Psyllid ID: psy10828

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----

MSDLVKYSRVGKFSADAERNTSKTVTLGGTRTGPDEPPAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR

ccccccccccccccccccHHHHccccccEEccccccccccccEEEEEEcccccccEEEEEEccEEEEEEcccEEEEEcccccccccccccHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHccccccccccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHcc

ccccEEEcEccEEEcccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEHcccHccccccccHHHHHHHHHHHHHHHHHHHHHHcHHEEHHHHHHHHHHccccccccccccHHHHccccHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHc

msdlvkysrvgkfsadaerntsktvtlggtrtgpdeppagpgavskargpqfglIELEIFSAAGEIFQKKKAIIssvspqkrgapksagpvaVCHSALWWakeisfpqaglvcklntrcsiiaacnpkghydpnipisvNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFgkrlgpssnqatslwDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR

msdlvkysrvgkfsadaerntsktvtlggtrtgpdeppagpgAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVspqkrgapksaGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR

MSDLVKYSRVGKFSADAERNTSKTVTLGGTRTGPDEPPAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPllsrfdlvlvlldsKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR

**************************************************QFGLIELEIFSAAGEIFQKKKAII***************PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQ*********************

****VKYSRVGKF*ADAERNTSKTVTLGGTRTGPDEPPAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF*****************EKLQAYFYLIKGLRPQMTLEANRILTRYY***************VRLLESLIR

MSDLVKYSRVGKFSADAERNTSKTVTLGGTRTGP************ARGPQFGLIELEIFSAAGEIFQKKKAIISS***************AVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR

*SDLVKYSRVGKFSAD****TSKTVTL*GTRT*****************PQFGLIELEIFSAAGEIFQKKKAIISS********PKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		245	2.2.26 [Sep-21-2011]
F1QDI9		1133	DNA helicase MCM9 OS=Dani	yes	N/A	0.6	0.129	0.602	1e-46
Q6NRM6		1143	DNA helicase MCM9 OS=Xeno	N/A	N/A	0.6	0.128	0.602	2e-46
I0IUP4		1169	DNA helicase MCM9 OS=Gall	yes	N/A	0.6	0.125	0.602	2e-46
F6RIX4		1117	DNA helicase MCM9 OS=Xeno	yes	N/A	0.6	0.131	0.602	3e-46
F1N2W9		1139	DNA helicase MCM9 OS=Bos	no	N/A	0.6	0.129	0.582	4e-45
Q2KHI9		1134	DNA helicase MCM9 OS=Mus	yes	N/A	0.6	0.129	0.576	2e-44
Q9NXL9		1143	DNA helicase MCM9 OS=Homo	yes	N/A	0.6	0.128	0.576	3e-44
F1M5F3		1124	DNA helicase MCM9 OS=Ratt	yes	N/A	0.6	0.130	0.569	3e-44
P34647		810	DNA replication licensing	yes	N/A	0.612	0.185	0.352	6e-20
Q61J08		810	DNA replication licensing	N/A	N/A	0.612	0.185	0.346	2e-19

>sp\|F1QDI9\|MCM9_DANRE DNA helicase MCM9 OS=Danio rerio GN=mcm9 PE=2 SV=2	Back alignment and function desciption

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 121/151 (80%), Gaps = 4/151 (2%)

Query: 95  HSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLV 154
           H A+   + IS  +AG+VCKL+TR +I+AA NPKG YDPN+ +SVN+A+ASPLLSRFDLV
Sbjct: 432 HEAME-QQTISVAKAGMVCKLDTRTTILAATNPKGQYDPNVSVSVNVALASPLLSRFDLV 490

Query: 155 LVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEAN 214
           LVLLD+K+  WDK++S++IL  K   PS  ++  LW +EK++AYF LIK L+P++T EAN
Sbjct: 491 LVLLDTKNPDWDKIISSFILQNKG-APS--ESLCLWSMEKMRAYFCLIKTLKPRITPEAN 547

Query: 215 RILTRYYQAQRKADMRNAARTTVRLLESLIR 245
            IL+RYYQ QR++D RNAARTT+R+LESL R
Sbjct: 548 TILSRYYQLQRQSDSRNAARTTIRMLESLSR 578

Component of the MCM8-MCM9 complex, a complex involved in homologous recombination repair following DNA interstrand cross-links and plays a key role during gametogenesis. The MCM8-MCM9 complex probably acts as a hexameric helicase required to process aberrant forks into homologous recombination substrates and to orchestrate homologous recombination with resection, fork stabilization and fork restart.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q6NRM6\|MCM9_XENLA DNA helicase MCM9 OS=Xenopus laevis GN=mcm9 PE=1 SV=1	Back alignment and function description

>sp\|I0IUP4\|MCM9_CHICK DNA helicase MCM9 OS=Gallus gallus GN=MCM9 PE=1 SV=2	Back alignment and function description

>sp\|F6RIX4\|MCM9_XENTR DNA helicase MCM9 OS=Xenopus tropicalis GN=mcm9 PE=3 SV=1	Back alignment and function description

>sp\|F1N2W9\|MCM9_BOVIN DNA helicase MCM9 OS=Bos taurus GN=MCM9 PE=3 SV=2	Back alignment and function description

>sp\|Q2KHI9\|MCM9_MOUSE DNA helicase MCM9 OS=Mus musculus GN=Mcm9 PE=1 SV=2	Back alignment and function description

>sp\|Q9NXL9\|MCM9_HUMAN DNA helicase MCM9 OS=Homo sapiens GN=MCM9 PE=1 SV=4	Back alignment and function description

>sp\|F1M5F3\|MCM9_RAT DNA helicase MCM9 OS=Rattus norvegicus GN=Mcm9 PE=3 SV=2	Back alignment and function description

>sp\|P34647\|MCM6_CAEEL DNA replication licensing factor mcm-6 OS=Caenorhabditis elegans GN=mcm-6 PE=1 SV=1	Back alignment and function description

>sp\|Q61J08\|MCM6_CAEBR DNA replication licensing factor mcm-6 OS=Caenorhabditis briggsae GN=mcm-6 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		245
390346753		1239	PREDICTED: DNA replication licensing fac	0.612	0.121	0.615	7e-48
260817718		678	hypothetical protein BRAFLDRAFT_283576 [	0.624	0.225	0.606	7e-46
449497889		1155	PREDICTED: DNA helicase MCM9 [Taeniopygi	0.6	0.127	0.596	4e-45
326915995		1117	PREDICTED: DNA replication licensing fac	0.6	0.131	0.602	5e-45
408407690		1133	RecName: Full=DNA helicase MCM9; AltName	0.6	0.129	0.602	6e-45
432945589		1116	PREDICTED: DNA helicase MCM9-like [Oryzi	0.6	0.131	0.589	7e-45
383212246		1169	minichromosome maintenance complex compo	0.6	0.125	0.602	7e-45
363732300		1178	PREDICTED: LOW QUALITY PROTEIN: DNA repl	0.6	0.124	0.602	9e-45
147902053		1143	DNA helicase MCM9 [Xenopus laevis] gi\|82	0.6	0.128	0.602	9e-45
408407689		1169	RecName: Full=DNA helicase MCM9; AltName	0.6	0.125	0.602	1e-44

>gi\|390346753\|ref\|XP_785765.3\| PREDICTED: DNA replication licensing factor MCM9 [Strongylocentrotus purpuratus]	Back alignment and taxonomy information

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 119/151 (78%), Gaps = 1/151 (0%)

Query: 95  HSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLV 154
           H A+   + IS  +AGLVCKLNTR +I+AA NPKG YDP   ISVNIA+ASPLLSRFD+V
Sbjct: 464 HEAMEQ-QTISVAKAGLVCKLNTRTTILAATNPKGKYDPGESISVNIALASPLLSRFDIV 522

Query: 155 LVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEAN 214
           LVLLDS++E WD++VS++IL GK   P    A+ LW +EK+Q Y  +IK + P +T +AN
Sbjct: 523 LVLLDSQNEDWDRVVSSFILEGKAPAPEGAPASDLWSIEKMQTYLSIIKTIDPVLTPQAN 582

Query: 215 RILTRYYQAQRKADMRNAARTTVRLLESLIR 245
            +L+RYYQAQR+ADMRNAARTT+RLLES++R
Sbjct: 583 IVLSRYYQAQRQADMRNAARTTIRLLESMVR 613

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi\|260817718\|ref\|XP_002603732.1\| hypothetical protein BRAFLDRAFT_283576 [Branchiostoma floridae] gi\|229289055\|gb\|EEN59743.1\| hypothetical protein BRAFLDRAFT_283576 [Branchiostoma floridae]	Back alignment and taxonomy information

>gi\|449497889\|ref\|XP_002190011.2\| PREDICTED: DNA helicase MCM9 [Taeniopygia guttata]	Back alignment and taxonomy information

>gi\|326915995\|ref\|XP_003204297.1\| PREDICTED: DNA replication licensing factor MCM9-like [Meleagris gallopavo]	Back alignment and taxonomy information

>gi\|408407690\|sp\|F1QDI9.2\|MCM9_DANRE RecName: Full=DNA helicase MCM9; AltName: Full=Minichromosome maintenance 9	Back alignment and taxonomy information

>gi\|432945589\|ref\|XP_004083673.1\| PREDICTED: DNA helicase MCM9-like [Oryzias latipes]	Back alignment and taxonomy information

>gi\|383212246\|dbj\|BAM08993.1\| minichromosome maintenance complex component 8 [Gallus gallus]	Back alignment and taxonomy information

>gi\|363732300\|ref\|XP_003641080.1\| PREDICTED: LOW QUALITY PROTEIN: DNA replication licensing factor MCM9-like [Gallus gallus]	Back alignment and taxonomy information

>gi\|147902053\|ref\|NP_001084773.1\| DNA helicase MCM9 [Xenopus laevis] gi\|82237126\|sp\|Q6NRM6.1\|MCM9_XENLA RecName: Full=DNA helicase MCM9; AltName: Full=Minichromosome maintenance 9 gi\|47125190\|gb\|AAH70720.1\| Mcm9 protein [Xenopus laevis] gi\|86198290\|tpe\|CAJ70647.1\| TPA: mini-chromosome maintenance deficient 9 [Xenopus laevis]	Back alignment and taxonomy information

>gi\|408407689\|sp\|I0IUP4.2\|MCM9_CHICK RecName: Full=DNA helicase MCM9; AltName: Full=Minichromosome maintenance 9	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		245
ZFIN\|ZDB-GENE-041014-310		1135	mcm9 "minichromosome maintenan	0.6	0.129	0.516	2.2e-34
UNIPROTKB\|I0IUP4		1169	MCM9 "DNA helicase MCM9" [Gall	0.6	0.125	0.516	6.1e-34
UNIPROTKB\|Q6NRM6		1143	mcm9 "DNA helicase MCM9" [Xeno	0.6	0.128	0.516	2.6e-33
UNIPROTKB\|F6RIX4		1117	mcm9 "DNA helicase MCM9" [Xeno	0.6	0.131	0.516	3.1e-33
UNIPROTKB\|F1N2W9		1139	MCM9 "DNA helicase MCM9" [Bos	0.6	0.129	0.503	5.3e-33
UNIPROTKB\|H7BXD9		689	MCM9 "DNA helicase MCM9" [Homo	0.6	0.213	0.496	9e-33
RGD\|1560557		1250	RGD1560557 "similar to minichr	0.6	0.117	0.490	9.1e-33
UNIPROTKB\|F1PUE1		945	MCM9 "Uncharacterized protein"	0.6	0.155	0.496	1.6e-32
UNIPROTKB\|J9PA91		1141	MCM9 "Uncharacterized protein"	0.6	0.128	0.496	2.3e-32
UNIPROTKB\|F1SF38		1126	MCM9 "Uncharacterized protein"	0.6	0.130	0.496	2.9e-32

ZFIN\|ZDB-GENE-041014-310 mcm9 "minichromosome maintenance complex component 9" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 385 (140.6 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 78/151 (51%), Positives = 107/151 (70%)

Query:    95 HSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPXXXXXXXX 154
             H A+   + IS  +AG+VCKL+TR +I+AA NPKG YDPN+ +SVN+A+ASP        
Sbjct:   434 HEAME-QQTISVAKAGMVCKLDTRTTILAATNPKGQYDPNVSVSVNVALASPLLSRFDLV 492

Query:   155 XXXXXXKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEAN 214
                   K+  WDK++S++IL  K   PS  ++  LW +EK++AYF LIK L+P++T EAN
Sbjct:   493 LVLLDTKNPDWDKIISSFILQNKG-APS--ESLCLWSMEKMRAYFCLIKTLKPRITPEAN 549

Query:   215 RILTRYYQAQRKADMRNAARTTVRLLESLIR 245
              IL+RYYQ QR++D RNAARTT+R+LESL R
Sbjct:   550 TILSRYYQLQRQSDSRNAARTTIRMLESLSR 580

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0097362 "MCM8-MCM9 complex" evidence=ISS

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB\|I0IUP4 MCM9 "DNA helicase MCM9" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6NRM6 mcm9 "DNA helicase MCM9" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|F6RIX4 mcm9 "DNA helicase MCM9" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N2W9 MCM9 "DNA helicase MCM9" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|H7BXD9 MCM9 "DNA helicase MCM9" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1560557 RGD1560557 "similar to minichromosome maintenance protein 8 isoform 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PUE1 MCM9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PA91 MCM9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SF38 MCM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
I0IUP4	MCM9_CHICK	3, ., 6, ., 4, ., 1, 2	0.6026	0.6	0.1257	yes	N/A
Q9NXL9	MCM9_HUMAN	No assigned EC number	0.5761	0.6	0.1286	yes	N/A
F1M5F3	MCM9_RAT	3, ., 6, ., 4, ., 1, 2	0.5695	0.6	0.1307	yes	N/A
F1QDI9	MCM9_DANRE	3, ., 6, ., 4, ., 1, 2	0.6026	0.6	0.1297	yes	N/A
F6RIX4	MCM9_XENTR	3, ., 6, ., 4, ., 1, 2	0.6026	0.6	0.1316	yes	N/A
Q2KHI9	MCM9_MOUSE	No assigned EC number	0.5761	0.6	0.1296	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		245
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	9e-38
COG1241		682	COG1241, MCM2, Predicted ATPase involved in replic	3e-30
smart00350		509	smart00350, MCM, minichromosome maintenance protei	3e-27
PTZ00111		915	PTZ00111, PTZ00111, DNA replication licensing fact	2e-10

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

 Score =  134 bits (339), Expect = 9e-38
 Identities = 58/147 (39%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 104 ISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKS 162
           IS  +AG+V  LN RCS++AA NP  G YDP   ++ NI +  PLLSRFDL+ VLLD   
Sbjct: 150 ISIAKAGIVATLNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPD 209

Query: 163 EQWDKMVSNYILFGKRLGPSSNQATS-LWDVEKLQAYFYLIKG-LRPQMTLEANRILTRY 220
           E+ D+ ++ +I+   R        T    D E L+ Y    +  ++P+++ EA   L  +
Sbjct: 210 EERDEELAKHIVDLHRASDEEEIETEDEIDPELLRKYIAYARENIKPKLSDEAREKLVNW 269

Query: 221 YQAQRKADM--RNAARTTVRLLESLIR 245
           Y   RK     R +   TVR LESLIR
Sbjct: 270 YVELRKESEGSRGSIPITVRQLESLIR 296

Length = 327

>gnl\|CDD\|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		245
KOG0480\|consensus		764		100.0
COG1241		682	MCM2 Predicted ATPase involved in replication cont	100.0
KOG0481\|consensus		729		100.0
KOG0479\|consensus		818		100.0
PF00493		331	MCM: MCM2/3/5 family This family extends the MCM d	100.0
KOG0482\|consensus		721		100.0
KOG0478\|consensus		804		100.0
KOG0477\|consensus		854		100.0
PTZ00111		915	DNA replication licensing factor MCM4; Provisional	100.0
smart00350		509	MCM minichromosome maintenance proteins.	100.0
PF01078		206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.59
PRK09862		506	putative ATP-dependent protease; Provisional	99.54
TIGR00368		499	Mg chelatase-related protein. The N-terminal end m	99.52
COG0606		490	Predicted ATPase with chaperone activity [Posttran	99.45
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	99.3
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.21
PRK13406		584	bchD magnesium chelatase subunit D; Provisional	98.89
TIGR02030		337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.88
PRK13407		334	bchI magnesium chelatase subunit I; Provisional	98.8
CHL00081		350	chlI Mg-protoporyphyrin IX chelatase	98.68
TIGR00764		608	lon_rel lon-related putative ATP-dependent proteas	98.64
COG1239		423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.57
PRK13765		637	ATP-dependent protease Lon; Provisional	97.89
PF07726		131	AAA_3: ATPase family associated with various cellu	97.56
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	96.84
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.68
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.52
COG0714		329	MoxR-like ATPases [General function prediction onl	96.29
PRK13531		498	regulatory ATPase RavA; Provisional	95.98
TIGR02902		531	spore_lonB ATP-dependent protease LonB. Members of	95.98
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	95.64
smart00763		361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.09
COG1067		647	LonB Predicted ATP-dependent protease [Posttransla	93.77
PHA02244		383	ATPase-like protein	92.94
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	92.72
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	92.66
CHL00181		287	cbbX CbbX; Provisional	92.24
PRK11608		326	pspF phage shock protein operon transcriptional ac	91.8
PRK11361		457	acetoacetate metabolism regulatory protein AtoC; P	91.02
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	90.97
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	90.92
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	90.36
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	89.88
PRK15424		538	propionate catabolism operon regulatory protein Pr	89.63
PRK10365		441	transcriptional regulatory protein ZraR; Provision	88.47
TIGR02915		445	PEP_resp_reg putative PEP-CTERM system response re	88.32
COG2204		464	AtoC Response regulator containing CheY-like recei	87.69
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	86.46
PRK15115		444	response regulator GlrR; Provisional	86.02
PRK05022		509	anaerobic nitric oxide reductase transcription reg	85.3
TIGR01817		534	nifA Nif-specific regulatory protein. This model r	85.24
PRK05342		412	clpX ATP-dependent protease ATP-binding subunit Cl	84.67
TIGR01818		463	ntrC nitrogen regulation protein NR(I). This model	84.66
PRK11388		638	DNA-binding transcriptional regulator DhaR; Provis	83.07
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	82.79
PRK10923		469	glnG nitrogen regulation protein NR(I); Provisiona	82.05
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	80.56

>KOG0480\|consensus	Back alignment and domain information

Probab=100.00  E-value=4.3e-59  Score=455.43  Aligned_cols=219  Identities=30%  Similarity=0.461  Sum_probs=198.2

Q ss_pred             cceeeEEEeCCccCCCCC--------CCCCC----------CcccccccCcccceEEEEecccchhhcccCceeccCCCC
Q psy10828         19 RNTSKTVTLGGTRTGPDE--------PPAGP----------GAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQ   80 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~--------~~~~~----------~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~   80 (245)
                      |--+|+.+||-|-|++.|        .|-++          ||+|++++ |-.+|++.|  |||||||||+||||+++|+
T Consensus       376 RGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvk-D~esgdf~i--EAGALmLADnGICCIDEFD  452 (764)
T KOG0480|consen  376 RGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVK-DEESGDFTI--EAGALMLADNGICCIDEFD  452 (764)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEe-cCCCCceee--ecCcEEEccCceEEechhc
Confidence            677999999999999988        45544          99998887 446778999  9999999999999999999


Q ss_pred             cCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEecC
Q psy10828         81 KRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLD  159 (245)
Q Consensus        81 k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D  159 (245)
                      ||.    ..++.+||||| |||||||||||++|+||||+||||||||. ||||..+++.+|+++++||||||||+|++.|
T Consensus       453 KMd----~~dqvAihEAM-EQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD  527 (764)
T KOG0480|consen  453 KMD----VKDQVAIHEAM-EQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLD  527 (764)
T ss_pred             ccC----hHhHHHHHHHH-HhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEec
Confidence            872    13799999999 99999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHhhcCC----CCccc
Q psy10828        160 SKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMR----NAART  235 (245)
Q Consensus       160 ~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~~~P~LS~EA~~~I~~yY~~lR~~~~~----~~~~i  235 (245)
                      +.++..|..||.||+..|+.-++......+|+.+.+|+||.|||+++|.||.||.+.|.++|+.+|+.+..    ++.+|
T Consensus       528 ~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~I  607 (764)
T KOG0480|consen  528 DCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRI  607 (764)
T ss_pred             CCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccc
Confidence            99999999999999999975433222335899999999999999999999999999999999999998742    35699


Q ss_pred             chhhhhhhcC
Q psy10828        236 TVRLLESLIR  245 (245)
Q Consensus       236 TvRqLESLIR  245 (245)
                      |+||||||||
T Consensus       608 TvRqLESlIR  617 (764)
T KOG0480|consen  608 TVRQLESLIR  617 (764)
T ss_pred             cHHHHHHHHH
Confidence            9999999998

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0481\|consensus	Back alignment and domain information

>KOG0479\|consensus	Back alignment and domain information

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite	Back alignment and domain information

>KOG0482\|consensus	Back alignment and domain information

>KOG0478\|consensus	Back alignment and domain information

>KOG0477\|consensus	Back alignment and domain information

>PTZ00111 DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

>smart00350 MCM minichromosome maintenance proteins	Back alignment and domain information

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX	Back alignment and domain information

>PRK09862 putative ATP-dependent protease; Provisional	Back alignment and domain information

>TIGR00368 Mg chelatase-related protein	Back alignment and domain information

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>PRK13406 bchD magnesium chelatase subunit D; Provisional	Back alignment and domain information

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I	Back alignment and domain information

>PRK13407 bchI magnesium chelatase subunit I; Provisional	Back alignment and domain information

>CHL00081 chlI Mg-protoporyphyrin IX chelatase	Back alignment and domain information

>TIGR00764 lon_rel lon-related putative ATP-dependent protease	Back alignment and domain information

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]	Back alignment and domain information

>PRK13765 ATP-dependent protease Lon; Provisional	Back alignment and domain information

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>PRK13531 regulatory ATPase RavA; Provisional	Back alignment and domain information

>TIGR02902 spore_lonB ATP-dependent protease LonB	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>smart00763 AAA_PrkA PrkA AAA domain	Back alignment and domain information

>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional	Back alignment and domain information

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional	Back alignment and domain information

>PRK10365 transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>PRK15115 response regulator GlrR; Provisional	Back alignment and domain information

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional	Back alignment and domain information

>TIGR01817 nifA Nif-specific regulatory protein	Back alignment and domain information

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>TIGR01818 ntrC nitrogen regulation protein NR(I)	Back alignment and domain information

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		245
3f9v_A		595	Crystal Structure Of A Near Full-Length Archaeal Mc		3e-09

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Back alignment and structure

Iteration: 1

Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 94 CHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPXXXXXX 152 H A+ + +S +AG+V KLN R ++IAA NPK G Y P+S NI + Sbjct: 411 IHEAME-QQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFD 469 Query: 153 XXXXXXXXKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYF-YLIKGLRPQMTL 211 EQ D+ ++NYIL S ++ D++ L+ Y Y K + P++T Sbjct: 470 LIFILKDQPGEQ-DRELANYILDVH----SGKSTKNIIDIDTLRKYIAYARKYVTPKITS 524 Query: 212 EANRILTRYYQAQRKADMR---NAARTTVRLLESLIR 245 EA ++T ++ RK + T R LE+LIR Sbjct: 525 EAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIR 561

PyMOL of 3f9v

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		245
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	3e-39
3f8t_A		506	Predicted ATPase involved in replication control,	3e-30

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

 Score =  142 bits (359), Expect = 3e-39
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 10/147 (6%)

Query: 104 ISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKS 162
           +S  +AG+V KLN R ++IAA NPK G Y    P+S NI +   +LSRFDL+ +L D   
Sbjct: 420 VSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPG 479

Query: 163 EQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG-LRPQMTLEANRILTRYY 221
           E  D+ ++NYIL       + N      D++ L+ Y    +  + P++T EA  ++T ++
Sbjct: 480 E-QDRELANYILDVHSGKSTKNI----IDIDTLRKYIAYARKYVTPKITSEAKNLITDFF 534

Query: 222 QAQRKADMRN---AARTTVRLLESLIR 245
              RK            T R LE+LIR
Sbjct: 535 VEMRKKSSETPDSPILITPRQLEALIR 561

PyMOL of 3f9v

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		245
3f8t_A		506	Predicted ATPase involved in replication control,	100.0
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	99.97
1g8p_A		350	Magnesium-chelatase 38 kDa subunit; parallel beta	98.93
2r44_A		331	Uncharacterized protein; putative ATPase, structur	98.79
3nbx_X		500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.57
3k1j_A		604	LON protease, ATP-dependent protease LON; ATP-bind	98.55
2bjv_A		265	PSP operon transcriptional activator; AAA, transcr	96.92
1ojl_A		304	Transcriptional regulatory protein ZRAR; response	96.9
1ofh_A		310	ATP-dependent HSL protease ATP-binding subunit HSL	96.69
4fcw_A		311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.45
1r6b_X		758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.28
3pfi_A		338	Holliday junction ATP-dependent DNA helicase RUVB;	96.13
3hws_A		363	ATP-dependent CLP protease ATP-binding subunit CL;	96.04
1um8_A		376	ATP-dependent CLP protease ATP-binding subunit CL;	96.03
1hqc_A		324	RUVB; extended AAA-ATPase domain, complex with nuc	95.22
3syl_A		309	Protein CBBX; photosynthesis, rubisco activase, AA	95.22
3m6a_A		543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.96
1ny5_A		387	Transcriptional regulator (NTRC family); AAA+ ATPa	94.84
3dzd_A		368	Transcriptional regulator (NTRC family); sigma43 a	93.92
1g41_A		444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	93.77
4akg_A		2695	Glutathione S-transferase class-MU 26 kDa isozyme	91.82
3pxi_A		758	Negative regulator of genetic competence CLPC/MEC;	87.83
1qvr_A		854	CLPB protein; coiled coil, AAA ATPase, chaperone;	85.07
3pxg_A		468	Negative regulator of genetic competence CLPC/MEC;	84.37

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}	Back alignment and structure

Probab=100.00  E-value=2.6e-34  Score=277.31  Aligned_cols=174  Identities=22%  Similarity=0.268  Sum_probs=138.3

Q ss_pred             CCCcccccccCcccceEEEEecccchhhcccCceeccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecce
Q psy10828         40 GPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRC  119 (245)
Q Consensus        40 ~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~  119 (245)
                      ..|++++.+++   +| |.+  +||+++|||+|+|+.+++.++    ....+++||||| |+|+|+|+  |+  +||++|
T Consensus       276 ~~gLt~s~r~~---tG-~~~--~~G~l~LAdgGvl~lDEIn~~----~~~~qsaLlEaM-Ee~~VtI~--G~--~lparf  340 (506)
T 3f8t_A          276 LTDLTAVLKED---RG-WAL--RAGAAVLADGGILAVDHLEGA----PEPHRWALMEAM-DKGTVTVD--GI--ALNARC  340 (506)
T ss_dssp             HHHHSEEEEES---SS-EEE--EECHHHHTTTSEEEEECCTTC----CHHHHHHHHHHH-HHSEEEET--TE--EEECCC
T ss_pred             ccCceEEEEcC---CC-ccc--CCCeeEEcCCCeeehHhhhhC----CHHHHHHHHHHH-hCCcEEEC--CE--EcCCCe
Confidence            44677774444   66 999  999999999999665555554    124799999999 99999999  87  999999


Q ss_pred             eeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHH
Q psy10828        120 SIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYF  199 (245)
Q Consensus       120 sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYI  199 (245)
                      +||||+||+++|+++++. +|+.||++|||||||++++.|.++.+.|..                .....++.++|++||
T Consensus       341 ~VIAA~NP~~~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e----------------~~~~~ls~e~L~~yi  403 (506)
T 3f8t_A          341 AVLAAINPGEQWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE----------------QDTEVPSYTLLRRYL  403 (506)
T ss_dssp             EEEEEECCCC--CCSCGG-GGCCSCHHHHTTCSEEEETTC------------------------------CCHHHHHHHH
T ss_pred             EEEEEeCcccccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhc----------------ccCCCCCHHHHHHHH
Confidence            999999999888988888 999999999999999999999999998842                123579999999999


Q ss_pred             HHhh--ccCCCCCHHHHHHHHHHHHHHHhhcC------CCCcccchhhhhhhcC
Q psy10828        200 YLIK--GLRPQMTLEANRILTRYYQAQRKADM------RNAARTTVRLLESLIR  245 (245)
Q Consensus       200 ayAR--~~~P~LS~EA~~~I~~yY~~lR~~~~------~~~~~iTvRqLESLIR  245 (245)
                      +|||  +++|.+++++.+.|.++|..+|+...      ....++|+|+||+|||
T Consensus       404 ~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiR  457 (506)
T 3f8t_A          404 LYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVER  457 (506)
T ss_dssp             HHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred             HHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHH
Confidence            9999  58999999999999999999997421      1457899999999997

PyMOL of 3f8t

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}	Back alignment and structure

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G	Back alignment and structure

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}	Back alignment and structure

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}	Back alignment and structure

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*	Back alignment and structure

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}	Back alignment and structure

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*	Back alignment and structure

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*	Back alignment and structure

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*	Back alignment and structure

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}	Back alignment and structure

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A	Back alignment and structure

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20	Back alignment and structure

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*	Back alignment and structure

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*	Back alignment and structure

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A	Back alignment and structure

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*	Back alignment and structure

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A	Back alignment and structure

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*	Back alignment and structure

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A	Back alignment and structure

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}	Back alignment and structure

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20	Back alignment and structure

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		245
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.66
d1ny5a2		247	Transcriptional activator sigm54 (NtrC1), C-termin	81.2

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.66  E-value=2.1e-18  Score=153.65  Aligned_cols=148  Identities=14%  Similarity=0.049  Sum_probs=100.9

Q ss_pred             eEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-ccc
Q psy10828         55 IELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHY  131 (245)
Q Consensus        55 ~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~  131 (245)
                      |+|.+  ++|.+++||+||  +||+...+      ...+++|+|+| |+++|+|+++|...++|++|.++||+||+ +  
T Consensus       114 g~~~~--~~G~l~~A~~gvl~iDEi~~~~------~~~~~aLl~~m-e~~~v~i~r~g~~~~~p~~f~liaa~Np~~~--  182 (333)
T d1g8pa_         114 GEKAF--EPGLLARANRGYLYIDECNLLE------DHIVDLLLDVA-QSGENVVERDGLSIRHPARFVLVGSGNPEEG--  182 (333)
T ss_dssp             CGGGE--ECCHHHHHTTEEEEETTGGGSC------HHHHHHHHHHH-HHSEEEECCTTCCEEEECCEEEEEEECSCSC--
T ss_pred             Cccee--eccccccccccEeecccHHHHH------HHHHHHHhhhh-cCCeEEecccCceecCCCCEEEEEecCcccc--
Confidence            67888  999999999999  56666322      24789999999 99999999999999999999999999999 5  


Q ss_pred             CCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh-c-cCCCC
Q psy10828        132 DPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK-G-LRPQM  209 (245)
Q Consensus       132 ~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR-~-~~P~L  209 (245)
                                .++++++||||+.+.+.+..+.+....+..+.......+... .....-....+++-+..++ . .+..+
T Consensus       183 ----------~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~v~~  251 (333)
T d1g8pa_         183 ----------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAF-LEEWRPKDMDIRNQILEARERLPKVEA  251 (333)
T ss_dssp             ----------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHGGGCBC
T ss_pred             ----------ccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHH-HHHHHHHHHHHHHHHHHHhhcccceec
Confidence                      378999999999998877766554444433322111100000 0000001122333333333 2 56778


Q ss_pred             CHHHHHHHHHHHHHH
Q psy10828        210 TLEANRILTRYYQAQ  224 (245)
Q Consensus       210 S~EA~~~I~~yY~~l  224 (245)
                      ++++...+...+..+
T Consensus       252 ~~~~~~~~~~~~~~~  266 (333)
T d1g8pa_         252 PNTALYDCAALCIAL  266 (333)
T ss_dssp             CHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHc
Confidence            888877777776654

PyMOL of d1g8pa_

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure