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~  126 (398)
T KOG4159|consen   83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRD  126 (398)
T ss_pred             chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccc
Confidence            88999999875433     999999999999776 4569999986

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=90.56  E-value=12  Score=43.09  Aligned_cols=19  Identities=11%  Similarity=0.249  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy10797        385 QVQALSLQIEAMHTAIRKL  403 (517)
Q Consensus       385 Evk~Lk~QlekQ~e~I~kL  403 (517)
                      +++.|+++++..+..+.++
T Consensus       347 ~~~~L~~~~~~l~~~~~~~  365 (726)
T PRK09841        347 KRQTLEQERKRLNKRVSAM  365 (726)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            3334444443333333333

>KOG0298|consensus

Probab=90.50  E-value=1.9  Score=52.52  Aligned_cols=39  Identities=13%  Similarity=0.214  Sum_probs=33.5

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..+-|++|.+-.++      |||.+|..|...|+.. +++||.|+-
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence            44689999996654      9999999999999875 789999987

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.44  E-value=1.2  Score=41.96  Aligned_cols=71  Identities=14%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEAL-LNEMEVTGQAFEDMQEQN  344 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eAL-lsEIEsIgqAyEdmQeQN  344 (517)
                      +++..++.++..++.-...++++|....|+.++.+++.|+.+|+.++...... -.|++.+.+.|+.++..-
T Consensus        90 ~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w  161 (169)
T PF07106_consen   90 ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW  161 (169)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777777889999999999999999999999877633222 246777777777665543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK12704 phosphodiesterase; Provisional

Probab=90.43  E-value=18  Score=40.50  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLR  352 (517)
Q Consensus       321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~  352 (517)
                      ++.+....|++.+.+.++++.++...+|..++
T Consensus       117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a  148 (520)
T PRK12704        117 KELEQKQQELEKKEEELEELIEEQLQELERIS  148 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333344444444444444444444444444

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=90.40  E-value=0.18  Score=43.87  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=23.4

Q ss_pred             cccccchhhHHHHHhhh--ccCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETR--QRKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR--~RKCP~C~~  505 (517)
                      |+|.|=..||.+|+++-  +..||.|++
T Consensus        52 C~H~FH~hCI~kWl~~~~~~~~CPmCR~   79 (85)
T PF12861_consen   52 CSHNFHMHCILKWLSTQSSKGQCPMCRQ   79 (85)
T ss_pred             CccHHHHHHHHHHHccccCCCCCCCcCC
Confidence            99999999999999862  469999997

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.39  E-value=27  Score=37.12  Aligned_cols=78  Identities=21%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Q psy10797        352 REKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE---------------------KERFL  410 (517)
Q Consensus       352 ~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE---------------------~Er~L  410 (517)
                      .++++.+..|  |  |+..++..+.++..++..|...+....+....++.+|..                     ..|-|
T Consensus       126 ~ere~lV~qL--E--k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL  201 (319)
T PF09789_consen  126 HEREDLVEQL--E--KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL  201 (319)
T ss_pred             hHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence            3444444444  3  333445555555555555555554444444444444322                     34667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        411 QTVLTNAEKELHLRNQAMDLNKR  433 (517)
Q Consensus       411 ~~kLs~lEKEL~~lkqale~~kk  433 (517)
                      ..+|..++.|...+++++..++.
T Consensus       202 ~erl~q~qeE~~l~k~~i~KYK~  224 (319)
T PF09789_consen  202 KERLKQLQEEKELLKQTINKYKS  224 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888877777776654

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=90.35  E-value=19  Score=35.30  Aligned_cols=70  Identities=11%  Similarity=0.051  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797        300 RKIKQLEDQTHQLQKQVATHK-QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN  369 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~e-qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAd  369 (517)
                      .+++.....+.++.......+ -.....+.|.-.+-.|.+++-.+-.++++++...+....|+.+.+.|..
T Consensus        65 ~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~  135 (216)
T cd07627          65 AALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK  135 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555555555555433221 2223367788888899999999999999999999998888876666653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=90.27  E-value=18  Score=34.83  Aligned_cols=103  Identities=18%  Similarity=0.181  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHH
Q psy10797        304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER-IKSNQLHKLAREEKDTL  382 (517)
Q Consensus       304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK-~KAdQKyfaamreKdaL  382 (517)
                      ..+.-+...+...+.++....++-.+++....++++-+.+...+.+.+...++.+..+++.. .=.=+.|-+.++=.+.+
T Consensus         5 a~~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l   84 (158)
T PF09486_consen    5 AWRTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVL   84 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence            33334444445555666667777778888888888999999999999999999999988721 12245677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        383 REQVQALSLQIEAMHTAIRKLEEK  406 (517)
Q Consensus       383 e~Evk~Lk~QlekQ~e~I~kLeE~  406 (517)
                      ..++..+..++......+....+.
T Consensus        85 ~~~~~~~e~~~a~l~~~l~~~~~~  108 (158)
T PF09486_consen   85 EERVRAAEAELAALRQALRAAEDE  108 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777776665555544444443

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=90.25  E-value=5.9  Score=34.00  Aligned_cols=74  Identities=18%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10797        312 LQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSL  391 (517)
Q Consensus       312 Lr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~  391 (517)
                      |-.-|++.++|++++..|+-.....-+++..+....++++...-..+..|-.-          -++-|+..+.|+..|+.
T Consensus         2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~----------h~kmK~~YEeEI~rLr~   71 (79)
T PF08581_consen    2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA----------HRKMKQQYEEEIARLRR   71 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence            44557788888999999888888888888888777777776666666555333          33444555778888888


Q ss_pred             HHHH
Q psy10797        392 QIEA  395 (517)
Q Consensus       392 Qlek  395 (517)
                      +++.
T Consensus        72 eLe~   75 (79)
T PF08581_consen   72 ELEQ   75 (79)
T ss_dssp             HHCH
T ss_pred             HHHh
Confidence            7754

; PDB: 3VP9_B 3VP8_B.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=90.16  E-value=36  Score=38.09  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      |.+.........+.++..+-.++++.+   .++-.++..+..+...+...++.|..+-++|-..+
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~---~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i  122 (475)
T PRK10361         61 ECELLNNEVRSLQSINTSLEADLREVT---TRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI  122 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433   34445555566666677777777777777776665

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=90.11  E-value=0.086  Score=53.66  Aligned_cols=39  Identities=13%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             ccccccccc-cccc----------cccccchhhHHHHHhhhccCCC--CCCC
Q psy10797        467 EFSAKFVNF-RRKS----------YFFVEFLDCLRTRYETRQRKCP--KCNA  505 (517)
Q Consensus       467 e~kC~iC~~-r~K~----------CgHvFC~~CIq~rl~tR~RKCP--~C~~  505 (517)
                      +-+||+|.. |.-|          |+|.-|..|+++-+..-+--||  .|++
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            568999986 3333          9999999999999988888999  9998

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.08  E-value=2.9  Score=41.44  Aligned_cols=19  Identities=11%  Similarity=0.076  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHhhhHHHHhh
Q psy10797        274 EFRKFACVVRDSKRDERKK  292 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqk  292 (517)
                      .++.|+.+++...++-+.+
T Consensus        90 ~~~~rlp~le~el~~l~~~  108 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDK  108 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            4455555555444443333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=89.91  E-value=45  Score=38.93  Aligned_cols=75  Identities=23%  Similarity=0.216  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      .++..+.+|+...-.-..++   ..++++...-+-+.+..-..-...++++.|.|.+++..-+.-++.|...+.+|.-
T Consensus       151 eql~~Lt~aHq~~l~sL~~k---~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~  225 (739)
T PF07111_consen  151 EQLSSLTQAHQEALASLTSK---AEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRK  225 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            46666777766543333333   3344444444555555555666777888888888888888888888887777654

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG4265|consensus

Probab=89.68  E-value=0.18  Score=53.39  Aligned_cols=49  Identities=10%  Similarity=0.279  Sum_probs=38.1

Q ss_pred             cccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeec
Q psy10797        466 REFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYL  515 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIyl  515 (517)
                      +--+|-||.+..||     |.|+ -|+.|.+.- .--.++||.|+.+..-...||.
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchHhhheecc
Confidence            34689999999999     9999 699999873 3336899999995555555543

>KOG2129|consensus

Probab=89.67  E-value=20  Score=39.57  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL  347 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk  347 (517)
                      |++|..+.-+|...   +++|.++|.+-      -|+.|+..++.|
T Consensus       181 leQLRre~V~lent---lEQEqEalvN~------LwKrmdkLe~ek  217 (552)
T KOG2129|consen  181 LEQLRREAVQLENT---LEQEQEALVNS------LWKRMDKLEQEK  217 (552)
T ss_pred             HHHHHHHHHHHhhH---HHHHHHHHHHH------HHHHHHHHHHHH
Confidence            35555555555543   45666666653      366666666443

>KOG1039|consensus

Probab=89.58  E-value=0.17  Score=53.69  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=33.7

Q ss_pred             cccccccccccc-------------cccccccchhhHHHHHhhhc------cCCCCCCC
Q psy10797        466 REFSAKFVNFRR-------------KSYFFVEFLDCLRTRYETRQ------RKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~-------------K~CgHvFC~~CIq~rl~tR~------RKCP~C~~  505 (517)
                      ++..|-||.+..             -+|-|.||..||..|-..++      +.||-|+.
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv  218 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRV  218 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccC
Confidence            567899998742             11999999999999987777      99999998

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.48  E-value=3.7  Score=38.67  Aligned_cols=64  Identities=20%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAF--EDMQEQNSRLLQQLREKDDANFKLMT  363 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAy--EdmQeQNqrklqqL~EkED~n~KL~a  363 (517)
                      ..+..+..++.+|+.++..++++...|.+|+..+...-  +++..+...+-.++.+.++++..|-.
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777888888999999988888888888888888766  66777777777777777777766643

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=89.41  E-value=42  Score=37.88  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             chhhhHHHHHHhHhhhhc-CCcccccccccHHHHHH--HHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHH--HHHHHHh
Q psy10797        244 TSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKF--ACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQ--LQKQVAT  318 (517)
Q Consensus       244 ~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~r--lk~l~e~~~k~rqklad~Eal~rL~~lE~Eiee--Lr~kL~s  318 (517)
                      .-+.|..|+=.+|   ++ -|+++.+  +++-.-.|  +...+.++.=-+|.   -++++||+.||.|.+.  |+++++.
T Consensus       265 ~~~~~a~~~~~~~---~~p~~~svpy--~~a~~n~ril~sstes~e~L~qqV---~qs~EKIa~LEqEKEHw~LEaQL~k  336 (518)
T PF10212_consen  265 QYKKRAAAYMSSL---KKPCPESVPY--EEALANRRILLSSTESREGLAQQV---QQSQEKIAKLEQEKEHWMLEAQLAK  336 (518)
T ss_pred             HHHHHHHHHHHHh---cCCCCccCCh--HHHHhhhHHHhhhHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665555   33 5555543  34322222  33333333221222   2345777777777764  4455553

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG1850|consensus

Probab=89.40  E-value=34  Score=36.74  Aligned_cols=42  Identities=10%  Similarity=0.137  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH  422 (517)
Q Consensus       381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~  422 (517)
                      ...+.-..+++.+.++++....+++.-..+..++-.+||+.-
T Consensus       226 lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l  267 (391)
T KOG1850|consen  226 LYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETL  267 (391)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555666666777777666665566666666666644

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=89.34  E-value=0.11  Score=59.19  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      .+..++..+..++..++..+......+.+|+-
T Consensus       375 ~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLer  406 (722)
T PF05557_consen  375 ELEQEKEQLLKEIEELEASLEALKKLIRRLER  406 (722)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0824|consensus

Probab=89.33  E-value=0.15  Score=53.25  Aligned_cols=33  Identities=15%  Similarity=0.376  Sum_probs=28.4

Q ss_pred             cccccccccccccchhhHHHHHhhhccCCCCCCC
Q psy10797        472 FVNFRRKSYFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       472 iC~~r~K~CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      +|..+.- |+|.||..||+..+...++.||.|+.
T Consensus        18 n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~   50 (324)
T KOG0824|consen   18 NCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRF   50 (324)
T ss_pred             CcCcccc-ccchhhhhhhcchhhcCCCCCceecC
Confidence            3444444 99999999999999999999999998

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=89.21  E-value=19  Score=36.95  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797        356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALS  390 (517)
Q Consensus       356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk  390 (517)
                      ++..+|...+.-+.+.|..+..+.+....++..++
T Consensus       131 ~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~  165 (331)
T PRK03598        131 NRQQGLWKSRTISANDLENARSSRDQAQATLKSAQ  165 (331)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555554444444444433

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=89.00  E-value=12  Score=38.09  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        372 HKLAREEKDTLREQVQALSLQIEAMHT  398 (517)
Q Consensus       372 yfaamreKdaLe~Evk~Lk~QlekQ~e  398 (517)
                      |....+..+..+.++..++++++....
T Consensus       184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~  210 (301)
T PF14362_consen  184 YKEKRAQLDAAQAELDTLQAQIDAAIA  210 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            444455555555565555555444333

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=88.97  E-value=35  Score=36.40  Aligned_cols=18  Identities=6%  Similarity=-0.193  Sum_probs=11.1

Q ss_pred             eecchhhhHHHHHHhHhh
Q psy10797        241 SICTSAFQMSFYKSRWFD  258 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~  258 (517)
                      .++.-+.|++.||..|+.
T Consensus       210 ~~a~LE~RL~~LE~~lG~  227 (388)
T PF04912_consen  210 RAADLEKRLARLESALGI  227 (388)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            345556666666666666

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PLN03188 kinesin-12 family protein; Provisional

Probab=88.83  E-value=71  Score=39.72  Aligned_cols=125  Identities=20%  Similarity=0.298  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        335 QAFEDMQEQNSRLLQQLREKDDANFKLMT------ERIKSNQLHKLAR--------EEKDTLREQVQALSLQIEAMHTAI  400 (517)
Q Consensus       335 qAyEdmQeQNqrklqqL~EkED~n~KL~a------EK~KAdQKyfaam--------reKdaLe~Evk~Lk~QlekQ~e~I  400 (517)
                      .|..-...-..|-|.|+++++|+-..|.+      |.+- |=|-.|++        +=..+|.+|+..|+..-||-.   
T Consensus      1100 ~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~-dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker--- 1175 (1320)
T PLN03188       1100 EAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID-DVKKAAARAGVRGAESKFINALAAEISALKVEREKER--- 1175 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH---
Confidence            34444444556667777777777666542      1110 11111111        123456677777766555433   


Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcc
Q psy10797        401 RKLEEKERFLQTVLTNA-------EKELHLRNQA---MDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFG  463 (517)
Q Consensus       401 ~kLeE~Er~L~~kLs~l-------EKEL~~lkqa---le~~kkk~~E~sq~~~dLk~qLeel~Ek~~a~LEKL  463 (517)
                      +-|+|..|.|+.+|-+-       ..=|..++.+   +...+++..++.++++.++++++.+++|-..++.-+
T Consensus      1176 ~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~ 1248 (1320)
T PLN03188       1176 RYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTL 1248 (1320)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23555566666655432       1112233333   333467777777888888888887776665443333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=88.80  E-value=0.55  Score=53.62  Aligned_cols=8  Identities=25%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             ccCCCCCC
Q psy10797         25 VEPNGGPS   32 (517)
Q Consensus        25 ~~~~~~~~   32 (517)
                      +.+++.||
T Consensus        39 ~~~~~~~s   46 (722)
T PF05557_consen   39 VSTSASSS   46 (722)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            44444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.77  E-value=22  Score=40.78  Aligned_cols=76  Identities=18%  Similarity=0.333  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN---AEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~---lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      +.+-.+.++.|++.|+.-++.+...|.+|+..-..+..++..   ..+++..+....+..++++.|.....+.|+..|+
T Consensus       427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~  505 (652)
T COG2433         427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA  505 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666666666666666544443332221   2223333344444444444454455555555444

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.68  E-value=36  Score=36.13  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy10797        394 EAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       394 ekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      ++....+.+|+...+.|+.+|
T Consensus       181 N~L~Kqm~~l~~eKr~Lq~~l  201 (310)
T PF09755_consen  181 NRLWKQMDKLEAEKRRLQEKL  201 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.67  E-value=33  Score=35.67  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797        301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ  335 (517)
Q Consensus       301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq  335 (517)
                      ++..+-.++.+++.+.+..+++...|..||+.+..
T Consensus        60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~   94 (265)
T COG3883          60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE   94 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.67  E-value=23  Score=38.10  Aligned_cols=122  Identities=14%  Similarity=0.198  Sum_probs=69.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797        311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS  390 (517)
Q Consensus       311 eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk  390 (517)
                      +=|.-+++.++-.+++.+-++.+..-.+.+++...+-+..+..+|.++..-+...+   |.|..+......+..+.++++
T Consensus       217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~---~eYr~~~~~ls~~~~~y~~~s  293 (359)
T PF10498_consen  217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLI---QEYRSAQDELSEVQEKYKQAS  293 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444455555555556666666666666666667777776666554433   347777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy10797        391 LQIEAMHTAIRKLEEKERFLQTVLTNAEKE------LHLRNQAMDLNKRKA  435 (517)
Q Consensus       391 ~QlekQ~e~I~kLeE~Er~L~~kLs~lEKE------L~~lkqale~~kkk~  435 (517)
                      ..+......+.++-|.-.....++..-...      |...++++...+..+
T Consensus       294 ~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI  344 (359)
T PF10498_consen  294 EGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI  344 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            777666666666555444444433333222      334455555444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=88.66  E-value=39  Score=37.52  Aligned_cols=19  Identities=5%  Similarity=-0.109  Sum_probs=11.8

Q ss_pred             cchhhhHHHHHHhHhhhhc
Q psy10797        243 CTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       243 ~~a~~~~~al~~~l~~~~~  261 (517)
                      .+-++++..|+..|...++
T Consensus       158 ~sL~ekl~lld~al~~~~~  176 (511)
T PF09787_consen  158 RSLQEKLSLLDEALKREDG  176 (511)
T ss_pred             hhHHHHHHHHHHHHHhcCc
Confidence            4556666666666666555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.55  E-value=32  Score=37.02  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        400 IRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIE  437 (517)
Q Consensus       400 I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E  437 (517)
                      ++.++++-+..+..++.+.++|+...+.++..|+.+.|
T Consensus       282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee  319 (359)
T PF10498_consen  282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE  319 (359)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444555555444444444444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR01069 mutS2 MutS2 family protein

Probab=88.55  E-value=13  Score=43.36  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=16.6

Q ss_pred             CcccCCCCC-CCCCCCCccc------cccchhhhhhhhhhh
Q psy10797         33 SLIPMSPHH-KMMPGTGRDM------KMIESDQVRDLKSQL   66 (517)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~   66 (517)
                      -.||+..-+ ..+||.-.|.      -.||...+..|..++
T Consensus       191 ~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l  231 (771)
T TIGR01069       191 YVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKL  231 (771)
T ss_pred             EEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHH
Confidence            345555432 3456654442      345555555555444

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG4677|consensus

Probab=88.51  E-value=31  Score=38.49  Aligned_cols=48  Identities=8%  Similarity=0.147  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        383 REQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       383 e~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      .+|+-.++.-.+-+.+.++.+.+.-..|++++.++|.|...++.+...
T Consensus       308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~  355 (554)
T KOG4677|consen  308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT  355 (554)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence            344444455555566667777777777777777777776655555533

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.16  E-value=5.5  Score=33.50  Aligned_cols=20  Identities=40%  Similarity=0.423  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q psy10797        348 LQQLREKDDANFKLMTERIK  367 (517)
Q Consensus       348 lqqL~EkED~n~KL~aEK~K  367 (517)
                      ...++++|+.+..||.|.-|
T Consensus         4 ~~~l~EKDe~Ia~L~eEGek   23 (74)
T PF12329_consen    4 EKKLAEKDEQIAQLMEEGEK   23 (74)
T ss_pred             HHHHHhHHHHHHHHHHHHHH
Confidence            34567777777777655443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=88.02  E-value=24  Score=33.40  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        317 ATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAM  396 (517)
Q Consensus       317 ~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ  396 (517)
                      ++++-++..|...||.=..-...|.....+-++.++..-++..-+..|.....+...........+..++..++...++.
T Consensus        45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~  124 (177)
T PF13870_consen   45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL  124 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677888888888888888888888888888888888888888888888777777777777777777777777777766


Q ss_pred             HHHHHHHHHHH
Q psy10797        397 HTAIRKLEEKE  407 (517)
Q Consensus       397 ~e~I~kLeE~E  407 (517)
                      .....++....
T Consensus       125 ~~~~~~l~~~~  135 (177)
T PF13870_consen  125 RKQNKKLRQQG  135 (177)
T ss_pred             HHHHHHHHHhc
Confidence            66666665543

>KOG1003|consensus

Probab=87.83  E-value=32  Score=34.51  Aligned_cols=72  Identities=19%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        339 DMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       339 dmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      +..++..+|+.-=.++|...-++-+    +..+.+.+-++.-.+...+++|....++..+.....++..+.+..+|
T Consensus        82 K~eEVarkL~iiE~dLE~~eeraE~----~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL  153 (205)
T KOG1003|consen   82 KYEEVARKLVIIEGELERAEERAEA----AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL  153 (205)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344444444444444443333221    12334445555555555555555555555555555555555554444

>PF13166 AAA_13: AAA domain

Probab=87.79  E-value=54  Score=37.11  Aligned_cols=15  Identities=27%  Similarity=0.386  Sum_probs=7.7

Q ss_pred             CCccccccchhhhhh
Q psy10797         47 TGRDMKMIESDQVRD   61 (517)
Q Consensus        47 ~~~~~~~~~~~~~~~   61 (517)
                      .+.+.....+|-|++
T Consensus        59 ~~~~i~VFn~dfv~~   73 (712)
T PF13166_consen   59 ELSSIRVFNSDFVED   73 (712)
T ss_pred             CCCceEEeChHHHHH
Confidence            345555555555544

>KOG0982|consensus

Probab=87.76  E-value=50  Score=36.70  Aligned_cols=47  Identities=17%  Similarity=0.172  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK  419 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEK  419 (517)
                      .++-.+...+...+.-|+.+.+++.+--+++.|.-..++.++....+
T Consensus       307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~  353 (502)
T KOG0982|consen  307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK  353 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            34444555555566666666666666666666655555555544433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=87.44  E-value=41  Score=35.32  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10797        337 FEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA  388 (517)
Q Consensus       337 yEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~  388 (517)
                      ++.+..+-..+-.||.-.-++-.....=-.|++..|.....+++-+...++.
T Consensus       204 ~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kk  255 (309)
T PF09728_consen  204 VQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKK  255 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334434444333333333333344566666655555554444333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.34  E-value=47  Score=35.90  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=11.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEA  395 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~Qlek  395 (517)
                      +..+++++....+.|.++|++.+..
T Consensus       149 qL~~l~~e~~Ekeeesq~LnrELaE  173 (401)
T PF06785_consen  149 QLDALQQECGEKEEESQTLNRELAE  173 (401)
T ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            3344444444444444555444433

>COG5283 Phage-related tail protein [Function unknown]

Probab=87.32  E-value=64  Score=39.78  Aligned_cols=91  Identities=14%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10797        311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS  390 (517)
Q Consensus       311 eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk  390 (517)
                      .|...+++++.-.+-+-.|+..+-.+-.+.....+.+-.|++--|++..++..----+...|...|++++.+..++.++.
T Consensus        61 ~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~  140 (1213)
T COG5283          61 GLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLN  140 (1213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444444444444444444444444444445555666777887777777666777788888999999999999998


Q ss_pred             HHHHHHHHHHH
Q psy10797        391 LQIEAMHTAIR  401 (517)
Q Consensus       391 ~QlekQ~e~I~  401 (517)
                      +..-+|.....
T Consensus       141 k~maaQ~~l~e  151 (1213)
T COG5283         141 KSMAAQARLLE  151 (1213)
T ss_pred             hhhHHHHHHHH
Confidence            84444444333

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=87.28  E-value=68  Score=38.52  Aligned_cols=98  Identities=9%  Similarity=-0.054  Sum_probs=55.5

Q ss_pred             ccccccccceeccccceeecccCcceeeeecchh--hhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHH
Q psy10797        213 FSIFRFSSSTIFVYHCFDIFSLTSTLFVSICTSA--FQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDE  289 (517)
Q Consensus       213 ~~~~~~~~~~~~~~~c~~i~~l~~~~~~~~~~a~--~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~  289 (517)
                      |.+.-|-++|-|..--+--++|-+..+++....+  ..++.-.++|..=++ .|-..+.+.--.+.+..+++.+..++.+
T Consensus       128 FDv~gLQeih~ln~k~i~~~LL~sgt~G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~y  207 (984)
T COG4717         128 FDVDGLQEIHELNSKGILGYLLFSGTSGSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATY  207 (984)
T ss_pred             cchhhhHHHHHhhHhhHHHHHHHhccCCCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778888888888877778777776544332  233444444444344 5555444444445566666666666666


Q ss_pred             HhhcCcHHHH-HHHHHHHHHHH
Q psy10797        290 RKKLADEEAM-RKIKQLEDQTH  310 (517)
Q Consensus       290 rqklad~Eal-~rL~~lE~Eie  310 (517)
                      ++-+.+-+.. ++++.++.++.
T Consensus       208 h~lLe~r~~~~~rl~~l~~elr  229 (984)
T COG4717         208 HKLLESRRAEHARLAELRSELR  229 (984)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            6655433332 44444444443

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=87.21  E-value=44  Score=40.86  Aligned_cols=151  Identities=15%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             eeeecchhhhHHHHHHhHhhhhcCCcccccccccHHHHHH-HHHHHhhhHH-----HHhhcCcHHHHHHHHHHHHHHHHH
Q psy10797        239 FVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKF-ACVVRDSKRD-----ERKKLADEEAMRKIKQLEDQTHQL  312 (517)
Q Consensus       239 ~~~~~~a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~r-lk~l~e~~~k-----~rqklad~Eal~rL~~lE~EieeL  312 (517)
                      +.+...|+.||++++...+-=--.-   ..++.+..++++ +.++=+++..     +..+ -+-|...+|.....+++-|
T Consensus      1007 s~EA~~AK~QMDaIKqmIekKv~L~---~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~-Is~eLReQIq~~KQ~LesL 1082 (1439)
T PF12252_consen 1007 SEEARQAKAQMDAIKQMIEKKVVLQ---ALTQCQDALEKQNIAGALQALNNIPSDKEMSK-ISSELREQIQSVKQDLESL 1082 (1439)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhh-hhHHHHHHHHHHHHHHHHH
Confidence            4577889999999988765321111   334445555443 2222222211     0000 1233335555555555555


Q ss_pred             HHHHH--------hhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHH
Q psy10797        313 QKQVA--------THKQEEEALLNEMEVTGQAFED----MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHK-LAREEK  379 (517)
Q Consensus       313 r~kL~--------s~eqe~eALlsEIEsIgqAyEd----mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyf-aamreK  379 (517)
                      +..+.        +.+..+++|+.+|..=-.++|.    -.++..+.+..+..+.+.+.-|-.||++..-... -=..+.
T Consensus      1083 QRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDI 1162 (1439)
T PF12252_consen 1083 QRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDI 1162 (1439)
T ss_pred             HHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHH
Confidence            54432        3456777887766554444443    4566678888888899988888889887532221 223577


Q ss_pred             HHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQI  393 (517)
Q Consensus       380 daLe~Evk~Lk~Ql  393 (517)
                      +.|+++++.+...+
T Consensus      1163 EkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1163 EKLEKQLQVIHTKL 1176 (1439)
T ss_pred             HHHHHHHHHhhhhh
Confidence            88888888887664

There is little literature describing the family.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.08  E-value=10  Score=32.30  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL  361 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL  361 (517)
                      .+|..+-..|.-|+..++.+++.++.|..|......+-+.+...|.++-++-..+.+++.-|
T Consensus        11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074          11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666777888888899999999999999999999999999999999999988877655

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.03  E-value=31  Score=33.55  Aligned_cols=55  Identities=24%  Similarity=0.283  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        370 QLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      .....+-..+..++.++..++.+++.+...+.+|+..-..+..++..++.+...+
T Consensus        84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l  138 (221)
T PF04012_consen   84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL  138 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667777888888888888888888888887777777777766654433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG2930|consensus

Probab=86.89  E-value=0.33  Score=43.81  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=23.9

Q ss_pred             cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |-|.|=..||-.||++|+ .||.|++
T Consensus        81 CNHaFH~hCisrWlktr~-vCPLdn~  105 (114)
T KOG2930|consen   81 CNHAFHFHCISRWLKTRN-VCPLDNK  105 (114)
T ss_pred             cchHHHHHHHHHHHhhcC-cCCCcCc
Confidence            999999999999999987 7999998

>PRK11519 tyrosine kinase; Provisional

Probab=86.88  E-value=45  Score=38.52  Aligned_cols=21  Identities=5%  Similarity=-0.078  Sum_probs=10.5

Q ss_pred             eeeeecchhhhHHHHHHhHhh
Q psy10797        238 LFVSICTSAFQMSFYKSRWFD  258 (517)
Q Consensus       238 ~~~~~~~a~~~~~al~~~l~~  258 (517)
                      ..|+...-+.-++.|...|..
T Consensus       200 ~~~~~~~~~~~~~~l~~~l~V  220 (719)
T PRK11519        200 FTVTKYSTLGMINNLQNNLTV  220 (719)
T ss_pred             EEEEEcCHHHHHHHHHhcceE
Confidence            344444444455556555554

>KOG4593|consensus

Probab=86.83  E-value=70  Score=37.39  Aligned_cols=28  Identities=14%  Similarity=0.032  Sum_probs=16.6

Q ss_pred             ccCcceeeeecchhhhHHHHHHhHhhhh
Q psy10797        233 SLTSTLFVSICTSAFQMSFYKSRWFDFR  260 (517)
Q Consensus       233 ~l~~~~~~~~~~a~~~~~al~~~l~~~~  260 (517)
                      |-.+.-.-...+++.+.=.++..|..++
T Consensus        48 s~~~~~~s~n~~~~s~~~~~~~~l~~Lq   75 (716)
T KOG4593|consen   48 SMQSEERSENITSKSLLMQLEDELMQLQ   75 (716)
T ss_pred             CCCchhhhccchhHHHHHHHHHHHHHHh
Confidence            3344444455666666666766666654

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=86.80  E-value=38  Score=34.27  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE-----QNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe-----QNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      .+-|..+|..+.+|-+.++.+-+.-..|-.=+..++++...+-.     ...+.+.++++.++++..+..+-+-.+-
T Consensus        28 k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~  104 (234)
T cd07664          28 QQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADF  104 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            35566666666666666664444444444444444554444332     4566677777777777776554444333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>KOG2751|consensus

Probab=86.80  E-value=15  Score=40.43  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=59.8

Q ss_pred             eeeeecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHH
Q psy10797        238 LFVSICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQV  316 (517)
Q Consensus       238 ~~~~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL  316 (517)
                      +.-++.++++-...+++=|+.+.+ +++.     +++++...++++.+.+.+         ..+.++.+|++-++|-..+
T Consensus       148 ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~-----~~~~~~~e~~~l~~eE~~---------L~q~lk~le~~~~~l~~~l  213 (447)
T KOG2751|consen  148 LDKEVEDAEDEVDTYKACLQRLEQQNQDV-----SEEDLLKELKNLKEEEER---------LLQQLEELEKEEAELDHQL  213 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccc-----chHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence            444566788888888888888888 6665     566666666666555433         4566667777777777777


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        317 ATHKQEEEALLNEMEVTGQAFEDMQ  341 (517)
Q Consensus       317 ~s~eqe~eALlsEIEsIgqAyEdmQ  341 (517)
                      ..++.+.+.+..|.....+-|-.++
T Consensus       214 ~e~~~~~~~~~e~~~~~~~ey~~~~  238 (447)
T KOG2751|consen  214 KELEFKAERLNEEEDQYWREYNNFQ  238 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776666655555443

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=86.72  E-value=33  Score=33.52  Aligned_cols=57  Identities=18%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDD  356 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED  356 (517)
                      +|-+.|+.--.-||.+|+.....+++|..||..+..-|+.+++....+=.+....+.
T Consensus        74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~  130 (182)
T PF15035_consen   74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE  130 (182)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666778999999999999999999999999999988776666555554433

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=86.62  E-value=25  Score=41.19  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=8.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHH
Q psy10797        368 SNQLHKLAREEKDTLREQVQ  387 (517)
Q Consensus       368 AdQKyfaamreKdaLe~Evk  387 (517)
                      |++.+..++++-+.+-.+++
T Consensus       575 a~~~l~~a~~~~~~~i~~lk  594 (782)
T PRK00409        575 AQQAIKEAKKEADEIIKELR  594 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444433

>KOG2129|consensus

Probab=86.58  E-value=38  Score=37.56  Aligned_cols=16  Identities=0%  Similarity=-0.083  Sum_probs=10.3

Q ss_pred             ccHHHHHHHHHHHhhh
Q psy10797        271 GSLEFRKFACVVRDSK  286 (517)
Q Consensus       271 ~e~elr~rlk~l~e~~  286 (517)
                      ..+++..||..+...-
T Consensus        44 ~~e~l~~rv~slsq~N   59 (552)
T KOG2129|consen   44 PGESLGARVSSLSQRN   59 (552)
T ss_pred             CHHHHHHHHHHHHhhh
Confidence            3457777777776443

>KOG1962|consensus

Probab=86.49  E-value=9.8  Score=38.37  Aligned_cols=57  Identities=23%  Similarity=0.210  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        356 DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQT  412 (517)
Q Consensus       356 D~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~  412 (517)
                      +.+.++.+|..|..-.-.....+.+..+.++..|+.|.+.-+....+|.|.-..|++
T Consensus       151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~  207 (216)
T KOG1962|consen  151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE  207 (216)
T ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            333333333333333333333333334444444444444444444444444333443

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=86.46  E-value=30  Score=36.11  Aligned_cols=45  Identities=22%  Similarity=0.146  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhhhHHHHhhcC--cHHHH-----HHHHHHHHHHHHHHHHHHh
Q psy10797        274 EFRKFACVVRDSKRDERKKLA--DEEAM-----RKIKQLEDQTHQLQKQVAT  318 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkla--d~Eal-----~rL~~lE~EieeLr~kL~s  318 (517)
                      ++++++++++.++..+|.+..  |++..     ..+..++.++.+++.+++.
T Consensus       181 ~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~  232 (362)
T TIGR01010       181 EAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQ  232 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788888888888888763  44432     4455555555555555543

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=86.34  E-value=75  Score=37.25  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        399 AIRKLEEKERFLQTVLTNAEKELHL  423 (517)
Q Consensus       399 ~I~kLeE~Er~L~~kLs~lEKEL~~  423 (517)
                      .-.+..|.|..+..+|.++|+.|..
T Consensus       576 lqekvsevEsrl~E~L~~~E~rLNe  600 (739)
T PF07111_consen  576 LQEKVSEVESRLREQLSEMEKRLNE  600 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446778888899999999998864

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=86.24  E-value=42  Score=34.50  Aligned_cols=6  Identities=33%  Similarity=0.606  Sum_probs=2.2

Q ss_pred             HHHHHH
Q psy10797        416 NAEKEL  421 (517)
Q Consensus       416 ~lEKEL  421 (517)
                      .+++|+
T Consensus       288 ~l~~ei  293 (297)
T PF02841_consen  288 KLQKEI  293 (297)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.22  E-value=27  Score=32.10  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT  333 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI  333 (517)
                      ..|+.+|.|+..|+.+++.++++-+.+..||=.+
T Consensus        23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l   56 (120)
T PF12325_consen   23 SQLRRLEGELASLQEELARLEAERDELREEIVKL   56 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1941|consensus

Probab=85.90  E-value=6.5  Score=42.92  Aligned_cols=39  Identities=26%  Similarity=0.492  Sum_probs=33.1

Q ss_pred             ccccccccccc--cc-------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797        467 EFSAKFVNFRR--KS-------YFFVEFLDCLRTRYETR-QRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~--K~-------CgHvFC~~CIq~rl~tR-~RKCP~C~~  505 (517)
                      ++.|..|.++.  |+       |.|+|=..|.++.++++ .|.||+|++
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            48899999853  44       99999999999999764 589999996

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.85  E-value=22  Score=40.83  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        378 EKDTLREQVQALSLQIEAMHTAIRKLEEK  406 (517)
Q Consensus       378 eKdaLe~Evk~Lk~QlekQ~e~I~kLeE~  406 (517)
                      +..+++.++..|+..+..+...|.+|+..
T Consensus       475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~  503 (652)
T COG2433         475 EIRARDRRIERLEKELEEKKKRVEELERK  503 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555443

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=85.64  E-value=25  Score=31.12  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH  422 (517)
Q Consensus       387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~  422 (517)
                      ..|+..++.....|.++++....++.++.++++++.
T Consensus        70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~  105 (110)
T TIGR02338        70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666666666666655555543

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function

Probab=85.49  E-value=40  Score=33.33  Aligned_cols=95  Identities=15%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFL  410 (517)
Q Consensus       331 EsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L  410 (517)
                      +.+-++|+.-|.+.+.-|..+..+|-....        ++.-.++++++...+.|-...+.......+.=..|+..+..+
T Consensus        82 e~~~kr~e~eQa~VQeEL~r~a~rEReAa~--------e~l~~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fy  153 (187)
T PF05300_consen   82 EELLKRFEQEQAQVQEELARLAQREREAAA--------EHLTRAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFY  153 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455678888888888888888777665442        455567777777777664444333222222223344444555


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHH
Q psy10797        411 QTVLTNAEKELH-LRNQAMDLNKR  433 (517)
Q Consensus       411 ~~kLs~lEKEL~-~lkqale~~kk  433 (517)
                      ..+|+.+|+.-. ..+...+...+
T Consensus       154 keql~~le~k~~e~yk~t~eq~~~  177 (187)
T PF05300_consen  154 KEQLARLEEKNAEFYKVTSEQYHK  177 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777655 33444444433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=85.46  E-value=44  Score=33.76  Aligned_cols=45  Identities=18%  Similarity=0.188  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797        273 LEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATH  319 (517)
Q Consensus       273 ~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~  319 (517)
                      .-+++.|++++..+.+-++..  +.+..+-..+|.++++++...+..
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~--A~~~a~~k~~e~~~~~~~~~~~k~   71 (225)
T COG1842          27 KMLEQAIRDMESELAKARQAL--AQAIARQKQLERKLEEAQARAEKL   71 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555544433  233333334444444444444433

>KOG4275|consensus

Probab=85.38  E-value=0.095  Score=54.57  Aligned_cols=43  Identities=14%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             ccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797        467 EFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLY  514 (517)
Q Consensus       467 e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy  514 (517)
                      .+.|.||.|.+.+     |||+ -|..|     .+|+-.||.|++..--|.+||
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----Gkrm~eCPICRqyi~rvvrif  348 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKC-----GKRMNECPICRQYIVRVVRIF  348 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhh-----ccccccCchHHHHHHHHHhhh
Confidence            5889999999999     9995 57777     456679999998444455554

>TIGR02231 conserved hypothetical protein

Probab=85.27  E-value=9.3  Score=42.07  Aligned_cols=32  Identities=16%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10797        301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEV  332 (517)
Q Consensus       301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEs  332 (517)
                      +++.+++++++|+.+++..+.+.+++...+.-
T Consensus        72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~  103 (525)
T TIGR02231        72 RLAELRKQIRELEAELRDLEDRGDALKALAKF  103 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666666555533

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=85.11  E-value=43  Score=33.32  Aligned_cols=122  Identities=18%  Similarity=0.245  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHh
Q psy10797        295 DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE---------KDDANFKLMTER  365 (517)
Q Consensus       295 d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E---------kED~n~KL~aEK  365 (517)
                      -++..++|.....++.+++..+.........+..=.+.+.+..-+...+.+..=.++..         .+.....|.+|.
T Consensus        80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~  159 (240)
T PF12795_consen   80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL  159 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence            45566777777777777777776665555555444444444333333332222222222         244455566665


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTN  416 (517)
Q Consensus       366 ~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~  416 (517)
                      .--+..-..+..+..+...-..-++.+.+-....|.+++..-..|+..+..
T Consensus       160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~  210 (240)
T PF12795_consen  160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ  210 (240)
T ss_pred             HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555554444444444444444555555666666666665556554444

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=85.05  E-value=14  Score=34.36  Aligned_cols=67  Identities=7%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        369 NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA  435 (517)
Q Consensus       369 dQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~  435 (517)
                      +|.+.++...|+-|...+..+-.+++++.+.....++.-..++..++....++...+..+...+.++
T Consensus        53 ~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki  119 (126)
T PF07889_consen   53 EQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI  119 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666667777777777777777777777777776666666666666555555555554444333

The region featured in this family is approximately 100 amino acids long.

>PRK10869 recombination and repair protein; Provisional

Probab=84.99  E-value=73  Score=35.91  Aligned_cols=11  Identities=18%  Similarity=0.147  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTH  310 (517)
Q Consensus       300 ~rL~~lE~Eie  310 (517)
                      +++.-++-+++
T Consensus       185 ~~~d~l~fql~  195 (553)
T PRK10869        185 ARKQLLQYQLK  195 (553)
T ss_pred             HHHHHHHHHHH
Confidence            33334443333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=84.83  E-value=46  Score=33.41  Aligned_cols=35  Identities=11%  Similarity=0.178  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE  342 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQe  342 (517)
                      ||.-|+.+|+....+...=.+||=++-...++...
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~   45 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRA   45 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33344444444444433333444443333333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.73  E-value=10  Score=31.89  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ  335 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq  335 (517)
                      ..|+.|+.++++|+.+..++.++.+.|..|.+.+.+
T Consensus        18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~   53 (72)
T PF06005_consen   18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ   53 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG4460|consensus

Probab=84.72  E-value=41  Score=38.46  Aligned_cols=33  Identities=9%  Similarity=0.275  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      ..+..+.++|.+-+.++++..+||...+.+.-+
T Consensus       665 q~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~  697 (741)
T KOG4460|consen  665 QLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLS  697 (741)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667777777777888888888877777554

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=84.58  E-value=40  Score=32.54  Aligned_cols=46  Identities=11%  Similarity=0.032  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10797        324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSN  369 (517)
Q Consensus       324 eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAd  369 (517)
                      ...+.|.-.+..|.+++-.+-.+++.++...++...|...++.|+.
T Consensus       110 ~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~  155 (236)
T PF09325_consen  110 GEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK  155 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3345555566666666666666666666666655555554444443

This is the C-terminal dimerisation domain [].

>KOG3091|consensus

Probab=84.44  E-value=13  Score=41.51  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             eecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10797        241 SICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATH  319 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~  319 (517)
                      ++.+...+++++.+.+..+++ +.|.   ....++++.|..++.                .||=.+=..++-||..=-++
T Consensus       349 ~~~~~r~ri~~i~e~v~eLqk~~ad~---~~KI~~~k~r~~~Ls----------------~RiLRv~ikqeilr~~G~~L  409 (508)
T KOG3091|consen  349 EVKQHRIRINAIGERVTELQKHHADA---VAKIEEAKNRHVELS----------------HRILRVMIKQEILRKRGYAL  409 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhccCCcC


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy10797        320 KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT-ERIKSNQLHKLARE--EKDTLREQVQALSLQIEAM  396 (517)
Q Consensus       320 eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a-EK~KAdQKyfaamr--eKdaLe~Evk~Lk~QlekQ  396 (517)
                      ..++|.|-.-+++|-+-.++=           .+.--++.+|+. +|++++|.+-.++-  +.|.+.+....|..+.|.+
T Consensus       410 ~~~EE~Lr~Kldtll~~ln~P-----------nq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l  478 (508)
T KOG3091|consen  410 TPDEEELRAKLDTLLAQLNAP-----------NQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEAL  478 (508)
T ss_pred             CccHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        397 HTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD  429 (517)
Q Consensus       397 ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale  429 (517)
                      ..++.-++..-+.+.   .-+++.+..+++.++
T Consensus       479 ~~Lv~Ilk~d~edi~---~~l~E~~~~~~~~~~  508 (508)
T KOG3091|consen  479 TKLVNILKGDQEDIK---HQLIEDLEICRKSLE  508 (508)
T ss_pred             HHHHHHHHhHHHHHH---HHHHhhHHHHhhhcC

>KOG0826|consensus

Probab=84.29  E-value=0.31  Score=51.43  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=39.9

Q ss_pred             cccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797        468 FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG  516 (517)
Q Consensus       468 ~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt  516 (517)
                      -.|++|....-|      -|-|||..||-..+.+ ..+||.=|.  ...++.|+|-+
T Consensus       301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l~rl~~~  356 (357)
T KOG0826|consen  301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHLIRLFNK  356 (357)
T ss_pred             ccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHHHHHhcC
Confidence            579999986666      5999999999999985 789999888  77777777754

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.22  E-value=18  Score=38.09  Aligned_cols=88  Identities=23%  Similarity=0.336  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhhhHHHHhhcC--cHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        273 LEFRKFACVVRDSKRDERKKLA--DEE---AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL  347 (517)
Q Consensus       273 ~elr~rlk~l~e~~~k~rqkla--d~E---al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrk  347 (517)
                      -+++..|.+++++.++.=--.|  |-|   ...++.-|..++++|+..+..++.++.--..|++.+-.+++.++.+...+
T Consensus        80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L  159 (302)
T PF09738_consen   80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL  159 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666665544211112  333   22677777778888888888888887777888888888999988888888


Q ss_pred             HHHHHHHHHHHHH
Q psy10797        348 LQQLREKDDANFK  360 (517)
Q Consensus       348 lqqL~EkED~n~K  360 (517)
                      -.+|.++|+.+.|
T Consensus       160 re~L~~rdeli~k  172 (302)
T PF09738_consen  160 REQLKQRDELIEK  172 (302)
T ss_pred             HHHHHHHHHHHHH
Confidence            8889999888866

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=84.20  E-value=61  Score=34.38  Aligned_cols=146  Identities=17%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhh
Q psy10797        305 LEDQTHQLQKQVA----THKQEEEALLNEMEVTGQAFEDMQEQNSR-----------LLQQLREKDDANFKLMTERIKSN  369 (517)
Q Consensus       305 lE~EieeLr~kL~----s~eqe~eALlsEIEsIgqAyEdmQeQNqr-----------klqqL~EkED~n~KL~aEK~KAd  369 (517)
                      |..+|+.||..++    ...+.+.-|..||+.+-.--++++.-..-           --.||..+-..|+.|.++--+-+
T Consensus         4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EK   83 (305)
T PF14915_consen    4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEK   83 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhH


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        370 QLHKLAREEKDTLREQVQALSLQIEAMHT-------------------------AIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       370 QKyfaamreKdaLe~Evk~Lk~QlekQ~e-------------------------~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      |.-..+-.+.++....+..+-.-.+.+..                         .|+.++|....|..+|+.+|.....+
T Consensus        84 q~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsL  163 (305)
T PF14915_consen   84 QNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSL  163 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        425 NQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       425 kqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      +..+-.-+..+.|-+-..+.++..|.
T Consensus       164 e~elh~trdaLrEKtL~lE~~QrdL~  189 (305)
T PF14915_consen  164 EIELHHTRDALREKTLALESVQRDLS  189 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=84.16  E-value=45  Score=32.85  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL  361 (517)
Q Consensus       328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL  361 (517)
                      ++...-..+-.+.-.+|+.+..+|...|.+-..|
T Consensus        43 ~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslL   76 (178)
T PF14073_consen   43 SEQNERERAHQELSKQNQDLSSQLSAAETRCSLL   76 (178)
T ss_pred             HHhhhhhcccchhhhccHHHHHHHHHHHHHHHHH
Confidence            3344444444555555666666666666655444

>KOG3970|consensus

Probab=84.07  E-value=0.56  Score=47.60  Aligned_cols=46  Identities=22%  Similarity=0.514  Sum_probs=36.2

Q ss_pred             hhccccccc--ccccccccccc-------cccccchhhHHHHHhhh-------ccCCCCCCC
Q psy10797        460 LEFGKDREF--SAKFVNFRRKS-------YFFVEFLDCLRTRYETR-------QRKCPKCNA  505 (517)
Q Consensus       460 LEKLKk~e~--kC~iC~~r~K~-------CgHvFC~~CIq~rl~tR-------~RKCP~C~~  505 (517)
                      |+=|+.+.|  +|++|+....+       |+|+|=+.|+++|-.+=       --.||.|+.
T Consensus        41 LqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~  102 (299)
T KOG3970|consen   41 LQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQ  102 (299)
T ss_pred             HHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCC
Confidence            444554666  79999997655       99999999999997652       337999998

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=84.01  E-value=64  Score=34.49  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        372 HKLAREEKDTLREQVQALSLQIEAMHTAIRK-LEEK-E-----RFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAAD  444 (517)
Q Consensus       372 yfaamreKdaLe~Evk~Lk~QlekQ~e~I~k-LeE~-E-----r~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~d  444 (517)
                      ...++++|..|+.|+...+-..+.-...++. -+|. +     +.....--.+.-|++.++.-+...++.+..-+|..+-
T Consensus        68 ~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK  147 (351)
T PF07058_consen   68 VQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEK  147 (351)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888888888877766555444332 1110 0     1111111223334444444444434444444455555


Q ss_pred             HHHHHHH
Q psy10797        445 LKLHLVI  451 (517)
Q Consensus       445 Lk~qLee  451 (517)
                      |+.+|..
T Consensus       148 ~klRLK~  154 (351)
T PF07058_consen  148 LKLRLKV  154 (351)
T ss_pred             HHHHHHH
Confidence            6666553

>KOG4302|consensus

Probab=84.01  E-value=93  Score=36.30  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h
Q psy10797        298 AMRKIKQLEDQTHQLQKQVA-------THKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKS-N  369 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~-------s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KA-d  369 (517)
                      .++.|+.+|+++.+|-..+-       ..++....|..++..+..+.++|+.|-...+.++.+.-+.+.+|-.|-.-. +
T Consensus        66 L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~  145 (660)
T KOG4302|consen   66 LLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED  145 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            34667777777777666654       233566688889999999999999999999999998888888886654332 0


Q ss_pred             -hhHH------HHHHHHHHHHHHHHHHHHHH
Q psy10797        370 -QLHK------LAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       370 -QKyf------aamreKdaLe~Evk~Lk~Ql  393 (517)
                       -.++      ...+..+.+..+++.|+.+-
T Consensus       146 ~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek  176 (660)
T KOG4302|consen  146 LPSFLIADESDLSLEKLEELREHLNELQKEK  176 (660)
T ss_pred             CCcccccCcccccHHHHHHHHHHHHHHHHHH
Confidence             1111      12345555555555555543

>KOG4572|consensus

Probab=84.00  E-value=97  Score=37.23  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=50.8

Q ss_pred             cccccHHHHHHHHHHHhhhHHHHhhc----------CcHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10797        268 NIYGSLEFRKFACVVRDSKRDERKKL----------ADEEAM-RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQA  336 (517)
Q Consensus       268 ~i~~e~elr~rlk~l~e~~~k~rqkl----------ad~Eal-~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqA  336 (517)
                      +-.++++.++---+..+.+.+++..+          -.+++. +.++..|.+..++|..++.++++.++++.||+.++..
T Consensus       952 ~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eae 1031 (1424)
T KOG4572|consen  952 DEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAE 1031 (1424)
T ss_pred             CcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555555445554444443332          122232 7788889999999999999999999999999998877


Q ss_pred             HHHHH
Q psy10797        337 FEDMQ  341 (517)
Q Consensus       337 yEdmQ  341 (517)
                      .-.+.
T Consensus      1032 IiQek 1036 (1424)
T KOG4572|consen 1032 IIQEK 1036 (1424)
T ss_pred             HHhcc
Confidence            65543

>PRK15374 pathogenicity island 1 effector protein SipB; Provisional

Probab=83.98  E-value=86  Score=35.90  Aligned_cols=75  Identities=13%  Similarity=0.125  Sum_probs=46.3

Q ss_pred             hhhHHHHHHhHhhhhcCCccccccccc--HHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797        246 AFQMSFYKSRWFDFRSLSDSASNIYGS--LEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHK  320 (517)
Q Consensus       246 ~~~~~al~~~l~~~~~~~d~~~~i~~e--~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~e  320 (517)
                      +.-+..|.+.|+.+..+-..+...+.+  ++++.-++++++.....++..- -..+..++..++..+..|+.+++...
T Consensus        98 ~~Sl~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~  175 (593)
T PRK15374         98 DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLD  175 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            333445556666666644444444444  3666667777777666655521 24566788888888888888877554

>KOG4438|consensus

Probab=83.92  E-value=76  Score=35.22  Aligned_cols=174  Identities=15%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             hhhHHHHhhcCcHHHH-------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        284 DSKRDERKKLADEEAM-------------RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ  350 (517)
Q Consensus       284 e~~~k~rqklad~Eal-------------~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq  350 (517)
                      ...+.+++-.-++.++             .+...+..++++.......-+++...|-.+|+.+.+..-+.-.|-.+++.+
T Consensus       123 a~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e  202 (446)
T KOG4438|consen  123 ALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAE  202 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA-LSLQI----EAMHTAIRKLEEKERFLQTVLTNAEKELHLRN  425 (517)
Q Consensus       351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~-Lk~Ql----ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lk  425 (517)
                      ..++-....-.-.++.+|.--.-...+       |++. |++++    +|..+.+..+++.-...++...+++++-.-+.
T Consensus       203 ~n~~k~s~~s~~~k~l~al~llv~tLe-------e~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~  275 (446)
T KOG4438|consen  203 YNKMKKSSTSEKNKILNALKLLVVTLE-------ENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILE  275 (446)
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHH----------HHHHHHHHHHHHHHH---------HHHHHHhcchhhhhccc
Q psy10797        426 QAMDLNK----------RKAIESAQSAADLKL---------HLVIIYTNGPARLEFGK  464 (517)
Q Consensus       426 qale~~k----------kk~~E~sq~~~dLk~---------qLeel~Ek~~a~LEKLK  464 (517)
                      ..++..+          +++.+.....+.++.         .|+...+....++++++
T Consensus       276 ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk  333 (446)
T KOG4438|consen  276 EKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLK  333 (446)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=83.89  E-value=44  Score=35.22  Aligned_cols=18  Identities=22%  Similarity=0.453  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVA  317 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~  317 (517)
                      ++|..-|.||++|+.+|.
T Consensus        82 ~~l~dRetEI~eLksQL~   99 (305)
T PF15290_consen   82 NRLHDRETEIDELKSQLA   99 (305)
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            333344444444444444

>KOG1814|consensus

Probab=83.83  E-value=0.55  Score=50.91  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhhc-------cCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQ-------RKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~-------RKCP~C~~  505 (517)
                      +.|.|.||.+..+-        |+|+||..|..+.++.--       -+||.|+-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            67999999986544        999999999999987532       28876554

>PRK10698 phage shock protein PspA; Provisional

Probab=83.74  E-value=50  Score=33.00  Aligned_cols=83  Identities=13%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        338 EDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNA  417 (517)
Q Consensus       338 EdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~l  417 (517)
                      +.+..+....-..+.+++++....+ ++-. +.....+..+|.....++..|+.+++.+...+.+|++....|..++..+
T Consensus        55 k~~er~~~~~~~~~~~~e~kA~~Al-~~G~-EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea  132 (222)
T PRK10698         55 KQLTRRIEQAEAQQVEWQEKAELAL-RKEK-EDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET  132 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444555444432 3332 3355566678888899999999999999999999999999999999887


Q ss_pred             HHHHH
Q psy10797        418 EKELH  422 (517)
Q Consensus       418 EKEL~  422 (517)
                      ...-.
T Consensus       133 k~k~~  137 (222)
T PRK10698        133 RARQQ  137 (222)
T ss_pred             HHHHH
Confidence            76533

>KOG1899|consensus

Probab=83.67  E-value=47  Score=38.57  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT  333 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI  333 (517)
                      .+|..||-=|++-|.+|-   ..+|+|-.|+=+.
T Consensus       139 EKIrDLE~cie~kr~kLn---atEEmLQqellsr  169 (861)
T KOG1899|consen  139 EKIRDLETCIEEKRNKLN---ATEEMLQQELLSR  169 (861)
T ss_pred             hhHHHHHHHHHHHHhhhc---hHHHHHHHHHHhh
Confidence            444444444444444333   3334455555443

>KOG4787|consensus

Probab=83.62  E-value=61  Score=37.42  Aligned_cols=131  Identities=15%  Similarity=0.183  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHH------------HHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED------MQEQNSR------------LLQQLREKDDANF  359 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd------mQeQNqr------------klqqL~EkED~n~  359 (517)
                      +..+++.++.+++.|..+.+.++.+.+-|+.-|-.|..|.+.      .+..|.=            ++--+.+.++.+.
T Consensus       330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~  409 (852)
T KOG4787|consen  330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL  409 (852)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc
Confidence            557888999999999999999999999999888887776543      2222221            1111112222111


Q ss_pred             HHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        360 KLMTERIK----SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE-KERFLQTVLTNAEKELHLRNQAMD  429 (517)
Q Consensus       360 KL~aEK~K----AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE-~Er~L~~kLs~lEKEL~~lkqale  429 (517)
                      -+. |-.|    +.|..--+|.+...-..|++.++++.+........-+- +...|+.+|..+.|+...++.-+.
T Consensus       410 ~~s-~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~  483 (852)
T KOG4787|consen  410 ELT-TQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLN  483 (852)
T ss_pred             cHH-HHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHh
Confidence            111 1111    22333344555555556666666665544443322111 223466677777776655555443

>KOG2114|consensus

Probab=82.95  E-value=1.1  Score=52.44  Aligned_cols=49  Identities=22%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             hhcccccc-----cccccccccccc------cccccchhhHHHHHhhhccCCCCCCC---CCCCceE
Q psy10797        460 LEFGKDRE-----FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA---KANDYHR  512 (517)
Q Consensus       460 LEKLKk~e-----~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~---~~~Dv~r  512 (517)
                      ++-++.+.     -+|+.|....--      |||.|=..|..+    .--+||.|..   +.+|..+
T Consensus       828 l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~----~~~~CP~C~~e~~~~m~l~~  890 (933)
T KOG2114|consen  828 LETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLED----KEDKCPKCLPELRGVMDLKR  890 (933)
T ss_pred             HHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhcc----CcccCCccchhhhhhHHHHH
Confidence            55555422     489999874332      999999999983    2359999988   6655543

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells

Probab=82.86  E-value=24  Score=39.63  Aligned_cols=22  Identities=5%  Similarity=0.347  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATH  319 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~  319 (517)
                      +..++..+.++.+.|+.+++..
T Consensus        74 i~~~l~~a~~e~~~L~~eL~~~   95 (593)
T PF06248_consen   74 IQPQLRDAAEELQELKRELEEN   95 (593)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333

These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus

>KOG4809|consensus

Probab=82.85  E-value=96  Score=35.59  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797        306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd  380 (517)
                      .+.|..|+..+..++...-.|..++-++-.|-...+.....+=--|..+-+...|+-+.-.||...-.-+|-.++
T Consensus       344 kEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe  418 (654)
T KOG4809|consen  344 KEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPE  418 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChh
Confidence            333444444444444455555666666666666666666555555555666677777777777777666665544

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=82.71  E-value=17  Score=30.35  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHL  423 (517)
Q Consensus       381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~  423 (517)
                      .|+.++.+|+..++.....++..+...+.|...-..+..+|..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~   44 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD   44 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888777777777777666666555555555443

>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains

Probab=82.68  E-value=65  Score=33.57  Aligned_cols=85  Identities=12%  Similarity=0.172  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLRE---KDDANFKLMTERIKSNQLHK-L-AREEKDTLREQVQALSLQIEAMHTAIR  401 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~E---kED~n~KL~aEK~KAdQKyf-a-amreKdaLe~Evk~Lk~QlekQ~e~I~  401 (517)
                      ...+..+-.-++.|..+-.+++.++.+   .||-..+|+.+.-+.+...| . ..++..-.+.-...+...+.+|..++.
T Consensus       192 v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~  271 (342)
T cd08915         192 VSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIK  271 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555533   35555677776544321111 1 111222344445556666777888888


Q ss_pred             HHHHHHHHHH
Q psy10797        402 KLEEKERFLQ  411 (517)
Q Consensus       402 kLeE~Er~L~  411 (517)
                      ++.+....+.
T Consensus       272 ~i~~~~~~f~  281 (342)
T cd08915         272 EIDAANQEFS  281 (342)
T ss_pred             HHHHHHHHHH
Confidence            8877665553

This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains

>KOG2264|consensus

Probab=82.63  E-value=3.1  Score=47.21  Aligned_cols=53  Identities=23%  Similarity=0.375  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQ  349 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklq  349 (517)
                      |....|+++...||+|++.+..++.|.++|..||+..+.+++++.++|+-|+.
T Consensus       104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~  156 (907)
T KOG2264|consen  104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLF  156 (907)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence            44566778888889999999999999999999999999999999999987764

>KOG1962|consensus

Probab=82.60  E-value=11  Score=38.01  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        385 QVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKL  447 (517)
Q Consensus       385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~  447 (517)
                      ++..++.+.++++.    ++|....+.+.+..+++++...+..++..+++..++.+..+++..
T Consensus       135 ~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~  193 (216)
T KOG1962|consen  135 ENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD  193 (216)
T ss_pred             HHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34444444444333    444444444444444444444444444333333333333333333

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=82.58  E-value=68  Score=34.24  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=15.2

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       360 KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      +|..+++-+.+.+..+..+.+....+++.++.++
T Consensus       148 ~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l  181 (390)
T PRK15136        148 PLGNANLIGREELQHARDAVASAQAQLDVAIQQY  181 (390)
T ss_pred             HHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=82.56  E-value=40  Score=31.03  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=12.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797        310 HQLQKQVATHKQEEEALLNEMEVTGQAFED  339 (517)
Q Consensus       310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEd  339 (517)
                      +.|...+..++.+..+|-.|+..+.+.-+.
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~   48 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDE   48 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444433333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4302|consensus

Probab=82.37  E-value=92  Score=36.33  Aligned_cols=24  Identities=13%  Similarity=-0.056  Sum_probs=18.1

Q ss_pred             eeeeecchhhhHHHHHHhHhhhhc
Q psy10797        238 LFVSICTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       238 ~~~~~~~a~~~~~al~~~l~~~~~  261 (517)
                      |.-++..+++.++.|-++|.....
T Consensus        66 L~~~ia~~eael~~l~s~l~~~~~   89 (660)
T KOG4302|consen   66 LLQEIAVIEAELNDLCSALGEPSI   89 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccc
Confidence            344667788888888888887766

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=82.18  E-value=56  Score=34.12  Aligned_cols=105  Identities=21%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        326 LLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       326 LlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      |+.||-.++..|-+.-++..-.+..+++.|+.+...              +.-|+.+..++..|+.. +-++.+|..|+.
T Consensus       108 Ll~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~--------------R~~r~~l~d~I~kLk~k-~P~s~kl~~Leq  172 (271)
T PF13805_consen  108 LLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPS--------------RDRRRKLQDEIAKLKYK-DPQSPKLVVLEQ  172 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH--TTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHhHHHHHHHHHHHhc-CCCChHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy10797        406 KERFLQTVLTNAEKELHLR-----NQAMDLNKRKAIESAQSAADL  445 (517)
Q Consensus       406 ~Er~L~~kLs~lEKEL~~l-----kqale~~kkk~~E~sq~~~dL  445 (517)
                      .-..........|.+|...     ++++..+=..+.|.+.+..-|
T Consensus       173 ELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Il  217 (271)
T PF13805_consen  173 ELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAIL  217 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH

>KOG0742|consensus

Probab=82.09  E-value=94  Score=35.00  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=25.6

Q ss_pred             cHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        295 DEEAMRKIKQLEDQTH---QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN  344 (517)
Q Consensus       295 d~Eal~rL~~lE~Eie---eLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN  344 (517)
                      ||+++.|-+++-.+|.   --+..++..+.+++....|+..=-+-||.+|.|+
T Consensus        74 DpeaLERaAKAlrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~  126 (630)
T KOG0742|consen   74 DPEALERAAKALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQL  126 (630)
T ss_pred             ChHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5666666655555554   2333344444444455555555555555554444

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=82.00  E-value=16  Score=40.73  Aligned_cols=45  Identities=24%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN  344 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQN  344 (517)
                      .-|+.+-.++.++|.+++.+..+++.|..|-+++-+-=.++..|-
T Consensus        59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i  103 (472)
T TIGR03752        59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI  103 (472)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            445666677777888888888888888877776644444433333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR00618 sbcc exonuclease SbcC

Probab=81.99  E-value=1.3e+02  Score=36.39  Aligned_cols=10  Identities=30%  Similarity=1.099  Sum_probs=7.9

Q ss_pred             hccCCCCCCC
Q psy10797        496 RQRKCPKCNA  505 (517)
Q Consensus       496 R~RKCP~C~~  505 (517)
                      ....||.||.
T Consensus       500 ~~~~cplcgs  509 (1042)
T TIGR00618       500 QEEPCPLCGS  509 (1042)
T ss_pred             CCCCCCCCCC
Confidence            3458999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09343 prefoldin subunit beta; Provisional

Probab=81.96  E-value=40  Score=30.64  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH  422 (517)
Q Consensus       387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~  422 (517)
                      ..++..++.....|..++.++..++.++.+++.+|.
T Consensus        74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~  109 (121)
T PRK09343         74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKIN  109 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555566666666556655555555554

>PLN02939 transferase, transferring glycosyl groups

Probab=81.86  E-value=80  Score=38.37  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKE  407 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~E  407 (517)
                      +-++.+.+..|+..|+.-++..+..+...+|.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (977)
T PLN02939        224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETE  256 (977)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence            456777777777777777776666666655544

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=81.82  E-value=1.2e+02  Score=35.96  Aligned_cols=36  Identities=11%  Similarity=0.130  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhhhHHHH---hhcCcHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDER---KKLADEEAMRKIKQLEDQT  309 (517)
Q Consensus       274 elr~rlk~l~e~~~k~r---qklad~Eal~rL~~lE~Ei  309 (517)
                      +|+.+|..+++..-+.+   .+...+....+|++|..|+
T Consensus       433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~  471 (762)
T PLN03229        433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEI  471 (762)
T ss_pred             cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHH
Confidence            44444444444433321   1233444445555555555

>KOG2817|consensus

Probab=81.71  E-value=0.85  Score=49.17  Aligned_cols=50  Identities=24%  Similarity=0.267  Sum_probs=39.7

Q ss_pred             ccccccc----ccc-c-ccc--cccccchhhHHHHHhhhc--cCCCCCCC--CCCCceEeec
Q psy10797        466 REFSAKF----VNF-R-RKS--YFFVEFLDCLRTRYETRQ--RKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       466 ~e~kC~i----C~~-r-~K~--CgHvFC~~CIq~rl~tR~--RKCP~C~~--~~~Dv~rIyl  515 (517)
                      +.|-|||    |.+ | |.-  ||||-|.+-+..-...-.  =|||=|-.  ...|.++|||
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            5578999    665 2 222  999999999998776533  49999999  8999999986

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=81.55  E-value=65  Score=32.80  Aligned_cols=34  Identities=12%  Similarity=-0.039  Sum_probs=16.1

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10797        358 NFKLMTERIKSNQLHKLAREEKDTLREQVQALSL  391 (517)
Q Consensus       358 n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~  391 (517)
                      ..+|..+++-+.+.|..+..+.+....++..++.
T Consensus       123 ~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~  156 (327)
T TIGR02971       123 YRSLFRDGAVSASDLDSKALKLRTAEEELEEALA  156 (327)
T ss_pred             HHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555444444444444443

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=81.52  E-value=79  Score=33.74  Aligned_cols=91  Identities=20%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFE-D------MQEQNSRLLQQLREKDDANFKLMTERIKSNQLH  372 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyE-d------mQeQNqrklqqL~EkED~n~KL~aEK~KAdQKy  372 (517)
                      +.|+.-..|.++.+...+.++....+|..-...+..-+. .      ....+..+.+-+.+..+.|.+|..|..--.|++
T Consensus        16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl   95 (319)
T PF09789_consen   16 QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKL   95 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444443333221111 0      011334555666777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALS  390 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk  390 (517)
                      ..+..+...|...+...+
T Consensus        96 ~E~qGD~KlLR~~la~~r  113 (319)
T PF09789_consen   96 NEAQGDIKLLREKLARQR  113 (319)
T ss_pred             HHHhchHHHHHHHHHhhh
Confidence            777776666666555443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=81.36  E-value=29  Score=31.70  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy10797        376 REEKDTLREQVQALSLQIEA  395 (517)
Q Consensus       376 mreKdaLe~Evk~Lk~Qlek  395 (517)
                      -.++|.|..-+++|+.|.+.
T Consensus        36 ~kqkd~L~~~l~~L~~q~~s   55 (107)
T PF09304_consen   36 AKQKDQLRNALQSLQAQNAS   55 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHH
Confidence            34444444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=81.01  E-value=62  Score=32.16  Aligned_cols=95  Identities=15%  Similarity=0.113  Sum_probs=43.6

Q ss_pred             hhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10797        257 FDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIK--QLEDQTHQLQKQVATHKQEEEALLNEMEVTG  334 (517)
Q Consensus       257 ~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~--~lE~EieeLr~kL~s~eqe~eALlsEIEsIg  334 (517)
                      ++|.--+++.......++.+..|..+...+.--.-+..+-|.+.+-.  +-..-.+.|...++.++++...+..||+.|-
T Consensus        84 sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN  163 (221)
T PF05700_consen   84 SRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVN  163 (221)
T ss_pred             HhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444333323333345555556555555544333333333331111  1111223444444455555555556666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10797        335 QAFEDMQEQNSRLLQQL  351 (517)
Q Consensus       335 qAyEdmQeQNqrklqqL  351 (517)
                      ..-+..|.....++..|
T Consensus       164 ~~RK~~Q~~~~~~L~~L  180 (221)
T PF05700_consen  164 RERKRRQEEAGEELRYL  180 (221)
T ss_pred             HHHHHHHHHhHHHHHHH
Confidence            66666666665555443

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG1001|consensus

Probab=80.84  E-value=0.54  Score=53.87  Aligned_cols=44  Identities=14%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             hhcccccccccccccccccc-----cccccchhhHHHHHhhhcc-CCCCCCC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQR-KCPKCNA  505 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~R-KCP~C~~  505 (517)
                      +.++... +-|.+|.+ ...     |||.||.+|+...++...- +||.|+.
T Consensus       448 i~~l~~~-~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~  497 (674)
T KOG1001|consen  448 IVDLSVS-HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRN  497 (674)
T ss_pred             HHHHhhc-cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHH
Confidence            3444423 89999999 444     9999999999999987655 5999987

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.83  E-value=13  Score=35.57  Aligned_cols=27  Identities=19%  Similarity=0.318  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        406 KERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       406 ~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                      .++....++..+++||...+..++..+
T Consensus       155 ~~~~~~~ei~~lk~el~~~~~~~~~Lk  181 (192)
T PF05529_consen  155 ENKKLSEEIEKLKKELEKKEKEIEALK  181 (192)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555544444443333

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=80.76  E-value=22  Score=40.25  Aligned_cols=24  Identities=8%  Similarity=0.206  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEME  331 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIE  331 (517)
                      ++++++..++..++.-++.+.+++
T Consensus       165 ~~~~~~~~~k~~~~~w~~~~~~Lp  188 (555)
T TIGR03545       165 TAEEIEKSLKAMQQKWKKRKKDLP  188 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344444444444444444444443

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>KOG4552|consensus

Probab=80.53  E-value=67  Score=32.77  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        378 EKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       378 eKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      +-..++..+++|.+.+|+-.+.|++|+.
T Consensus        68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk   95 (272)
T KOG4552|consen   68 EQQKREQLMRTLEAHVEKRDEVIQQLQK   95 (272)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3344556667777777777777776543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=80.46  E-value=70  Score=32.47  Aligned_cols=17  Identities=6%  Similarity=0.296  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHhhHHH
Q psy10797        306 EDQTHQLQKQVATHKQE  322 (517)
Q Consensus       306 E~EieeLr~kL~s~eqe  322 (517)
                      +.+++.++..++..+++
T Consensus       107 ~~~i~~~~~~~~~a~~~  123 (334)
T TIGR00998       107 QAKVESLKIKLEQAREK  123 (334)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444433333

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.36  E-value=55  Score=38.51  Aligned_cols=10  Identities=40%  Similarity=0.601  Sum_probs=4.0

Q ss_pred             cchhhhhhhh
Q psy10797         54 IESDQVRDLK   63 (517)
Q Consensus        54 ~~~~~~~~~~   63 (517)
                      +|...+..|.
T Consensus       224 ~ep~~~~~ln  233 (782)
T PRK00409        224 IEPQSVVELN  233 (782)
T ss_pred             EEcHHHHHHH
Confidence            3444344333

>KOG4403|consensus

Probab=80.06  E-value=19  Score=39.91  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=0.0

Q ss_pred             eecchhhhHHHHHHhHhhhhc-CCcccccccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797        241 SICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVAT  318 (517)
Q Consensus       241 ~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s  318 (517)
                      +++.|+.-+..++.+|...++ +.+.    .-|. +|+.+++++-+...-      ++++......  .|+|.||.+|+.
T Consensus       253 ~Lq~aEqsl~dlQk~Lekar~e~rnv----avek~~lerkl~ea~rl~el------reg~e~e~~r--kelE~lR~~L~k  320 (575)
T KOG4403|consen  253 GLQRAEQSLEDLQKRLEKAREEQRNV----AVEKLDLERKLDEAPRLSEL------REGVENETSR--KELEQLRVALEK  320 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhch----hhhhhhHHHHHhhhhhhhhh------hcchhHHHHH--HHHHHHHHHHHH


Q ss_pred             hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10797        319 HKQEEEALLN-----EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ  370 (517)
Q Consensus       319 ~eqe~eALls-----EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQ  370 (517)
                      .+.+.++-.+     -+...-|---+..-|+-.+--|-++++=...|=++||+|-++
T Consensus       321 AEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr  377 (575)
T KOG4403|consen  321 AEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR  377 (575)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	2e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-07
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	4e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	3e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-05
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	6e-05
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	5e-04
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	5e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 14/176 (7%)

Query: 279  ACVVRDSKRDERKKLADE----EAMRKIK-QLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             C  R   + E KKL  E    E  +K+   LE++  QLQ+++     E+      +   
Sbjct: 895  CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI----DEQNKEYKSLL-- 948

Query: 334  GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             +   +++   S   ++LR   +       E   +       +EE   LR+++     + 
Sbjct: 949  -EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 394  EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
            + +     K + +   L + L   E+   L+ +  +LN+R   ++ +    ++  L
Sbjct: 1008 KTIEEWADKYKHETEQLVSELK--EQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 16/162 (9%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 274  EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT 333
             + +    +   +   R+ +A  E  +K+K       + +K         E  + +++  
Sbjct: 882  HYHRTLKAIVYLQCCYRRMMAKREL-KKLKIEARSVERYKKL----HIGLENKIMQLQ-- 934

Query: 334  GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI 393
             +  ++  ++   LL+++   +        +     +  +++ EE      +V +L  +I
Sbjct: 935  -RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993

Query: 394  EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA 435
              +   + + + +++ ++      + E        +L ++  
Sbjct: 994  AKLRKELHQTQTEKKTIEEWADKYKHE--TEQLVSELKEQNT 1033

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 9/144 (6%)

Query: 286  KRDERKKLADEEAMRK-----IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
                ++K+ ++    K     +  LE       +++ +  +       E +        +
Sbjct: 930  IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 341  QEQNSRLLQQLREKDDANFKLMTERIKSNQ----LHKLAREEKDTLREQVQALSLQIEAM 396
            QE+ ++L ++L +       +     K       L    +E+   L+ + + L+ +I   
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 397  HTAIRKLEEKERFLQTVLTNAEKE 420
               I +  EK+   +T     +  
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLN 1073

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
            S ++E      E +M+  +  ++   +L +     ++ E  L  ++    Q   D+Q  
Sbjct: 6   SSLKEETAYWK-ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD 64

Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKL 403
           N RL  ++    +   KL  +  +S +   +  ++    R   + L   +  +  A   L
Sbjct: 65  NQRLKYEVEALKE---KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121

Query: 404 EEKERFLQTVLTNAEKELHLRNQAMDLNK 432
           E  +R     L + E+ L   NQA++ N 
Sbjct: 122 ERAKRATIMSLEDFEQRL---NQAIERNA 147

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.1 bits (127), Expect = 6e-08
 Identities = 27/167 (16%), Positives = 67/167 (40%)

Query: 286 KRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
           K+ +  KL  E A+ +  + E      + +    + E  +L  +++ T    +   E   
Sbjct: 6   KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65

Query: 346 RLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEE 405
              ++L   +        +    N+  +L  EE D  +E++     ++E    A  + E 
Sbjct: 66  DAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125

Query: 406 KERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII 452
             + +++     E+++ ++   +   K  A ++ +   ++   LVII
Sbjct: 126 GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 172

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 2/166 (1%)

Query: 283 RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
           +++  D   +   +   A  + KQLED+   LQK++   + E +     ++   +  E  
Sbjct: 15  KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELA 74

Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
           +++ +     +   +        E  ++ +    A ++ +   +        ++ + +  
Sbjct: 75  EKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRA 134

Query: 401 RKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
           +K EEK    +  L  A+      ++  +   RK +         +
Sbjct: 135 QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 19/166 (11%), Positives = 59/166 (35%), Gaps = 2/166 (1%)

Query: 283 RDSKRDERKKLAD--EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
            D   +  K   +  E A +K    E     L +++   ++E +     +    Q  E+ 
Sbjct: 57  LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA 116

Query: 341 QEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAI 400
           ++      + ++  +    K   +        K A+   +    + + ++ ++  + + +
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176

Query: 401 RKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
            + EE+    +      E+E+      +   + +A + +Q     +
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYE 222

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 2/139 (1%)

Query: 311 QLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQ 370
            ++K++   K ++E  L+  +      +  ++++ +L  +L            E  K ++
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQAMD 429
             K A+E+ +   ++       + +++  I+  EE+    Q  L  A ++L      A +
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 430 L-NKRKAIESAQSAADLKL 447
                K IES     + K+
Sbjct: 123 SERGMKVIESRAQKDEEKM 141

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 18/150 (12%), Positives = 51/150 (34%)

Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
            K  +  +   +    + ++ E++    + Q+   K   E    + E   +    ++   
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176

Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
            R  ++    +    +L  E        K    + +   ++      +I+ +   +++ E
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236

Query: 405 EKERFLQTVLTNAEKELHLRNQAMDLNKRK 434
            +  F +  +T  EK +      +   K K
Sbjct: 237 TRAEFAERSVTKLEKSIDDLEDELYAQKLK 266

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 16/176 (9%)

Query: 287 RDERKKLADE--EAMRKIKQLEDQTHQLQ--------------KQVATHKQEEEALLNEM 330
            D  K+L DE     +K+K  ED+  +                K+    + +  +L   +
Sbjct: 33  EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRI 92

Query: 331 EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
           ++  +  +  QE+ +  LQ+L E + A  +            +   E+ +    Q++   
Sbjct: 93  QLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK 152

Query: 391 LQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
              E       ++  K   +++ L  AE+   L        + +      +   L+
Sbjct: 153 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLE 208

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 19/126 (15%), Positives = 49/126 (38%)

Query: 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR 383
           +A+  +M++     E+  ++        +  +D + +L  E +   +  K   +E D   
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAA 443
           E ++    ++E         E     L   +   E+EL    + +    +K  E+ ++A 
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121

Query: 444 DLKLHL 449
           + +  +
Sbjct: 122 ESERGM 127

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 20/158 (12%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 289 ERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL 348
           +R +     A++K+++ E    + ++ +    +  E+   + E   +  E  + Q     
Sbjct: 100 DRAQERLATALQKLEEAEKAADESERGM----KVIESRAQKDE---EKMEIQEIQLKEAK 152

Query: 349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKER 408
               + D    ++  + +      + A E  +    +   L  +I+ +   ++ LE +  
Sbjct: 153 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAE 212

Query: 409 FLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLK 446
                    E+E+ + +  +   + +A  + +S   L+
Sbjct: 213 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 250

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 19/142 (13%), Positives = 56/142 (39%), Gaps = 4/142 (2%)

Query: 300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANF 359
           +++++  D            ++    +   +        ++QE+N  L     + D   +
Sbjct: 13  KQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYY 72

Query: 360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEK 419
           +L        +      E    L+ ++ +L  +++ +   + K+E + +  Q +L ++EK
Sbjct: 73  QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132

Query: 420 ELHLRNQAMDLNKRKAIESAQS 441
           E       ++++    ++S Q 
Sbjct: 133 E----KNNLEIDLNYKLKSLQQ 150

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 1/142 (0%)

Query: 306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER 365
            ++  QLQKQ+           +      ++  +M +  S+L    RE  + N  L   +
Sbjct: 5   NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64

Query: 366 IKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH-LR 424
            ++++ +   +   +  R      S  I  +   I  L+E+ + L+  L   E E    +
Sbjct: 65  SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ 124

Query: 425 NQAMDLNKRKAIESAQSAADLK 446
           +      K K          LK
Sbjct: 125 DMLNHSEKEKNNLEIDLNYKLK 146

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 284  DSKRDERKKLAD--EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQ 341
              + ++ K L     +    I +LE +  + +K     ++ +  L  E     +   ++Q
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 342  EQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
             Q + L  QL +K++     +            A ++   L   +  L   +E+   A  
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

Query: 402  KLEEKERFLQTVLTNAEKEL 421
            K E+++R L   L   + EL
Sbjct: 1141 KAEKQKRDLSEELEALKTEL 1160

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 32/188 (17%)

Query: 287  RDERKKLADEEAMR------------KIKQLEDQTHQLQKQVATHKQEEEAL---LNEME 331
             D  ++L +EEA R            KIK++ED    ++ Q     +E + L   ++++ 
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 332  VTGQAFEDMQEQNSRLLQQL-REKDDANFKLMTERIKSNQLHKLARE---EKDTLREQVQ 387
                  E+  +  ++L  +      +   +L  E     +L K+ R+   E   L EQ+ 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 388  ALSLQIEAMHTAIRKLE----------EKERFLQTVLTNAEKELHLRNQAM--DLNK-RK 434
             L  QI  +   + K E          E E   +       +EL      +  DL   + 
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 435  AIESAQSA 442
            A   A+  
Sbjct: 1138 ARNKAEKQ 1145

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 34/182 (18%), Positives = 80/182 (43%), Gaps = 10/182 (5%)

Query: 274  EFRKFACVVRDSKRDERKKLADE-----EAMRKIKQLEDQTHQLQKQVATHKQEEEALLN 328
            E ++ A         +  +L +E     E ++   +L  +  +++ ++A  KQE E +L+
Sbjct: 871  ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930

Query: 329  EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQA 388
            EME      E+ +E++ +L  + ++       L  +  +     +  + EK T   +++ 
Sbjct: 931  EME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987

Query: 389  LSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH-LRNQAMDLNKRKAIESAQSAADLKL 447
            +   I  M     KL ++ + L+  +++    L     +A +L K K  +     ++L++
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-KHESMISELEV 1046

Query: 448  HL 449
             L
Sbjct: 1047 RL 1048

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 8/170 (4%)

Query: 283  RDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK---QEEEALLNEMEVTGQAFED 339
             +   +   ++ +EE   + +QL+ +  ++Q+Q+   +   +EEEA   +++        
Sbjct: 926  EEILHEMEARIEEEE--ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ---LEKVT 980

Query: 340  MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
               +  ++   +   +D N KL  ER    +             E+ + L+       + 
Sbjct: 981  ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 400  IRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHL 449
            I +LE + +  +      EK              +  E     A+LK  L
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 25/166 (15%), Positives = 72/166 (43%), Gaps = 3/166 (1%)

Query: 273  LEFRKFACVVRDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM 330
            L F     +    + +E +   +E      + ++ E +  +L+++     +E+  L  ++
Sbjct: 842  LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901

Query: 331  EVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALS 390
            +   + + + +E   RL  + +E ++   ++     +  +  +  + EK  +++Q+  L 
Sbjct: 902  QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961

Query: 391  LQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQAMDLNKRKA 435
             Q+E    A +KL+ ++      +   E ++  + +Q   L K + 
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 31/184 (16%), Positives = 75/184 (40%), Gaps = 18/184 (9%)

Query: 283  RDSKRDERKKLADEEAMRKIKQLEDQTHQLQK----------QVATHKQEEEALLNEMEV 332
                + E+KK+  +    + +QLE++    QK          ++   + +   + ++   
Sbjct: 943  SQQLQAEKKKMQQQMLDLE-EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

Query: 333  TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQL-----HKLAREEK--DTLREQ 385
              +  + ++E+ S L   L E+++    L   + K   +      +L +EEK    L + 
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 386  VQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADL 445
             + L  +   +H  I +L+ +   L+  L   E+EL      ++    +   + +   +L
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 446  KLHL 449
            + H+
Sbjct: 1122 ESHI 1125

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 283  RDSKRDERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM 340
            R      ++KL  E  +   +I +L+ Q  +L+ Q+A  ++E +A L  +E       + 
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114

Query: 341  QEQNSRL---LQQLREKDDANFKLMTERIKSNQ-LHKLAREEKDTLREQVQALSLQIEAM 396
             ++   L   +  L+E  ++      +  K  + L +     K  L + +   + Q E  
Sbjct: 1115 LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELR 1174

Query: 397  HTAIRKLEEK 406
             +  +  ++K
Sbjct: 1175 GSDYKDDDDK 1184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 48/319 (15%), Positives = 97/319 (30%), Gaps = 88/319 (27%)

Query: 226 YHCFDIFSLTSTLFVSICTSAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDS 285
           Y   DI S+            F+ +F  +  FD + + D   +I    E      ++   
Sbjct: 16  YQYKDILSV------------FEDAFVDN--FDCKDVQDMPKSILSKEEIDH---IIMSK 58

Query: 286 KRDER-KKLAD--------------EEAMRK-IKQLEDQTHQLQKQVATHKQEEEALLNE 329
                  +L                EE +R   K L       Q+Q +   +      + 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 330 MEVTGQAFEDMQEQNSRLLQQLRE-----KDDANFKL--M-----------------TER 365
           +    Q F        +   +LR+     +   N  +  +                  + 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 366 IKSNQLH--KLAREEK-DTLREQVQALSLQIEAMHTA--------IRKLEEKERFLQTVL 414
               ++    L      +T+ E +Q L  QI+   T+          ++   +  L+ +L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 415 TNAEKE---LHLRN-------QAMDLNKR-------KAIESAQSAADLKLHLVIIYTNGP 457
            +   E   L L N        A +L+ +       K +    SAA    H+ + + +  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMT 297

Query: 458 ARLEFGKDREFSAKFVNFR 476
             L   + +    K+++ R
Sbjct: 298 --LTPDEVKSLLLKYLDCR 314

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 39/255 (15%), Positives = 72/255 (28%), Gaps = 60/255 (23%)

Query: 269 IYGSLEFRKFACVVRDSKRDERKKLADEEA-----MRKIKQLEDQTHQLQKQVATHKQEE 323
           I G L   K   V  D     + +   +       ++     E     LQK +       
Sbjct: 155 IDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 324 EALLNEMEVTGQAFEDMQEQNSRLLQQLREK------DDA---------NFK---LMTER 365
            +  +           +Q +  RLL+    +       +          N     L+T R
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 366 IKS--NQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHL 423
            K   + L   A     +L      L+             +E +  L   L    ++  L
Sbjct: 274 FKQVTDFL-SAATTTHISLDHHSMTLT------------PDEVKSLLLKYLDCRPQD--L 318

Query: 424 RNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDREFSAKFVNFRRKSYFFV 483
             + +  N R  +  +  A  ++        +G A  +  K        VN  + +    
Sbjct: 319 PREVLTTNPR-RL--SIIAESIR--------DGLATWDNWKH-------VNCDKLTTIIE 360

Query: 484 EFLDCLRTRYETRQR 498
             L+ L    E R+ 
Sbjct: 361 SSLNVLEP-AEYRKM 374

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 45/326 (13%), Positives = 93/326 (28%), Gaps = 89/326 (27%)

Query: 59  VRDLKSQLNGQNTAKRSNHLNQTFCVASLLIAQLRRKTERMKKIEQAGTLDETTPWDSSF 118
            +DL  +         +N         S++   +R         +       TT  +SS 
Sbjct: 315 PQDLPRE------VLTTNPR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 119 GIFRLSSTVF--VYHCFSIFR----FSSSTVFVYHCFSIFRFSSSTVFVYHCFSIF--RF 170
            +  L    +  ++   S+F       +  + +     I       V   H +S+   + 
Sbjct: 364 NV--LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 171 SSSTVFVYHCFSIFRFSSSTVFVYH-----------CFSIFRFSSSTVFVYHCFSIFRFS 219
             ST+ +   +   +      +  H            F         +  Y     +   
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY----FYSH- 476

Query: 220 SSTIFVYHCFDI-----FSLTSTLFVSICTSAFQMSFYKSRWFDFRSL------SDSASN 268
                 +H  +I      +L   +F                  DFR L        +A N
Sbjct: 477 ----IGHHLKNIEHPERMTLFRMVF-----------------LDFRFLEQKIRHDSTAWN 515

Query: 269 IYGSL-----EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQE- 322
             GS+     + + +   + D+         D +  R +  + D   ++++ +   K   
Sbjct: 516 ASGSILNTLQQLKFYKPYICDN---------DPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 323 --EEALLNEMEVTGQAFEDMQEQNSR 346
               AL+ E       FE+  +Q  R
Sbjct: 567 LLRIALMAE---DEAIFEEAHKQVQR 589

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens} Length = 307

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 10/171 (5%)

Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEM-----EVTGQAFE 338
               +E +        +  K+L      LQK++A ++               E  G   E
Sbjct: 135 GQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVE 194

Query: 339 DMQEQNSRLLQQLREKDDANFKLMTERIKSN--QLHKLAREEKDTLREQVQALSLQIEAM 396
             + + + +     +      +   ER+++   ++    R+  D ++EQV  +  ++E  
Sbjct: 195 QGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQ 254

Query: 397 HTAIR-KLEEKERFLQTVLTNAEKELH--LRNQAMDLNKRKAIESAQSAAD 444
              IR + E  +  L++      +++      Q   +   +   +A   +D
Sbjct: 255 AQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVEKVQAAEGTSAAPVPSD 305

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 30/102 (29%)

Query: 284 DSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQ 343
           D    E       E++RK +  E+Q  +LQ+  A  K  E+          +A +D++E 
Sbjct: 78  DRLTQE------PESIRKWR--EEQRKRLQELDAASKVMEQEWRE------KAKKDLEEW 123

Query: 344 NSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ 385
           N R  +Q+ EK             +N+       +K   ++ 
Sbjct: 124 NQRQSEQV-EK----------NKINNR-----IADKAFYQQP 149

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 274 EFRKFACVVRDSKRDERKKLADEEAMRK--IKQLEDQTH----QLQKQVATHKQEEEALL 327
           E RK     R  + D   K   E+  R+   K LE+       Q++K    ++  ++A  
Sbjct: 93  EQRK-----RLQELDAASK-VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146

Query: 328 NEME 331
            + +
Sbjct: 147 QQPD 150

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 315 QVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL 374
           Q     QE E++    E          EQ  RL    +E D A       ++   +  + 
Sbjct: 76  QADRLTQEPESIRKWRE----------EQRKRL----QELDAA------SKVMEQEWREK 115

Query: 375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ 411
           A+++ +   ++      Q+E      R  ++   F Q
Sbjct: 116 AKKDLEEWNQRQSE---QVEKNKINNRIADKA--FYQ 147

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 19/121 (15%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 288 DERKKLADE--EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNS 345
            E   + +E       +++ E +  +L++++ +  QE+  L  +++       D +E+  
Sbjct: 13  KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72

Query: 346 RLLQQLREKD----DANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIR 401
           +L++   + +    + N +L  E   + +L      +K  L ++   L   I+ +   + 
Sbjct: 73  QLIKNKIQLEAKVKEMNKRLEDEEEMNAELT----AKKRKLEDECSELKRDIDDLELTLA 128

Query: 402 K 402
           K
Sbjct: 129 K 129

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIK 367
           ++ + +K++A+ K+E   L   +E +    ++++E+   LLQ   EK+D   ++  E+  
Sbjct: 7   KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQ---EKNDLQLQVQAEQDN 63

Query: 368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKEL-HLRNQ 426
                  A E  D L +    L  +++ M+  +   EE    L       E E   L+  
Sbjct: 64  LAD----AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119

Query: 427 AMDL 430
             DL
Sbjct: 120 IDDL 123

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 18/184 (9%)

Query: 288 DERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRL 347
               +LA E      +       Q  +Q A  + E + +L++ E          E+  + 
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE---------AEKARKE 705

Query: 348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE 407
           L +L     A      E   + +    +R E   +  +   L  +++A   AI    E E
Sbjct: 706 LLELEAMSMA-----VESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760

Query: 408 RFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTNGPARLEFGKDRE 467
           R  +      E EL      ++L   KA + A   A     +      G  R       E
Sbjct: 761 RVKKV----REMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816

Query: 468 FSAK 471
              K
Sbjct: 817 MQVK 820

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 280 CVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED 339
           C + D     + K+      + ++ LED  HQ++ + +  KQ  +A+           + 
Sbjct: 23  CGIADFLSTYQTKVD-----KDLQSLEDILHQVENKTSEVKQLIKAI-----------QL 66

Query: 340 MQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTA 399
               +      + +      + M E I   +          T    ++ L     + +  
Sbjct: 67  TYNPDESSKPNMIDAATLKSRKMLEEIMKYE------ASILTHDSSIRYLQEIYNSNNQK 120

Query: 400 IRKLEEKERFLQTVLTNAEKELHLRNQAM 428
           I  L+EK   L+       K+    +   
Sbjct: 121 IVNLKEKVAQLEAQCQEPCKDTVQIHDIT 149

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Length = 107

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 18/110 (16%)

Query: 301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFK 360
           ++ Q +    Q Q  ++  KQ  E  +NE +   +      +            D   +K
Sbjct: 6   QLAQFQQLQQQAQ-AISVQKQTVEMQINETQKALEELSRAAD------------DAEVYK 52

Query: 361 ----LMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEK 406
               ++    K     +L +E+ +TL+ + + +  Q E +   +++++  
Sbjct: 53  SSGNILIRVAKDELTEEL-QEKLETLQLREKTIERQEERVMKKLQEMQVN 101

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 21/134 (15%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 284 DSKRDERKKL-ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQE 342
           +      K + + + A+    QL++  + L+++++    E + L  ++    +     +E
Sbjct: 20  EQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 79

Query: 343 QNSRLLQQLRE-----KDDANFKLMTERIKSNQLHKLAREEKDTLRE---QVQALSLQIE 394
           +  +L +++ +      D+AN  +   R +   +  L +   + LRE    +  L+LQ++
Sbjct: 80  EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLK 139

Query: 395 AMHTAIRKLEEKER 408
            +   +  L+ +  
Sbjct: 140 NLKKVMHSLDNEST 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.82
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.78
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.75
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.75
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.68
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.6
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.59
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.59
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.56
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.54
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.54
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.52
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.49
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.48
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.47
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.47
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.45
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.43
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.43
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.42
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.42
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.4
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.39
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.37
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.37
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.35
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.34
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.34
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.34
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.33
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.32
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.32
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.32
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.31
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.31
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.29
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.26
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.26
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.24
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.23
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.22
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.2
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.2
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.18
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.17
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.16
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.15
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.12
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.12
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.11
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.1
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.09
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.09
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.05
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.03
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.02
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.99
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	97.97
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.96
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.94
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.9
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.89
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.85
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.77
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.65
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.61
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.54
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.47
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.45
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.44
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.37
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.21
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.03
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.95
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.92
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.89
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.83
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.66
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.59
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.24
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.04
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	95.98
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.97
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	95.9
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.68
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.53
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	95.38
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.3
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.19
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.01
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.63
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.54
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.49
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	94.45
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.31
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	94.19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.17
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	94.1
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	93.2
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.09
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.85
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	92.4
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.33
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.27
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	92.08
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	92.01
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	91.61
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	91.53
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.52
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	91.49
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.27
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	90.92
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.9
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.42
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	90.34
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	90.2
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.95
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.83
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	89.65
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	89.13
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	88.81
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.72
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	88.43
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	88.28
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	87.81
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.65
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	87.09
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	86.98
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	86.91
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	86.59
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.05
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	85.83
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	85.81
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	85.23
2xs1_A	704	Programmed cell death 6-interacting protein; prote	84.43
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	84.31
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	84.1
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	83.94
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	83.34
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	82.97
4fla_A	152	Regulation of nuclear PRE-mRNA domain-containing 1	82.93
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.56
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	82.41
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	82.37
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.19
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	82.14
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	81.59
3nw0_A	238	Non-structural maintenance of chromosomes element	81.36
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	81.25
3qwe_A	279	GMIP, GEM-interacting protein; structural genomics	81.19
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	81.19

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.82  E-value=1.8e-09  Score=82.18  Aligned_cols=48  Identities=23%  Similarity=0.438  Sum_probs=42.2

Q ss_pred             ccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797        467 EFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       467 e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl  515 (517)
                      .+.|+||.+.+++            |||+||..||++|++. ..+||.|++  ...|++++||
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence            5789999985431            9999999999999976 779999999  8899999997

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.78  E-value=2.1e-08  Score=88.93  Aligned_cols=39  Identities=13%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|+||.+.+.+     |||.||..||..|+.. ...||.|++
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~   95 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRK   95 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCC
T ss_pred             ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCC
Confidence            56889999999888     9999999999999864 789999998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.75  E-value=4.6e-09  Score=81.34  Aligned_cols=50  Identities=8%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             ccccccccc-cccc---------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797        467 EFSAKFVNF-RRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG  516 (517)
Q Consensus       467 e~kC~iC~~-r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt  516 (517)
                      ++.|+||.+ .+++         |||+||..||++++.....+||.|++  ..+|++++++.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~   64 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE   64 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence            578999999 3222         99999999999998776789999999  89999988764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.75  E-value=3e-09  Score=82.84  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=42.6

Q ss_pred             cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797        466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl  515 (517)
                      .++.|+||.+.+.+            |||+||..||++|+.. ..+||.|+.  ..+|++++||
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l   71 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI   71 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeeccC
Confidence            56889999985421            9999999999999976 579999999  8999999997

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=8.9e-09  Score=79.95  Aligned_cols=45  Identities=11%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCc
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDY  510 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv  510 (517)
                      .++.|+||.+.+++     |||+||..||++|+.....+||.|++  ..+|+
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            67899999998887     99999999999999766789999999  55554

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.60  E-value=1.5e-08  Score=85.35  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=44.8

Q ss_pred             hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEee
Q psy10797        460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLY  514 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIy  514 (517)
                      .+.++ .++.|+||.+.+++      |||.||..||..|+......||.|+.  ..+|+.+.+
T Consensus        16 ~~~l~-~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~   77 (100)
T 3lrq_A           16 VESIA-EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR   77 (100)
T ss_dssp             HHHHH-HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred             cccCC-CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence            34444 67999999998776      99999999999999876579999999  777776654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=1.4e-08  Score=79.70  Aligned_cols=46  Identities=22%  Similarity=0.221  Sum_probs=39.6

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhh--hccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET--RQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t--R~RKCP~C~~--~~~Dv~  511 (517)
                      ..+.|+||.+.+++     |||+||..||..|++.  +..+||.|++  ..+|++
T Consensus        19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r   73 (73)
T 2ysl_A           19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR   73 (73)
T ss_dssp             CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred             cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence            67899999998888     9999999999999973  5679999999  666653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.59  E-value=2.1e-08  Score=79.91  Aligned_cols=47  Identities=11%  Similarity=0.054  Sum_probs=40.7

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .++.|+||.+.+++     |||+||..||.+|+.....+||.|+.  ...|+.+
T Consensus         7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~   60 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence            56899999998888     99999999999999876889999999  5556543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=3.2e-08  Score=78.17  Aligned_cols=50  Identities=14%  Similarity=0.188  Sum_probs=40.9

Q ss_pred             hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      ++.++ ..+.|+||.+.+++      |||+||..||++|+.. +.+||.|++  ...|..
T Consensus         9 ~~~~~-~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A            9 LSELT-PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCCCC-GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC
T ss_pred             HhhcC-CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc
Confidence            34444 67899999998776      9999999999999965 689999999  555543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2.6e-08  Score=76.47  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhh--hccCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET--RQRKCPKC  503 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t--R~RKCP~C  503 (517)
                      .++.|+||.+.+++     |||+||..||++|++.  +.++||.|
T Consensus        19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            67899999998888     9999999999999985  56799998

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.54  E-value=4.7e-08  Score=77.86  Aligned_cols=49  Identities=16%  Similarity=0.274  Sum_probs=42.0

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhh-----ccCCCCCCC--CCCCceEee
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETR-----QRKCPKCNA--KANDYHRLY  514 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR-----~RKCP~C~~--~~~Dv~rIy  514 (517)
                      ..+.|+||.+.+++     |||.||..||..++...     ..+||.|+.  ...|+.+-+
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~   78 (85)
T 2ecw_A           18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL   78 (85)
T ss_dssp             TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred             cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence            67899999998877     99999999999999872     679999999  667776644

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.52  E-value=3.4e-08  Score=85.66  Aligned_cols=40  Identities=18%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|+||.+.+.+     |||.||..||..|+......||.|+.
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~   95 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRY   95 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCc
Confidence            67899999998887     99999999999999877779999999

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=5.6e-08  Score=77.40  Aligned_cols=49  Identities=12%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhh-----hccCCCCCCC--CCCCceEee
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET-----RQRKCPKCNA--KANDYHRLY  514 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t-----R~RKCP~C~~--~~~Dv~rIy  514 (517)
                      ..+.|+||.+.+++     |||.||..|++.++..     +..+||.|+.  ...|+.+-+
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~   78 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR   78 (85)
T ss_dssp             CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred             CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence            67899999998877     9999999999999876     2679999999  666765543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.48  E-value=2.7e-08  Score=79.79  Aligned_cols=51  Identities=18%  Similarity=0.228  Sum_probs=43.7

Q ss_pred             hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG  516 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt  516 (517)
                      ++.++ .+..|+||.+.+++     |||. ||..|+..+     ++||.|++...++.+||++
T Consensus        18 ~~~~~-~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           18 LRRLQ-EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             HHHHH-HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC-
T ss_pred             HhcCc-cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcEEEeeC
Confidence            44444 67899999999988     9999 999999876     7999999988889999985

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.47  E-value=0.00011  Score=71.61  Aligned_cols=128  Identities=19%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHH
Q psy10797        301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT--ERIKSNQLHKLAREE  378 (517)
Q Consensus       301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a--EK~KAdQKyfaamre  378 (517)
                      +|..++..+..|...++.++.+.+.+...+..+....+++..+..++=.++.+...++.+.-.  ..++.+--|.++.++
T Consensus        19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kE   98 (256)
T 3na7_A           19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE   98 (256)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            444445555555555555555556666666666666666666655555555444444433211  224445556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        379 KDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       379 KdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal  428 (517)
                      .+.+..++..+...+....+.+..+++....+...+..++.++...+..+
T Consensus        99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~  148 (256)
T 3na7_A           99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV  148 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666555555555555554455555555555554444433

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.47  E-value=1.5e-08  Score=80.35  Aligned_cols=47  Identities=11%  Similarity=0.181  Sum_probs=40.3

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhh------ccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETR------QRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR------~RKCP~C~~--~~~Dv~r  512 (517)
                      .++.|+||.+.+++     |||.||..||..|+...      ..+||.|+.  ...|+.+
T Consensus        11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~   70 (79)
T 2egp_A           11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA   70 (79)
T ss_dssp             CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred             cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence            67899999998888     99999999999998763      679999999  6566654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=6.4e-08  Score=78.07  Aligned_cols=48  Identities=13%  Similarity=0.227  Sum_probs=39.9

Q ss_pred             cccccccccccccc---------cccccchhhHHHHHhhh--ccCCCCCCC--CCCCceEe
Q psy10797        466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETR--QRKCPKCNA--KANDYHRL  513 (517)
Q Consensus       466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR--~RKCP~C~~--~~~Dv~rI  513 (517)
                      ..+.|+||.+.+.+         |||.||..||+.|+...  ..+||.|++  ...|+..+
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l   74 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL   74 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred             CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence            66899999987654         99999999999999864  479999999  66666544

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.43  E-value=0.00023  Score=65.08  Aligned_cols=12  Identities=0%  Similarity=-0.421  Sum_probs=4.5

Q ss_pred             hhhHHHHHHhHh
Q psy10797        246 AFQMSFYKSRWF  257 (517)
Q Consensus       246 ~~~~~al~~~l~  257 (517)
                      ..++..|+..+.
T Consensus        19 ~~~~~~l~~~l~   30 (284)
T 1c1g_A           19 LDRADEAEADKK   30 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=7.3e-08  Score=72.18  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=34.1

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhh--hccCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYET--RQRKCPKC  503 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~t--R~RKCP~C  503 (517)
                      ..+.|+||.+.+++     |||+||..||++|+..  +..+||.|
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            67899999998888     9999999999999765  67899998

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.42  E-value=1.2e-07  Score=75.53  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhhc-cCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQ-RKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~-RKCP~C~~  505 (517)
                      .++.|+||.+.+++      |||.||..||++|+.... +.||.|++
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~   60 (74)
T 2yur_A           14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ   60 (74)
T ss_dssp             GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCC
T ss_pred             CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCC
Confidence            67999999998877      999999999999998643 69999999

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.42  E-value=1e-07  Score=80.25  Aligned_cols=47  Identities=11%  Similarity=0.209  Sum_probs=39.7

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhc--cCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQ--RKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~--RKCP~C~~--~~~Dv~r  512 (517)
                      ..+.|+||.+.+++     |||.||..||..|+....  .+||.|+.  ...++.+
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~   75 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE   75 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred             CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence            56899999998887     999999999999997543  48999999  6666654

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.40  E-value=0.00097  Score=60.89  Aligned_cols=11  Identities=18%  Similarity=0.099  Sum_probs=4.4

Q ss_pred             hHHHHHHhHhh
Q psy10797        248 QMSFYKSRWFD  258 (517)
Q Consensus       248 ~~~al~~~l~~  258 (517)
                      ++.+++..|+.
T Consensus         7 ~~~~l~~~~~~   17 (284)
T 1c1g_A            7 KMQMLKLDKEN   17 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhHHH
Confidence            33444444433

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=9.7e-08  Score=76.49  Aligned_cols=51  Identities=18%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG  516 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt  516 (517)
                      +++++ .++.|+||.+++++     |||+ ||..|++     +.++||.|+....++.+||++
T Consensus        19 ~~~~~-~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~-----~~~~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           19 LRRLQ-EEKLCKICMDRNIAIVFVPCGHLVTCKQCAE-----AVDKCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             HHHHH-HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHH-----HCSBCTTTCCBCCCCCBCCCC
T ss_pred             HHcCC-CCCCCCcCCCCCCCEEEecCCCHHHHHHHhh-----CCCCCccCCceecCcEEEecC
Confidence            34443 66899999999988     9999 9999995     348999999977888999975

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.37  E-value=1.3e-07  Score=80.90  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=42.8

Q ss_pred             cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797        466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl  515 (517)
                      ..+.|++|.+.+++            |||+||..||++|++. ...||.|+.  ..+|++++||
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~  133 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI  133 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence            55789999885432            9999999999999976 579999999  9999999997

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.37  E-value=1.3e-07  Score=78.76  Aligned_cols=46  Identities=13%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .++.|+||.+.+++      |||.||..||..|+.. ..+||.|+.  +..|+.+
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~   74 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKN   74 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEE
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCc
Confidence            67899999998776      9999999999999975 579999999  5556554

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.35  E-value=1.1e-06  Score=82.76  Aligned_cols=47  Identities=4%  Similarity=-0.142  Sum_probs=40.5

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+||.+-+++     |||+||..||..++......||.|+.  ...|+.+
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p  158 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP  158 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred             HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence            77999999999999     99999999999999864457999999  5556654

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.34  E-value=1.5e-07  Score=80.60  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=40.4

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      .++.|+||.+.+++     |||+||..||.+|+......||.|+.  +..|+.
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   74 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence            56899999998888     99999999999999876789999999  555654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.34  E-value=2.1e-07  Score=79.62  Aligned_cols=50  Identities=24%  Similarity=0.471  Sum_probs=42.7

Q ss_pred             cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797        466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG  516 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt  516 (517)
                      .++.|+||.+.+++            |||+||..||++|++. ..+||.|++  ...++.++|+.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l~i~   69 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYIG   69 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEECBCS
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccccccC
Confidence            46889999986532            9999999999999976 569999999  88899998874

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.34  E-value=2.2e-07  Score=80.19  Aligned_cols=46  Identities=13%  Similarity=0.184  Sum_probs=40.0

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      ..+.|+||.+.+++     |||+||..||..|+.....+||.|+.  ..+|+.
T Consensus        17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   69 (118)
T 3hct_A           17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF   69 (118)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred             CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc
Confidence            67899999998887     99999999999999887679999999  555544

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.33  E-value=1.6e-07  Score=85.09  Aligned_cols=40  Identities=20%  Similarity=0.382  Sum_probs=36.8

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|+||.+.+.+      |||+||..||..|+......||.|+.
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~   98 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK   98 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCC
Confidence            66899999998877      99999999999999876789999998

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.32  E-value=2.8e-07  Score=75.51  Aligned_cols=40  Identities=18%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~C~~  505 (517)
                      .++.|+||.+.+++      |||.||..||..++... ...||.|+.
T Consensus        12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~   58 (92)
T 3ztg_A           12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ   58 (92)
T ss_dssp             TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCC
T ss_pred             cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCC
Confidence            67899999998877      99999999999999653 369999999

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.32  E-value=3e-07  Score=71.92  Aligned_cols=50  Identities=12%  Similarity=0.272  Sum_probs=43.4

Q ss_pred             cccccccccccccc-------cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797        466 REFSAKFVNFRRKS-------YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG  516 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-------CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt  516 (517)
                      ....|.||.+++++       |||+ ||..|+..+.+ +..+||.|++...++.+||++
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCEEEEEEEC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhceEEEecC
Confidence            45689999999886       9999 99999998764 467999999988899999974

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.32  E-value=3e-07  Score=72.14  Aligned_cols=50  Identities=16%  Similarity=0.248  Sum_probs=43.7

Q ss_pred             cccccccccccccc-------cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797        466 REFSAKFVNFRRKS-------YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG  516 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-------CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt  516 (517)
                      .+..|.||.+++++       |||+ ||.+|+..+.. +..+||.|++...++.+||++
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhceEeeecC
Confidence            45689999998887       9999 89999998875 467999999988899999985

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.31  E-value=2.7e-07  Score=78.20  Aligned_cols=44  Identities=14%  Similarity=0.201  Sum_probs=37.8

Q ss_pred             hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ++.+. .++.|+||.+.+++      |||.||..||..|+.. ...||.|+.
T Consensus         9 ~~~~~-~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~   58 (108)
T 2ckl_A            9 ITELN-PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDV   58 (108)
T ss_dssp             HHHHG-GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCC
T ss_pred             hhccC-CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCc
Confidence            33444 67999999998877      9999999999999976 589999999

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=6.5e-08  Score=76.18  Aligned_cols=45  Identities=9%  Similarity=0.049  Sum_probs=37.9

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      ..+.|+||.+.+++     |||+||..||+.|+.. ..+||.|+.  ...|+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~   65 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLD   65 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHS
T ss_pred             CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhcc
Confidence            56899999998888     9999999999999865 579999998  444443

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=4.1e-07  Score=73.13  Aligned_cols=39  Identities=10%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..+.|+||.+.+++     |||+||..||..|+.. ...||.|+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~   57 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQ   57 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCC
T ss_pred             CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCc
Confidence            56899999998888     9999999999999965 679999999

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.26  E-value=3.5e-07  Score=82.97  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=36.9

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..+.|+||.+.+++     |||.||..||..++......||.|+.
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~  121 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRH  121 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred             cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCc
Confidence            66899999998888     99999999999999876669999999

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.26  E-value=3.2e-07  Score=73.02  Aligned_cols=44  Identities=11%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC--CCCCc
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDY  510 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv  510 (517)
                      ..+.|+||.+.+.+        |+|+||..||..|+.. ..+||.|++  ...++
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCS
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCccc
Confidence            56799999886653        9999999999999975 579999999  44443

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.24  E-value=2.5e-07  Score=75.61  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=43.3

Q ss_pred             hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecCC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLGS  517 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt~  517 (517)
                      ++.++ .+..|+||.+++++     |||+ ||..|+..+     ++||.|+.....+.+||+++
T Consensus        12 ~~~l~-~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p~   69 (79)
T 2yho_A           12 LRKLK-EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLPT   69 (79)
T ss_dssp             HHHHH-HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCTT
T ss_pred             HHcCC-CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEEeCc
Confidence            44444 56789999999999     9999 999999754     59999999777789999863

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.23  E-value=5.8e-07  Score=69.57  Aligned_cols=40  Identities=10%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNAKA  507 (517)
Q Consensus       467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~~~  507 (517)
                      ...|+||.+.+++      |||.||..|+..|++. ...||.|++..
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~   50 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV   50 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCC
T ss_pred             CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhh
Confidence            4689999998766      9999999999999975 57999999833

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.22  E-value=5e-07  Score=67.04  Aligned_cols=38  Identities=11%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             ccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      +..|+||.+.+++         |||+||..||++|+... ..||.|++
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~   51 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSG   51 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCC
Confidence            5689999987633         99999999999999875 89999997

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=4.6e-07  Score=69.69  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             cccccccccccccc------------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS------------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..+.|+||.+.+++            |||+||..||+.|+.. ...||.|+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~   64 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRK   64 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCC
T ss_pred             CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCC
Confidence            56889999985432            9999999999999976 679999997

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.20  E-value=1.6e-07  Score=80.29  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=36.8

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|+||.+.+.+     |||.||..||..|+......||.|+.
T Consensus        14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~   58 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRR   58 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCC
T ss_pred             CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCc
Confidence            56899999998877     99999999999999877789999998

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.18  E-value=3.4e-07  Score=78.88  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      ++.++ .++.|+||.+.+++      |||.||..||..++.   .+||.|+.  ...|+.+
T Consensus        16 ~~~l~-~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~   72 (117)
T 1jm7_B           16 LDRLE-KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKI   72 (117)
T ss_dssp             HHHHH-HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCC
T ss_pred             HHhch-hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccc
Confidence            44444 67999999998777      999999999999986   78999999  5556543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=1.4e-07  Score=73.68  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             cccccccccccccc----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ..+.|+||.+.+++    |||+||..||..|+. +...||.|+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~   56 (70)
T 2ecn_A           14 DEEECCICMDGRADLILPCAHSFCQKCIDKWSD-RHRNCPICRL   56 (70)
T ss_dssp             CCCCCSSSCCSCCSEEETTTEEECHHHHHHSSC-CCSSCHHHHH
T ss_pred             CCCCCeeCCcCccCcccCCCCcccHHHHHHHHH-CcCcCCCcCC
Confidence            56899999998877    999999999999987 5789999998

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=6.8e-07  Score=70.40  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=34.2

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .+..|+||.+.+.+        |+|+||..||+.|+.. +..||.|++
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~   60 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNM   60 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCC
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCc
Confidence            56789999997654        9999999999999976 469999999

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=70.06  Aligned_cols=52  Identities=12%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG  516 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt  516 (517)
                      .|.++.....|.||.+++++     |||+ ||..|++     +.++||.|+....++.+||..
T Consensus         8 ~e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~-----~~~~CP~CR~~i~~~~~i~~~   65 (68)
T 2ea5_A            8 VEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK-----YFQQCPMCRQFVQESFALSGP   65 (68)
T ss_dssp             CCCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH-----HCSSCTTTCCCCCCEECCCSS
T ss_pred             ccccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHh-----cCCCCCCCCcchhceEEeecC
Confidence            34444456889999999999     9999 9999998     358999999988889999864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.12  E-value=1.1e-06  Score=72.41  Aligned_cols=46  Identities=9%  Similarity=-0.075  Sum_probs=40.2

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+||.+-+++     |||.||..||..++.. ..+||.|+.  ...|+.+
T Consensus        13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~p   65 (85)
T 2kr4_A           13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEP   65 (85)
T ss_dssp             TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEE
T ss_pred             hheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcch
Confidence            67999999999998     9999999999999985 789999999  5555544

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.12  E-value=1.1e-06  Score=68.34  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=33.4

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ....|+||.+.+.+        |||+||..||..|+.. ...||.|++
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~   59 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRV   59 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCS
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCc
Confidence            55789999876542        9999999999999976 568999998

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.11  E-value=4.5e-07  Score=81.54  Aligned_cols=44  Identities=9%  Similarity=0.075  Sum_probs=38.6

Q ss_pred             hcccccccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        461 EFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       461 EKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      +.+. .+|.|+||.+.+++     |||.||..||..|+.....+||.|+.
T Consensus        26 ~~l~-~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~   74 (141)
T 3knv_A           26 TKLE-AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVH   74 (141)
T ss_dssp             GGCC-GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHH
T ss_pred             ccCC-cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCC
Confidence            4554 78999999998877     99999999999999876669999987

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.10  E-value=1.3e-06  Score=79.39  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=40.7

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      ..|.|+||.+.+++     |||+||..||.+|+.....+||.|+.  +.+|+.+
T Consensus        17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   70 (170)
T 3hcs_A           17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP   70 (170)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence            67999999998887     99999999999999877679999999  6555543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.09  E-value=3.4e-06  Score=80.36  Aligned_cols=46  Identities=4%  Similarity=-0.138  Sum_probs=39.4

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      ..|.|+||.+-+++     |||+||..||..++......||.|+.  ...|+.
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~  259 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI  259 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred             cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence            56999999999988     99999999999999865556999999  555554

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.09  E-value=9.3e-07  Score=65.70  Aligned_cols=39  Identities=10%  Similarity=0.195  Sum_probs=33.3

Q ss_pred             cccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ....|+||.+.+.+         |||+||..||++|++. ...||.|++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~   51 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRL   51 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCC
Confidence            35689999987544         9999999999999976 679999986

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=1.4e-06  Score=68.99  Aligned_cols=39  Identities=18%  Similarity=0.286  Sum_probs=33.8

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ....|+||.+.+.+        |+|+||..||+.|+.. +..||.|++
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~   68 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRA   68 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCC
Confidence            45789999986554        9999999999999976 579999998

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.05  E-value=1.8e-06  Score=73.67  Aligned_cols=46  Identities=7%  Similarity=-0.077  Sum_probs=40.6

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+||.+-+++     |||.||..||..|+.. ..+||.|+.  ...|+.+
T Consensus        28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~p   80 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEP   80 (100)
T ss_dssp             TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEE
T ss_pred             HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceE
Confidence            67999999999999     9999999999999974 789999999  6666654

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.03  E-value=1.4e-06  Score=72.07  Aligned_cols=39  Identities=13%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .+..|+||.+.+.+        |||.||..||+.|+.. ...||.|+.
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~   85 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRC   85 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCC
T ss_pred             CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCc
Confidence            45789999976544        9999999999999975 679999997

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.02  E-value=2e-05  Score=91.46  Aligned_cols=118  Identities=14%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLRE  353 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~E  353 (517)
                      +++.+++++++.+.+.+...  .++..++..++.++++++.++.....+...+..+++.+...+++++++...+-.++.+
T Consensus       861 ~L~~eL~el~~~L~~le~~l--~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee  938 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAEL--KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE  938 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555554444433333  3455666666666666666666555555555556666666666666665555555555


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        354 KDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       354 kED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      .++.+..+..++.+.++....+.++.+.++.++..++...
T Consensus       939 ~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~  978 (1184)
T 1i84_S          939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK  978 (1184)
T ss_dssp             HHHC------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554444444444444444444443333

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.00  E-value=2.4e-06  Score=89.18  Aligned_cols=46  Identities=17%  Similarity=0.292  Sum_probs=38.7

Q ss_pred             cccccccccccc-----cccccchhhHHHHHhhhccCCCCCCCCCCCceEe
Q psy10797        468 FSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRL  513 (517)
Q Consensus       468 ~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rI  513 (517)
                      ..|+||.+.+++     |||+||..|+..|+..+.++||.|+........|
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            689999999888     9999999999999987789999999933333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.99  E-value=1e-05  Score=93.79  Aligned_cols=91  Identities=19%  Similarity=0.186  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      .++..++.++++|+.+++.++++.+.+..++..+.+..+++......+-.++.+.++...++..|+....++...+.++.
T Consensus       913 ~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el  992 (1184)
T 1i84_S          913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI  992 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444445555555555555544444444444444


Q ss_pred             HHHHHHHHHHH
Q psy10797        380 DTLREQVQALS  390 (517)
Q Consensus       380 daLe~Evk~Lk  390 (517)
                      +.++.++..+.
T Consensus       993 ~~lee~l~~l~ 1003 (1184)
T 1i84_S          993 LIMEDQNNKLT 1003 (1184)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHH
Confidence            44443333333

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=97.97  E-value=3.5e-06  Score=71.56  Aligned_cols=46  Identities=7%  Similarity=-0.032  Sum_probs=40.7

Q ss_pred             cccccccccccccc-----cc-cccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YF-FVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----Cg-HvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+||.+-+++     || |.||..||..|+.. ...||.|+.  ...|+.+
T Consensus        21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~p   74 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRP   74 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEE
T ss_pred             HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceE
Confidence            67999999999999     99 99999999999986 789999999  6666654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.96  E-value=3.9e-06  Score=68.74  Aligned_cols=40  Identities=10%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             ccccccccccccc-c--------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRK-S--------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K-~--------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|+||.+... +        |||.||..|+...++.....||.|++
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~   58 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK   58 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCC
T ss_pred             cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCC
Confidence            5689999999763 2        99999999999988766789999999

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.94  E-value=1.7e-06  Score=65.73  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .++.|+||.+.+++     |||.||..||..    ...+||.|++
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~   45 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQA   45 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCS
T ss_pred             cCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCc
Confidence            46889999998887     999999999987    3679999999

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.90  E-value=4e-06  Score=71.14  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             ccccccccccccc----------------------c-cccccchhhHHHHHh----hhccCCCCCCC
Q psy10797        466 REFSAKFVNFRRK----------------------S-YFFVEFLDCLRTRYE----TRQRKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K----------------------~-CgHvFC~~CIq~rl~----tR~RKCP~C~~  505 (517)
                      .+..|+||.+.+.                      . |+|+||..||..|+.    .+...||.|++
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~   90 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT   90 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence            4468999988641                      1 999999999999996    34679999998

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.89  E-value=2.3e-06  Score=87.66  Aligned_cols=51  Identities=24%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             hhcccccccccccccccccc-----cccc-cchhhHHHHHhhhccCCCCCCCCCCCceEeecC
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFV-EFLDCLRTRYETRQRKCPKCNAKANDYHRLYLG  516 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHv-FC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIylt  516 (517)
                      +++++ .+..|+||.+.+++     |||. ||..|+..+     ++||.|+.....+.+||++
T Consensus       289 ~~~l~-~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          289 LRRLQ-EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             HHHHH-TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEEECC--
T ss_pred             HHhCc-CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCeEEeecC
Confidence            44444 67899999999998     9999 999999865     7999999988889999975

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.85  E-value=2.4e-05  Score=78.11  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=39.3

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhh-ccCCCC--CCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPK--CNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~--C~~--~~~Dv~  511 (517)
                      .+++|+||...+++      |||.||..||..+++.. ..+||.  |++  ...|+.
T Consensus       180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~  236 (267)
T 3htk_C          180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV  236 (267)
T ss_dssp             CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred             eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence            56899999998888      99999999999999763 468999  999  666654

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=1.1e-05  Score=67.38  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             cccccccccccccc------cccccchhhHHHHHhhh-----ccCCCC--CCC
Q psy10797        466 REFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-----QRKCPK--CNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-----~RKCP~--C~~  505 (517)
                      .+|.|+||.+-+++      |||+||..||..|+...     ..+||.  |+.
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~   58 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH   58 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence            46899999998888      99999999999999864     359999  873

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.65  E-value=0.014  Score=56.84  Aligned_cols=134  Identities=12%  Similarity=0.129  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--H
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL--A  375 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa--a  375 (517)
                      .+-.|..+..++.+|+..+..+..+.+.|..++..+...+...+.....+-.++...+..+..+..-.-|..++...  -
T Consensus         9 ~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~   88 (256)
T 3na7_A            9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS   88 (256)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            34667788888999999998888888888888888888888888888888888888777776664322222222222  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        376 REEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLN  431 (517)
Q Consensus       376 mreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~  431 (517)
                      .++-++|..|+..++..+....+.|..+.+.-..+...+..++.++..++..++..
T Consensus        89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~  144 (256)
T 3na7_A           89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL  144 (256)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677776666666666666666666655556666666666666665555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.61  E-value=0.0012  Score=76.40  Aligned_cols=121  Identities=14%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT  381 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKda  381 (517)
                      ...+|.++++|+.+++..+++...|..++..+...+++   ....+-.++.+++    ++..|+.+++++-..+.++.+.
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~---e~~~L~~~l~~le----~~~~e~~~~~~~v~~L~~e~~~  995 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST---ETEKLRSDVERLR----MSEEEAKNATNRVLSLQEEIAK  995 (1080)
T ss_dssp             ----------------------------CHHHHHHHHH---HHHHHHHTHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777776666655555544433322221   1111111111111    1223333344444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        382 LREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       382 Le~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                      ++.+++.+....+...+.+.++++   .|+.++.+++++.+.+++.++..+
T Consensus       996 l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          996 LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444444444444444443   344566666666665555555443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-05  Score=64.77  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |+|+|+..||++|+.+ +..||.|++
T Consensus        48 C~H~FH~~Ci~~Wl~~-~~~CP~CR~   72 (81)
T 2ecl_A           48 CNHSFHNCCMSLWVKQ-NNRCPLCQQ   72 (81)
T ss_dssp             TSCEEEHHHHHHHTTT-CCBCTTTCC
T ss_pred             CCCccChHHHHHHHHh-CCCCCCcCC
Confidence            9999999999999976 569999998

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.47  E-value=0.0037  Score=72.48  Aligned_cols=117  Identities=17%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      +++..+|++..+|+.++...   .+.+..|++.+.+..++++.+    ..++.+.+..+..|..|-.+.+..+..+.+++
T Consensus       935 ~rL~~~e~~n~~L~~~~~~~---~~~~~~e~~~L~~~l~~le~~----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A          935 RKIDEQNKEYKSLLEKMNNL---EITYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp             ----------------CHHH---HHHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444555443322   234555666665555555443    22233444555556566666677788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQ  426 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkq  426 (517)
                      +.++.+.+.++.   ...+.+..|++....|++++.+++..+...++
T Consensus      1008 ~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1008 KTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877774   34477888888777788888888766554443

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.45  E-value=5.8e-05  Score=59.10  Aligned_cols=49  Identities=6%  Similarity=-0.065  Sum_probs=42.6

Q ss_pred             ccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEeecC
Q psy10797        467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYLG  516 (517)
Q Consensus       467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIylt  516 (517)
                      .|.|++|.+-.+|      |||+||..||++|+.. +.+||.+|.  ...|+.+++.+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~~   59 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVPS   59 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECccC
Confidence            3789999998887      8999999999999975 678999999  88999888754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.44  E-value=4.7e-05  Score=63.04  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             cccccccccccccc--------cccccchhhHHHHHhhh-------ccCCCC--CCC
Q psy10797        466 REFSAKFVNFRRKS--------YFFVEFLDCLRTRYETR-------QRKCPK--CNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR-------~RKCP~--C~~  505 (517)
                      +.+.|+||.+..+.        |||.||.+|+...++..       .-+||.  |+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~   60 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK   60 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence            35789999986543        99999999999999863       248999  987

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.38  E-value=7.2e-05  Score=65.00  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=38.3

Q ss_pred             cccccccccc------cccccchhhHHHHHhhhccCCCCCCCCCCCceEee
Q psy10797        470 AKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRLY  514 (517)
Q Consensus       470 C~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rIy  514 (517)
                      |+.|....+.      |.|+||.+|+..+.+.+...||.|+...++|..+-
T Consensus         4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred             cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence            7778777666      99999999999998888899999999777776653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.37  E-value=0.02  Score=72.88  Aligned_cols=137  Identities=18%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKL--  374 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfa--  374 (517)
                      |+...++.+++++++++.+|+.++++.+.++.+|..-.+.-++-++.....-.++.+.++.+.+   .|..++.....  
T Consensus      1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~---~k~~~e~dL~~A~ 2007 (3245)
T 3vkg_A         1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAV---QKVKAYADLEKAE 2007 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcC
Confidence            3444555555555555555666666777777776655444444333332222222222221111   12222222221  


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 ----AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAI  436 (517)
Q Consensus       375 ----amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~  436 (517)
                          ++++...+++++...++++++..+.+..++++-..|+.+.+.+.+|...++..++.-++++.
T Consensus      2008 Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A         2008 PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22344444444444444444444444444444444444444444444444444444333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.33  E-value=0.081  Score=50.50  Aligned_cols=93  Identities=17%  Similarity=0.246  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEK  379 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreK  379 (517)
                      +++..++.+..+-+..-..++++   |-.||+..++--.+++.+|.++-.++.+.-++......|          +....
T Consensus        24 q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~   90 (189)
T 2v71_A           24 QSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ----------SYKQV   90 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence            44455555555555544444444   456777777777777777776666555554433333222          22234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        380 DTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       380 daLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      ..|+.++..|+...+.....|..|+-
T Consensus        91 ~~Lq~el~~l~~~~~~l~~~ireLEq  116 (189)
T 2v71_A           91 SVLEDDLSQTRAIKEQLHKYVRELEQ  116 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666666666555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.21  E-value=0.0041  Score=65.62  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        415 TNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVII  452 (517)
Q Consensus       415 s~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel  452 (517)
                      ..++++...++...+..++++.|+.++.+.++.++.++
T Consensus       540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333433333334443444444445555555544433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.03  E-value=0.11  Score=48.93  Aligned_cols=121  Identities=17%  Similarity=0.230  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhhHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKL-----ADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLL  348 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqkl-----ad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrkl  348 (517)
                      .|+++|.++++.++.+....     ...|..-.++.+|..+.+|+.++..++..-.+|-.|+-.+..+++.-..--.+--
T Consensus        10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~s   89 (168)
T 3o0z_A           10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDS   89 (168)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777766543211     2445555666666666677777777777766666666666666654222211111


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        349 QQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELH  422 (517)
Q Consensus       349 qqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~  422 (517)
                      .-++                            .++..+..|..-++.......+++...+.|+.++.++||+-+
T Consensus        90 e~~~----------------------------elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a  135 (168)
T 3o0z_A           90 EMIG----------------------------DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN  135 (168)
T ss_dssp             HHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111                            233355555555666666677777777778888888888644

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.95  E-value=0.032  Score=53.23  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy10797        304 QLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR  383 (517)
Q Consensus       304 ~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe  383 (517)
                      .+|.+++.+.+++..++.....|-.|++..-.=|+..+.+..+   ++..+++.+..|..++-....+...+--..|.++
T Consensus        46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE  122 (189)
T 2v71_A           46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE  122 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4556666666666666666667777776666555555544433   4555666666666666666666666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        384 EQVQALSLQIEAMHTAIRKLEEKERFLQTVLT  415 (517)
Q Consensus       384 ~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs  415 (517)
                      ...+.....++.......+.-|....|.+.|.
T Consensus       123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          123 RAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776666666665555545554443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.92  E-value=0.085  Score=67.32  Aligned_cols=88  Identities=7%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKE  407 (517)
Q Consensus       328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~E  407 (517)
                      .|+...++..++.+++...+-.+|.+.++++.+|       +.+|..++++|+.++.++...+..++.....|..|....
T Consensus      2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L-------~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A         2014 EEVEQLENAANELKLKQDEIVATITALEKSIATY-------KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            4455555555555555555555555555555554       567889999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10797        408 RFLQTVLTNAEKELH  422 (517)
Q Consensus       408 r~L~~kLs~lEKEL~  422 (517)
                      ....+.+..++.++.
T Consensus      2087 ~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A         2087 GRWEQQSENFNTQMS 2101 (3245)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            667777777776654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.89  E-value=0.00037  Score=60.19  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |+|.|+..||+.|+.. +..||.|++
T Consensus        73 C~H~FH~~Ci~~Wl~~-~~~CP~Cr~   97 (106)
T 3dpl_R           73 CNHAFHFHCISRWLKT-RQVCPLDNR   97 (106)
T ss_dssp             TSCEEEHHHHHHHHTT-CSBCSSSCS
T ss_pred             cCcEECHHHHHHHHHc-CCcCcCCCC
Confidence            9999999999999976 679999998

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.83  E-value=0.00018  Score=63.55  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=0.0

Q ss_pred             cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |+|.|+..||+.|+.+ +..||.|++
T Consensus        84 C~H~FH~~CI~~Wl~~-~~~CP~Cr~  108 (117)
T 4a0k_B           84 CNHAFHFHCISRWLKT-RQVCPLDNR  108 (117)
T ss_dssp             --------------------------
T ss_pred             cCceEcHHHHHHHHHc-CCcCCCCCC
Confidence            9999999999999987 579999998

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.66  E-value=0.27  Score=45.59  Aligned_cols=118  Identities=21%  Similarity=0.335  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy10797        299 MRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREE  378 (517)
Q Consensus       299 l~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamre  378 (517)
                      -.+...||.++..+|..++........|..           ..++..++..++...+....+|+.+-.....+-..+-.+
T Consensus        12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~-----------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~   80 (154)
T 2ocy_A           12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----------LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEE   80 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667777777777777755544333322           222333334456678888888888888888888888889


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        379 KDTLREQVQALSLQI-EAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQA  427 (517)
Q Consensus       379 KdaLe~Evk~Lk~Ql-ekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqa  427 (517)
                      +..++.|+-.|.+++ +..++.++.-.-.-..+..+...+++++......
T Consensus        81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~  130 (154)
T 2ocy_A           81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL  130 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998887 6666666543322223334444444444444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.59  E-value=0.076  Score=49.86  Aligned_cols=141  Identities=13%  Similarity=0.111  Sum_probs=84.3

Q ss_pred             hhhhHHHHHHhHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhc--CcHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10797        245 SAFQMSFYKSRWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKL--ADEEAMRKIKQLEDQTHQLQKQVATHKQE  322 (517)
Q Consensus       245 a~~~~~al~~~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkl--ad~Eal~rL~~lE~EieeLr~kL~s~eqe  322 (517)
                      ++++++.|+.+|..+..      -.++|.+...|+|.......+..+.+  ..-|...++..++.....|+..+..+...
T Consensus         4 ~neKi~~LekQL~E~n~------kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~   77 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEAND------LLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI   77 (168)
T ss_dssp             ------CTHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888887776554      23455666666666665554432222  23455566667776666666666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH----HHHHHHHH
Q psy10797        323 EEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLR----EQVQALSL  391 (517)
Q Consensus       323 ~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe----~Evk~Lk~  391 (517)
                      .+.=-..-...+....+++..+..+-.++...-+...|+..|+-+..-+...+.+++..++    =++++++.
T Consensus        78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~  150 (168)
T 3o0z_A           78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4444444455555666778888888887777777777777777776666666666666666    33444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.24  E-value=0.42  Score=42.35  Aligned_cols=110  Identities=15%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797        301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd  380 (517)
                      .++.++.++..|+.++...+..-.-|-.....+.+-..+++.|.+.--..+.+.++...+|              ...+.
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L--------------~~~k~   79 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL--------------IKNKI   79 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------HHHHH
Confidence            3444455555555555444444333333444444444444444433333334444433333              34444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       381 aLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      .|+.++..+...++...+....|....+.+...+.++++++..+
T Consensus        80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555433

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.04  E-value=0.0031  Score=51.83  Aligned_cols=40  Identities=13%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             cccccccccccccc-------cc-----cccchhhHHHHHhhhc-cCCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-------YF-----FVEFLDCLRTRYETRQ-RKCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-------Cg-----HvFC~~CIq~rl~tR~-RKCP~C~~  505 (517)
                      .+-.|.||.+.+.+       |.     |.|...||++|+.... +.||.|+.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~   66 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKY   66 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCC
Confidence            34679999976533       74     9999999999998764 69999998

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=95.98  E-value=0.93  Score=41.42  Aligned_cols=136  Identities=20%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy10797        309 THQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA----NFKLMTERIKSNQLHKLAREEKDTLRE  384 (517)
Q Consensus       309 ieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~----n~KL~aEK~KAdQKyfaamreKdaLe~  384 (517)
                      |++|+.-+++...+.+-.-.|++..|+-.++-|.    ||.|+.-+-..    +.+|-+|-.       .+.+-.+-.+.
T Consensus        13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqg----KVDQlqKRn~~HQKEi~~Lrae~~-------~~QRn~~K~~~   81 (167)
T 4gkw_A           13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQG----KVDQLQKRNVAHQKEIGKLRAELG-------TAQRNLEKADQ   81 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHhccHHHHHHHHHHHHHH-------HHHHhHHHHHH
Confidence            3344444444444444455566666665555433    34444333222    222322221       22222222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10797        385 QVQALSLQIEAMHTAIRKLEEKERFLQT---VLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLVIIYTN  455 (517)
Q Consensus       385 Evk~Lk~QlekQ~e~I~kLeE~Er~L~~---kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLeel~Ek  455 (517)
                      .++.-..|-+.|+--|++|.|.|.-|..   -+.++...+-.++..++..+-++.|.--.-+.|+.+-+.++++
T Consensus        82 ~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vker  155 (167)
T 4gkw_A           82 LLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEK  155 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence            3333333334455667777776655543   3455555666666666665555555444445555554444444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.97  E-value=0.07  Score=49.46  Aligned_cols=133  Identities=15%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             ceeeeecchhhhHHHHHHhHhhhhc-CCcccccccccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHH
Q psy10797        237 TLFVSICTSAFQMSFYKSRWFDFRS-LSDSASNIYGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQ  315 (517)
Q Consensus       237 ~~~~~~~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~k  315 (517)
                      +|-.-+-+|=++.+.|++.|...+. ......-|.+-+.++.+++.+....         .++...+..+..++.+=+.+
T Consensus         3 sLStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~---------~~~~~e~~~L~~~l~~E~~~   73 (154)
T 2ocy_A            3 ALSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKREL---------SDRDDEVKRLREDIAKENEL   73 (154)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHH
Confidence            3444455666777777777777665 3333223333334444444433111         11222233333333333333


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        316 VATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEA  395 (517)
Q Consensus       316 L~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qlek  395 (517)
                      -...+.+...+..|+|.+..+.                        ..|   |+..-..++++...++..+..|+.++..
T Consensus        74 R~~aE~~~~~ie~ElEeLTasL------------------------FeE---AN~MVa~ar~~~~~~e~r~~~L~~ql~e  126 (154)
T 2ocy_A           74 RTKAEEEADKLNKEVEDLTASL------------------------FDE---ANNMVADARKEKYAIEILNKRLTEQLRE  126 (154)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHH------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666665542                        222   3333345677777777777777766554


Q ss_pred             HHHHHHHHHH
Q psy10797        396 MHTAIRKLEE  405 (517)
Q Consensus       396 Q~e~I~kLeE  405 (517)
                      -..+|..+.+
T Consensus       127 ~~~~l~~lq~  136 (154)
T 2ocy_A          127 KDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=95.90  E-value=0.3  Score=41.69  Aligned_cols=87  Identities=17%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797        310 HQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL  389 (517)
Q Consensus       310 eeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L  389 (517)
                      +.|+..|..++.+...|..||+.+++-.+.+..+...+=.+...++..-.+...|...-.-.......+.++++.+....
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~   86 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA   86 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555555555444444444554444444444333334445555566666666655


Q ss_pred             HHHHHHH
Q psy10797        390 SLQIEAM  396 (517)
Q Consensus       390 k~QlekQ  396 (517)
                      +.++++.
T Consensus        87 ~~qLdkL   93 (96)
T 3q8t_A           87 QMQLDKL   93 (96)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.68  E-value=0.25  Score=42.65  Aligned_cols=70  Identities=24%  Similarity=0.449  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy10797        333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI-EAMHTAIRK  402 (517)
Q Consensus       333 IgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql-ekQ~e~I~k  402 (517)
                      +++.|++++++..++-.++.+.|....+|..+-.+...+-..+-.++..++.|+-.|.+++ +..++.|+.
T Consensus         3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~   73 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD   73 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777777877777777777777777777777777777777777765 444444443

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=95.38  E-value=2.4  Score=42.09  Aligned_cols=19  Identities=5%  Similarity=-0.060  Sum_probs=9.4

Q ss_pred             HHHHHHHHHhhhHHHHhhc
Q psy10797        275 FRKFACVVRDSKRDERKKL  293 (517)
Q Consensus       275 lr~rlk~l~e~~~k~rqkl  293 (517)
                      +.+.+.++...+.++...+
T Consensus        42 l~~~le~lr~~L~Py~~el   60 (273)
T 3s84_A           42 IGDNLRELQQRLEPYADQL   60 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555555544443

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.30  E-value=0.0093  Score=48.75  Aligned_cols=38  Identities=16%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             cccccccccccc------cccccchhhHHHHHhhhc-cCCCCCCC
Q psy10797        468 FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQ-RKCPKCNA  505 (517)
Q Consensus       468 ~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~-RKCP~C~~  505 (517)
                      -.|.||++....      |+|.|=..||..|+++++ +.||.|+.
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~   60 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND   60 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCS
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcC
Confidence            468889886543      999999999999998763 79999999

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.19  E-value=2  Score=39.82  Aligned_cols=57  Identities=11%  Similarity=0.179  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL  361 (517)
Q Consensus       305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL  361 (517)
                      +|.++++-..+++..+.....|-.|+..++.-.+.+.....+--+.-...++.+..|
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L   82 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL   82 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH
Confidence            777777777777777777777888888888777776655555444444444444444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.01  E-value=2.2  Score=39.47  Aligned_cols=73  Identities=11%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        319 HKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT  398 (517)
Q Consensus       319 ~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e  398 (517)
                      ++.+..+...-+.+++.+-++..+.-...-.++..+.+...-       |+.++..+-+....|+.++..|...+....+
T Consensus        47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE-------AE~RAE~AERsv~kLEk~id~lEd~L~~~Ke  119 (155)
T 2efr_A           47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE-------AETRAEFAERSVTKLEKSIDDLEDELYAQKL  119 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444443322       3344444444444444444444444433333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.63  E-value=0.91  Score=49.20  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE  405 (517)
Q Consensus       374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE  405 (517)
                      .+.++.+.--..++.|+..++.|-..|+|||-
T Consensus       121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEv  152 (562)
T 3ghg_A          121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV  152 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556777777777888888887775

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.54  E-value=0.45  Score=39.90  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLM  362 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~  362 (517)
                      ..+||..+-..|.-|+..++.+++++..|..|.+.+...-+.+..+|.++-++...+++++..|.
T Consensus        11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888888889999999999999999999999999999999999999999999999998874

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.49  E-value=0.45  Score=42.06  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy10797        301 KIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKD  380 (517)
Q Consensus       301 rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKd  380 (517)
                      .|..+...+..|+..+++++....+|..-|..+++-|+....+.+.+   +.++|+...++-.|-...-+-|..+|.-|-
T Consensus        37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~---i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl  113 (129)
T 3tnu_B           37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNK---LAELEEALQKAKQDMARLLREYQELMNTKL  113 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555655655555544444433   356788888888888888889999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy10797        381 TLREQVQALSLQI  393 (517)
Q Consensus       381 aLe~Evk~Lk~Ql  393 (517)
                      +|+.|+.+-++.+
T Consensus       114 ~Ld~EIatYRkLL  126 (129)
T 3tnu_B          114 ALDVEIATYRKLL  126 (129)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhH
Confidence            9999988876543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=94.45  E-value=3.1  Score=45.48  Aligned_cols=18  Identities=0%  Similarity=0.106  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        323 EEALLNEMEVTGQAFEDM  340 (517)
Q Consensus       323 ~eALlsEIEsIgqAyEdm  340 (517)
                      ++.+..+++.+.+.|...
T Consensus       433 ~~~~~~~~~~~~~~Y~~~  450 (592)
T 1f5n_A          433 YRLFVQKLQDLKKKYYEE  450 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            456777777777777653

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.31  E-value=1.9  Score=36.85  Aligned_cols=80  Identities=11%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKAIESAQSAADLKLHLV  450 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~~E~sq~~~dLk~qLe  450 (517)
                      |..++.-++|........+..++......-.++++.-..|+.++..+|.++...+..+...+.++.+..+...+...++.
T Consensus        10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~   89 (101)
T 3u1c_A           10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVA   89 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555555666666666666555555554444444444444443333333

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=94.19  E-value=0.33  Score=42.93  Aligned_cols=36  Identities=11%  Similarity=0.086  Sum_probs=24.5

Q ss_pred             cccccccccccc---------cccccchhhHHHHH-----hhhccCCCCC
Q psy10797        468 FSAKFVNFRRKS---------YFFVEFLDCLRTRY-----ETRQRKCPKC  503 (517)
Q Consensus       468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl-----~tR~RKCP~C  503 (517)
                      -.|.+|...|--         ||++||..|...+.     ....|-|-.|
T Consensus        70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C  119 (125)
T 1joc_A           70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC  119 (125)
T ss_dssp             CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHH
T ss_pred             CCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHH
Confidence            478899886532         99999999976542     2344555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.17  E-value=0.49  Score=48.96  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVL  414 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kL  414 (517)
                      +.++++.++.++..+..++++..+....+...+..+.+++
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (487)
T 3oja_A          447 LAEENARLKKLNGEADLALASANATLQELVVREQNLASQL  486 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence            3445555556666666555555555555555555555443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.10  E-value=0.75  Score=40.78  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDT  381 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKda  381 (517)
                      |..+...+..|+..+++++....+|..-|..+++-|+....+.+.+   +.++|....++-.|-...-+-|..+|.-|-+
T Consensus        40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~---i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~  116 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM---IGSVEEQLAQLRCEMEQQNQEYKILLDVKTR  116 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555555555555555555555544444443   3567888888888888888899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy10797        382 LREQVQALSLQI  393 (517)
Q Consensus       382 Le~Evk~Lk~Ql  393 (517)
                      |+.|+.+-++.+
T Consensus       117 Ld~EIatYRkLL  128 (131)
T 3tnu_A          117 LEQEIATYRRLL  128 (131)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhH
Confidence            999988877654

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}

Probab=93.20  E-value=2.9  Score=45.10  Aligned_cols=118  Identities=13%  Similarity=0.081  Sum_probs=80.4

Q ss_pred             hHhhhhcCCcccccccccHHHHHHHHHHHhhhHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10797        255 RWFDFRSLSDSASNIYGSLEFRKFACVVRDSKRDERKKLA-DEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVT  333 (517)
Q Consensus       255 ~l~~~~~~~d~~~~i~~e~elr~rlk~l~e~~~k~rqkla-d~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsI  333 (517)
                      .+......||+  .-.+|-.+..+|+++++..+.++-+.. ++...++   .-.+++++++-.......++.=.+|++.+
T Consensus        77 V~G~~~~~pDP--LsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k---~g~~l~~v~~~~~~~~~~e~~e~~q~~~L  151 (526)
T 3iyk_A           77 VLGSGEEIPDP--LSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEK---FGKELEEVYNFMNGEANAEIEDEKQFDIL  151 (526)
T ss_pred             hcccCCCCCCC--CCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            34444445665  558888999999999988877554442 3333333   33455566555554444444445799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy10797        334 GQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLARE  377 (517)
Q Consensus       334 gqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamr  377 (517)
                      ++|.+.+.+....--.+|...-++..|=..+|..-..+.=..|+
T Consensus       152 ekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr  195 (526)
T 3iyk_A          152 NKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYR  195 (526)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            99999999888888888888888888877777776665555554

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.09  E-value=3.8  Score=44.47  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        407 ERFLQTVLTNAEKELHLRNQAMDL  430 (517)
Q Consensus       407 Er~L~~kLs~lEKEL~~lkqale~  430 (517)
                      .+.|++.|.++-.+++.|..+++.
T Consensus       133 IrvLQsnLedq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          133 IQLLQKNVRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555444443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.85  E-value=5.2  Score=36.48  Aligned_cols=111  Identities=11%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             HHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        278 FACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDA  357 (517)
Q Consensus       278 rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~  357 (517)
                      |+.-+++.+.+...++  ..+..+|..++...++-......++......-.-|+.++..++++..               
T Consensus         4 ri~llEeeLer~eerl--~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~---------------   66 (147)
T 2b9c_A            4 RIQLVEEELDRAQERL--ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH---------------   66 (147)
T ss_dssp             -------CCGGGGTTT--THHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH---------------
Confidence            4444444444433333  34455555555555444444443433333333334444433333222               


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        358 NFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQ  411 (517)
Q Consensus       358 n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~  411 (517)
                          ++|  -|+.||.-+.+-...++.++.......+.....|..|++.-+.+.
T Consensus        67 ----~ae--eadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~  114 (147)
T 2b9c_A           67 ----IAE--DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT  114 (147)
T ss_dssp             ----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                222  367788887777777777666555555555555555555444333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=92.40  E-value=1.2  Score=37.33  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10797        308 QTHQLQKQVATHKQEEEALLNEMEVTGQAFEDM  340 (517)
Q Consensus       308 EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdm  340 (517)
                      ||++||.+++.+..+...+..|++.+..+.++.
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf   33 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL   33 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999998887777663

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.33  E-value=0.67  Score=42.37  Aligned_cols=119  Identities=10%  Similarity=0.098  Sum_probs=79.2

Q ss_pred             eeeeecchhhhHHHHHHhHhhhhcCCcccc---------ccccc---HHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHH
Q psy10797        238 LFVSICTSAFQMSFYKSRWFDFRSLSDSAS---------NIYGS---LEFRKFACVVRDSKRDERKKLADEEAMRKIKQL  305 (517)
Q Consensus       238 ~~~~~~~a~~~~~al~~~l~~~~~~~d~~~---------~i~~e---~elr~rlk~l~e~~~k~rqklad~Eal~rL~~l  305 (517)
                      |+=.+..++.+++-....|+...+.+|...         .+..+   ..++.+|+++.......-+++  +|+.++|..+
T Consensus         8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKy--eE~~RKl~~~   85 (147)
T 2b9c_A            8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY--EEVARKLVII   85 (147)
T ss_dssp             ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence            344566677777777777776666333311         11111   155556666665555555556  7888999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        306 EDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN  358 (517)
Q Consensus       306 E~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n  358 (517)
                      |.++++...+.+..+.....|-.||..+|.-.+.+...-.+--+.-...++.+
T Consensus        86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887665544444333344433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.27  E-value=5.6  Score=35.05  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10797        329 EMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTER  365 (517)
Q Consensus       329 EIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK  365 (517)
                      ||..+..-++.+.+...+--....+.++.+.+|..|+
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek   50 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK   50 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443333333334444444444444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.08  E-value=5  Score=34.01  Aligned_cols=56  Identities=16%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        373 KLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAM  428 (517)
Q Consensus       373 faamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqal  428 (517)
                      .++.-++|........+..++......-.++++.-..|+.++..++.++......+
T Consensus        12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l   67 (101)
T 3u59_A           12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555544444444444444444444444444444333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=92.01  E-value=0.63  Score=50.56  Aligned_cols=53  Identities=23%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             cccHHHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10797        270 YGSLEFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEE  324 (517)
Q Consensus       270 ~~e~elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~e  324 (517)
                      -.-..+..+.++-+.....+|++++.+.-++  ..+|.+..+|+.++...+++..
T Consensus       300 ~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  352 (575)
T 2i1j_A          300 IDVQQMKAQAREEKLAKQAQREKLQLEIAAR--ERAEKKQQEYQDRLRQMQEEME  352 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCSCCCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHH
Confidence            3444555556665556666677775422211  1233344455555554444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.61  E-value=4.3  Score=41.93  Aligned_cols=36  Identities=14%  Similarity=0.080  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        389 LSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       389 Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      .+...++..+.|.+++|....+...+.++.+++...
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (487)
T 3oja_A          433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASA  468 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence            444455566677777775555555555555555433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.53  E-value=1.2  Score=40.49  Aligned_cols=55  Identities=25%  Similarity=0.421  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy10797        348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI-EAMHTAIRK  402 (517)
Q Consensus       348 lqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql-ekQ~e~I~k  402 (517)
                      ...+...++...+|..+-.....+-..+-.++..++.|+-.|.+++ +..++.++.
T Consensus        38 ~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~   93 (135)
T 2e7s_A           38 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD   93 (135)
T ss_dssp             HHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777777777778888888888888888776 555555544

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.52  E-value=6.3  Score=34.02  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=19.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        368 SNQLHKLAREEKDTLREQVQALSLQIE  394 (517)
Q Consensus       368 AdQKyfaamreKdaLe~Evk~Lk~Qle  394 (517)
                      |+..-..++++...++..+..|+.|+.
T Consensus        67 AN~MVa~ar~e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           67 ANNMVADARKEKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455667778888888888887764

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=91.49  E-value=2  Score=35.23  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT  363 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a  363 (517)
                      ++.+|+.++|.+-.+|+.++..++++.+.=..|=+.....++.+.++..-|++++.+.-+-.+||..
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~   70 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            4556666666666666666666666665555666666666777777888899999999999999864

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.27  E-value=2.2  Score=38.50  Aligned_cols=8  Identities=0%  Similarity=0.339  Sum_probs=3.6

Q ss_pred             HHHHHHHH
Q psy10797        306 EDQTHQLQ  313 (517)
Q Consensus       306 E~EieeLr  313 (517)
                      ...+.+++
T Consensus        38 d~km~ei~   45 (138)
T 3hnw_A           38 NNKITEFN   45 (138)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            33444444

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=90.92  E-value=20  Score=38.79  Aligned_cols=26  Identities=4%  Similarity=0.009  Sum_probs=17.1

Q ss_pred             cccccccHHHHHHHHHHHhhhHHHHh
Q psy10797        266 ASNIYGSLEFRKFACVVRDSKRDERK  291 (517)
Q Consensus       266 ~~~i~~e~elr~rlk~l~e~~~k~rq  291 (517)
                      +.+|-.-+++.+|+++-++.+++...
T Consensus       287 vs~ilt~~elkqrqeee~r~~qew~~  312 (551)
T 2b5u_A          287 VSDVLSPDQVKQRQDEENRRQQEWDA  312 (551)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCHHHHHHHHHHHHHHHHHhhh
Confidence            34555666888888887766655433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.90  E-value=3.3  Score=37.38  Aligned_cols=60  Identities=13%  Similarity=0.124  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKL  361 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL  361 (517)
                      +-.+..+.+.|+..++.++++...|..|+....-.++.....+.++..++.+.+..+.+|
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555566666666666666666666665555555555555555555555555555

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.42  E-value=8.8  Score=33.77  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy10797        375 AREEKDTLREQVQALSLQIEAMHTAIRKLEEK-------ERFLQTVLTNAEKE  420 (517)
Q Consensus       375 amreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~-------Er~L~~kLs~lEKE  420 (517)
                      +....-.|+.++.+|+...+.....|+.|+-.       +|...+.|.++|..
T Consensus        33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k   85 (111)
T 2v66_B           33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR   85 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence            34445556667777777777666666665542       33344444555443

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=90.34  E-value=1.6  Score=36.35  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMT  363 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~a  363 (517)
                      +++.+|+.++|.+-.+|+.++..++++.+.=..+=+.....++.+.++..-|+++|.+.-+-.+||..
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~   76 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE   76 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            34456666666666666666666666666666666666667777778888899999999999999864

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=90.20  E-value=8.5  Score=39.49  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        332 VTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHT  398 (517)
Q Consensus       332 sIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e  398 (517)
                      +..+|.++++++..+.+.+.....+           +.+....+.+..+.+++...++++|...-+.
T Consensus       370 t~eeal~~~~~~i~~~l~~~~~~~e-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (471)
T 3mq9_A          370 TVDEALKDAQTRITAARDGLRAVME-----------ARNVTHLLQQELTEAQKGFQDVEAQAATANH  425 (471)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHH-----------hhhHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence            3455666666665555544432222           2233344445555555555555555444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.83  E-value=3.9  Score=37.85  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQ  350 (517)
Q Consensus       300 ~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqq  350 (517)
                      ++|..++.++++-.+.++.+..|..+|.-|+..+++...+++..|..+|+.
T Consensus        82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R  132 (152)
T 3a7p_A           82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555556666666666666666666666666655543

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=89.65  E-value=3.5  Score=34.33  Aligned_cols=70  Identities=14%  Similarity=0.140  Sum_probs=46.3

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        360 KLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMD  429 (517)
Q Consensus       360 KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale  429 (517)
                      .|++|+-.+.||..++......|+.+|+.|+.+++.+...-.+++..-+.+...|+.-=-+|..+++.+.
T Consensus         3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa   72 (79)
T 3cvf_A            3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA   72 (79)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3678888899999999999999999999999998888777666655555555555544445555555543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=89.13  E-value=15  Score=40.12  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=11.2

Q ss_pred             HHHHHhhhHHHHhhc----CcHHHHHH
Q psy10797        279 ACVVRDSKRDERKKL----ADEEAMRK  301 (517)
Q Consensus       279 lk~l~e~~~k~rqkl----ad~Eal~r  301 (517)
                      ++.+++...+|.++.    ..+++++.
T Consensus       437 ~~~~~~~~~~Y~~~~~kg~~~~~vl~~  463 (592)
T 1f5n_A          437 VQKLQDLKKKYYEEPRKGIQAEEILQT  463 (592)
T ss_dssp             HHHHHHHHHHHHHSSCCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            444444555554433    35566633

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=88.81  E-value=2.8  Score=36.95  Aligned_cols=71  Identities=13%  Similarity=0.210  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHH---HHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLED---QTHQLQKQVAT-------HKQEEEALLNEMEVTGQAFEDMQEQ  343 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~---EieeLr~kL~s-------~eqe~eALlsEIEsIgqAyEdmQeQ  343 (517)
                      +|..+|..++++++.-+...  ++..+.+++.++   +|.-|+++.+-       -..+-+-+..|++.+..-++.+|.|
T Consensus        28 ~L~~~L~~AEeaL~~Kq~~i--delk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q  105 (110)
T 2v4h_A           28 DLRQQLQQAEEALVAKQELI--DKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence            55555555555554422222  222222222222   33444444443       2333344566666666666666665


Q ss_pred             HHH
Q psy10797        344 NSR  346 (517)
Q Consensus       344 Nqr  346 (517)
                      |++
T Consensus       106 ~~~  108 (110)
T 2v4h_A          106 FNK  108 (110)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.72  E-value=10  Score=32.23  Aligned_cols=38  Identities=16%  Similarity=0.239  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10797        298 AMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQ  335 (517)
Q Consensus       298 al~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgq  335 (517)
                      +..+...++.++..+......++++..+|..=|..++.
T Consensus        21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~   58 (101)
T 3u1c_A           21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED   58 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444333333333

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=88.43  E-value=12  Score=40.32  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        321 QEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREK  354 (517)
Q Consensus       321 qe~eALlsEIEsIgqAyEdmQeQNqrklqqL~Ek  354 (517)
                      .+..++-.|++++.+|..+.++-..++|.+...+
T Consensus         9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~   42 (497)
T 3iox_A            9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAA   42 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4455666677777777777666666666554443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=87.81  E-value=1.7  Score=35.75  Aligned_cols=55  Identities=24%  Similarity=0.315  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        328 NEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMH  397 (517)
Q Consensus       328 sEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~QlekQ~  397 (517)
                      +-|++||. +.++|...++|..+|+.+|+.+..|              .++.+..+.+++.|+.+++|..
T Consensus        13 ~~~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eL--------------Ek~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           13 ASIEGRGS-LRDLQYALQEKIEELRQRDALIDEL--------------ELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             ------CH-HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcccCCc-HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Confidence            45777777 8889999999999999999876555              4556667778888888887753

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.65  E-value=14  Score=32.42  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE----KERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE----~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                      -+++..+.|+.|+..++.+.......|...+.    .-+.++..+..+|.+|..++..++.+-
T Consensus        40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql  102 (129)
T 3tnu_B           40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLL  102 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33555556666666666655555444444433    234466677788888887777776543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=87.09  E-value=24  Score=36.97  Aligned_cols=27  Identities=15%  Similarity=0.127  Sum_probs=15.7

Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10797        362 MTERIKSNQLHKLAREEKDTLREQVQA  388 (517)
Q Consensus       362 ~aEK~KAdQKyfaamreKdaLe~Evk~  388 (517)
                      ..+-.|+..+|..+-++.+......+.
T Consensus       149 ~~~l~KaKk~Y~~~cke~e~a~~~~~~  175 (486)
T 3haj_A          149 LKEVEAAKKAHHAACKEEKLAISREAN  175 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456666777777666655544433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=86.98  E-value=4.9  Score=32.80  Aligned_cols=65  Identities=17%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        371 LHKLAREEKDTLREQVQALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLRNQAMDLNKRKA  435 (517)
Q Consensus       371 KyfaamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~lkqale~~kkk~  435 (517)
                      |..++..++|........+...+........++++.-..|+.++..+|.++......+.....++
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL   71 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666665555555555555555555555555555544444443333333

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=86.91  E-value=34  Score=36.11  Aligned_cols=23  Identities=35%  Similarity=0.198  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        340 MQEQNSRLLQQLREKDDANFKLM  362 (517)
Q Consensus       340 mQeQNqrklqqL~EkED~n~KL~  362 (517)
                      ++...+.+..++..++..+..+.
T Consensus       131 l~~khq~l~~EL~~~e~~i~~v~  153 (450)
T 3r6n_A          131 KQEAFSIRMSQLEVKEKELNKLK  153 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHchHHHHHHH
Confidence            34444555555666666555553

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=86.59  E-value=19  Score=32.91  Aligned_cols=71  Identities=17%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        274 EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR  346 (517)
Q Consensus       274 elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr  346 (517)
                      +|+.-++.++..+..-+-.+  +=+-..+..-...++.|++.....+++...|-+|++++..-|++.+.+..+
T Consensus        15 ~L~~D~~s~~~eleEnqeEL--~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr   85 (167)
T 4gkw_A           15 DLKQDTESLQKQLEENQEEL--EIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR   85 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            55555666655544322222  223366666667788999999999999999999999999999887766544

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.05  E-value=17  Score=31.91  Aligned_cols=59  Identities=14%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        297 EAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDAN  358 (517)
Q Consensus       297 Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n  358 (517)
                      |...+.+.|.-|++.++.++.....+..   +.+-++..-...++..+..+...+++.|-.|
T Consensus         7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N   65 (111)
T 2v66_B            7 DLQADNQRLKYEVEALKEKLEHQYAQSY---KQVSVLEDDLSQTRAIKEQLHKYVRELEQAN   65 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445666777777777777776665532   3333334444445555555555555555443

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=85.83  E-value=22  Score=38.04  Aligned_cols=42  Identities=12%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        305 LEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSR  346 (517)
Q Consensus       305 lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqr  346 (517)
                      .+..+++|+..++.+.+....-..=|..|...|+..|.|...
T Consensus        98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e  139 (464)
T 1m1j_B           98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD  139 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence            445566666666655443322222233344445554444333

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=85.81  E-value=13  Score=30.60  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        322 EEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE  394 (517)
Q Consensus       322 e~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle  394 (517)
                      ...+|..-|..+++-|+....+.+.+   +.+.|+...++-.|-...-+-|..+|.-|-+|+.|+.+-++.++
T Consensus         9 ~~~sLE~~l~e~e~~~~~~~~~~q~~---i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE   78 (84)
T 1gk4_A            9 TNESLERQMREMEENFAVEAANYQDT---IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            33344444444444444433333333   34566777777777777788899999999999999988887664

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=85.23  E-value=4.3  Score=43.46  Aligned_cols=94  Identities=10%  Similarity=0.061  Sum_probs=73.9

Q ss_pred             cchhhhHHHHHHhHhhhhc-CCcccccccccH-HHHHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797        243 CTSAFQMSFYKSRWFDFRS-LSDSASNIYGSL-EFRKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK  320 (517)
Q Consensus       243 ~~a~~~~~al~~~l~~~~~-~~d~~~~i~~e~-elr~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~e  320 (517)
                      ..-..+++.|+.+|+.++. +.++.+++..-- -++++++.++.-+..+-+..  +|+.++|.-+.+.|..-=..+..++
T Consensus        61 rdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S--~eLe~ri~yIK~kVd~qi~~IrvLq  138 (491)
T 1m1j_A           61 QNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVS--TELRRRIVTLKQRVATQVNRIKALQ  138 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999 888877776654 56777888888887766665  7777888888877764447788888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10797        321 QEEEALLNEMEVTGQAFE  338 (517)
Q Consensus       321 qe~eALlsEIEsIgqAyE  338 (517)
                      .-.+.+..||..|+.+..
T Consensus       139 ~~l~~q~skIQRLE~dI~  156 (491)
T 1m1j_A          139 NSIQEQVVEMKRLEVDID  156 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888999999999988754

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=84.43  E-value=54  Score=36.19  Aligned_cols=85  Identities=8%  Similarity=0.142  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHH-H-HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy10797        327 LNEMEVTGQAFEDMQEQNSRLLQQLREKDD-ANFKLMTERIKSNQLHKL-A-REEKD-TLREQVQALSLQIEAMHTAIRK  402 (517)
Q Consensus       327 lsEIEsIgqAyEdmQeQNqrklqqL~EkED-~n~KL~aEK~KAdQKyfa-a-mreKd-aLe~Evk~Lk~QlekQ~e~I~k  402 (517)
                      ..+|+.+-.-++.|..+-..++.++.+..| -..+|+.+..+-.-..+. + .++.+ ....-...+...+.+|..++.+
T Consensus       555 ~~~L~~~l~~l~~l~~~R~~~~~~lk~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~  634 (704)
T 2xs1_A          555 VNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKN  634 (704)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666677777777778888876543 334556554331110111 1 11221 1333334455666778888888


Q ss_pred             HHHHHHHHH
Q psy10797        403 LEEKERFLQ  411 (517)
Q Consensus       403 LeE~Er~L~  411 (517)
                      +.+....+.
T Consensus       635 i~~~~~~f~  643 (704)
T 2xs1_A          635 IQVSHQEFS  643 (704)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=84.31  E-value=18  Score=30.57  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10797        296 EEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFED  339 (517)
Q Consensus       296 ~Eal~rL~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEd  339 (517)
                      +.+..+...++.++..+.......+.+..+|..=|..++.-++.
T Consensus        19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~   62 (101)
T 3u59_A           19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK   62 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444433333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.10  E-value=2.1  Score=38.90  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=18.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        368 SNQLHKLAREEKDTLREQVQALSLQIEAMHTAI  400 (517)
Q Consensus       368 AdQKyfaamreKdaLe~Evk~Lk~QlekQ~e~I  400 (517)
                      |+..-..++++...++..+..|+.++..-..+|
T Consensus        87 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll  119 (135)
T 2e7s_A           87 ANNLVADARMEKYAIEILNKRLTEQLREKDMLL  119 (135)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444556677777777666666554333333

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=83.94  E-value=3.6  Score=40.14  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10797        294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEEE  324 (517)
Q Consensus       294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~e  324 (517)
                      .+++...+++.++.+++.++.+++..+.+.+
T Consensus        63 d~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~   93 (341)
T 3fpp_A           63 DPEQAENQIKEVEATLMELRAQRQQAEAELK   93 (341)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777777666555533

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=83.34  E-value=5.9  Score=39.00  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=18.4

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy10797        294 ADEEAMRKIKQLEDQTHQLQKQVATHKQEE  323 (517)
Q Consensus       294 ad~Eal~rL~~lE~EieeLr~kL~s~eqe~  323 (517)
                      .+++...+++.++++++.++.+++..+.+.
T Consensus        64 d~~~~~~~l~~~~a~l~~~~a~l~~a~~~~   93 (369)
T 4dk0_A           64 DSTTQINTLNTRKAALASYQAQLVARKTAY   93 (369)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666667777777776666665544443

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=82.97  E-value=0.53  Score=49.08  Aligned_cols=39  Identities=23%  Similarity=0.407  Sum_probs=30.5

Q ss_pred             cccccccccccc-----------c--cccccchhhHHHHHhhhc----------cCCCCCCC
Q psy10797        467 EFSAKFVNFRRK-----------S--YFFVEFLDCLRTRYETRQ----------RKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K-----------~--CgHvFC~~CIq~rl~tR~----------RKCP~C~~  505 (517)
                      .--|.||-...-           +  |+|.|=..|+.+|+.+-.          ..||-|+.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~  369 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA  369 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence            357999986321           1  999999999999998633          47999998

>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}

Probab=82.93  E-value=6.3  Score=36.14  Aligned_cols=17  Identities=24%  Similarity=0.388  Sum_probs=8.8

Q ss_pred             cHHHHHHHHHHHHHHHH
Q psy10797        295 DEEAMRKIKQLEDQTHQ  311 (517)
Q Consensus       295 d~Eal~rL~~lE~Eiee  311 (517)
                      |..+.++|+.+=.++.+
T Consensus        41 Da~vrq~Ia~LP~eVsd   57 (152)
T 4fla_A           41 DATVRQKIASLPQEVQD   57 (152)
T ss_dssp             HHHHHHHHHTSCGGGTC
T ss_pred             hHHHHHHHHcCCccccC
Confidence            44455666555555443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.56  E-value=23  Score=31.17  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        374 LAREEKDTLREQVQALSLQIEAMHTAIRKLEE----KERFLQTVLTNAEKELHLRNQAMDLNK  432 (517)
Q Consensus       374 aamreKdaLe~Evk~Lk~QlekQ~e~I~kLeE----~Er~L~~kLs~lEKEL~~lkqale~~k  432 (517)
                      .+++..+.|+.|+..++.+.......|...+.    .-+.++..+..+|.+|..++..++.+-
T Consensus        42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql  104 (131)
T 3tnu_A           42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN  104 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666655555444444443    234566677788888887777776543

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=82.41  E-value=8.6  Score=31.87  Aligned_cols=44  Identities=16%  Similarity=0.079  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        351 LREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIE  394 (517)
Q Consensus       351 L~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Qle  394 (517)
                      +.+.|....++-.|-....+-|..+|.-|-+|+.|+.+-++.++
T Consensus        37 i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE   80 (86)
T 1x8y_A           37 LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            34457777777777777888999999999999999988887765

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=82.37  E-value=0.93  Score=38.35  Aligned_cols=40  Identities=13%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             cccccccccccccc-----c----ccccchhhHHHHHhhhcc----CCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----Y----FFVEFLDCLRTRYETRQR----KCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----C----gHvFC~~CIq~rl~tR~R----KCP~C~~  505 (517)
                      ..++|++|.+|..+     |    .|.||.+|-+..|+....    -||.-.+
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k   66 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK   66 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred             CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence            35799999999888     4    799999999999976432    4666555

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.19  E-value=22  Score=30.08  Aligned_cols=75  Identities=12%  Similarity=0.221  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy10797        302 IKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAR  376 (517)
Q Consensus       302 L~~lE~EieeLr~kL~s~eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaam  376 (517)
                      |..++.+-++|...|..++++.+.+-.||.....--+.+..+-.+...+..+..-..+-+..|+--.+..|.-+.
T Consensus        13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~   87 (96)
T 3q8t_A           13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ   87 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444443333333333333333333333333333333333

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=82.14  E-value=35  Score=32.39  Aligned_cols=42  Identities=10%  Similarity=0.052  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797        348 LQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL  389 (517)
Q Consensus       348 lqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L  389 (517)
                      ..++........+...+-.|+..+|+.+-++.+........+
T Consensus       122 ~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~  163 (305)
T 2efl_A          122 FHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM  163 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455566667778888888888887776655433

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=81.59  E-value=64  Score=35.03  Aligned_cols=15  Identities=27%  Similarity=0.160  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHH
Q psy10797        408 RFLQTVLTNAEKELH  422 (517)
Q Consensus       408 r~L~~kLs~lEKEL~  422 (517)
                      ++++.....+.+++.
T Consensus       405 ~~~~a~~d~~~~~~s  419 (551)
T 2b5u_A          405 NNKQAAFDAAAKEKS  419 (551)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhccc
Confidence            334444444444444

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=81.36  E-value=0.77  Score=44.64  Aligned_cols=39  Identities=15%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             ccccccccccccc------cccccchhhHHHHHhhh-ccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS------YFFVEFLDCLRTRYETR-QRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR-~RKCP~C~~  505 (517)
                      .-.|.+|+.-.--      |+|.|=..|++.++++| .++||.|+.
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~  225 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND  225 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence            3468888874222      88999999999999876 469999999

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=81.25  E-value=7  Score=35.97  Aligned_cols=45  Identities=7%  Similarity=-0.059  Sum_probs=19.9

Q ss_pred             HHHHHHHHhhhHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10797        276 RKFACVVRDSKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHK  320 (517)
Q Consensus       276 r~rlk~l~e~~~k~rqklad~Eal~rL~~lE~EieeLr~kL~s~e  320 (517)
                      +.++++.++.+.-..+....++...++..+|.+...|.......+
T Consensus         9 e~~~~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~kl~~e~~i~e   53 (146)
T 2xnx_M            9 EKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQ   53 (146)
T ss_dssp             THHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444443333333333344555555555555544443333

>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}

Probab=81.19  E-value=42  Score=33.54  Aligned_cols=95  Identities=13%  Similarity=0.070  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------------H
Q psy10797        320 KQEEEALLNEMEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQ-------------V  386 (517)
Q Consensus       320 eqe~eALlsEIEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~E-------------v  386 (517)
                      -++..++..|++..-+.|++.=....+++++...        ..|  ||.++|...-++-|.+...             .
T Consensus       100 ~~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~--------~l~--KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~  169 (279)
T 3qwe_A          100 YQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQ--------ALR--RAQLQYVQRSEDLRARSQGSPEDSAPQASPGPS  169 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHHHHTCCCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHHHHHHHHHHHHHHhcCCCcccccccccccc
Confidence            3778889999999999999977766666655433        223  3556888877766644321             1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        387 QALSLQIEAMHTAIRKLEEKERFLQTVLTNAEKELHLR  424 (517)
Q Consensus       387 k~Lk~QlekQ~e~I~kLeE~Er~L~~kLs~lEKEL~~l  424 (517)
                      +.+.+....-.+...|.++.+..++..+..++++-..+
T Consensus       170 K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL  207 (279)
T 3qwe_A          170 KQQERRRRSREEAQAKAQEAEALYQACVREANARQQDL  207 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222233456666667777777777766654333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=81.19  E-value=18  Score=30.45  Aligned_cols=8  Identities=50%  Similarity=0.771  Sum_probs=3.3

Q ss_pred             HHHHHHHH
Q psy10797        340 MQEQNSRL  347 (517)
Q Consensus       340 mQeQNqrk  347 (517)
                      ||..|.|+
T Consensus        11 mq~LNdRl   18 (93)
T 3s4r_A           11 LQELNDRF   18 (93)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.001

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 285 SKRDERKKLADEEAMRKIKQLEDQTHQLQKQVATHKQEEEALLNEMEVTGQAFEDMQEQN 344
            K  E    A  +  + + + E +    + +  + +   + L        Q  E  +   
Sbjct: 182 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSY 241

Query: 345 SRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQIEAMHTAIRKLE 404
              L+QL EK + +   + +  +     KL +E++  L+E  Q    +   M   I+ L+
Sbjct: 242 QEHLKQLTEKMENDRVQLLKEQERTLALKL-QEQEQLLKEGFQK---ESRIMKNEIQDLQ 297

Query: 405 EK 406
            K
Sbjct: 298 TK 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.84
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.72
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.53
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.46
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.44
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.37
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.32
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.27
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.08
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.08
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.86
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.75
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.56
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.48
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.26
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.54
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	93.84
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	91.42
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	88.44
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	83.98

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=4.2e-10  Score=92.68  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      .++.|+||.+.+++     |||+||..||++|++.+.++||.|+.  +..|+.
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            56899999999988     99999999999999999999999999  667764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.7e-09  Score=82.70  Aligned_cols=49  Identities=8%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             ccccccccccc---c-------ccccccchhhHHHHHhhhccCCCCCCC--CCCCceEeec
Q psy10797        467 EFSAKFVNFRR---K-------SYFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLYL  515 (517)
Q Consensus       467 e~kC~iC~~r~---K-------~CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIyl  515 (517)
                      +..|+||.+..   .       .|||+||..||++|+.+..++||.|++  ..+|++...+
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~~~~f   63 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF   63 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccccccCC
Confidence            56899998742   1       199999999999999877889999999  8899887765

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.5e-09  Score=85.04  Aligned_cols=46  Identities=17%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             cccccccccccc-----cccccchhhHHHHHhhhccCCCCCCCCCCCceEe
Q psy10797        468 FSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNAKANDYHRL  513 (517)
Q Consensus       468 ~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~~~~Dv~rI  513 (517)
                      ..|+||.+..++     |||+||.+||.+|+..+.++||.|+..-+++..|
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            469999999988     9999999999999988888999999944444443

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.5e-09  Score=86.48  Aligned_cols=53  Identities=9%  Similarity=0.168  Sum_probs=42.3

Q ss_pred             hhcccccccccccccccccc-----cccccchhhHHHHHhhhc--cCCCCCCC--CCCCceEe
Q psy10797        460 LEFGKDREFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQ--RKCPKCNA--KANDYHRL  513 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~--RKCP~C~~--~~~Dv~rI  513 (517)
                      ++.++ +.+.|+||.+.+++     |||.||..||.+|+..+.  .+||.|+.  ...|+++-
T Consensus        15 ~~~l~-~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   76 (103)
T d1jm7a_          15 INAMQ-KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES   76 (103)
T ss_dssp             HHHHH-HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred             HHhcc-cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcC
Confidence            34444 67899999998888     999999999999997643  48999999  66666543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.5e-08  Score=76.27  Aligned_cols=46  Identities=7%  Similarity=-0.058  Sum_probs=40.9

Q ss_pred             cccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCceEee
Q psy10797        468 FSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHRLY  514 (517)
Q Consensus       468 ~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~rIy  514 (517)
                      +-|+||.+.+++      |||+||.+||.+|++. +.+||.||.  ..+|+.++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeCC
Confidence            359999998888      9999999999999986 679999999  888988775

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.46  E-value=3.2e-08  Score=78.33  Aligned_cols=47  Identities=11%  Similarity=0.054  Sum_probs=42.1

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+||.+-+++     |||.||..||+.|++...++||.|+.  ...|+.+
T Consensus         7 ~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p   60 (78)
T d1t1ha_           7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             ccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccc
Confidence            46999999999999     99999999999999888889999999  6677654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.44  E-value=4.2e-08  Score=76.18  Aligned_cols=40  Identities=10%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             ccccccccccc------cccccchhhHHHHHhhhccCCCCCCCCCCC
Q psy10797        469 SAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNAKAND  509 (517)
Q Consensus       469 kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~~~~D  509 (517)
                      +|+||.+.+++      |||+||..||++|++. +++||.|++.-.+
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHh
Confidence            69999998766      9999999999999976 6899999984444

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.1e-08  Score=81.43  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             hhcccccccccccccccccc------cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        460 LEFGKDREFSAKFVNFRRKS------YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       460 LEKLKk~e~kC~iC~~r~K~------CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      ++.++ ..+.|+||.+.+++      |||.||..||.+|+.+   +||.|+.  ...|+.
T Consensus        16 l~~l~-~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~   71 (97)
T d1jm7b_          16 LDRLE-KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLK   71 (97)
T ss_dssp             HHHHH-HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCC
T ss_pred             HHhhh-hcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCc
Confidence            45555 67899999998877      9999999999999853   6999998  666654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.1e-07  Score=75.68  Aligned_cols=46  Identities=4%  Similarity=-0.138  Sum_probs=40.4

Q ss_pred             cccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC--CCCCce
Q psy10797        466 REFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA--KANDYH  511 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~  511 (517)
                      .+|.|+||.+-+++     |||.||..||++++......||.|+.  ...|+.
T Consensus         6 ~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~   58 (80)
T d2c2la2           6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI   58 (80)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred             ccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccc
Confidence            56899999999999     99999999999999887778999998  555554

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.8e-07  Score=69.31  Aligned_cols=38  Identities=11%  Similarity=0.134  Sum_probs=32.7

Q ss_pred             cccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        468 FSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       468 ~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      +.|+||.+.+.+         |||.||..|++.|+.+...+||.|++
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~   47 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK   47 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCC
Confidence            368999886533         99999999999999877779999998

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.08  E-value=4.6e-07  Score=68.06  Aligned_cols=38  Identities=11%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             ccccccccccccc---------cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS---------YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~---------CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      ...|+||.+.+.+         |+|.||..||.+|+++ +..||.|+.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~   51 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRL   51 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCC
Confidence            4579999987653         9999999999999976 679999986

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.9e-07  Score=69.64  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             ccccccccccccc-----cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS-----YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~-----CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      .+.|+||.+.+++     |||+||..||+.    ...+||.|++
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~----~~~~CP~Cr~   45 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQA   45 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCS
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHHc----CCCcCcCCCC
Confidence            4689999999988     999999999964    3568999998

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=2.5e-06  Score=71.16  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=23.3

Q ss_pred             cccccchhhHHHHHhhhc----cCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQ----RKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~----RKCP~C~~  505 (517)
                      |+|+||..||..|+..++    .+||.|++
T Consensus        61 CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~   90 (114)
T d1v87a_          61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCKT   90 (114)
T ss_dssp             SCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred             CCChhhHHHHHHHHHhcCcCCCCccccccc
Confidence            999999999999998754    37999998

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=6.6e-06  Score=68.05  Aligned_cols=46  Identities=7%  Similarity=-0.047  Sum_probs=39.0

Q ss_pred             cccccccccccccc-----c-ccccchhhHHHHHhhhccCCCCCCC--CCCCceE
Q psy10797        466 REFSAKFVNFRRKS-----Y-FFVEFLDCLRTRYETRQRKCPKCNA--KANDYHR  512 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----C-gHvFC~~CIq~rl~tR~RKCP~C~~--~~~Dv~r  512 (517)
                      .+|.|+||..-++|     | +|.||..||.+|+. ++.+||.|+.  ...|+..
T Consensus        21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~-~~~~~P~~~~~l~~~~L~p   74 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRP   74 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTTTSEE
T ss_pred             HHhCCcCchhHHHHHHhcccccchhhHHHHHHHHH-hcCCcccccccccchhhcc
Confidence            67999999999988     4 56899999999995 5789999999  6666653

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.3e-05  Score=64.59  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             cccccchhhHHHHHhhhccCCCCCCC
Q psy10797        480 YFFVEFLDCLRTRYETRQRKCPKCNA  505 (517)
Q Consensus       480 CgHvFC~~CIq~rl~tR~RKCP~C~~  505 (517)
                      |||.|+..||..|++. +..||.|++
T Consensus        57 C~H~FH~~Ci~~Wl~~-~~~CP~CR~   81 (88)
T d3dplr1          57 CNHAFHFHCISRWLKT-RQVCPLDNR   81 (88)
T ss_dssp             TSCEEEHHHHHHHHTT-CSBCSSSCS
T ss_pred             ccCcccHHHHHHHHHH-CCcCCCCCC
Confidence            9999999999999986 579999997

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.48  E-value=2.5e-05  Score=58.61  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             ccccccccccccc----------cccccchhhHHHHHhh-hccCCCCCCC
Q psy10797        467 EFSAKFVNFRRKS----------YFFVEFLDCLRTRYET-RQRKCPKCNA  505 (517)
Q Consensus       467 e~kC~iC~~r~K~----------CgHvFC~~CIq~rl~t-R~RKCP~C~~  505 (517)
                      ...|.||.+...+          |+|.|+..|++.|+.. +..+||.|++
T Consensus         6 ~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~   55 (60)
T d1vyxa_           6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV   55 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCC
T ss_pred             CCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCC
Confidence            3568999875443          6799999999999976 4568999997

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=3.7e-05  Score=61.76  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=29.8

Q ss_pred             cccccccccccc--------cccccchhhHHHHHhhhc-------cCCCCCCC
Q psy10797        468 FSAKFVNFRRKS--------YFFVEFLDCLRTRYETRQ-------RKCPKCNA  505 (517)
Q Consensus       468 ~kC~iC~~r~K~--------CgHvFC~~CIq~rl~tR~-------RKCP~C~~  505 (517)
                      ..|+||.+....        |+|.||.+|+..++++.-       =+||.|+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            579999876432        999999999999997642       17998764

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=1.4  Score=38.86  Aligned_cols=75  Identities=9%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10797        319 HKQEEEALLNE-MEVTGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQALSLQI  393 (517)
Q Consensus       319 ~eqe~eALlsE-IEsIgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~Lk~Ql  393 (517)
                      ...-.+.|..+ ++.+...-++...+..+...+.........+...+-.|+..+|..+.++.+.+..+...+....
T Consensus        87 h~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~  162 (288)
T d2efla1          87 HEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI  162 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            33344445444 3445555555555556666666666666666777777788888888888877777766665433

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.84  E-value=1.2  Score=35.26  Aligned_cols=16  Identities=25%  Similarity=0.634  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy10797        300 RKIKQLEDQTHQLQKQ  315 (517)
Q Consensus       300 ~rL~~lE~EieeLr~k  315 (517)
                      .++..++.++..+...
T Consensus        29 ~k~~~~e~~~~~~~~~   44 (185)
T d2ap3a1          29 KKIAELDEKKKKLTED   44 (185)
T ss_dssp             HHHHHHHHHHHTTTTG
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444333

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=4.4  Score=35.87  Aligned_cols=29  Identities=0%  Similarity=0.059  Sum_probs=13.4

Q ss_pred             ecccCcceeeeecchhhhHHHHHHhHhhhhc
Q psy10797        231 IFSLTSTLFVSICTSAFQMSFYKSRWFDFRS  261 (517)
Q Consensus       231 i~~l~~~~~~~~~~a~~~~~al~~~l~~~~~  261 (517)
                      ||.+.+++.. +..++- ..|++.++..|..
T Consensus        26 ~P~i~~~~~~-~~~~e~-~~a~e~a~~~Y~~   54 (300)
T d1f5na1          26 LPCMENAVLA-LAQIEN-SAAVQKAIAHYEQ   54 (300)
T ss_dssp             CCBHHHHHHH-HHHHHH-HHHHHHHHHHHHH
T ss_pred             CCChhHHHHH-HHHHHH-HHHHHHHHHHHHH
Confidence            6666655432 222222 3445555555544

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=7.3  Score=33.90  Aligned_cols=57  Identities=11%  Similarity=0.072  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10797        333 TGQAFEDMQEQNSRLLQQLREKDDANFKLMTERIKSNQLHKLAREEKDTLREQVQAL  389 (517)
Q Consensus       333 IgqAyEdmQeQNqrklqqL~EkED~n~KL~aEK~KAdQKyfaamreKdaLe~Evk~L  389 (517)
                      +....++......+...++...+....+...+-.|+..+|..+.++.+.+......+
T Consensus        93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~  149 (279)
T d2efka1          93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL  149 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444455555555555555566666666555555444443

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=0.36  Score=37.94  Aligned_cols=40  Identities=13%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             cccccccccccccc-----c----ccccchhhHHHHHhhhcc----CCCCCCC
Q psy10797        466 REFSAKFVNFRRKS-----Y----FFVEFLDCLRTRYETRQR----KCPKCNA  505 (517)
Q Consensus       466 ~e~kC~iC~~r~K~-----C----gHvFC~~CIq~rl~tR~R----KCP~C~~  505 (517)
                      ..++|++|.++..+     |    +|.||.+|-.+.|+....    -||...+
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG~k   59 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK   59 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCCCc
Confidence            45799999999888     4    899999999999986443    5776655