Psyllid ID: psy10812

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720---
MRSTRVVGPLAAVKLYAGRRSIGCCEGESAARQATPRASFQQDSPQHSSKAGVVITSFRKSQRSLLLIFSTRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccEEHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccc
ccccEEEccHHHHHHHHcccccccccccccEcccHHHHHHHHHccccccccccHHHcccccHHHEEEHEccccccHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccEHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccHHHHcccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccEEEEEEHcHHHHHcccccccccccccEEcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHcccHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccEEEEEEHcHHHHHccccccccccccccEcHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccccccc
mrstrvvgPLAAVKLYAGrrsigccegesaarqatprasfqqdspqhsskagVVITSFRKSQRSLLLIFSTRSSTSTAATAFAIAtsassnprdispveeVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEivctpnllpaEYKAATQLTRMLTKEECTKHEtnlqdllappqvankenieTLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWlksekltkaphivlftqrfntvankenieTLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWlksekltkaphiVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKsklqhcdppcipylgMYLTEFarldeeyptftkegetnlvNFTKIRRMANTIRDItryqntpykieynpkvanyildtswiiededMANTIRDItqyqntpykieynpkvanyildtswiiededvlhqksmeieprttgrpscaqlpnlplmvDAEEKFHNLKSklqhcdppcipylgMYLTelatldevyptftkegetnlVYFTKIrrrklkplqHQQQQQQQQQQQQMEDEVSSTSTAATAFAIAtsassnprdispveeVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF
mrstrvvgplaavklyagrrSIGCCEGESAARQATPrasfqqdspqhssKAGVVITSFRKSQRSLLLIFSTRSSTSTAATAFAiatsassnprdispveevrnkrkesvlstattmrVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHEtnlqdllappqvaNKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFtqrfntvanKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPtftkegetnlvnftkirrmantirditryqntpykieynpkVANYILDTSWIIEDEDMANTIRDITQYqntpykieynPKVANYILDTSWIIEDEDVLHQKSMeieprttgrpscAQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIatsassnprdispveevrnkrkesvlstattmrVLNVLRHWISKHTQDFIQDKELRYMTLEFLeeivctpnldf
MRSTRVVGPLAAVKLYAGRRSIGCCEGESAARQATPRASFQQDSPQHSSKAGVVITSFRKSQRSLLLifstrsststaatafaiatsassNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLqhqqqqqqqqqqqqMEDEVsststaatafaiatsassNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF
******VGPLAAVKLYAGRRSIGCC***************************VVITSFRKSQRSLLLIFS****************************************STATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAP*QVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLH********************NLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIR****************************************************************STATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT*****
****************************************************VVITSFRKSQRSLLLIFSTRSSTSTAATAFA*********************RKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLT********************************************************************************VANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWI******L****MEIEPRTTGRPSCAQ******************SKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQ***************************************************TTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNL**
MRSTRVVGPLAAVKLYAGRRSIGCCE************************AGVVITSFRKSQRSLLLIFSTRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRK****************************AATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF
**STRVVGPLAAVKLYAGRRSIGCCEGESAARQATPRASFQQDSPQHSSKAGVVITSFRKSQRSLLLIFSTRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIATSASS****ISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF
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SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSTRVVGPLAAVKLYAGRRSIGCCEGESAARQATPRASFQQDSPQHSSKAGVVITSFRKSQRSLLLIFSTRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query723 2.2.26 [Sep-21-2011]
P288181244 Ras-specific guanine nucl yes N/A 0.525 0.305 0.394 1e-84
P276711262 Ras-specific guanine nucl yes N/A 0.506 0.290 0.396 4e-82
A2CEA71244 Ras-specific guanine nucl yes N/A 0.443 0.258 0.417 1e-77
O148271237 Ras-specific guanine nucl yes N/A 0.443 0.259 0.404 3e-76
Q99JE41190 Ras-specific guanine nucl yes N/A 0.443 0.269 0.398 6e-75
P703921189 Ras-specific guanine nucl no N/A 0.446 0.271 0.390 7e-75
Q139721275 Ras-specific guanine nucl no N/A 0.446 0.253 0.403 2e-74
Q622451319 Son of sevenless homolog no N/A 0.434 0.238 0.261 2e-37
Q55GH91172 Ras guanine nucleotide ex yes N/A 0.430 0.265 0.284 1e-36
Q078891333 Son of sevenless homolog no N/A 0.468 0.254 0.269 4e-36
>sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus norvegicus GN=Rasgrf1 PE=1 SV=1 Back     alignment and function desciption
 Score =  314 bits (805), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 268/464 (57%), Gaps = 84/464 (18%)

Query: 37   RASFQQDSPQHSSKAGVVITSFRKSQRSLLLIFSTRSSTSTAATAFAIATS-ASSNP--- 92
            R    Q+ P  +  +G+++T          L+ S RS  S A +AFAIAT+ A+ +P   
Sbjct: 840  RNRITQEFPLFNYNSGIMMTCRD-------LMDSNRSPLS-ATSAFAIATAGANESPANK 891

Query: 93   ---RDISPV-----EEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTL 144
               R +S        + RN  KE V+  A T RVLNVLRHW++KH+QDF  D  L+Y  +
Sbjct: 892  EIYRRMSLANTGYSSDQRNIDKEFVIRRAATNRVLNVLRHWVTKHSQDFETDDLLKYKVI 951

Query: 145  EFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSAL 204
             FLEE++  P+LLP E KAA  + R LT+EE                             
Sbjct: 952  CFLEEVMHDPDLLPQERKAAANIMRTLTQEE----------------------------- 982

Query: 205  EIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSA 264
             I E  + +D                            ++L T+   T    E  E  SA
Sbjct: 983  -ITENHSMLD---------------------------ELLLMTEGVKT----EPFENHSA 1010

Query: 265  LEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILN 324
            +EIAEQ+T +D+ +FKSI  EEF GQ W+K++K  + P+I+  T+ FN +S L+A+EIL 
Sbjct: 1011 MEIAEQLTLLDHLVFKSIPYEEFFGQGWMKADKNERTPYIMKTTRHFNHISNLIASEILR 1070

Query: 325  RSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTY 384
               +S R   IEKW+AVADI +CL+N+N VL I S++N S++FRLKKTW KVSK TK  +
Sbjct: 1071 NEEVSARASTIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLF 1130

Query: 385  DELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFT 444
            D+L+++V ++  F N +  L++CDPPC+PYLGMYLT+ A L+E  P +T++G   LVNF+
Sbjct: 1131 DKLQKLVSSDGRFKNLRETLRNCDPPCVPYLGMYLTDLAFLEEGTPNYTEDG---LVNFS 1187

Query: 445  KIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDM 488
            K+R +++ IR+I ++Q T YKIE  PKV  Y++D +++++DE +
Sbjct: 1188 KMRMISHIIREIRQFQQTTYKIEPQPKVTQYLVDETFVLDDESL 1231
Promotes the exchange of Ras-bound GDP by GTP.
Rattus norvegicus (taxid: 10116)
>sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus GN=Rasgrf1 PE=1 SV=2 Back     alignment and function description
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio GN=rasgrf2 PE=3 SV=1 Back     alignment and function description
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens GN=RASGRF2 PE=1 SV=2 Back     alignment and function description
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus norvegicus GN=Rasgrf2 PE=1 SV=1 Back     alignment and function description
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus GN=Rasgrf2 PE=1 SV=2 Back     alignment and function description
>sp|Q13972|RGRF1_HUMAN Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=1 Back     alignment and function description
>sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus GN=Sos1 PE=1 SV=2 Back     alignment and function description
>sp|Q55GH9|GEFW_DICDI Ras guanine nucleotide exchange factor W OS=Dictyostelium discoideum GN=gefW PE=2 SV=1 Back     alignment and function description
>sp|Q07889|SOS1_HUMAN Son of sevenless homolog 1 OS=Homo sapiens GN=SOS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query723
189233725 1406 PREDICTED: similar to AGAP001238-PA [Tri 0.557 0.286 0.510 1e-117
350407614 1513 PREDICTED: ras-specific guanine nucleoti 0.575 0.274 0.476 1e-110
340717199 1513 PREDICTED: ras-specific guanine nucleoti 0.575 0.274 0.474 1e-109
307194740 1381 Ras-specific guanine nucleotide-releasin 0.560 0.293 0.484 1e-108
383858662 1675 PREDICTED: ras-specific guanine nucleoti 0.573 0.247 0.465 1e-107
307177674 1156 Ras-specific guanine nucleotide-releasin 0.576 0.360 0.465 1e-107
380018321 1401 PREDICTED: LOW QUALITY PROTEIN: ras-spec 0.575 0.296 0.468 1e-107
328793677 1401 PREDICTED: ras-specific guanine nucleoti 0.575 0.296 0.466 1e-106
328723328 1489 PREDICTED: ras-specific guanine nucleoti 0.587 0.285 0.446 1e-102
405957032 1389 Ras-specific guanine nucleotide-releasin 0.474 0.246 0.435 3e-92
>gi|189233725|ref|XP_970314.2| PREDICTED: similar to AGAP001238-PA [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/492 (51%), Positives = 324/492 (65%), Gaps = 89/492 (18%)

Query: 16   YAGRRSIGCCEGESAARQATPRASFQQDSPQHSSKAGVVITSFRKSQRSLLLIFSTRSST 75
            Y  RRS+   EGE+ +   T R+SFQ DSPQ  SKAGVVITSFR+S+R        RSST
Sbjct: 971  YGSRRSMQ--EGEATS---TARSSFQHDSPQKPSKAGVVITSFRQSKR--------RSST 1017

Query: 76   STAATAFAIATSASSNPRDISPVEEV------------RNKRKESVLSTATTMRVLNVLR 123
            S+AA AFAIATS SSNPRD+SP                RN+ KE+V+STA TMRVLNVLR
Sbjct: 1018 SSAAAAFAIATSGSSNPRDLSPSARGGGMMDQDEFAMERNRYKENVISTACTMRVLNVLR 1077

Query: 124  HWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNL 183
            HWISKH QDF  D +L+ +T+EFL++I+ +PNLLPAE+KAA QL R+L     TK E+  
Sbjct: 1078 HWISKHAQDFENDHKLKNLTIEFLDDIIYSPNLLPAEHKAAAQLLRLL-----TKEES-- 1130

Query: 184  QDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHI 243
                                     + + +D  IF+                 L  AP  
Sbjct: 1131 -------------------------ESSKVD--IFQ-----------------LVSAP-- 1144

Query: 244  VLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPH 303
                    +  +KE+IETLSALEIAEQ+TYID+ IF SI SEEFLGQAW+ ++K ++APH
Sbjct: 1145 --------STPSKESIETLSALEIAEQLTYIDHQIFISISSEEFLGQAWMTNDKTSRAPH 1196

Query: 304  IVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNN 363
            I+L T+RFN +S LVA+EIL R +L  RV  IEKW AVADI +CL+NFNGVL I SA  N
Sbjct: 1197 ILLMTKRFNDVSCLVASEILRRPSLCARVAAIEKWAAVADISRCLHNFNGVLQICSAFTN 1256

Query: 364  SSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFA 423
            SSVFRLKKTWDKVSKTT+QT ++L+ +V ++  F + +  L  CDPPCIPYLG+YLT+ +
Sbjct: 1257 SSVFRLKKTWDKVSKTTRQTIEKLQNIVSSDGRFRSLRDALHRCDPPCIPYLGLYLTDLS 1316

Query: 424  RLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWII 483
             ++E  P FT++G   L+NF+K+R +A+ IR+I  +Q TPYKIE  PKVANY+LD+S  +
Sbjct: 1317 FIEEGTPNFTQDG---LLNFSKMRMIAHVIREIRHFQQTPYKIELIPKVANYLLDSSLWM 1373

Query: 484  EDEDMANTIRDI 495
            +DE++ NT  +I
Sbjct: 1374 DDEELYNTSLEI 1385

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350407614|ref|XP_003488143.1| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340717199|ref|XP_003397074.1| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307194740|gb|EFN76974.1| Ras-specific guanine nucleotide-releasing factor 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383858662|ref|XP_003704818.1| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307177674|gb|EFN66720.1| Ras-specific guanine nucleotide-releasing factor 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380018321|ref|XP_003693080.1| PREDICTED: LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|328793677|ref|XP_001122143.2| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|328723328|ref|XP_001952636.2| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|405957032|gb|EKC23270.1| Ras-specific guanine nucleotide-releasing factor 2 [Crassostrea gigas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query723
ZFIN|ZDB-GENE-060504-11244 rasgrf2b "Ras protein-specific 0.322 0.187 0.508 6.5e-63
ZFIN|ZDB-GENE-090311-281256 si:ch211-234p18.3 "si:ch211-23 0.316 0.182 0.517 7.1e-63
UNIPROTKB|F1LM431243 Rasgrf1 "Ras-specific guanine 0.430 0.250 0.407 1.7e-62
RGD|6203951244 Rasgrf1 "RAS protein-specific 0.430 0.25 0.407 1.7e-62
UNIPROTKB|F1LS731252 Rasgrf1 "Ras-specific guanine 0.430 0.248 0.407 1.8e-62
UNIPROTKB|O148271237 RASGRF2 "Ras-specific guanine 0.313 0.183 0.523 7.5e-62
UNIPROTKB|F1RF081144 RASGRF2 "Uncharacterized prote 0.322 0.203 0.504 1.2e-61
UNIPROTKB|F1MEL51145 RASGRF2 "Uncharacterized prote 0.313 0.198 0.515 1.2e-61
RGD|694131190 Rasgrf2 "RAS protein-specific 0.313 0.190 0.515 1.4e-61
UNIPROTKB|Q99JE41190 Rasgrf2 "Ras-specific guanine 0.313 0.190 0.515 1.4e-61
ZFIN|ZDB-GENE-060504-1 rasgrf2b "Ras protein-specific guanine nucleotide-releasing factor 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 652 (234.6 bits), Expect = 6.5e-63, P = 6.5e-63
 Identities = 122/240 (50%), Positives = 179/240 (74%)

Query:   257 ENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSK 316
             E  E+LSA+EIAEQ+T +D+ +F+SI  EEFLGQ W+K++K  + P+I+  +Q FN MS 
Sbjct:  1003 ECFESLSAMEIAEQITLLDHIVFRSIPYEEFLGQGWMKTDKTERTPYIMKTSQHFNDMSN 1062

Query:   317 LVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKV 376
             LVA++I++ +++  R   IEKW+AVADI +CLNN+NGVL I SA+N S+++RLKKTW KV
Sbjct:  1063 LVASQIMSHTDVGSRAGSIEKWVAVADICRCLNNYNGVLEITSALNRSAIYRLKKTWAKV 1122

Query:   377 SKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEG 436
              K TK   D+L++ V +E  F N +  L++C+PPC+PYLGMYLT+ A ++E  P FT+EG
Sbjct:  1123 CKQTKALMDKLQKTVSSEGRFKNLRETLKNCNPPCVPYLGMYLTDLAFIEEGTPNFTEEG 1182

Query:   437 ETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDIT 496
                LVNF+K+R +++ IR+I ++Q TPY+IE+ PKV  Y+LD + +I DED   T+ D++
Sbjct:  1183 ---LVNFSKMRMISHIIREIRQFQQTPYRIEHQPKVTQYLLDKT-LIMDED---TLYDLS 1235
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0007264 "small GTPase mediated signal transduction" evidence=IEA
GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA
GO:0005516 "calmodulin binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
ZFIN|ZDB-GENE-090311-28 si:ch211-234p18.3 "si:ch211-234p18.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LM43 Rasgrf1 "Ras-specific guanine nucleotide-releasing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|620395 Rasgrf1 "RAS protein-specific guanine nucleotide-releasing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LS73 Rasgrf1 "Ras-specific guanine nucleotide-releasing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O14827 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF08 RASGRF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MEL5 RASGRF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|69413 Rasgrf2 "RAS protein-specific guanine nucleotide-releasing factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99JE4 Rasgrf2 "Ras-specific guanine nucleotide-releasing factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query723
pfam00617185 pfam00617, RasGEF, RasGEF domain 3e-70
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 4e-65
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 2e-64
pfam00617185 pfam00617, RasGEF, RasGEF domain 1e-09
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 3e-08
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 6e-07
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 2e-06
cd06224122 cd06224, REM, Guanine nucleotide exchange factor f 2e-06
cd06224122 cd06224, REM, Guanine nucleotide exchange factor f 4e-06
smart00229127 smart00229, RasGEFN, Guanine nucleotide exchange f 2e-04
smart00229127 smart00229, RasGEFN, Guanine nucleotide exchange f 2e-04
PRK04239110 PRK04239, PRK04239, hypothetical protein; Provisio 0.003
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information 
 Score =  227 bits (580), Expect = 3e-70
 Identities = 77/187 (41%), Positives = 117/187 (62%), Gaps = 4/187 (2%)

Query: 262 LSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANE 321
           L  LE+A Q+T I+  +F +I   E L  AW K +    +P+I  F  RFN +S+ VA E
Sbjct: 3   LDPLELARQLTLIESELFSAIDPRELLDSAWGKKDS-KLSPNIEAFISRFNQLSRWVATE 61

Query: 322 ILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTK 381
           IL+  +L +R  VI+K+I +A   + LNNFN ++ IIS +N+S + RLKKTW+ VSK  K
Sbjct: 62  ILSEEDLKKRAKVIKKFIKIAQHCRELNNFNSLMAIISGLNSSPISRLKKTWELVSKKYK 121

Query: 382 QTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLV 441
           +  +EL +++   +NF N++  L+  +PPCIP+LG+YL +   ++E  P F   G   L+
Sbjct: 122 KLLEELEELMSPSKNFKNYREALKKANPPCIPFLGLYLKDLTFIEEGNPDFLDNG---LI 178

Query: 442 NFTKIRR 448
           NF K R+
Sbjct: 179 NFEKRRK 185

Guanine nucleotide exchange factor for Ras-like small GTPases. Length = 185
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|100121 cd06224, REM, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>gnl|CDD|100121 cd06224, REM, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>gnl|CDD|214571 smart00229, RasGEFN, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>gnl|CDD|214571 smart00229, RasGEFN, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 723
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 100.0
KOG3629|consensus728 100.0
KOG2378|consensus573 100.0
KOG3542|consensus1283 100.0
KOG3417|consensus 840 99.98
KOG3541|consensus477 99.97
KOG3417|consensus840 99.59
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 99.58
KOG2378|consensus573 99.53
KOG3629|consensus 728 99.49
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 99.43
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 98.96
KOG3542|consensus 1283 98.51
smart00229127 RasGEFN Guanine nucleotide exchange factor for Ras 98.22
cd06224122 REM Guanine nucleotide exchange factor for Ras-lik 98.02
PF00618104 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR00 97.58
KOG3541|consensus477 97.11
smart00229127 RasGEFN Guanine nucleotide exchange factor for Ras 96.67
cd06224122 REM Guanine nucleotide exchange factor for Ras-lik 94.25
PF00618104 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR00 84.47
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
Probab=100.00  E-value=5.8e-52  Score=430.35  Aligned_cols=239  Identities=37%  Similarity=0.722  Sum_probs=225.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCCh-hHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHH
Q psy10812        259 IETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAP-HIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEK  337 (723)
Q Consensus       259 l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~p-ni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~k  337 (723)
                      +++++|.|||+|||++|+++|++|++.||++..|.+.+....+| ||.+++++||.++.||+.+||.++++++|++++++
T Consensus         1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~   80 (242)
T smart00147        1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK   80 (242)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999887777788 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcC-CCCccccc
Q psy10812        338 WIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCD-PPCIPYLG  416 (723)
Q Consensus       338 fI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~-~P~IPflG  416 (723)
                      ||+||.+|+++|||||++||++||++++|+||++||+.|++++++.|++|++++++++||++||+.++++. +|||||+|
T Consensus        81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg  160 (242)
T smart00147       81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG  160 (242)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             cchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCC-hHHHHHHhccCCccchhhhhhHHHhh
Q psy10812        417 MYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYN-PKVANYILDTSWIIEDEDMANTIRDI  495 (723)
Q Consensus       417 ~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~-~~i~~~L~~~~~~~~~~~~~~~~~~l  495 (723)
                      +||+||+++++|+|++.++|   +|||.|+++++++|.++..||+.+|+|.++ +.+|.||....               
T Consensus       161 ~~l~dl~~~~~~~~~~~~~~---~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~---------------  222 (242)
T smart00147      161 VLLKDLTFIDEGNPDFLENG---LVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLL---------------  222 (242)
T ss_pred             HHHHHHHHHHccCcccccCC---cccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH---------------
Confidence            99999999999999999888   999999999999999999999999999999 99999986320               


Q ss_pred             hhccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCCC
Q psy10812        496 TQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT  539 (723)
Q Consensus       496 ~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~  539 (723)
                                              ....++|++|++|+++|||.
T Consensus       223 ------------------------~~~~~~~~~~~~S~~~EP~~  242 (242)
T smart00147      223 ------------------------DHLDEEEELYQLSLKIEPRV  242 (242)
T ss_pred             ------------------------hhcCCHHHHHHHHHHhCCCC
Confidence                                    01234668999999999983

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>KOG2378|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>KOG2378|consensus Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved [] Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query723
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 4e-65
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 6e-12
3ksy_A1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 1e-36
3ksy_A1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 4e-04
1xd2_C484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 2e-36
1xd2_C484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 4e-04
2ii0_A490 Crystal Structure Of Catalytic Domain Of Son Of Sev 2e-36
2ii0_A490 Crystal Structure Of Catalytic Domain Of Son Of Sev 4e-04
1bkd_S477 Complex Of Human H-Ras With Human Sos-1 Length = 47 2e-36
1bkd_S477 Complex Of Human H-Ras With Human Sos-1 Length = 47 4e-04
1xd4_A852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 2e-36
1xd4_A852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 4e-04
1nvu_S481 Structural Evidence For Feedback Activation By Rasg 2e-36
1nvu_S481 Structural Evidence For Feedback Activation By Rasg 4e-04
1xdv_A847 Experimentally Phased Structure Of Human The Son Of 2e-36
1xdv_A847 Experimentally Phased Structure Of Human The Son Of 4e-04
3qxl_A271 Crystal Structure Of The Cdc25 Domain From Ral-Spec 5e-27
2byv_E999 Structure Of The Camp Responsive Exchange Factor Ep 9e-24
4f7z_A999 Conformational Dynamics Of Exchange Protein Directl 9e-24
3cf6_E694 Structure Of Epac2 In Complex With Cyclic-Amp And R 1e-23
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (627), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 167/226 (73%), Gaps = 3/226 (1%)
Query: 263 SALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 322
           SALEIAEQ+T +D+ +FKSI  EEF GQ W+K+EK  + P+I+  T+ FN +S  +A+EI
Sbjct: 5   SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64
Query: 323 LNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQ 382
           +   ++S R   IEKW+AVADI +CL+N+N VL I S++N S++FRLKKTW KVSK TK 
Sbjct: 65  IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKS 124
Query: 383 TYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVN 442
             D+L+++V ++  F N +  L++CDPPC+PYLGMYLT+   ++E  P +T++G   LVN
Sbjct: 125 LLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG---LVN 181
Query: 443 FTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDM 488
           F+K+R +++ IR+I ++Q T YKI+  PKV  Y+LD S+++++E +
Sbjct: 182 FSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESL 227
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 Back     alignment and structure
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 Back     alignment and structure
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 Back     alignment and structure
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query723
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 6e-91
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 2e-17
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 3e-10
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 2e-85
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 5e-08
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 8e-83
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 4e-08
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 1e-82
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 2e-07
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 3e-79
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 3e-06
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 2e-77
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 2e-06
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 2e-36
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
 Score =  283 bits (725), Expect = 6e-91
 Identities = 117/278 (42%), Positives = 173/278 (62%), Gaps = 43/278 (15%)

Query: 262 LSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANE 321
            SALEIAEQ+T +D+ +FKSI  EEF GQ W+K+EK  + P+I+  T+ FN +S  +A+E
Sbjct: 4   GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASE 63

Query: 322 ILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTK 381
           I+   ++S R   IEKW+AVADI +CL+N+N VL I S++N S++FRLKKTW KVSK TK
Sbjct: 64  IIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTK 123

Query: 382 QTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLV 441
              D+L+++V ++  F N +  L++CDPPC+PYLGMYLT+   ++E  P +T++G   LV
Sbjct: 124 SLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG---LV 180

Query: 442 NFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNT 501
           NF+K+R +++ IR+I ++Q T YKI+  PKV  Y+LD S                     
Sbjct: 181 NFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDES--------------------- 219

Query: 502 PYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT 539
                               + DE+ L++ S+ IEP+ 
Sbjct: 220 -------------------FMLDEESLYESSLLIEPKL 238
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query723
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 100.0
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 100.0
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 100.0
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 100.0
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 100.0
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 99.83
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 99.78
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 99.74
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 99.73
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 99.73
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 99.72
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.72
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.65
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
Probab=100.00  E-value=7.4e-63  Score=558.70  Aligned_cols=350  Identities=29%  Similarity=0.544  Sum_probs=282.6

Q ss_pred             hhhhhccchhcchhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhhhhccccc
Q psy10812        101 VRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHE  180 (723)
Q Consensus       101 ~~~~rke~v~~~~iqlRVlnVLk~Wve~h~~DF~~~~~L~~~l~~FL~~i~~~~~~lp~~~k~a~~llr~L~~~~~~~~~  180 (723)
                      .+++++++  ..++|+||++||+.||++||+||+.|+.+...|.+|++.+...     ..++.+..+.+.+.+.......
T Consensus       115 ~~~~~~~~--~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~  187 (490)
T 2ii0_A          115 LKRFRKEY--IQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGK-----AMKKWVESITKIIQRKKIARDN  187 (490)
T ss_dssp             HHHHHHHT--HHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTCCCT-----TTHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHhh--hhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHhcccC
Confidence            44555554  3599999999999999999999999999999999999885432     2355667777776543211000


Q ss_pred             cccccccCCCCCCCchhhcccCHHHHhhhhccccccccccCchhhhhhhhhhhcccccCCCccccccccccccccccccC
Q psy10812        181 TNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIE  260 (723)
Q Consensus       181 ~~~~~~~~p~~~~~~~~~~~lsa~eiaeq~t~ld~~~~~~i~~~e~l~~~w~~~~k~~~~p~i~~~tq~~~~~~~~~~l~  260 (723)
                       ....                       .+++ +. ...++.        |...               ........+++
T Consensus       188 -~~~~-----------------------~~~~-~~-~~p~~~--------~~~~---------------~~~~~~~~~ll  218 (490)
T 2ii0_A          188 -GPGH-----------------------NITF-QS-SPPTVE--------WHIS---------------RPGHIETFDLL  218 (490)
T ss_dssp             -------------------------------C-CS-CCCCCC--------CCSS---------------CTTCGGGCCTT
T ss_pred             -CCCc-----------------------cccc-CC-CCCccc--------cccC---------------CCCCcccchhh
Confidence             0000                       0000 00 000000        0000               00011345788


Q ss_pred             CCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHH
Q psy10812        261 TLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIA  340 (723)
Q Consensus       261 ~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kfI~  340 (723)
                      +++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.+++||+++||.++++++||++|++||+
T Consensus       219 ~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~  298 (490)
T 2ii0_A          219 TLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIE  298 (490)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987666679999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccccccchh
Q psy10812        341 VADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLT  420 (723)
Q Consensus       341 IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPflG~~L~  420 (723)
                      ||.+|+++|||||+|||++||++++|+||++||+.|+++.++.|++|..+  +++||++||.+++++.+|||||||+||+
T Consensus       299 iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L~  376 (490)
T 2ii0_A          299 ILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLT  376 (490)
T ss_dssp             HHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHH--HHHHHHHHHHHHHTCCSSCBCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHh--chHHHHHHHHHHhccCCCcccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999987  3689999999999999999999999999


Q ss_pred             chhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHhhhhccC
Q psy10812        421 EFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQN  500 (723)
Q Consensus       421 DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~l~~~~~  500 (723)
                      ||+|+++|||+++++|+..+|||+|+++++++|.+|++||+.+|+|.+++.+++||.+.....                +
T Consensus       377 DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~----------------~  440 (490)
T 2ii0_A          377 NILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMG----------------N  440 (490)
T ss_dssp             HHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHHHHGGGSSCCCSCCCCHHHHHHHHTCCTTT----------------T
T ss_pred             HHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHhccccc----------------c
Confidence            999999999999976656699999999999999999999999999999999999997432110                0


Q ss_pred             CCcccccchhhHhhhhhcCccccchhHHhhccccccCCCCCC
Q psy10812        501 TPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGR  542 (723)
Q Consensus       501 ~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~~~~  542 (723)
                      .                  .-.+.||+||++|+++|||....
T Consensus       441 ~------------------~e~~~ed~ly~~Sl~~EPr~~~~  464 (490)
T 2ii0_A          441 S------------------MEKEFTDYLFNKSLEIEPRNPKP  464 (490)
T ss_dssp             S------------------CHHHHHHHHHHHHHHHSCCTTSC
T ss_pred             C------------------chhhhHHHHHHHHHhhCCCCCCC
Confidence            0                  00012678999999999998654
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 723
d1nvus_481 a.117.1.1 (S:) Son of sevenless protein homolog 1 7e-67
d1nvus_481 a.117.1.1 (S:) Son of sevenless protein homolog 1 2e-08
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  226 bits (577), Expect = 7e-67
 Identities = 96/441 (21%), Positives = 180/441 (40%), Gaps = 90/441 (20%)

Query: 104 KRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKA 163
           KR          +RVLNV RHW+  H  DF +D  L     EF+  +        A  K 
Sbjct: 110 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRG-----KAMKKW 164

Query: 164 ATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRS 223
              +T+++ +++  +      ++                                     
Sbjct: 165 VESITKIIQRKKIARDNGPGHNI------------------------------------- 187

Query: 224 EEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIR 283
                           +P  V +           ++ TL  +EIA Q+T ++  ++++++
Sbjct: 188 ------------TFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQ 235

Query: 284 SEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVAD 343
             E +G  W K +K   +P+++   +    ++      I+   NL +RV V+ + I +  
Sbjct: 236 PSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQ 295

Query: 344 ILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSK 403
           + + LNNFNGVL ++SAMN+S V+RL  T++++    K+  +E  ++ +  +++  + +K
Sbjct: 296 VFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAK 353

Query: 404 LQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTP 463
           L+  +PPC+P+ G+YLT   + +E  P   K     L+NF+K R++A    +I +YQN P
Sbjct: 354 LRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQP 413

Query: 464 YKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIE 523
           Y +     +  +  + + +    +                                   E
Sbjct: 414 YCLRVESDIKRFFENLNPMGNSME----------------------------------KE 439

Query: 524 DEDVLHQKSMEIEPRTTGRPS 544
             D L  KS+EIEPR      
Sbjct: 440 FTDYLFNKSLEIEPRNPKPLP 460
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query723
d1nvus_481 Son of sevenless protein homolog 1 (sos-1) {Human 100.0
d1nvus_481 Son of sevenless protein homolog 1 (sos-1) {Human 99.68
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-60  Score=531.84  Aligned_cols=395  Identities=26%  Similarity=0.478  Sum_probs=303.3

Q ss_pred             Eechhhcccchhhh--ccccccchhhHHH--HHHHHhcCCCCCCCCc------------hHHhhhhhccchhcchhhhHH
Q psy10812         55 ITSFRKSQRSLLLI--FSTRSSTSTAATA--FAIATSASSNPRDISP------------VEEVRNKRKESVLSTATTMRV  118 (723)
Q Consensus        55 ~~~~~~~~~~~~~~--~~~r~~~~~~a~a--f~i~t~~~~~~~~~~~------------~~~~~~~rke~v~~~~iqlRV  118 (723)
                      .|+....+....-+  .+=|++++ +..-  ..+..+....+.+...            ....+..+++  ...++++||
T Consensus        48 Lt~~~~~D~~F~~~FLlTYRsF~T-p~eLL~~Li~Rf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~rV  124 (481)
T d1nvus_          48 LTYHMYADPNFVRTFLTTYRSFCK-PQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKE--YIQPVQLRV  124 (481)
T ss_dssp             HTCSSCCCHHHHHHHHHHGGGTSC-HHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCCCCCHHHHHHHHH--THHHHHHHH
T ss_pred             hccCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHhcCCCCcchhhHHHHhhcccchhHHHHHHHHHH--hhhhHHHHH
Confidence            34443344434333  35578887 4444  4445555444433211            1122233343  357899999


Q ss_pred             HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCchhh
Q psy10812        119 LNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENI  198 (723)
Q Consensus       119 lnVLk~Wve~h~~DF~~~~~L~~~l~~FL~~i~~~~~~lp~~~k~a~~llr~L~~~~~~~~~~~~~~~~~p~~~~~~~~~  198 (723)
                      +++|+.||+.||+||.+++.+...+.+|+..+....     ..+.+..+.+.++............ .......++.   
T Consensus       125 l~~l~~Wve~~~~df~~d~~ll~~l~~f~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~---  195 (481)
T d1nvus_         125 LNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKA-----MKKWVESITKIIQRKKIARDNGPGH-NITFQSSPPT---  195 (481)
T ss_dssp             HHHHHHHHHHCTHHHHHCHHHHHHHHHHHHHCCSTT-----THHHHHHHHHHHHHHHHC------C-CCCCSSCCCC---
T ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHhhhccCccc-cccccCCCCc---
Confidence            999999999999999999999999999999875432     2234555656554432211000000 0000000000   


Q ss_pred             cccCHHHHhhhhccccccccccCchhhhhhhhhhhcccccCCCccccccccccccccccccCCCCHHHHHHHHHHHHHHH
Q psy10812        199 ETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHI  278 (723)
Q Consensus       199 ~~lsa~eiaeq~t~ld~~~~~~i~~~e~l~~~w~~~~k~~~~p~i~~~tq~~~~~~~~~~l~~l~p~eIA~QLTlid~~l  278 (723)
                                    .+..                               ...+......+|++++|.|||+|||++|+++
T Consensus       196 --------------~~~~-------------------------------~~~~~~~~~~~l~~~~~~eiA~QLTl~~~~~  230 (481)
T d1nvus_         196 --------------VEWH-------------------------------ISRPGHIETFDLLTLHPIEIARQLTLLESDL  230 (481)
T ss_dssp             --------------CCCC-------------------------------SSCTTCTTTCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             --------------cccc-------------------------------cCCCCCCCCcccccCCHHHHHHHHHHHHHHH
Confidence                          0000                               0001122456789999999999999999999


Q ss_pred             HccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy10812        279 FKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTII  358 (723)
Q Consensus       279 F~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kfI~IA~~c~~L~NFnsl~AIi  358 (723)
                      |++|.+.||++++|++.++...+|||.+++++||.+++||+++||.++++++|+++|++||+||.+|+++|||||++||+
T Consensus       231 f~~I~~~E~l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~  310 (481)
T d1nvus_         231 YRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVV  310 (481)
T ss_dssp             HHTCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999998777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccccccchhchhhhcccCCcccCCCCc
Q psy10812        359 SAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGET  438 (723)
Q Consensus       359 sgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPflG~~L~DL~fi~egnp~~~~dg~~  438 (723)
                      +||++++|+||++||+.|+++.++.|++|+.++  ++||++||+.+.++.+|||||||+||+||+++++|||++.++++.
T Consensus       311 ~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~--~~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~~~  388 (481)
T d1nvus_         311 SAMNSSPVYRLDHTFEQIPSRQKKILEEAHELS--EDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGK  388 (481)
T ss_dssp             HHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEEEETTE
T ss_pred             HHHccCcchHHHHHHHhCCHHHHHHHHHHHHhc--chhHHHHHHHHhcCCCCeEeeeccHHHHHHHHHhcCCccccCCCC
Confidence            999999999999999999999999999999996  489999999999999999999999999999999999999864434


Q ss_pred             ccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHhhhhccCCCcccccchhhHhhhhhc
Q psy10812        439 NLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDT  518 (723)
Q Consensus       439 ~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~yi~~~  518 (723)
                      .+|||.|+++++++|.++++||+.+|.|.+++.|++||.+.....+..                         .      
T Consensus       389 ~lINf~K~~~i~~~i~~i~~~Q~~~y~~~~~~~i~~~l~~~~~~~~~~-------------------------~------  437 (481)
T d1nvus_         389 ELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSM-------------------------E------  437 (481)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHTCCTTTTCC-------------------------H------
T ss_pred             ceEcHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHhhhhhhhhh-------------------------h------
Confidence            499999999999999999999999999999999999998654332110                         0      


Q ss_pred             CccccchhHHhhccccccCCCCCC
Q psy10812        519 SWIIEDEDVLHQKSMEIEPRTTGR  542 (723)
Q Consensus       519 ~~~i~~ed~Ly~lSl~iEPR~~~~  542 (723)
                         ..+||+||++|+++|||..+.
T Consensus       438 ---~~~~d~l~~lS~~~EPr~~~~  458 (481)
T d1nvus_         438 ---KEFTDYLFNKSLEIEPRNPKP  458 (481)
T ss_dssp             ---HHHHHHHHHHHHHHSCCTTSC
T ss_pred             ---ccchHHHHHHHHHhCCCCCCC
Confidence               124788999999999997543
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure