Psyllid ID: psy10809

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ
ccccHHccHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHccccHHHHHHcHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcc
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLemkpacqgrslemfltfpmhqiPRYIVTLHELlahtphdhvERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEgcdilldvNQVFVRQ
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ
***PMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHT***********************************KNLAVERLIVEGCDILLDVNQVFV**
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEM******RSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEV***ENLRKNLAVERLIVEGCDILLDVNQVFVRQ
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDL***********ENLRKNLAVERLIVEGCDILLDVNQVFVRQ
MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFV**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAVERLIVEGCDILLDVNQVFVRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query136 2.2.26 [Sep-21-2011]
O14827 1237 Ras-specific guanine nucl yes N/A 1.0 0.109 0.727 6e-56
P70392 1189 Ras-specific guanine nucl yes N/A 1.0 0.114 0.727 6e-56
Q99JE4 1190 Ras-specific guanine nucl yes N/A 1.0 0.114 0.727 1e-55
A2CEA7 1244 Ras-specific guanine nucl yes N/A 1.0 0.109 0.727 4e-55
P28818 1244 Ras-specific guanine nucl no N/A 1.0 0.109 0.705 9e-54
P27671 1262 Ras-specific guanine nucl no N/A 1.0 0.107 0.705 1e-53
Q13972 1275 Ras-specific guanine nucl no N/A 1.0 0.106 0.691 4e-53
Q1ZXH8 1632 Guanine exchange factor f yes N/A 0.941 0.078 0.297 4e-13
Q15811 1721 Intersectin-1 OS=Homo sap no N/A 0.580 0.045 0.354 2e-09
Q9Z0R4 1714 Intersectin-1 OS=Mus musc no N/A 0.580 0.046 0.354 2e-09
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens GN=RASGRF2 PE=1 SV=2 Back     alignment and function desciption
 Score =  215 bits (548), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 118/136 (86%)

Query: 1   MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
           +LLPML IYQE+VRNH YSLQVL  CKQ  +F +LLK+ E  PAC+GR LE FLT+PM Q
Sbjct: 328 ILLPMLNIYQEFVRNHQYSLQVLANCKQNRDFDKLLKQYEANPACEGRMLETFLTYPMFQ 387

Query: 61  IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
           IPRYI+TLHELLAHTPH+HVERKSL+ A+ +LE+LSR MHDEVS+TEN+RKNLA+ER+IV
Sbjct: 388 IPRYIITLHELLAHTPHEHVERKSLEFAKSKLEELSRVMHDEVSDTENIRKNLAIERMIV 447

Query: 121 EGCDILLDVNQVFVRQ 136
           EGCDILLD +Q F+RQ
Sbjct: 448 EGCDILLDTSQTFIRQ 463
Functions as a calcium-regulated nucleotide exchange factor activating both Ras and RAC1 through the exchange of bound GDP for GTP. Preferentially activates HRAS in vivo compared to RRAS based on their different types of prenylation. Functions in synaptic plasticity by contributing to the induction of long term potentiation.
Homo sapiens (taxid: 9606)
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus GN=Rasgrf2 PE=1 SV=2 Back     alignment and function description
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus norvegicus GN=Rasgrf2 PE=1 SV=1 Back     alignment and function description
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio GN=rasgrf2 PE=3 SV=1 Back     alignment and function description
>sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus norvegicus GN=Rasgrf1 PE=1 SV=1 Back     alignment and function description
>sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus GN=Rasgrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q13972|RGRF1_HUMAN Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=1 Back     alignment and function description
>sp|Q1ZXH8|GXCDD_DICDI Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum GN=gxcDD PE=4 SV=3 Back     alignment and function description
>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query136
189233725 1406 PREDICTED: similar to AGAP001238-PA [Tri 1.0 0.096 0.897 1e-68
347965565 1505 AGAP001238-PA [Anopheles gambiae str. PE 1.0 0.090 0.904 1e-67
157128743 910 hypothetical protein AaeL_AAEL011225 [Ae 1.0 0.149 0.904 1e-67
347965563 1618 AGAP001238-PB [Anopheles gambiae str. PE 1.0 0.084 0.904 1e-67
380018321 1401 PREDICTED: LOW QUALITY PROTEIN: ras-spec 1.0 0.097 0.897 4e-67
170043899 1074 conserved hypothetical protein [Culex qu 1.0 0.126 0.897 5e-67
328793677 1401 PREDICTED: ras-specific guanine nucleoti 1.0 0.097 0.889 2e-66
307177674 1156 Ras-specific guanine nucleotide-releasin 1.0 0.117 0.897 2e-66
307194740 1381 Ras-specific guanine nucleotide-releasin 1.0 0.098 0.882 2e-66
383858662 1675 PREDICTED: ras-specific guanine nucleoti 1.0 0.081 0.890 9e-66
>gi|189233725|ref|XP_970314.2| PREDICTED: similar to AGAP001238-PA [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/136 (89%), Positives = 129/136 (94%)

Query: 1   MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
           MLLPML IYQEYVRNHHYSLQVLTECKQ P+F  +LKRLE KPAC GRSLE FLT+PMHQ
Sbjct: 344 MLLPMLSIYQEYVRNHHYSLQVLTECKQSPQFSAMLKRLESKPACHGRSLETFLTYPMHQ 403

Query: 61  IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
           +PRYI+TLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVER++V
Sbjct: 404 VPRYIITLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERMVV 463

Query: 121 EGCDILLDVNQVFVRQ 136
           EGCDILLDVNQVFVRQ
Sbjct: 464 EGCDILLDVNQVFVRQ 479

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|347965565|ref|XP_321917.5| AGAP001238-PA [Anopheles gambiae str. PEST] gi|333470453|gb|EAA01783.5| AGAP001238-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157128743|ref|XP_001661501.1| hypothetical protein AaeL_AAEL011225 [Aedes aegypti] gi|108872489|gb|EAT36714.1| AAEL011225-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|347965563|ref|XP_003435786.1| AGAP001238-PB [Anopheles gambiae str. PEST] gi|333470454|gb|EGK97627.1| AGAP001238-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|380018321|ref|XP_003693080.1| PREDICTED: LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|170043899|ref|XP_001849605.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867180|gb|EDS30563.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328793677|ref|XP_001122143.2| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307177674|gb|EFN66720.1| Ras-specific guanine nucleotide-releasing factor 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307194740|gb|EFN76974.1| Ras-specific guanine nucleotide-releasing factor 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383858662|ref|XP_003704818.1| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query136
UNIPROTKB|F1RF08 1144 RASGRF2 "Uncharacterized prote 1.0 0.118 0.727 7e-51
UNIPROTKB|F1MEL5 1145 RASGRF2 "Uncharacterized prote 1.0 0.118 0.727 7e-51
UNIPROTKB|D6RAS9 1151 RASGRF2 "Ras-specific guanine 1.0 0.118 0.727 7.1e-51
MGI|MGI:109137 1189 Rasgrf2 "RAS protein-specific 1.0 0.114 0.727 7.7e-51
UNIPROTKB|O14827 1237 RASGRF2 "Ras-specific guanine 1.0 0.109 0.727 8.6e-51
UNIPROTKB|E2RTG6 1170 RASGRF2 "Uncharacterized prote 1.0 0.116 0.727 9.5e-51
UNIPROTKB|J9NYT7 1210 RASGRF2 "Uncharacterized prote 1.0 0.112 0.727 1e-50
UNIPROTKB|J9NUI8 1233 RASGRF2 "Uncharacterized prote 1.0 0.110 0.727 1.1e-50
UNIPROTKB|J9PAM7 1250 RASGRF2 "Uncharacterized prote 1.0 0.108 0.727 1.1e-50
RGD|69413 1190 Rasgrf2 "RAS protein-specific 1.0 0.114 0.727 1.3e-50
UNIPROTKB|F1RF08 RASGRF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 539 (194.8 bits), Expect = 7.0e-51, P = 7.0e-51
 Identities = 99/136 (72%), Positives = 118/136 (86%)

Query:     1 MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
             +LLPML IYQE+VRNH YSLQVL  CKQ  +F +LLK+ E  PAC+GR LE FLT+PM Q
Sbjct:   233 ILLPMLNIYQEFVRNHQYSLQVLANCKQNRDFDKLLKQYEANPACEGRMLETFLTYPMFQ 292

Query:    61 IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIV 120
             IPRYI+TLHELLAHTPH+HVERKSL+ A+ +LE+LSR MHDEVS+TEN+RKNLA+ER+IV
Sbjct:   293 IPRYIITLHELLAHTPHEHVERKSLEFAKSKLEELSRVMHDEVSDTENIRKNLAIERMIV 352

Query:   121 EGCDILLDVNQVFVRQ 136
             EGCDILLD +Q F+RQ
Sbjct:   353 EGCDILLDTSQTFIRQ 368
GO:0005737 "cytoplasm" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0007264 "small GTPase mediated signal transduction" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
UNIPROTKB|F1MEL5 RASGRF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D6RAS9 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:109137 Rasgrf2 "RAS protein-specific guanine nucleotide-releasing factor 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O14827 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTG6 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYT7 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI8 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAM7 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|69413 Rasgrf2 "RAS protein-specific guanine nucleotide-releasing factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2CEA7RGRF2_DANRENo assigned EC number0.72791.00.1093yesN/A
P70392RGRF2_MOUSENo assigned EC number0.72791.00.1143yesN/A
Q99JE4RGRF2_RATNo assigned EC number0.72791.00.1142yesN/A
O14827RGRF2_HUMANNo assigned EC number0.72791.00.1099yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query136
smart00325180 smart00325, RhoGEF, Guanine nucleotide exchange fa 1e-22
pfam00621179 pfam00621, RhoGEF, RhoGEF domain 6e-22
cd00160181 cd00160, RhoGEF, Guanine nucleotide exchange facto 5e-17
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information 
 Score = 87.4 bits (217), Expect = 1e-22
 Identities = 36/101 (35%), Positives = 61/101 (60%)

Query: 1   MLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 60
            L     IY EY  NH  +L++L + K+ P F + LK +E  P C+  +LE  L  P+ +
Sbjct: 80  KLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQR 139

Query: 61  IPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHD 101
           + +Y + L ELL HTP DH +R+ L+ A + +++L+ Q+++
Sbjct: 140 LTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVNE 180

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage. Length = 180
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain Back     alignment and domain information
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 136
KOG4424|consensus 623 100.0
smart00325180 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.94
KOG3523|consensus 695 99.93
cd00160181 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.92
KOG4305|consensus 1029 99.91
PF00621180 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho 99.88
KOG3521|consensus 846 99.87
KOG3520|consensus 1167 99.87
KOG3518|consensus 521 99.86
KOG2996|consensus 865 99.81
KOG3522|consensus 925 99.67
KOG3524|consensus 850 99.64
KOG3519|consensus 756 99.63
COG5422 1175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.51
KOG3531|consensus 1036 99.3
KOG2070|consensus 661 99.26
KOG0689|consensus 448 99.16
KOG4240|consensus 1025 99.08
KOG4269|consensus 1112 96.77
KOG3524|consensus 850 96.64
>KOG4424|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.9e-34  Score=219.63  Aligned_cols=134  Identities=22%  Similarity=0.495  Sum_probs=128.2

Q ss_pred             CCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809          2 LLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV   80 (136)
Q Consensus         2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~-~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~   80 (136)
                      ++|||++|+.|+.||++|..++..+. ++|.|+.++.++++++.|++++|.++||.||||||||.|||+++++++|++.|
T Consensus       141 lAPFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~  220 (623)
T KOG4424|consen  141 LAPFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDP  220 (623)
T ss_pred             hhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCc
Confidence            68999999999999999999999955 68999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcCCCcccccccccccC
Q psy10809         81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEGCDILLDVNQVFVRQ  136 (136)
Q Consensus        81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~~~~l~~~~R~~i~q  136 (136)
                      |+.++.+|++.|...+.++|.++++.|+.++|++++.++++ .+.+|+|+|++||+
T Consensus       221 D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~-e~dIV~PsreLiKE  275 (623)
T KOG4424|consen  221 DYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGN-EEDIVSPSRELIKE  275 (623)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccccCcHHHHhhc
Confidence            99999999999999999999999999999999999999954 56678999999985

>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>KOG3523|consensus Back     alignment and domain information
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes Back     alignment and domain information
>KOG3521|consensus Back     alignment and domain information
>KOG3520|consensus Back     alignment and domain information
>KOG3518|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>KOG3519|consensus Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG2070|consensus Back     alignment and domain information
>KOG0689|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG4269|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query136
1ki1_B 352 Guanine Nucleotide Exchange Region Of Intersectin I 2e-11
3jv3_A283 Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l 6e-11
3qbv_B 351 Structure Of Designed Orthogonal Interaction Betwee 1e-10
3gf9_A295 Crystal Structure Of Human Intersectin 2 Rhogef Dom 6e-10
3jzy_A 510 Crystal Structure Of Human Intersectin 2 C2 Domain 8e-10
3eo2_A231 Crystal Structure Of The Rhogef Domain Of Human Neu 3e-06
2z0q_A 352 Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln) 9e-06
2dfk_A 402 Crystal Structure Of The Cdc42-Collybistin Ii Compl 1e-04
2dx1_A 482 Crystal Structure Of Rhogef Protein Asef Length = 4 2e-04
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In Complex With Cdc42 Length = 352 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 28  QQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVERKSLQN 87
           + P+F + +KRLEM P C+G  L  F+  PM ++ RY + +  +L +TP +H +   L++
Sbjct: 121 EAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKH 180
Query: 88  ARQQLEDLSRQMHDEVSETEN 108
           A ++ E+L  Q+++ V E EN
Sbjct: 181 ALEKAEELCSQVNEGVREKEN 201
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283 Back     alignment and structure
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 351 Back     alignment and structure
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295 Back     alignment and structure
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 Back     alignment and structure
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human Neuroepithelial Cell- Transforming Gene 1 Protein Length = 231 Back     alignment and structure
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln) Length = 352 Back     alignment and structure
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 402 Back     alignment and structure
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef Length = 482 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query136
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 3e-28
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 1e-27
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 7e-27
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 6e-22
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 6e-21
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 1e-20
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 5e-20
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 3e-19
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 7e-19
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 3e-18
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 4e-18
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 8e-18
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 2e-17
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 5e-17
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 4e-16
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 3e-13
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 7e-11
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 1e-10
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 2e-08
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 3e-07
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 Back     alignment and structure
 Score =  104 bits (262), Expect = 3e-28
 Identities = 33/134 (24%), Positives = 60/134 (44%)

Query: 3   LPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIP 62
           LP L  Y  Y  N   +  +L   KQ       L+R    P  +   L  FL  P  ++ 
Sbjct: 102 LPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLV 161

Query: 63  RYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG 122
           +Y + L E+L HTP+D+ +++ L+ A   ++ +  +++ +  E+E       +  L    
Sbjct: 162 KYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQ 221

Query: 123 CDILLDVNQVFVRQ 136
            D L+D ++V    
Sbjct: 222 KDSLIDSSRVLCCH 235
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query136
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 100.0
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.98
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 99.98
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 99.97
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 99.97
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 99.97
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 99.97
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.97
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 99.97
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 99.97
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 99.96
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 99.96
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 99.96
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 99.95
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 99.95
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 99.95
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 99.92
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.92
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 99.91
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 99.89
2lg1_A 185 A-kinase anchor protein 13; metal binding protein; 98.44
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
Probab=100.00  E-value=3.1e-32  Score=207.02  Aligned_cols=135  Identities=20%  Similarity=0.306  Sum_probs=125.5

Q ss_pred             CCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCch
Q psy10809          2 LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHVE   81 (136)
Q Consensus         2 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~d   81 (136)
                      ++|.|++|..||.|++.|...+.++.+++.|..|++.|+..+.+.+++|.+||++||||||||+|||++|+|+||++|||
T Consensus       125 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d  204 (402)
T 2dfk_A          125 HQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSD  204 (402)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred             HHhhhHHHHHHHHhhHHHHHHHHHHHcChHHHHHHHHHHhhhhcccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcC
Confidence            57889999999999999999999988889999999999887778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHHHHhcC-CCcccccccccccC
Q psy10809         82 RKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVERLIVEG-CDILLDVNQVFVRQ  136 (136)
Q Consensus        82 ~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~~i~~~-~~~l~~~~R~~i~q  136 (136)
                      |..+..|++.|+.++..||+.+++.|+.+++.+++.+|.|. ...++.++|.||++
T Consensus       205 ~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~~  260 (402)
T 2dfk_A          205 YRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYT  260 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTCCSSCGGGTCCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccceEEe
Confidence            99999999999999999999999999999999999999643 23467999999874
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 136
d1ki1b1210 a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( 7e-17
d1xcga1228 a.87.1.1 (A:714-941) Rho guanine nucleotide exchan 4e-15
d1by1a_209 a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI 5e-14
d2dfka1203 a.87.1.1 (A:37-239) Rho guanine nucleotide exchang 9e-14
d1txda1234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 3e-13
d1dbha1207 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H 3e-12
d1foea1206 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in 1e-11
d1f5xa_208 a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta 4e-11
d1kz7a1195 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse 9e-11
d1ntya1184 a.87.1.1 (A:1231-1414) Triple functional domain pr 9e-07
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 7e-17
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 1   MLLPMLGIYQEYVRNHHYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMH 59
             LP +  Y  +         ++ +   + P+F + +KRLEM P C+G  L  F+  PM 
Sbjct: 93  AQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQ 152

Query: 60  QIPRYIVTLHELLAHTPHDHVERKSLQNARQQLEDLSRQMHDEVSETENLRK 111
           ++ RY + +  +L +TP +H +   L++A ++ E+L  Q+++ V E EN  +
Sbjct: 153 RVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDR 204
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query136
d1ki1b1210 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.96
d1xcga1228 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.96
d1txda1234 Rho guanine nucleotide exchange factor 12 {Human ( 99.95
d2dfka1203 Rho guanine nucleotide exchange factor 9, Collybis 99.95
d1foea1206 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 99.93
d1f5xa_208 RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} 99.93
d1kz7a1195 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 99.92
d1by1a_209 beta-pix {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1ntya1184 Triple functional domain protein TRIO {Human (Homo 99.89
d1dbha1207 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.89
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-30  Score=177.05  Aligned_cols=116  Identities=28%  Similarity=0.564  Sum_probs=111.4

Q ss_pred             CCchhhhHHHHHhcHHHHHHHHHH-HhcChhHHHHHHHHHcCcCCCCCChhHHhhchhccchhhHHHHHHHHhcCCCCCc
Q psy10809          2 LLPMLGIYQEYVRNHHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQIPRYIVTLHELLAHTPHDHV   80 (136)
Q Consensus         2 ~~~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~l~l~~~L~~PvQRl~rY~LLL~~l~k~t~~~~~   80 (136)
                      ++|+|++|..||.+++.+...+.+ +.+++.|..|++.++..+.|++++|.+||+.||||++||++||++|+|+||++||
T Consensus        94 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~llL~~l~k~t~~~~~  173 (210)
T d1ki1b1          94 QLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHP  173 (210)
T ss_dssp             HGGGGTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTST
T ss_pred             HHHHhhHHHHHHHcChHHHHHHHHHHhhcHHHHHHHHHHhhCcccccCCHHHHHHhHHhHHHHHHHHHHHHHHhCCCCCc
Confidence            578999999999999999999998 4579999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHHHH
Q psy10809         81 ERKSLQNARQQLEDLSRQMHDEVSETENLRKNLAVER  117 (136)
Q Consensus        81 d~~~l~~a~~~i~~~~~~in~~~~~~e~~~~l~~~~~  117 (136)
                      |+..+..|++.+++++..||+.++..|+..+|.++|.
T Consensus       174 d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~lQ~  210 (210)
T d1ki1b1         174 DHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA  210 (210)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999873
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure