Psyllid ID: psy10818

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
SSTSTAATAFDIAASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLPDRPAIHYQV
cccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccc
cccHHHHHHHHHHHccccccccccHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHcHcHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccc
sststaatafdiaasessnprdispveeVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEivctpnllpaEYKAATQLTQMLTKACTKHEtnlqdllapppqvankeniETLSALEIAEQMTYIDYHIfksirseeffGQAWLksekltkaphiVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKvsktvrpatLYQVQVDLtfsglpdrpaihyqv
sststaatafdiaasessnprdispveevrnkRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDllapppqvaNKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSktvrpatlyqvqvdltfsglpdrpaihyqv
SSTSTAATAFDIAASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLPDRPAIHYQV
****************************************ARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLL*********ENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGL**********
SSTSTAATAFDIAASESS*********EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEI************************************************ETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEK*TKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQV******L**RPAIHYQV
*********FDIAASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLPDRPAIHYQV
****TAATAFDIAASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLPDRPAI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSTSTAATAFDIAASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLPDRPAIHYQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
P288181244 Ras-specific guanine nucl yes N/A 0.795 0.175 0.486 1e-51
P276711262 Ras-specific guanine nucl yes N/A 0.897 0.194 0.434 8e-51
A2CEA71244 Ras-specific guanine nucl no N/A 0.832 0.183 0.443 5e-50
O148271237 Ras-specific guanine nucl no N/A 0.846 0.187 0.442 8e-50
Q139721275 Ras-specific guanine nucl no N/A 0.799 0.171 0.465 9e-50
Q99JE41190 Ras-specific guanine nucl yes N/A 0.846 0.194 0.438 1e-49
P703921189 Ras-specific guanine nucl no N/A 0.846 0.195 0.438 2e-49
Q8IS18 1037 Ras guanine nucleotide ex yes N/A 0.711 0.188 0.360 8e-28
Q552M51508 Ras guanine nucleotide ex no N/A 0.737 0.133 0.302 7e-23
P26675 1596 Protein son of sevenless yes N/A 0.777 0.133 0.282 9e-23
>sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus norvegicus GN=Rasgrf1 PE=1 SV=1 Back     alignment and function desciption
 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 150/220 (68%), Gaps = 2/220 (0%)

Query: 30   RNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEY 89
            RN  KE V+  A T +VLNVL+HW++KH+QDF  D  L+Y  + FLEE++  P+LLP E 
Sbjct: 909  RNIDKEFVIRRAATNRVLNVLRHWVTKHSQDFETDDLLKYKVICFLEEVMHDPDLLPQER 968

Query: 90   KAATQLTQMLTK-ACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKS 148
            KAA  + + LT+   T++ + L +LL     V   E  E  SA+EIAEQ+T +D+ +FKS
Sbjct: 969  KAAANIMRTLTQEEITENHSMLDELLLMTEGVKT-EPFENHSAMEIAEQLTLLDHLVFKS 1027

Query: 149  IRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAV 208
            I  EEFFGQ W+K++K  + P+I+  T+ FN +S L+A+EIL    +S R   IEKW+AV
Sbjct: 1028 IPYEEFFGQGWMKADKNERTPYIMKTTRHFNHISNLIASEILRNEEVSARASTIEKWVAV 1087

Query: 209  ANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
            A+I R L+N+N VL I S++N S++FRLKKTW KVSK  +
Sbjct: 1088 ADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTK 1127
Promotes the exchange of Ras-bound GDP by GTP.
Rattus norvegicus (taxid: 10116)
>sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus GN=Rasgrf1 PE=1 SV=2 Back     alignment and function description
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio GN=rasgrf2 PE=3 SV=1 Back     alignment and function description
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens GN=RASGRF2 PE=1 SV=2 Back     alignment and function description
>sp|Q13972|RGRF1_HUMAN Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=1 Back     alignment and function description
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus norvegicus GN=Rasgrf2 PE=1 SV=1 Back     alignment and function description
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus GN=Rasgrf2 PE=1 SV=2 Back     alignment and function description
>sp|Q8IS18|GEFE_DICDI Ras guanine nucleotide exchange factor E OS=Dictyostelium discoideum GN=gefE PE=2 SV=1 Back     alignment and function description
>sp|Q552M5|GEFY_DICDI Ras guanine nucleotide exchange factor Y OS=Dictyostelium discoideum GN=gefY PE=1 SV=2 Back     alignment and function description
>sp|P26675|SOS_DROME Protein son of sevenless OS=Drosophila melanogaster GN=Sos PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
322800377 396 hypothetical protein SINV_05842 [Solenop 0.839 0.580 0.629 6e-78
347965563 1618 AGAP001238-PB [Anopheles gambiae str. PE 0.886 0.150 0.563 3e-75
347965565 1505 AGAP001238-PA [Anopheles gambiae str. PE 0.886 0.161 0.563 5e-75
383858662 1675 PREDICTED: ras-specific guanine nucleoti 0.843 0.137 0.605 5e-75
380018321 1401 PREDICTED: LOW QUALITY PROTEIN: ras-spec 0.795 0.155 0.631 1e-73
328723328 1489 PREDICTED: ras-specific guanine nucleoti 0.890 0.163 0.572 1e-73
157128741 377 ras GTP exchange factor [Aedes aegypti] 0.883 0.641 0.569 1e-73
170043893 377 ras GTP exchange factor [Culex quinquefa 0.886 0.644 0.559 1e-73
345488865 1522 PREDICTED: ras-specific guanine nucleoti 0.843 0.151 0.586 2e-73
307177674 1156 Ras-specific guanine nucleotide-releasin 0.839 0.198 0.608 2e-73
>gi|322800377|gb|EFZ21381.1| hypothetical protein SINV_05842 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/240 (62%), Positives = 190/240 (79%), Gaps = 10/240 (4%)

Query: 17  SSNPRDISPVE------EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYM 70
           SSNP DI P          +N+RKESV+STA TM+VLNVL+HW+SKH QDF  D++L+ M
Sbjct: 17  SSNPPDIRPPNANDGRGRDKNRRKESVMSTAATMRVLNVLRHWVSKHAQDFEMDQKLKSM 76

Query: 71  TLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDL--LAPPPQVANKENIET 128
           T+EFLE+I  +PNLLPAE+KAATQL +++TK  T  ETN  DL  L  PP + +KE+IET
Sbjct: 77  TIEFLEDINYSPNLLPAEHKAATQLLRLITKEET--ETNKVDLKKLLTPPTIPSKESIET 134

Query: 129 LSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANE 188
           LSALEIAEQMTY+D+HIF SI SEEF GQAW+K++K T+AP+I+L T+RFN +S+LV +E
Sbjct: 135 LSALEIAEQMTYLDHHIFVSITSEEFLGQAWMKTDKATRAPNILLMTKRFNEVSQLVVSE 194

Query: 189 ILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
           I+ RSNM+ R+ VIEKW AVA+I R L+N+NGVL I +A  NSSV+RLKKTWDKVSKT R
Sbjct: 195 IIRRSNMTARIAVIEKWAAVADINRVLHNYNGVLQICAAFTNSSVYRLKKTWDKVSKTTR 254

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|347965563|ref|XP_003435786.1| AGAP001238-PB [Anopheles gambiae str. PEST] gi|333470454|gb|EGK97627.1| AGAP001238-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347965565|ref|XP_321917.5| AGAP001238-PA [Anopheles gambiae str. PEST] gi|333470453|gb|EAA01783.5| AGAP001238-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|383858662|ref|XP_003704818.1| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380018321|ref|XP_003693080.1| PREDICTED: LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|328723328|ref|XP_001952636.2| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157128741|ref|XP_001661500.1| ras GTP exchange factor [Aedes aegypti] gi|108872488|gb|EAT36713.1| AAEL011226-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170043893|ref|XP_001849602.1| ras GTP exchange factor [Culex quinquefasciatus] gi|167867177|gb|EDS30560.1| ras GTP exchange factor [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|345488865|ref|XP_001602057.2| PREDICTED: ras-specific guanine nucleotide-releasing factor 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307177674|gb|EFN66720.1| Ras-specific guanine nucleotide-releasing factor 2 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
UNIPROTKB|F1P3U71198 F1P3U7 "Uncharacterized protei 0.799 0.182 0.477 2.1e-49
UNIPROTKB|F1LM431243 Rasgrf1 "Ras-specific guanine 0.795 0.175 0.486 1.5e-48
RGD|6203951244 Rasgrf1 "RAS protein-specific 0.795 0.175 0.486 1.5e-48
UNIPROTKB|F1LS731252 Rasgrf1 "Ras-specific guanine 0.795 0.174 0.486 1.6e-48
UNIPROTKB|F1ND091146 RASGRF2 "Uncharacterized prote 0.868 0.207 0.447 2.1e-48
UNIPROTKB|D6RAS91151 RASGRF2 "Ras-specific guanine 0.923 0.219 0.430 9.2e-48
UNIPROTKB|O148271237 RASGRF2 "Ras-specific guanine 0.923 0.204 0.430 1.1e-47
MGI|MGI:996941262 Rasgrf1 "RAS protein-specific 0.897 0.194 0.45 1.1e-47
UNIPROTKB|F1RF081144 RASGRF2 "Uncharacterized prote 0.923 0.221 0.426 1.2e-47
UNIPROTKB|E2RTG61170 RASGRF2 "Uncharacterized prote 0.923 0.216 0.426 2.6e-47
UNIPROTKB|F1P3U7 F1P3U7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 516 (186.7 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
 Identities = 106/222 (47%), Positives = 151/222 (68%)

Query:    25 PVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNL 84
             P ++ RN  KE V+  A T +VLNVL+HW+SKH+QDF  ++EL++  + FLEE++  P L
Sbjct:   856 PTDQ-RNGDKEFVIRRAATNRVLNVLRHWVSKHSQDFETNEELKFRVISFLEEVIHDPEL 914

Query:    85 LPAEYKAATQLTQMLTKACT-KHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDY 143
             L  E KAA  + + LT+     ++T L++++     V   E  E  SALEIAEQ+T +D+
Sbjct:   915 LTQERKAAANIIRTLTQEDPGDNQTTLEEVVQMAEGV-KAEPFENHSALEIAEQLTLLDH 973

Query:   144 HIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIE 203
              +FK I  EEFFGQ W+K EK  + P+I+  T+ FN +S L+A+EIL    ++ RV  IE
Sbjct:   974 LVFKKIPYEEFFGQGWMKLEKNERTPYIMKNTKHFNDVSNLIASEILRNEELTARVSAIE 1033

Query:   204 KWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSK 245
             KW+AVA+I R L+N+N VL I S++N S++FRLKKTW KVSK
Sbjct:  1034 KWVAVADICRCLHNYNAVLEITSSLNRSAIFRLKKTWLKVSK 1075
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0007264 "small GTPase mediated signal transduction" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
UNIPROTKB|F1LM43 Rasgrf1 "Ras-specific guanine nucleotide-releasing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|620395 Rasgrf1 "RAS protein-specific guanine nucleotide-releasing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LS73 Rasgrf1 "Ras-specific guanine nucleotide-releasing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1ND09 RASGRF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D6RAS9 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O14827 RASGRF2 "Ras-specific guanine nucleotide-releasing factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:99694 Rasgrf1 "RAS protein-specific guanine nucleotide-releasing factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF08 RASGRF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTG6 RASGRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
pfam00617185 pfam00617, RasGEF, RasGEF domain 7e-46
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 2e-35
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 2e-34
cd06224122 cd06224, REM, Guanine nucleotide exchange factor f 1e-05
smart00229127 smart00229, RasGEFN, Guanine nucleotide exchange f 4e-04
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information 
 Score =  151 bits (385), Expect = 7e-46
 Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 1/117 (0%)

Query: 129 LSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANE 188
           L  LE+A Q+T I+  +F +I   E    AW K +    +P+I  F  RFN +S+ VA E
Sbjct: 3   LDPLELARQLTLIESELFSAIDPRELLDSAWGKKDS-KLSPNIEAFISRFNQLSRWVATE 61

Query: 189 ILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSK 245
           IL+  ++ +R  VI+K+I +A   R LNNFN ++ IIS +N+S + RLKKTW+ VSK
Sbjct: 62  ILSEEDLKKRAKVIKKFIKIAQHCRELNNFNSLMAIISGLNSSPISRLKKTWELVSK 118

Guanine nucleotide exchange factor for Ras-like small GTPases. Length = 185
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|100121 cd06224, REM, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>gnl|CDD|214571 smart00229, RasGEFN, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 100.0
KOG3629|consensus 728 99.95
KOG3542|consensus 1283 99.95
KOG3541|consensus 477 99.92
KOG2378|consensus573 99.91
KOG3417|consensus 840 99.72
KOG3417|consensus840 98.44
smart00229127 RasGEFN Guanine nucleotide exchange factor for Ras 98.35
cd06224122 REM Guanine nucleotide exchange factor for Ras-lik 98.14
PF00618104 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR00 98.0
KOG3542|consensus 1283 80.68
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
Probab=100.00  E-value=1.7e-37  Score=275.37  Aligned_cols=148  Identities=33%  Similarity=0.600  Sum_probs=141.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCc-cHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy10818        126 IETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAP-HIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEK  204 (274)
Q Consensus       126 l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p-~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~  204 (274)
                      ++++||.|||+|||++|+++|++|++.||+...|.+.+....+| +|.+++++||.++.||+.+||.++++++|++++++
T Consensus         1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~   80 (242)
T smart00147        1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK   80 (242)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999877666778 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC-------CCCCccc
Q psy10818        205 WIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD-------RPAIHYQ  273 (274)
Q Consensus       205 fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~-------~pciPf~  273 (274)
                      ||+||.+|.++||||+++||++||++++|.||++||+.|++++++.++ +  ++++++||++||+       .|||||+
T Consensus        81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~l  159 (242)
T smart00147       81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFL  159 (242)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccch
Confidence            999999999999999999999999999999999999999999999998 5  9999999999997       7999996

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>KOG2378|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved [] Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 3e-33
2ii0_A 490 Crystal Structure Of Catalytic Domain Of Son Of Sev 5e-21
1xd2_C 484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 5e-21
1nvu_S 481 Structural Evidence For Feedback Activation By Rasg 5e-21
1bkd_S 477 Complex Of Human H-Ras With Human Sos-1 Length = 47 5e-21
3ksy_A 1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 7e-21
1xd4_A 852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 8e-21
1xdv_A 847 Experimentally Phased Structure Of Human The Son Of 9e-21
3qxl_A271 Crystal Structure Of The Cdc25 Domain From Ral-Spec 8e-18
4f7z_A999 Conformational Dynamics Of Exchange Protein Directl 2e-10
2byv_E999 Structure Of The Camp Responsive Exchange Factor Ep 3e-10
3cf6_E694 Structure Of Epac2 In Complex With Cyclic-Amp And R 3e-10
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 89/119 (74%)
Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
           SALEIAEQ+T +D+ +FKSI  EEFFGQ W+K+EK  + P+I+  T+ FN +S  +A+EI
Sbjct: 5   SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64
Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
           +   ++S R   IEKW+AVA+I R L+N+N VL I S++N S++FRLKKTW KVSK  +
Sbjct: 65  IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTK 123
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 Back     alignment and structure
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 Back     alignment and structure
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 Back     alignment and structure
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 2e-58
2ii0_A 490 SOS-1, SON of sevenless homolog 1; signaling prote 4e-57
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 8e-53
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 4e-52
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 2e-46
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 7e-46
3t6a_A 333 Breast cancer anti-estrogen resistance protein 3; 1e-26
3t6g_A 331 SH2 domain-containing protein 3C; CDC25-homology d 5e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
 Score =  199 bits (507), Expect = 2e-58
 Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 14  ASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLE 73
           A   +      P+     + ++  +   + ++VLNV +HW+  H  DF +D  L     E
Sbjct: 658 ADRIAIENGDQPLSAELKRFRKEYIQPVQ-LRVLNVCRHWVEHHFYDFERDAYLLQRMEE 716

Query: 74  FLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPP-------PQVANKENI 126
           F+  +         E        + + +              P        P      ++
Sbjct: 717 FIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDL 776

Query: 127 ETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVA 186
            TL  +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++    
Sbjct: 777 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFE 836

Query: 187 NEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKT 246
             I+   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++   
Sbjct: 837 KCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSR 896

Query: 247 VR 248
            +
Sbjct: 897 QK 898
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
2ii0_A 490 SOS-1, SON of sevenless homolog 1; signaling prote 100.0
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 100.0
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 100.0
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 100.0
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 100.0
3t6a_A 333 Breast cancer anti-estrogen resistance protein 3; 99.83
3t6g_A 331 SH2 domain-containing protein 3C; CDC25-homology d 99.83
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
Probab=100.00  E-value=1e-47  Score=371.14  Aligned_cols=238  Identities=26%  Similarity=0.472  Sum_probs=193.7

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhhcc-
Q psy10818         28 EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKH-  106 (274)
Q Consensus        28 ~~~~~~k~~~i~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~-  106 (274)
                      +..+.+|+.  ..++|+||++||+.||++||+||..|+.+...+..|++.+...     .+.+.+.++.+.+.++.... 
T Consensus       114 ~~~~~~~~~--~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~  186 (490)
T 2ii0_A          114 ELKRFRKEY--IQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGK-----AMKKWVESITKIIQRKKIARD  186 (490)
T ss_dssp             HHHHHHHHT--HHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTCCCT-----TTHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhh--hhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHhccc
Confidence            344455553  3689999999999999999999998888888999999875432     13455666666665443211 


Q ss_pred             ---ccccccccCCCCCCC---------CccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHH
Q psy10818        107 ---ETNLQDLLAPPPQVA---------NKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLF  174 (274)
Q Consensus       107 ---~~~~~~~~~~pp~~~---------~~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~  174 (274)
                         ...+. ...+||.+.         ...++++++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.++
T Consensus       187 ~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~  265 (490)
T 2ii0_A          187 NGPGHNIT-FQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKM  265 (490)
T ss_dssp             ---------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHH
T ss_pred             CCCCcccc-cCCCCCccccccCCCCCcccchhhccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHH
Confidence               11111 111233221         23568899999999999999999999999999999999987655678999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H
Q psy10818        175 TQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y  253 (274)
Q Consensus       175 i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l  253 (274)
                      +.+||.+++||+++||.++++++||++|++||+||.+|+++|||||+|||++||++++|+||++||+.|+++.++.++ +
T Consensus       266 i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l  345 (490)
T 2ii0_A          266 IRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEA  345 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999888 4


Q ss_pred             hhCcCCcccccCC------CCCCccc
Q psy10818        254 QVQVDLTFSGLPD------RPAIHYQ  273 (274)
Q Consensus       254 l~s~~~nfk~yR~------~pciPf~  273 (274)
                      .--+++||++||+      .|||||+
T Consensus       346 ~~l~~~n~~~yR~~l~~~~~p~IPfl  371 (490)
T 2ii0_A          346 HELSEDHYKKYLAKLRSINPPCVPFF  371 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSSCBCCC
T ss_pred             HHhchHHHHHHHHHHhccCCCcccCc
Confidence            1114689999996      7999996
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1nvus_ 481 a.117.1.1 (S:) Son of sevenless protein homolog 1 2e-40
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-40
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 8/239 (3%)

Query: 14  ASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLE 73
           A   +      P+     + ++  +   + ++VLNV +HW+  H  DF +D  L     E
Sbjct: 93  ADRIAIENGDQPLSAELKRFRKEYIQPVQ-LRVLNVCRHWVEHHFYDFERDAYLLQRMEE 151

Query: 74  FLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPP-------PQVANKENI 126
           F+  +         E        + + +              P        P      ++
Sbjct: 152 FIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDL 211

Query: 127 ETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVA 186
            TL  +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++    
Sbjct: 212 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFE 271

Query: 187 NEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSK 245
             I+   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++  
Sbjct: 272 KCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPS 330

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1nvus_ 481 Son of sevenless protein homolog 1 (sos-1) {Human 100.0
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=346.91  Aligned_cols=227  Identities=24%  Similarity=0.453  Sum_probs=189.9

Q ss_pred             hhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhhccc----ccccccc
Q psy10818         39 STARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHE----TNLQDLL  114 (274)
Q Consensus        39 ~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~  114 (274)
                      .++++.||+++|+.|+++||+||..++.+...+..|+..+....     ..+....+.+.+.+......    .......
T Consensus       117 ~~~i~~rVl~~l~~Wve~~~~df~~d~~ll~~l~~f~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  191 (481)
T d1nvus_         117 IQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKA-----MKKWVESITKIIQRKKIARDNGPGHNITFQS  191 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHHHCCSTT-----THHHHHHHHHHHHHHHHC------CCCCCSS
T ss_pred             hhhHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHhhhccCccccccccC
Confidence            47899999999999999999999988888889999999876432     12344455555544332210    0011111


Q ss_pred             CCCCC---------CCCccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHH
Q psy10818        115 APPPQ---------VANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLV  185 (274)
Q Consensus       115 ~~pp~---------~~~~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV  185 (274)
                       .||.         .....+|.+++|.|||+|||++|+++|++|+|.||+++.|++.++...+|||.+++++||.+++||
T Consensus       192 -~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QLTl~~~~~f~~I~~~E~l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv  270 (481)
T d1nvus_         192 -SPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWF  270 (481)
T ss_dssp             -CCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHTCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCccccccCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcccCCCCCCCcHHHHHHHHhHHHHHH
Confidence             1111         123457899999999999999999999999999999999998776667999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCccc
Q psy10818        186 ANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFS  262 (274)
Q Consensus       186 ~~~Il~~~~~~~Ra~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk  262 (274)
                      +++||.++++++|+++|++||+||.+|+++||||+++||++||++++|+||++||+.|+.++++.|+ +  ++  ++||+
T Consensus       271 ~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~--~~n~~  348 (481)
T d1nvus_         271 EKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELS--EDHYK  348 (481)
T ss_dssp             HHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHhc--chhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 5  54  48999


Q ss_pred             ccCC------CCCCccc
Q psy10818        263 GLPD------RPAIHYQ  273 (274)
Q Consensus       263 ~yR~------~pciPf~  273 (274)
                      +||+      .|||||+
T Consensus       349 ~yr~~l~~~~~p~IP~l  365 (481)
T d1nvus_         349 KYLAKLRSINPPCVPFF  365 (481)
T ss_dssp             HHHHHHHHSCSCCBCCS
T ss_pred             HHHHHHhcCCCCeEeee
Confidence            9997      7999995