Psyllid ID: psy10918
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 207 | 2.2.26 [Sep-21-2011] | |||||||
| Q96RW7 | 5635 | Hemicentin-1 OS=Homo sapi | yes | N/A | 0.821 | 0.030 | 0.255 | 7e-09 | |
| P14781 | 1010 | Contactin-1 OS=Gallus gal | yes | N/A | 0.782 | 0.160 | 0.267 | 6e-08 | |
| Q5IS61 | 345 | Opioid-binding protein/ce | no | N/A | 0.826 | 0.495 | 0.251 | 1e-07 | |
| Q14982 | 345 | Opioid-binding protein/ce | no | N/A | 0.826 | 0.495 | 0.251 | 1e-07 | |
| P32736 | 345 | Opioid-binding protein/ce | no | N/A | 0.826 | 0.495 | 0.251 | 2e-07 | |
| P11834 | 345 | Opioid-binding protein/ce | no | N/A | 0.758 | 0.455 | 0.260 | 2e-07 | |
| P13590 | 1091 | Neural cell adhesion mole | no | N/A | 0.768 | 0.145 | 0.293 | 3e-07 | |
| Q8NDA2 | 5065 | Hemicentin-2 OS=Homo sapi | no | N/A | 0.710 | 0.029 | 0.271 | 3e-07 | |
| P35329 | 862 | B-cell receptor CD22 OS=M | no | N/A | 0.714 | 0.171 | 0.259 | 8e-07 | |
| P36335 | 1092 | Neural cell adhesion mole | N/A | N/A | 0.801 | 0.152 | 0.294 | 1e-06 |
| >sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
SL+ +++E + V +C+ AVPP + W N + + + I+ Q L +++
Sbjct: 3064 ESLSVVNVREGTSVSLECESNAVPPPV-ITWYKNGRMITESTHVEILADGQMLHIKKAEV 3122
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G Y C N+ G + N F LNV P+ + ++ V+ V ++C+ PP
Sbjct: 3123 SDTGQYVCRAINVAGRDDKN-FHLNVYVPPSIEGPEREVIVETISNPVTLTCDATGIPPP 3181
Query: 130 VKFSWTFNNS-AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
+W N+ E + + IL G+ +A S +S D G C SN G +
Sbjct: 3182 T-IAWLKNHKRIENSDSLEVRILSGGSKLQIARSQHS--DSGNYTCIASNMEGKAQ 3234
|
Homo sapiens (taxid: 9606) |
| >sp|P14781|CNTN1_CHICK Contactin-1 OS=Gallus gallus GN=CNTN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80
SD+Y+ C + P+ + W N G+ L +Q + + AG Y C+
Sbjct: 337 SDLYWPC-VATGKPIPTIRWLKN----------GVSFRKGELRIQGLTFEDAGMYQCIAE 385
Query: 81 NIEGDGESNAFFLNVMYSPTCK--PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNN 138
N G +NA V PT + P ++++L A+ +V I C+ A P KFSW+
Sbjct: 386 NAHGIIYANAELKIVASPPTFELNPMKKKILA-AKGGRVIIECKPKA-APKPKFSWS-KG 442
Query: 139 SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA--VT 196
+ VN ++ HI G+L ++ ++LD G C+ N G V + A +T
Sbjct: 443 TELLVNGSRIHIWDDGSLEIINV---TKLDEGRYTCFAENNRGKANSTGVLEMTEATRIT 499
Query: 197 FHP 199
P
Sbjct: 500 LAP 502
|
Mediates cell surface interactions during nervous system development. Interaction with TNR enhances the neurite outgrowth. Gallus gallus (taxid: 9031) |
| >sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 8/179 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ E S V C + P V WRH L QG + ++ L + + R +G Y
Sbjct: 147 VNEGSSVTLLCLAIGRPEP-TVTWRH----LSVKEGQGFVSEDEYLEISDIKRDQSGEYE 201
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C N + + V Y P + GV+ +K +SCE A P +F W
Sbjct: 202 CSALNDVAAPDVRKVKITVNYPPYISKAKNT--GVSVGQKGILSCEASAVPM-AEFQWFK 258
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195
+ + I G +S + + SE DYG C +NK+G+ + AV
Sbjct: 259 EETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAV 317
|
Binds opioids in the presence of acidic lipids; probably involved in cell contact. Pan troglodytes (taxid: 9598) |
| >sp|Q14982|OPCM_HUMAN Opioid-binding protein/cell adhesion molecule OS=Homo sapiens GN=OPCML PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 8/179 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ E S V C + P V WRH L QG + ++ L + + R +G Y
Sbjct: 147 VNEGSSVTLLCLAIGRPEP-TVTWRH----LSVKEGQGFVSEDEYLEISDIKRDQSGEYE 201
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C N + + V Y P + GV+ +K +SCE A P +F W
Sbjct: 202 CSALNDVAAPDVRKVKITVNYPPYISKAKNT--GVSVGQKGILSCEASAVPM-AEFQWFK 258
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195
+ + I G +S + + SE DYG C +NK+G+ + AV
Sbjct: 259 EETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAV 317
|
Binds opioids in the presence of acidic lipids; probably involved in cell contact. Homo sapiens (taxid: 9606) |
| >sp|P32736|OPCM_RAT Opioid-binding protein/cell adhesion molecule OS=Rattus norvegicus GN=Opcml PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 70/179 (39%), Gaps = 8/179 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ E S V C + P V WRH L QG + ++ L + + R +G Y
Sbjct: 147 VNEISSVTLLCLAIGRPEP-TVTWRH----LSVKEGQGFVSEDEYLEISDIKRDQSGEYE 201
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C N + + V Y P + GV+ +K +SCE A P +F W
Sbjct: 202 CSALNDVAAPDVRKVKITVNYPPYISKAKNT--GVSVGQKGILSCEASAVPM-AEFQWFK 258
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195
++ + I G +S + + SE DYG C +NK+G+ + AV
Sbjct: 259 EDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAV 317
|
Binds opioids in the presence of acidic lipids; probably involved in cell contact. Rattus norvegicus (taxid: 10116) |
| >sp|P11834|OPCM_BOVIN Opioid-binding protein/cell adhesion molecule OS=Bos taurus GN=OPCML PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 8/165 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ E S V C + P V WRH L QG + ++ L + + R +G Y
Sbjct: 147 VNEGSSVTLLCLAIGRPEP-TVTWRH----LSVKEGQGFVSEDEYLEISDIKRDQSGEYE 201
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C N + + V Y P + + GV+ +K +SCE A P +F W
Sbjct: 202 CSALNDVAAPDVRKVKITVNYPPYIS--KAKNTGVSVGQKGILSCEASAVPM-AEFQWFK 258
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
++ + I G +S + + SE DYG C +NK+G
Sbjct: 259 EDTRLATGLDGMRIENKGHISTLTFFNVSEKDYGNYTCVATNKLG 303
|
Binds opioids in the presence of acidic lipids; probably involved in cell contact. Bos taurus (taxid: 9913) |
| >sp|P13590|NCAM1_CHICK Neural cell adhesion molecule 1 OS=Gallus gallus GN=NCAM1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 34 PVYKVEWR-------HNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86
P+ + W+ + KTL I SL L+ + AG Y C N G
Sbjct: 335 PIPSITWKTSTRNISNEEKTLDGRIVVRSHARVSSLTLKEIQYTDAGEYVCTASNTIGQ- 393
Query: 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQE--KVNISCEVDANPPDVKFSWTFNNSA-ETV 143
+S A +L V Y+P Q + V E +VNI+CEV A P V SW + +
Sbjct: 394 DSQAMYLEVQYAPKL----QGPVAVYTWEGNQVNITCEVFAYPSAV-ISWFRDGQLLPSS 448
Query: 144 NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
N + I + + S + +P+SE D+G C N+IG + F +V A T P
Sbjct: 449 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES--SEFILVQADTPSSP 503
|
This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Gallus gallus (taxid: 9031) |
| >sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--IMTNQSLVLQRVNRQSAG 73
H+ E +V DC+ PP V W + L ++ + + SLVL+ + AG
Sbjct: 3228 HVLEGQEVRLDCEADGQPP-PDVAWLKDGSPLGQDMGPHLRFYLDGGSLVLKGLRASDAG 3286
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG----VARQ-EKVNISCEVDANPP 128
YTCV N G+ ++ +NV+ PT K Q G V+R E V + C V +PP
Sbjct: 3287 AYTCVAHNPAGE-DARLHTVNVLVPPTIK---QGADGSGTLVSRPGELVTMVCPVRGSPP 3342
Query: 129 DVKFSW-------------TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168
+ SW + S T+ +++ + +G + VA SP D
Sbjct: 3343 -IHVSWLKDGLPLPLSQRTLLHGSGHTLRISKVQLADAGIFTCVAASPAGVAD 3394
|
Homo sapiens (taxid: 9606) |
| >sp|P35329|CD22_MOUSE B-cell receptor CD22 OS=Mus musculus GN=Cd22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 16 HIKEDSDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
I+ V CD P + W+ N ++ + L V+ + +GN
Sbjct: 533 EIRAGQRVLLQCDFAESNPAEVRFFWKKNG---------SLVQEGRYLSFGSVSPEDSGN 583
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP-----TCKPHQQRVLGVARQEKVNISCEVDANPPD 129
Y C+ N G+ S A+ L V+Y+P + P + G +K +SCE DANPP
Sbjct: 584 YNCMVNNSIGETLSQAWNLQVLYAPRRLRVSISPGDHVMEG----KKATLSCESDANPPI 639
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186
+++W F++S + ++ + LR L V G+ C G+N IG P
Sbjct: 640 SQYTW-FDSSGQDLH-SSGQKLRLEPLEV--------QHTGSYRCKGTNGIGTGESP 686
|
Mediates B-cell B-cell interactions. May be involved in the localization of B-cells in lymphoid tissues. Binds sialylated glycoproteins; one of which is CD45. Preferentially binds to alpha-2,6-linked sialic acid. The sialic acid recognition site can be masked by cis interactions with sialic acids on the same cell surface. Upon ligand induced tyrosine phosphorylation in the immune response seems to be involved in regulation of B-cell antigen receptor signaling. Plays a role in positive regulation through interaction with Src family tyrosine kinases and may also act as an inhibitory receptor by recruiting cytoplasmic phosphatases via their SH2 domains that block signal transduction through dephosphorylation of signaling molecules. Mus musculus (taxid: 10090) |
| >sp|P36335|NCA12_XENLA Neural cell adhesion molecule 1-B OS=Xenopus laevis GN=ncam1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 34 PVYKVEWR--HNN-----KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86
P+ + WR H N KTL +I + +L L+ + AG Y CV N G
Sbjct: 329 PIPSITWRTAHRNISSEEKTLDGHIVVKDHIRMSALTLKDIQYTDAGEYFCVASNPIG-V 387
Query: 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA-ETVNV 145
+ A + V Y+P K V+ VNI+C+V A+P SW + + N
Sbjct: 388 DMQAMYFEVQYAP--KIRGPVVVYTWEGNPVNITCDVLAHP-SAAVSWFRDGQLLPSSNF 444
Query: 146 AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKL 205
+ I T S + +P+SE D+G C N IGH+ F +V A T P +K+
Sbjct: 445 SNIKIYNGPTFSSLEVNPDSENDFGNYNCSAVNSIGHES--SEFILVQADTPSSPAIRKV 502
|
This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 207 | ||||||
| 328781815 | 920 | PREDICTED: protein turtle homolog B [Api | 0.932 | 0.209 | 0.704 | 1e-81 | |
| 307212003 | 573 | Opioid-binding protein/cell adhesion mol | 0.932 | 0.336 | 0.694 | 5e-81 | |
| 350423592 | 919 | PREDICTED: nephrin-like [Bombus impatien | 0.932 | 0.210 | 0.699 | 8e-81 | |
| 340713577 | 919 | PREDICTED: nephrin-like [Bombus terrestr | 0.932 | 0.210 | 0.699 | 8e-81 | |
| 322784890 | 594 | hypothetical protein SINV_13167 [Solenop | 0.932 | 0.324 | 0.689 | 3e-80 | |
| 383852728 | 918 | PREDICTED: protein turtle homolog A-like | 0.932 | 0.210 | 0.689 | 3e-80 | |
| 307187568 | 495 | Neuronal growth regulator 1 [Camponotus | 0.932 | 0.389 | 0.689 | 3e-80 | |
| 332026070 | 817 | Protein turtle-like protein A [Acromyrme | 0.932 | 0.236 | 0.689 | 7e-80 | |
| 91086047 | 897 | PREDICTED: similar to CG12950 CG12950-PA | 0.932 | 0.215 | 0.699 | 1e-79 | |
| 270010199 | 893 | hypothetical protein TcasGA2_TC009570 [T | 0.932 | 0.216 | 0.699 | 1e-79 |
| >gi|328781815|ref|XP_394552.4| PREDICTED: protein turtle homolog B [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 136/193 (70%), Positives = 168/193 (87%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PETR+ LG SLNP+ I+E +DVYFDC I A PPVYKVEWRH KTLH N+ QGII++NQS
Sbjct: 362 PETRIQLGTSLNPNEIREGTDVYFDCLIHAEPPVYKVEWRHLGKTLHSNVTQGIIISNQS 421
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES F+LNVM+SPTCKP+Q +V GVA+QEK NISC
Sbjct: 422 LVLQGVDRKSAGNYTCVGYNTEGDGESTPFYLNVMFSPTCKPNQTKVHGVAKQEKANISC 481
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPPDV+F WTFNNSAE+++VA +HI R+GT S+V+Y+P +ELDYGTL+CW +N+IG
Sbjct: 482 QVDANPPDVQFRWTFNNSAESIDVAASHIARAGTSSIVSYTPMTELDYGTLLCWATNRIG 541
Query: 182 HQRVPCVFHIVSA 194
HQ+VPCV+HI+ A
Sbjct: 542 HQQVPCVYHIIPA 554
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307212003|gb|EFN87898.1| Opioid-binding protein/cell adhesion molecule [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 305 bits (782), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 134/193 (69%), Positives = 167/193 (86%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PET++ LG SLNP+ I+E +DVYFDC I A P VYKVEWRH K LHHNI QGII++NQS
Sbjct: 13 PETQIQLGTSLNPNAIREGTDVYFDCLIQAEPSVYKVEWRHQGKALHHNITQGIIISNQS 72
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V GVA+QEK NISC
Sbjct: 73 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQTKVHGVAKQEKANISC 132
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA HI R+GT S+V+Y+P +ELDYGTL+CW SN+IG
Sbjct: 133 QVDANPPEVQFRWTFNNSAESIDVAAGHIARAGTSSIVSYTPMTELDYGTLLCWASNRIG 192
Query: 182 HQRVPCVFHIVSA 194
HQ+VPCV+HI+ A
Sbjct: 193 HQQVPCVYHIIPA 205
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423592|ref|XP_003493529.1| PREDICTED: nephrin-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 169/193 (87%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PETR+ LG SLNP+ I+E +DVYFDC I A PPVYKVEWRH KTLH NI QGII++NQS
Sbjct: 362 PETRIQLGTSLNPNAIREGTDVYFDCLIHAEPPVYKVEWRHLEKTLHLNITQGIIISNQS 421
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V GVA+QEK NISC
Sbjct: 422 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQTKVHGVAKQEKANISC 481
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA +HI R+GT S+V+Y+P +ELDYGTL+CW +N+IG
Sbjct: 482 QVDANPPEVQFRWTFNNSAESIDVAASHIARAGTSSIVSYTPMTELDYGTLLCWATNRIG 541
Query: 182 HQRVPCVFHIVSA 194
HQ+VPCV+HI+ A
Sbjct: 542 HQQVPCVYHIIPA 554
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340713577|ref|XP_003395318.1| PREDICTED: nephrin-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 169/193 (87%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PETR+ LG SLNP+ I+E +DVYFDC I A PPVYKVEWRH KTLH NI QGII++NQS
Sbjct: 362 PETRIQLGTSLNPNAIREGTDVYFDCLIHAEPPVYKVEWRHLEKTLHLNITQGIIISNQS 421
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V GVA+QEK NISC
Sbjct: 422 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQTKVHGVAKQEKANISC 481
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA +HI R+GT S+V+Y+P +ELDYGTL+CW +N+IG
Sbjct: 482 QVDANPPEVQFRWTFNNSAESIDVAASHIARAGTSSIVSYTPMTELDYGTLLCWATNRIG 541
Query: 182 HQRVPCVFHIVSA 194
HQ+VPCV+HI+ A
Sbjct: 542 HQQVPCVYHIIPA 554
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322784890|gb|EFZ11670.1| hypothetical protein SINV_13167 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 133/193 (68%), Positives = 165/193 (85%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PET++ LG SLNP+ I+E +DVYFDC I A PPVYKVEWRH K LHHNI QGII++NQS
Sbjct: 34 PETQIQLGTSLNPNTIREGTDVYFDCLIQAEPPVYKVEWRHQGKALHHNITQGIIISNQS 93
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V GVA+QEK NISC
Sbjct: 94 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQTKVHGVAKQEKANISC 153
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA HI R+GT S+V+Y+P +ELDYGTL+CW N IG
Sbjct: 154 QVDANPPEVQFKWTFNNSAESIDVAAGHIARAGTSSIVSYTPMTELDYGTLLCWARNHIG 213
Query: 182 HQRVPCVFHIVSA 194
Q+VPCV+HI+ A
Sbjct: 214 QQQVPCVYHIIPA 226
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383852728|ref|XP_003701877.1| PREDICTED: protein turtle homolog A-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 133/193 (68%), Positives = 167/193 (86%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PETR+ LG SLNP+ I+E +DVYFDC I A P VYKVEWRH KTLHHN+ QGII++NQS
Sbjct: 362 PETRIQLGTSLNPNAIREGTDVYFDCLIRAEPSVYKVEWRHMGKTLHHNVTQGIIISNQS 421
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V VA+QEK NISC
Sbjct: 422 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQSKVHNVAKQEKANISC 481
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA HI R+GT S+V+Y+P +ELDYGTL+CW +N+IG
Sbjct: 482 QVDANPPEVQFRWTFNNSAESIDVAAGHIARAGTSSIVSYTPMTELDYGTLLCWATNRIG 541
Query: 182 HQRVPCVFHIVSA 194
HQ+VPCV+HI+ A
Sbjct: 542 HQQVPCVYHIIPA 554
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187568|gb|EFN72580.1| Neuronal growth regulator 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 133/193 (68%), Positives = 166/193 (86%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PET++ LG SLNP+ I+E +DVYFDC I A P VYKVEWRH +K LHHNI QGII++NQS
Sbjct: 18 PETQIQLGTSLNPNAIREGTDVYFDCLIQAEPSVYKVEWRHQSKALHHNITQGIIISNQS 77
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V GVA+QEK NISC
Sbjct: 78 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQTKVHGVAKQEKANISC 137
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA HI R+GT S+V+Y+P +ELDYGTL+CW SN IG
Sbjct: 138 QVDANPPEVQFKWTFNNSAESIDVAAGHIARAGTSSIVSYTPMTELDYGTLLCWASNHIG 197
Query: 182 HQRVPCVFHIVSA 194
Q+VPCV+HI+ A
Sbjct: 198 QQQVPCVYHIIPA 210
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026070|gb|EGI66221.1| Protein turtle-like protein A [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 133/193 (68%), Positives = 165/193 (85%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PET++ LG SLNP+ I+E +DVYFDC I A P VYKVEWRH K LHHNI QGII++NQS
Sbjct: 257 PETQIQLGTSLNPNTIREGTDVYFDCLIQAEPSVYKVEWRHQGKALHHNITQGIIISNQS 316
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R+SAGNYTCVG+N EGDGES+ F+LNVM++PTCKP+Q +V GVA+QEK NISC
Sbjct: 317 LVLQGVDRKSAGNYTCVGYNTEGDGESSPFYLNVMFAPTCKPNQTKVHGVAKQEKANISC 376
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPP+V+F WTFNNSAE+++VA HI R+GT S+V+Y+P +ELDYGTL+CW SN IG
Sbjct: 377 QVDANPPEVQFKWTFNNSAESIDVAAGHIARAGTSSIVSYTPMTELDYGTLLCWASNHIG 436
Query: 182 HQRVPCVFHIVSA 194
Q+VPCV+HI+ A
Sbjct: 437 QQQVPCVYHIIPA 449
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91086047|ref|XP_973605.1| PREDICTED: similar to CG12950 CG12950-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 166/193 (86%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PE ++ LG SLNPD I+E +DVYFDC I A PPVYKVEW+HN K L+ NI GII+TNQS
Sbjct: 350 PEAKIILGTSLNPDSIREGTDVYFDCVINAHPPVYKVEWKHNGKALNINIQAGIIITNQS 409
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R +AGNYTCVG+N EGDGESN F+LNVMY+PTCKP+Q R+ GVA+QE+ I+C
Sbjct: 410 LVLQGVSRSTAGNYTCVGYNTEGDGESNPFYLNVMYAPTCKPNQSRIYGVAKQEQAQITC 469
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPPDV+F WTFNNSA++V+VAQ+HI RSGT SVV+Y+P +ELDYGTL+C+ SN+IG
Sbjct: 470 QVDANPPDVQFRWTFNNSADSVDVAQSHIARSGTSSVVSYTPMTELDYGTLLCYASNRIG 529
Query: 182 HQRVPCVFHIVSA 194
QRVPCVFHI++A
Sbjct: 530 TQRVPCVFHIIAA 542
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270010199|gb|EFA06647.1| hypothetical protein TcasGA2_TC009570 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 166/193 (86%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PE ++ LG SLNPD I+E +DVYFDC I A PPVYKVEW+HN K L+ NI GII+TNQS
Sbjct: 346 PEAKIILGTSLNPDSIREGTDVYFDCVINAHPPVYKVEWKHNGKALNINIQAGIIITNQS 405
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
LVLQ V+R +AGNYTCVG+N EGDGESN F+LNVMY+PTCKP+Q R+ GVA+QE+ I+C
Sbjct: 406 LVLQGVSRSTAGNYTCVGYNTEGDGESNPFYLNVMYAPTCKPNQSRIYGVAKQEQAQITC 465
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+VDANPPDV+F WTFNNSA++V+VAQ+HI RSGT SVV+Y+P +ELDYGTL+C+ SN+IG
Sbjct: 466 QVDANPPDVQFRWTFNNSADSVDVAQSHIARSGTSSVVSYTPMTELDYGTLLCYASNRIG 525
Query: 182 HQRVPCVFHIVSA 194
QRVPCVFHI++A
Sbjct: 526 TQRVPCVFHIIAA 538
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 207 | ||||||
| FB|FBgn0086604 | 1201 | CG12484 [Drosophila melanogast | 0.971 | 0.167 | 0.446 | 5.2e-43 | |
| FB|FBgn0259213 | 1064 | CG42313 [Drosophila melanogast | 0.927 | 0.180 | 0.446 | 2.2e-42 | |
| FB|FBgn0016061 | 939 | side "sidestep" [Drosophila me | 0.845 | 0.186 | 0.369 | 2.7e-26 | |
| RGD|1564772 | 5548 | Hmcn1 "hemicentin 1" [Rattus n | 0.801 | 0.029 | 0.273 | 5.5e-11 | |
| UNIPROTKB|F1PXF9 | 5637 | HMCN1 "Uncharacterized protein | 0.801 | 0.029 | 0.261 | 7.1e-11 | |
| UNIPROTKB|Q96RW7 | 5635 | HMCN1 "Hemicentin-1" [Homo sap | 0.801 | 0.029 | 0.261 | 1.9e-10 | |
| UNIPROTKB|E1BE11 | 5588 | HMCN1 "Uncharacterized protein | 0.801 | 0.029 | 0.273 | 3e-10 | |
| UNIPROTKB|H9KZA3 | 5442 | HMCN1 "Uncharacterized protein | 0.806 | 0.030 | 0.268 | 1.6e-09 | |
| UNIPROTKB|E1B9K4 | 5073 | E1B9K4 "Uncharacterized protei | 0.705 | 0.028 | 0.275 | 2.5e-09 | |
| ZFIN|ZDB-GENE-080204-42 | 396 | zgc:172106 "zgc:172106" [Danio | 0.608 | 0.318 | 0.317 | 5.4e-09 |
| FB|FBgn0086604 CG12484 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 5.2e-43, P = 5.2e-43
Identities = 91/204 (44%), Positives = 127/204 (62%)
Query: 1 IPETRLTLG-RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN 59
IP L LG SLN ++E DV+F+C+I + P +Y+V WRHN K L +N A+GI ++N
Sbjct: 376 IPVVSLELGTNSLNST-LREGIDVFFECNIKSNPWIYEVSWRHNGKILTNNPAEGIAVSN 434
Query: 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNI 119
QSLVLQ +R +G YTCVG N EGDGESN L++ ++P C+P Q+ R E V +
Sbjct: 435 QSLVLQNASRARSGIYTCVGSNREGDGESNPVQLDIRFAPVCRPRQRLSYSSGRHETVKV 494
Query: 120 SCEVDANPPDVKFSWTFN-NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
+CE+DANP + + W FN ETV++ + + S+ Y+P +E DYGTL+CW +N
Sbjct: 495 ACEIDANPAEATYVWKFNATQGETVDIPASQVAVDRGRSIAHYTPMTENDYGTLLCWATN 554
Query: 179 KIGHQRVPCVFHIVSAVTFHPPFN 202
+IG Q PCV+ I A P N
Sbjct: 555 EIGDQSEPCVYTIFPAGEPDPLLN 578
|
|
| FB|FBgn0259213 CG42313 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 459 (166.6 bits), Expect = 2.2e-42, P = 2.2e-42
Identities = 87/195 (44%), Positives = 120/195 (61%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
P L LG +L PD IKE DVYF+C + + P K+ W HN L HN + +I +NQS
Sbjct: 367 PLVTLRLGSTLTPDDIKEGDDVYFECHVQSNPQWRKLLWLHNGIHLEHNTSARVIRSNQS 426
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL--GVARQEKVNI 119
LVLQ++ + AGNY C N EG+ SN L V Y+P CK H RV+ G ++ E V +
Sbjct: 427 LVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPMCK-HADRVILIGASKDETVEV 485
Query: 120 SCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
CE+ A+PP F W FNNS ET++V +G+ S++ Y+P ++ DYGTL CW SN+
Sbjct: 486 VCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSILKYTPVTDQDYGTLSCWASNE 545
Query: 180 IGHQRVPCVFHIVSA 194
+G Q+ PC+F +V A
Sbjct: 546 VGTQQHPCLFQVVLA 560
|
|
| FB|FBgn0016061 side "sidestep" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 68/184 (36%), Positives = 95/184 (51%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
E +V F C A PPV W N + + IM L ++ R+SAG Y+C
Sbjct: 442 EGQNVTFKCRADARPPVTSYSWFKNGMRMSGESTE--IMH-----LTQLERESAGAYSCG 494
Query: 79 GFNIEGDGESNAFFLNVMYSPTCKPH-QQRVLGVARQEKVNISCEVDANPPD-VKFSWTF 136
N EG+ S++ L V +SP CK +Q +G + + CEVDA+PPD V+FSWT+
Sbjct: 495 ATNTEGETRSSSLTLKVQFSPRCKSGTEQTSIGAVSLHSILVKCEVDADPPDSVRFSWTY 554
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVT 196
NN+ V + I +G S V Y P ++ + TL CW SN +G Q PC+ HI+ A T
Sbjct: 555 NNTRNVSPVLNSRIQSNGLASTVTYLPQTDSELITLACWASNAVGRQTTPCLVHILPANT 614
Query: 197 FHPP 200
P
Sbjct: 615 PEAP 618
|
|
| RGD|1564772 Hmcn1 "hemicentin 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 47/172 (27%), Positives = 76/172 (44%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
SL+ +++E + V +C+ AVPP + W N + + + I+ Q L ++R
Sbjct: 2978 SLSIVNVREGTSVSLECESNAVPPPV-ITWSKNGRMIPDSSNVAILTGGQMLHIRRAEVA 3036
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N+ G + N F LNV PT + + V+ V ++C+ PP
Sbjct: 3037 DTGQYVCRAINVAGRDDKN-FHLNVYVPPTIEGPETEVIVETMSNPVTLTCDATGIPPPT 3095
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W N+ E + +AHIL G+ +A S + G C SN G
Sbjct: 3096 -ITWLKNHKPIENSDPLEAHILSGGSKLQIARLQRS--NRGNYTCVASNMEG 3144
|
|
| UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 45/172 (26%), Positives = 78/172 (45%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
SL+ +++E + +C+ AVPP + W N + + + I+ Q L +++
Sbjct: 3067 SLSVVNVREGTSASLECESNAVPPPV-ITWYKNGQMITESTHLEILADGQMLHIKKAEVS 3125
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N+ G + N F LNV P+ + + +V+ V ++C+ PP +
Sbjct: 3126 DTGQYVCRAINVAGRDDKN-FHLNVYVPPSIEGPENKVVVETISNPVTLTCDATGIPPPM 3184
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W N+ E + + HIL G+ +A S +S D G C SN G
Sbjct: 3185 -IAWLKNHKPIENSDSLEVHILSGGSKLQIARSQHS--DSGNYTCIASNMEG 3233
|
|
| UNIPROTKB|Q96RW7 HMCN1 "Hemicentin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 168 (64.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
SL+ +++E + V +C+ AVPP + W N + + + I+ Q L +++
Sbjct: 3065 SLSVVNVREGTSVSLECESNAVPPPV-ITWYKNGRMITESTHVEILADGQMLHIKKAEVS 3123
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N+ G + N F LNV P+ + ++ V+ V ++C+ PP
Sbjct: 3124 DTGQYVCRAINVAGRDDKN-FHLNVYVPPSIEGPEREVIVETISNPVTLTCDATGIPPPT 3182
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W N+ E + + IL G+ +A S +S D G C SN G
Sbjct: 3183 -IAWLKNHKRIENSDSLEVRILSGGSKLQIARSQHS--DSGNYTCIASNMEG 3231
|
|
| UNIPROTKB|E1BE11 HMCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 47/172 (27%), Positives = 72/172 (41%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
SL+ +++E + V +C AVPP + W N + L + I+ Q L + +
Sbjct: 3018 SLSVVNVREGTSVSLECGSNAVPPPV-ITWYKNGRMLTESARLEILADGQMLHITKAEVS 3076
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N+ G + N F LNV P+ + + V V ++C+ PP
Sbjct: 3077 DTGQYVCRAINVAGRDDKN-FHLNVYVPPSIEGPENEVTVETVSNPVTLTCDATGIPPP- 3134
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W N+ E + HIL G +A S +S D G C SN G
Sbjct: 3135 SIAWLKNHRPIENSGSLEVHILSGGRKLQIARSQHS--DSGNYTCIASNMEG 3184
|
|
| UNIPROTKB|H9KZA3 HMCN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 47/175 (26%), Positives = 71/175 (40%)
Query: 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
G S+ +++ + V +C A+PP + W N + + + I+ Q+L ++
Sbjct: 2981 GTSVTVFNVRVGTPVMLECKASAIPPPV-ITWYKNRRMISESANVEILADGQTLQIKGAE 3039
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCK-PHQQRVLGVARQEKVNISCEVDANP 127
G Y C NI G + N F LNV P + P ++ V+ V C+ P
Sbjct: 3040 VSDTGQYVCKAINIAGRDDKN-FHLNVYVPPNIEGPEEELVIETI-SNPVAFICDATGIP 3097
Query: 128 PDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P W N E N HI G+ +A+S LD GT C SN G
Sbjct: 3098 PPT-LVWLKNGKPLENSNSLDVHIFSGGSRLQIAHS--QLLDSGTYTCIASNVEG 3149
|
|
| UNIPROTKB|E1B9K4 E1B9K4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 46/167 (27%), Positives = 78/167 (46%)
Query: 15 DH-IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--IMTNQSLVLQRVNRQS 71
+H + E DV DC++ PP Y V W + L ++ + + SLVL+ +
Sbjct: 3231 EHSVLEGQDVQLDCEVDGQPPPYVV-WLKDGSPLDESVGPYLWFYLNGSSLVLKDLRASD 3289
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCK--PHQQRVLGVARQEKVNISCEVDANPPD 129
+G YTCV N G+ ++ + +NV+ PT + P L + V+++C V +PP
Sbjct: 3290 SGAYTCVARNAAGE-DAKLYTVNVLVPPTIEQGPEGAGTLVHRLGDLVSMACPVRGSPP- 3347
Query: 130 VKFSWT-------------FNNSAETVNVAQAHILRSGTLSVVAYSP 163
+ SW ++S T+ ++Q + SGT + VA SP
Sbjct: 3348 IHVSWLKDGLPLPLSHRTHLHSSGRTLRISQVQLADSGTFTCVAASP 3394
|
|
| ZFIN|ZDB-GENE-080204-42 zgc:172106 "zgc:172106" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 47/148 (31%), Positives = 69/148 (46%)
Query: 40 WRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
W N K+ ++ Q NQ L+LQ V+ + +GNY+C +++ D S A LN+ Y P
Sbjct: 160 WYKNGKSFSESVRQ-----NQ-LILQSVSSEDSGNYSCAVRDLK-DLPSPALTLNIRYPP 212
Query: 100 TCKPHQQRVLGVARQEK---VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156
K V G A E V +SC D+NPP V F+W N + V Q+
Sbjct: 213 --KSVSVSVSGSAVIESGDSVTLSCSSDSNPPAVNFTWFKENQSSAVGSGQS-------F 263
Query: 157 SVVAYSPNSELDYGTLICWGSNKIGHQR 184
S+ +++ + G C NK G QR
Sbjct: 264 SISSFNSSHS---GQYYCEAENKYGSQR 288
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 207 | |||
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 5e-07 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-06 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 2e-05 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 2e-04 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 4e-04 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 4e-04 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 0.001 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 0.001 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 0.002 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 0.002 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-07
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
E V C PV + W + K L + + + +L ++ V+ + +G YTCV
Sbjct: 1 EGQSVTLTCP-AEGNPVPNITWLKDGKPLPESN--RFVASGSTLTIKSVSLEDSGLYTCV 57
Query: 79 GFNIEG 84
N G
Sbjct: 58 AENSAG 63
|
Length = 63 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-06
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
++E F C + P V W + + L + +T +L + V
Sbjct: 12 VQEGESARFTCTVTGDPDP-TVSWFKDGQPL--RSSDRFKVTYEGGTYTLTISNVQPDDE 68
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G YTCV N G+ E++A L V
Sbjct: 69 GKYTCVATNSAGEAEASA-ELTV 90
|
Length = 90 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-05
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 38 VEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V WR + + L+ + + I+ + +L++ + G Y CV N+ G+ ES A L+V
Sbjct: 29 VSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 2e-04
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVG 79
DV +C A P + W + L ++ ++ I + SL + V + G YTC
Sbjct: 1 GGDVIIECKPKAAPKP-TISWSKGTELLTNS-SRICIWPDGSLEILNVTKSDEGKYTCFA 58
Query: 80 FNIEGDGESNA 90
N G S
Sbjct: 59 ENFFGKANSTG 69
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 4e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---MTNQSLVLQRVNRQSA 72
+KE V C + P +V W L + + + +L + V + +
Sbjct: 5 TVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 73 GNYTCVGFNIEGDGESNA 90
G YTC N G S
Sbjct: 64 GTYTCAATNSSGSASSGT 81
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 4e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---MTNQSLVLQRVNRQSA 72
+KE V C + P +V W L + + + +L + V + +
Sbjct: 5 TVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 73 GNYTCVGFNIEGDGESNA 90
G YTC N G S
Sbjct: 64 GTYTCAATNSSGSASSGT 81
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 36.3 bits (83), Expect = 0.001
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ------GIIMTNQSLVLQRVNRQSAGNYT 76
V C + + PP + W N K L ++ G + +L + V + +G YT
Sbjct: 1 VTLTC-LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59
Query: 77 CVGFNIEGDGESNA 90
CV N G ++
Sbjct: 60 CVASNSAGTVSASV 73
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.001
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 13/87 (14%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL--HHNIAQGIIMTNQSLVLQRVN 68
+ +P + E DV C P W + L N V+
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPG-NPPPNYTWYKDGVPLSSSQNG----------FFTPNVS 53
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +G YTCV N G SN L V
Sbjct: 54 AEDSGTYTCVASNGGGGKTSNPVTLTV 80
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 27 CDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRVNRQSAGNYTCVG 79
C + P V V W K L + G +L + V + +G YTCV
Sbjct: 8 CSVSGPPQVD-VTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 35.4 bits (81), Expect = 0.002
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
V ++C + PP SW N S + TL++ + + D GT C
Sbjct: 16 GGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSS--GSTLTLSSVTSE---DSGTYTC 70
Query: 175 WGSN 178
SN
Sbjct: 71 VASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 207 | |||
| KOG3513|consensus | 1051 | 99.95 | ||
| KOG3513|consensus | 1051 | 99.95 | ||
| KOG4194|consensus | 873 | 99.93 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.91 | |
| KOG4221|consensus | 1381 | 99.9 | ||
| KOG4221|consensus | 1381 | 99.89 | ||
| KOG4194|consensus | 873 | 99.89 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.87 | |
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.86 | |
| KOG4222|consensus | 1281 | 99.81 | ||
| KOG4222|consensus | 1281 | 99.81 | ||
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.78 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.73 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.73 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.73 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.73 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.72 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.7 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.7 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.7 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.7 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.69 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.68 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.68 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.68 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.67 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.67 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.67 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.67 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.67 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.66 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.66 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.66 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.65 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.65 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.65 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.65 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.65 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.65 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.65 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.65 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.64 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.64 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.64 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.64 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.64 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.64 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.64 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.64 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.64 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.63 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.63 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.63 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.63 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.63 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.62 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.62 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.62 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.62 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.62 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.62 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.62 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.61 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.61 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.61 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.61 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.61 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.61 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.61 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.61 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.61 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.61 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.61 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.6 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.6 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.6 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.6 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.6 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.6 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.6 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.6 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.6 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.6 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.59 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.59 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.59 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.59 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.59 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.59 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.59 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.59 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.59 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.58 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.58 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.58 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.57 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.57 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.57 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.57 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.57 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.57 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.56 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.56 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.56 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.56 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.56 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.56 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.56 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.56 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.56 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.55 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.55 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.55 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.55 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.54 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.54 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.54 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.54 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.54 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.54 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.53 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.53 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.53 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.53 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.53 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.52 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.52 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.52 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.52 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.52 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.52 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.51 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.51 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.51 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.5 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.5 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.5 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.5 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.5 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.5 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.5 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.5 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.49 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.49 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.49 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.49 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.49 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.48 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.48 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.48 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.47 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.47 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.46 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.46 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.46 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.46 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.46 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.45 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.45 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.45 | |
| KOG3515|consensus | 741 | 99.45 | ||
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.45 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.44 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.44 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.44 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.43 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.43 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.41 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.41 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.41 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.4 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.4 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.39 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.38 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.38 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.38 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.37 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.36 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.36 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.36 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.33 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.33 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.33 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.31 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 99.31 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.31 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.3 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.29 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.29 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.29 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.29 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.29 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.28 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 99.28 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.28 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.27 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 99.27 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.27 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.26 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.26 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.25 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 99.25 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.22 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 99.22 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.22 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 99.21 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 99.18 | |
| smart00409 | 86 | IG Immunoglobulin. | 99.18 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 99.15 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 99.15 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.14 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 99.13 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.12 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 99.12 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.1 | |
| smart00409 | 86 | IG Immunoglobulin. | 99.1 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 99.1 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 99.1 | |
| PHA03376 | 221 | BARF1; Provisional | 99.09 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 99.07 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 99.07 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 99.05 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.04 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.04 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.04 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 99.01 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.99 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.97 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.97 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.96 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.93 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.92 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.92 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.91 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.91 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.89 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.88 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.87 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.87 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.86 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.86 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.86 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.85 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.85 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.82 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.81 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.8 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.78 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.77 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.77 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.77 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.77 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.76 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.76 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.76 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.76 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.75 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.73 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.73 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.72 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.71 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.7 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.69 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.69 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.69 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.66 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.66 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.66 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.66 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.65 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.65 | |
| KOG3515|consensus | 741 | 98.64 | ||
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.63 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.63 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.63 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.61 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.61 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.61 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.61 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.6 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.6 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.59 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.58 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.58 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.57 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.57 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.57 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.55 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.53 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.52 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.51 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.49 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.48 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 98.48 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.47 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.46 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.44 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.43 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 98.42 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.39 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.39 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 98.35 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 98.34 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.34 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 98.33 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.32 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 98.32 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.31 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.29 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.28 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 98.28 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 98.27 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 98.26 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 98.26 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 98.26 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.25 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 98.24 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.22 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 98.21 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 98.2 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 98.2 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 98.19 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.19 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 98.18 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.18 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 98.17 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.17 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 98.17 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 98.17 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 98.16 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.14 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.14 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.14 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 98.12 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 98.1 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 98.09 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 98.09 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 98.09 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 98.08 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.07 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 98.06 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 98.04 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.03 | |
| KOG1480|consensus | 909 | 98.01 | ||
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 98.0 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.96 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.95 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.94 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.88 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.87 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.85 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.85 | |
| PHA03376 | 221 | BARF1; Provisional | 97.82 | |
| KOG1480|consensus | 909 | 97.81 | ||
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.77 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.74 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.73 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.68 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.64 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 97.63 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.61 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.61 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.54 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.52 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.42 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.4 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.34 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 97.26 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 97.19 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.05 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 97.01 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.96 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 96.85 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 96.85 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.85 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 96.71 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 96.62 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 96.49 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 96.42 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 96.41 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 96.41 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 96.2 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 95.97 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 95.88 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 95.85 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 95.7 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 95.59 | |
| KOG4597|consensus | 560 | 95.59 | ||
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 95.52 | |
| KOG0613|consensus | 1205 | 95.39 | ||
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 94.59 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 94.31 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 94.3 | |
| KOG1026|consensus | 774 | 94.21 | ||
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 93.92 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.96 | |
| KOG4597|consensus | 560 | 92.89 | ||
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 92.77 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 92.22 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 91.32 | |
| PF11049 | 71 | KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-assoc | 89.11 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 89.1 | |
| PF03921 | 91 | ICAM_N: Intercellular adhesion molecule (ICAM), N- | 88.52 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 87.38 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 86.89 | |
| cd05890 | 98 | Ig2_Nectin-1_like Second immunoglobulin (Ig) domai | 86.45 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 85.25 | |
| PHA03240 | 258 | envelope glycoprotein M; Provisional | 84.79 | |
| cd05890 | 98 | Ig2_Nectin-1_like Second immunoglobulin (Ig) domai | 84.29 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 82.3 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=180.53 Aligned_cols=177 Identities=16% Similarity=0.285 Sum_probs=143.2
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcc-ccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT-LHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
......|+.|.|.|.+.|+|.| +|.|.|.+.. +.. .......+..|.|.+++.+|.|.|.|.+.|..|.. .....
T Consensus 250 ~~~a~~G~~v~LECfA~G~P~P-~i~W~k~~g~~~~~--r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~ 325 (1051)
T KOG3513|consen 250 TETALKGQSVKLECFALGNPTP-QIKWRKVDGKPPPR--RATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGH 325 (1051)
T ss_pred cccccCCCeEEEEEEecCCCCC-cEEEEeCCCCCCCc--ceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEE
Confidence 4455679999999999999998 9999998774 332 22334446789999999999999999999999965 66888
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
++|..+|.... .+....+..|+.+.|.|.+.|.|.| +++|++||..+.............+ .|.|.+++..|+|.|
T Consensus 326 v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p-~v~WlkNg~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~Y 401 (1051)
T KOG3513|consen 326 VTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNP-TVKWLKNGEPLEPAERDPRYKIDDG--TLIISNVQESDSGVY 401 (1051)
T ss_pred EEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCC-ceEEeeCCeecCccCCCcceEEeCC--EEEEEecccccCeEE
Confidence 99999988775 4556667789999999999999998 9999999988764333222333333 489999999999999
Q ss_pred EEEEecCCCCCccceEEEEeecccCC
Q psy10918 173 ICWGSNKIGHQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~~~v~~~~~~~ 198 (207)
.|.|.|..|....++.|.|+...|..
T Consensus 402 QC~A~Nk~G~i~anA~L~V~a~~P~f 427 (1051)
T KOG3513|consen 402 QCIAENKYGTIYANAELKVLASAPVF 427 (1051)
T ss_pred EeeeecccceEeeeeEEEEEccCCCC
Confidence 99999999999889999888654433
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=180.40 Aligned_cols=180 Identities=22% Similarity=0.335 Sum_probs=147.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
|...+++.++..|++++|.|.+.+.|.+ .++|++||.++...+ ..+.....+.|.|.+++..|+|.|.|.+.|..|..
T Consensus 334 w~~~~~d~~~~~gs~v~~eC~a~g~P~p-~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i 412 (1051)
T KOG3513|consen 334 WLQKPQDTEADTGSNVTLECKASGKPNP-TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTI 412 (1051)
T ss_pred hhcccceeEecCCCCeEEEEEecCCCCC-ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceE
Confidence 3445677888999999999999999998 999999999998533 34466778899999999999999999999999988
Q ss_pred ccceEEEEEEeC-CcccCCCCc-eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 87 ESNAFFLNVMYS-PTCKPHQQR-VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 87 ~~~~~~l~v~~~-~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
.+ .+.|+|+.. |.+...... ...+..|..+.+.|...+.|.+ .+.|.+.+. ......+..+..+|+ |.|.++
T Consensus 413 ~a-nA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p-~~~W~k~~~-~~~~~~r~~i~edGt---L~I~n~ 486 (1051)
T KOG3513|consen 413 YA-NAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP-KVSWLKGGE-KLLQSGRIRILEDGT---LEISNV 486 (1051)
T ss_pred ee-eeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc-eEEEEcCCc-ccccCceEEECCCCc---EEeccc
Confidence 55 677999865 555433322 2345689999999999999998 999999887 344455666777776 899999
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
+.+|+|.|+|.|.|.+|.......|.|+.+
T Consensus 487 t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 487 TRSDAGKYTCVAENKLGKAESTGNLIVKDA 516 (1051)
T ss_pred CcccCcEEEEEEEcccCccceEEEEEEecC
Confidence 999999999999999999988877766643
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=157.10 Aligned_cols=192 Identities=17% Similarity=0.297 Sum_probs=147.2
Q ss_pred eeeecCCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC---eE--e----------cCCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG---II--M----------TNQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~---~~--~----------~~~~l~i~~~~~~d 71 (207)
+...+.......|++++|+|.+.+ ...|..+.|.+++.......... +. . -.+.|.+.+++..|
T Consensus 506 I~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td 585 (873)
T KOG4194|consen 506 IVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTD 585 (873)
T ss_pred eecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeeccc
Confidence 334455566677999999999966 23344999999886444311100 00 0 01349999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc--ceeE
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV--AQAH 149 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~ 149 (207)
+|.|.|.+.|.+|+.+++.+.|.|...|.+... |.......|+-+.|.|.+.|.|.| .|.|.|+|+...... .+.+
T Consensus 586 ~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~P-eIawqkdggtdFPAA~eRRl~ 663 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGTDFPAARERRLH 663 (873)
T ss_pred CceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCc-ceeehhcCCCCCchhhhheee
Confidence 999999999999999999999999999988754 455567899999999999999998 999999887643322 2334
Q ss_pred EeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCCc
Q psy10918 150 ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQ 203 (207)
Q Consensus 150 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~~ 203 (207)
+..+.. .+.|.+++.+|+|.|+|.|.|..|..+..+++.|...+.+..|...
T Consensus 664 Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~ 715 (873)
T KOG4194|consen 664 VMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLED 715 (873)
T ss_pred ecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccc
Confidence 444444 4778899999999999999999999988999998888766666543
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=137.51 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=111.0
Q ss_pred eeecCCCcccCCCcEEEEeEeccCC----------CCcEEEEEECCccc--ccc-cc--------CCeEecCCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVP----------PVYKVEWRHNNKTL--HHN-IA--------QGIIMTNQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~----------~~~~i~W~~~~~~~--~~~-~~--------~~~~~~~~~l~i~~~ 67 (207)
+..+....+.+|+++.|.|.+.+.+ ..+++.|+|++... ... .. ......+..|.|.++
T Consensus 26 ~~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v 105 (227)
T PHA02826 26 GGDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNV 105 (227)
T ss_pred CcCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCC
Confidence 3445667788999999999986633 12389999987542 110 10 011122568999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-----CCCceEEEEEcCceee
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-----PPDVKFSWTFNNSAET 142 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~ 142 (207)
+.+|+|.|.|.+.|..+.. ...+.|.|..++ ....+..|+.+.|.|.+.+. |.| ++.|++++..+.
T Consensus 106 ~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~l~ 176 (227)
T PHA02826 106 INIDEGIYICTISSGNICE-ESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNIVL 176 (227)
T ss_pred ChHHCEEEEEEEEECCcce-EEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEECC
Confidence 9999999999999976554 445666664221 12245689999999998643 345 999999998754
Q ss_pred eccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 143 VNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.. ....+. .....|.|.+++.+|+|.|+|.|+...
T Consensus 177 ~~-~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 177 YT-DRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CC-CCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 22 222222 223469999999999999999999865
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=155.20 Aligned_cols=182 Identities=19% Similarity=0.314 Sum_probs=141.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.|...+.+..+..|+++.|.|.+.+.+.+ .+.|.+|..++.... +.+..-++.|.|..++..|.|.|+|.+.++....
T Consensus 142 ~f~~~~~~~t~~~g~ta~f~c~vn~e~~p-~i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 142 DFALQPESTTLLYGQTALFSCEVNAEPVP-TIMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred ccccCccceeEecCCcEEEEEEEcCccCc-eeEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCC
Confidence 34444567788999999999999887776 899999999877654 5556668899999999999999999999877666
Q ss_pred ccceEEEEEEeCCccc-----CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 87 ESNAFFLNVMYSPTCK-----PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 87 ~~~~~~l~v~~~~~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
.+....|+|...+... ...+....+..|+.+.|.|.+.+.|.| .|.|.+|+..+..+. .++...+. +.|.|
T Consensus 220 ~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p-~v~Wlrng~~i~~ds--~rivl~g~-~slli 295 (1381)
T KOG4221|consen 220 TSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKP-SVKWLRNGEKISVDS--YRIVLVGG-SSLLI 295 (1381)
T ss_pred ccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCC-ceEEeeCCeeeeecc--eEEEEecc-cceEE
Confidence 6777788888443211 223444567799999999999999998 999999998877655 33333322 34889
Q ss_pred ecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 162 SPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
.+++..|+|.|+|.|+|......+++++.|+..
T Consensus 296 S~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 296 SNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred eccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 999999999999999996666666777777654
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=158.06 Aligned_cols=181 Identities=18% Similarity=0.323 Sum_probs=141.7
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.|...+...++.+|+++.|.|.+.+.+.+ .+.|.+|+..+.-+.........+.|.|.+++.+|+|.|+|.+.|...
T Consensus 237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p-~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D 315 (1381)
T KOG4221|consen 237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKP-SVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTND 315 (1381)
T ss_pred ceeeecCCCccccccCCcEEEEEEecCCCCC-ceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCc
Confidence 3446667788899999999999999999998 999999999887654333334467899999999999999999998655
Q ss_pred CCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 85 DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
.. .....|+|+.+|.+.... ......++..+.|.|.+.+.|.+ .+.|+|||..+.. .+..++...+. |.|..+
T Consensus 316 ~i-dasaev~V~a~P~~~~~p-~~l~A~e~~die~ec~~~g~p~p-~v~w~kNgd~~ip-sdy~ki~~~~~---lrIlgi 388 (1381)
T KOG4221|consen 316 SI-DASAEVTVLAPPGFTKAP-TTLVAHESMDIEFECPVSGKPIP-TVRWYKNGDRIIP-SDYFKIVGGGN---LRILGI 388 (1381)
T ss_pred cc-ccceEEEEEcCCCCCCCC-cceeeeeccceeEeCCCCCCCcc-eEEEEecCcccCc-ccceEecCCCC---cEEEEE
Confidence 44 446678999888776543 33445679999999999999887 9999999887543 33344444443 666677
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
-..|.|.|.|.+.|..|.....+.+.+..
T Consensus 389 ~~sdeg~yQcvaen~~G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 389 VKSDEGFYQCVAENDAGSAQAAAQLEVVP 417 (1381)
T ss_pred ecccchhhhhhhccCcccccchhhheecc
Confidence 78899999999999999888777775554
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=146.37 Aligned_cols=181 Identities=17% Similarity=0.333 Sum_probs=139.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcc-ccccccCC--eEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT-LHHNIAQG--IIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~-~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+|..++.+.++..|+...|.|.+.|.|.| +|.|.|+|.. ++....++ .......+.|.+++.+|.|.|+|.+.|..
T Consensus 614 sFtktP~dltl~tg~mArl~CaAtG~P~P-eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~A 692 (873)
T KOG4194|consen 614 SFTKTPEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVA 692 (873)
T ss_pred ccccCcccceeecccceeeeeeccCCCCc-ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccc
Confidence 45567788889999999999999999998 9999998876 55433222 23345679999999999999999999999
Q ss_pred CCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
|.. +....|.|...|.+... .....+..|+.+.|.|.+.+.|+.+++.|+|+++++..... +...++ .-.|.+.+
T Consensus 693 G~i-sanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r--h~f~d~-dQllvv~~ 767 (873)
T KOG4194|consen 693 GQI-SANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER--HTFPDG-DQLLVVKE 767 (873)
T ss_pred cce-eeceEEEEecCCccccc-ccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec--ccCCCC-CeEEEEEe
Confidence 987 55778999988876543 34456789999999999999998459999999888654321 111222 23577788
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
...+|+|.|+|.++|..|.......+.++.
T Consensus 768 ~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 768 NLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred hhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 889999999999999998765555554443
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=133.51 Aligned_cols=165 Identities=20% Similarity=0.240 Sum_probs=109.8
Q ss_pred CCcccCCCcEEEEeEe-----ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc-
Q psy10918 14 PDHIKEDSDVYFDCDI-----VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE- 87 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~- 87 (207)
+..+.+|..+.|.|.. .+.+.+ .++|+++.. +.. .......++.|.|.+++.+|.|.|+|.+.|..+...
T Consensus 130 ~~~~~~g~~~~i~C~~~~~~~~~~~~~-~i~W~k~~~-~~~--~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 130 PQIVNERSTGEMVCPNINAFIASNVNA-DIIWSGHRR-LRN--KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred cceecccCcEEEECCChhhcccCCCCc-eEEEccCCc-cCC--cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 3456789999999972 345555 999988643 221 122223357899999999999999999998776542
Q ss_pred --cceEEEEEEeCCccc-CCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccc--eeEEee-------c
Q psy10918 88 --SNAFFLNVMYSPTCK-PHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVA--QAHILR-------S 153 (207)
Q Consensus 88 --~~~~~l~v~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~--~~~~~~-------~ 153 (207)
...+.|.|..+...+ ...+....+..|+.+.|.|.+.+.|++ +.+.|++||..+..... ..++.. .
T Consensus 206 ~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~ 285 (326)
T PHA02785 206 NVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTD 285 (326)
T ss_pred eEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccc
Confidence 223345554211111 112344456679999999999998763 38999999876532111 111111 0
Q ss_pred C---ceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 154 G---TLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 154 ~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 286 ~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 286 KRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred cceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 1 1346999999999999999999998743
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=132.52 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=108.2
Q ss_pred cCCCcccCCCcEEEEeEe-----ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDI-----VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.....+.+|+.+.|.|.+ .+.+.+ ++.|+|++..... ......+..|.|.++..+|+|.|+|.+.|..+..
T Consensus 33 ~~~~~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~~~~---~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 33 FASFMELENEPVILPCPQINTLSSGYNIL-DILWEKRGADNDR---IIPIDNGSNMLILNPTQSDSGIYICITKNETYCD 108 (326)
T ss_pred cchhhhhcCCCEEEECCCccccccCCCCc-eEEEEECCCccce---EEEccCCceEEEcccCcccCeEEEEEEECCCcce
Confidence 344456789999999997 567766 9999999753221 1112223458899999999999999999887655
Q ss_pred ccceEEEEEEeCCc-ccCCCCceeeeeeCCcEEEEEEe-----ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEE
Q psy10918 87 ESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNISCEV-----DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA 160 (207)
Q Consensus 87 ~~~~~~l~v~~~~~-~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (207)
...+.|.|..... ..........+.+|..+.+.|.. .+.+++ .+.|+++.. + ... ++... ....|.
T Consensus 109 -~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~-~i~W~k~~~-~--~~~--r~~~~-~~~~L~ 180 (326)
T PHA02785 109 -MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNA-DIIWSGHRR-L--RNK--RLKQR-TPGIIT 180 (326)
T ss_pred -EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCc-eEEEccCCc-c--CCc--ceEec-CCCeEE
Confidence 3456677764332 11111122235688899999962 345665 999987542 1 111 12111 123699
Q ss_pred EecCCCCCCeEEEEEEecCCCCCc
Q psy10918 161 YSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 161 i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
|.+++.+|.|.|+|.|.|..|...
T Consensus 181 i~~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 181 IEDVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred EeecChhhCeEEEEEEEeccCCEE
Confidence 999999999999999999887653
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=139.37 Aligned_cols=180 Identities=19% Similarity=0.333 Sum_probs=143.0
Q ss_pred eeecCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCcccccccc-CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIA-QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+....+..|+.++|.|.- .+.+.+ .+.|.|+|+++...+. ......++.|.|.+++..|+|.|.|.+.|..|..
T Consensus 135 rv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~R 213 (1281)
T KOG4222|consen 135 RVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGER 213 (1281)
T ss_pred ccCcccccccccceeEEeccCCCCCCCC-cceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccc
Confidence 334445666779999999986 456666 8999999999874322 2334677899999999999999999999999998
Q ss_pred ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 87 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
.+....|.|+.+|.+.. .+....+..|..+.+.|.+.|.|.| ++.|.+++..+. ..+..+..+ ...|.|.++..
T Consensus 214 eS~~A~lsv~e~P~f~~-rp~~~~v~~g~~~~f~c~v~GdP~P-~Vrwkk~~~~~P--~~ry~i~~d--~qtl~i~r~tp 287 (1281)
T KOG4222|consen 214 ESIPARLSVQEKPWFWK-RPKDLAVLVGAAAEFDCRVGGDPQP-TVRWKKDDPSLP--RSRYSILDD--TQTLRIDRVTP 287 (1281)
T ss_pred ccccceeeeccCCcccc-ccccceeecccccccccccCCCCCC-ceeeeccCCCCC--ccceeeeec--cccccccccCC
Confidence 88888999999887664 4556667889999999999999998 999999776543 233333333 23488999999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
.|.|.|.|.+.|..|..+.++.++|....
T Consensus 288 ~deg~y~C~a~n~vG~l~asa~ltV~apP 316 (1281)
T KOG4222|consen 288 TDEGTYVCPAENLVGGLEASATLTVQAPP 316 (1281)
T ss_pred CcccceeeeccccccccccccceEEecCc
Confidence 99999999999999999888888777543
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=135.77 Aligned_cols=180 Identities=20% Similarity=0.310 Sum_probs=130.4
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecC-----CCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVN-----RQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~-----~~d~g~Y~C~~~~~~~ 84 (207)
+.+..+.-|+.++|.|.+.+.|.+ +|+|||+|......+ ..++.+..++|.+..+. ..|.|.|+|.+.|..|
T Consensus 38 p~d~vvs~~~patlnc~asG~ppP-ti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g 116 (1281)
T KOG4222|consen 38 PHDLVVSKGEPATLNCKASGDPPP-TIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLG 116 (1281)
T ss_pred chhhhccCCCCceeecCCCCCCCC-ceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccc
Confidence 345566778899999999999888 999999996554432 23455556666555442 2389999999999999
Q ss_pred CCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 85 DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
...++...|.+..-..-....+....+..|+.++|.|.-.. .|.+ .+.|.|+|+.+............++ .|.|.+
T Consensus 117 ~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsn 193 (1281)
T KOG4222|consen 117 EAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKPLDHYDVPIIALISGG--NLLISN 193 (1281)
T ss_pred eeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCC-cceeecCCCccccccceeEEEecCC--cEEEec
Confidence 88777777776654544444555556678999999997764 4666 9999999998764333333333333 288999
Q ss_pred CCCCCCeEEEEEEecCCCCCc-cceEEEEeecc
Q psy10918 164 NSELDYGTLICWGSNKIGHQR-VPCVFHIVSAV 195 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~-~~~~~~v~~~~ 195 (207)
++..|.|.|.|.+.|..|... ..+.+.|.+..
T Consensus 194 vrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P 226 (1281)
T KOG4222|consen 194 VRKSDEGTYACVATNMVGERESIPARLSVQEKP 226 (1281)
T ss_pred cccCCCceeeeeecccccccccccceeeeccCC
Confidence 999999999999999999664 34566666543
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=99.11 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=72.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.|.|++ .+.|++++..+.. ..+..+......+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~~-~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQE-GEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEecC-CCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 34557899999999999999987 9999999987642 223445444556789999999999999999999999998665
Q ss_pred eEEEEeecccCCCC
Q psy10918 187 CVFHIVSAVTFHPP 200 (207)
Q Consensus 187 ~~~~v~~~~~~~~p 200 (207)
+.|.+.++|+||
T Consensus 86 --~~l~V~~~P~pP 97 (98)
T cd05762 86 --VNLTVVDKPDPP 97 (98)
T ss_pred --EEEEEecCCCCC
Confidence 555566778887
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=92.87 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=63.5
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee--c--CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR--S--GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
|+.+.|.|.+.|.|++ .+.|++++..+.....+..+.. . ...+.|.|.++..+|+|.|+|.|.|..|..... +
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~--~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI--I 77 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE--E
Confidence 6789999999999876 9999999876543222222221 1 223679999999999999999999999988655 5
Q ss_pred EEeecccCCCC
Q psy10918 190 HIVSAVTFHPP 200 (207)
Q Consensus 190 ~v~~~~~~~~p 200 (207)
.+.+..+|.+|
T Consensus 78 ~L~V~~~P~~P 88 (88)
T cd05735 78 QLTVQEPPDPP 88 (88)
T ss_pred EEEEeCCCCCC
Confidence 55666788876
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=95.14 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=68.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+....+.+.+|++++|.|.+.+. .+ .+.|++++..+.... ......+.+|.|.+++.+|+|.|.|.+.|..|...
T Consensus 6 ~~~~~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 6 SNNSVGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred cccccCccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 3455566789999999999999998 66 999999998876422 22223456899999999999999999999999887
Q ss_pred cceEEEEE
Q psy10918 88 SNAFFLNV 95 (207)
Q Consensus 88 ~~~~~l~v 95 (207)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 77777766
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=96.64 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=73.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
|...+....+..|+.+.|.|.+.|.|.+ .+.|+|++.++......... ...+.|.|.++...|+|.|+|.+.|..|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~ 81 (98)
T cd05762 3 IIQFPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS 81 (98)
T ss_pred eEECCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc
Confidence 3445677889999999999999999887 99999999998754322222 12457999999999999999999999998
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
. ...+.|.|...|.
T Consensus 82 ~-~~~~~l~V~~~P~ 95 (98)
T cd05762 82 R-QAQVNLTVVDKPD 95 (98)
T ss_pred e-eEEEEEEEecCCC
Confidence 7 4478889887664
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=93.96 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=66.1
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+.+..+.+|+++.|.|.+.|.|.| .++|++++..+... ......+..|.|.+++.+|+|.|.|.+.|..|.. ...
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~ 82 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPAT--AEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQ 82 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCCC--CEEecCCCEEEECcCChhhCEEEEEEEEcCCCce-EEE
Confidence 3566778899999999999999988 99999999877543 2333456789999999999999999999999976 445
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd05851 83 ARVYV 87 (88)
T ss_pred EEEEE
Confidence 55655
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=92.13 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=64.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+..|+.+.|.|.+.|.|.| .+.|++++..+.....+..+......+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 356789999999999999998 9999999887643323344444455678999999999999999999999998765544
Q ss_pred E
Q psy10918 189 F 189 (207)
Q Consensus 189 ~ 189 (207)
+
T Consensus 84 l 84 (86)
T cd05894 84 V 84 (86)
T ss_pred E
Confidence 4
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=89.54 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=57.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+.....+..+..++ ....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 4799999999998 999999988765433344443332 334799999999999999999999999887766654
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=94.62 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=64.8
Q ss_pred CCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEec-------CCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMT-------NQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
....+.+|+++.|.|.+.+ .|.| .+.|+|||.++........... ..+|.|..+..+|+|.|+|.+.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCC-ccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 4567888999999999999 6766 9999999999875332222222 35799999999999999999999998
Q ss_pred CCccceEEEEEE
Q psy10918 85 DGESNAFFLNVM 96 (207)
Q Consensus 85 ~~~~~~~~l~v~ 96 (207)
.. ...+.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 65 556666664
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=91.71 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=62.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ....+... +....|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALALS-DHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECccC-CCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 34567899999999999999987 99999998765432 22233222 34567999999999999999999999998865
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
.+.+
T Consensus 87 ~~~v 90 (92)
T cd05737 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 5443
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=89.25 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=59.6
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+|+++.|.|.+.+.|.| .+.|++++..+.... ......+++|.|.+++..|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCCCC-CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence 58999999999999988 999999998876532 2233456789999999999999999999999876 3355554
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=90.46 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=65.4
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
+....+.+|+++.|.|.+ .+.|.+ .+.|++++..+...........++.|.|.+++.+|+|.|.|.+.|..|...+..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 455677899999999998 677777 999999998877543333333457899999999999999999999998876666
Q ss_pred EEEE
Q psy10918 91 FFLN 94 (207)
Q Consensus 91 ~~l~ 94 (207)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05724 82 ARLS 85 (86)
T ss_pred EEEE
Confidence 6554
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=90.20 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=62.4
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEe-c---CCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIM-T---NQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..+....+..|++++|.|.+.+.|.+..+.|++ ++..+.......... . .++|.|.+++.+|+|.|+|.+.|..+
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 345666788999999999999988533999998 776655422221111 1 25799999999999999999999874
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 33355666654
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-16 Score=91.24 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=61.6
Q ss_pred eeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeec-----CceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRS-----GTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+..|+.+.|.|.+.| .|+| .+.|+|+|..+..... ..+... ...+.|.|..+..+|+|.|+|.|.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~i~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRTLTNKLT-EIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCC-ccEEEeCCeeCCCCcc-eeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 445778999999999999 6665 9999999987653221 111111 1246799999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 182 HQRVPCVFHI 191 (207)
Q Consensus 182 ~~~~~~~~~v 191 (207)
..+..+.+.|
T Consensus 90 ~~~~t~~L~V 99 (101)
T cd04975 90 SKSLTFELYV 99 (101)
T ss_pred cEEEEEEEEE
Confidence 8766655544
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=85.97 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=54.9
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+.|.|+| .+.|+|+|..+.. ......|.|.++..+|+|.|+|.|+|..|..+++..+.|.
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~---------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISG---------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECcc---------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4789999999998 9999999987531 1233469999999999999999999999988777777665
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=90.12 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=67.0
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
...+.+..+..|+++.|.|.+.+.|.+ .+.|++++..+.... .....++.|.|.+++.+|+|.|.|.+.|..|.. .
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~ 78 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLASEN--RIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-Y 78 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECCCCC--eEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-E
Confidence 345677888999999999999999988 999999999876532 344557789999999999999999999998875 3
Q ss_pred ceEEEE
Q psy10918 89 NAFFLN 94 (207)
Q Consensus 89 ~~~~l~ 94 (207)
..+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05728 79 ASAELA 84 (85)
T ss_pred EEEEEE
Confidence 344444
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=87.67 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=57.0
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+.....+..+...+ ....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 4799999999998 999999988764333333343332 334699999999999999999999999887776654
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=94.34 Aligned_cols=119 Identities=23% Similarity=0.304 Sum_probs=81.7
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCc
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNS 139 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~ 139 (207)
+|.|.+++..|+|.|.|.+.+..+.. ...+.|.|..+|.+..... ......|..+.|.|.+.+.++ ++.+.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~-~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLE-KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCC-CceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 58999999999999999998776664 5677899988776543322 222336888999999999744 36999999875
Q ss_pred eeee------cc--ceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 140 AETV------NV--AQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 140 ~~~~------~~--~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.... .. .......++. .+.|.+......+.+.|+|.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 4211 00 0111222333 34566665555667899999988654
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-16 Score=87.51 Aligned_cols=74 Identities=18% Similarity=0.363 Sum_probs=59.9
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
|+++.|.|.+.+.|.| .++|++++.++.... .......++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 6889999999999988 999999998876532 22344556789999999999999999999998876 33555654
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=91.78 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=67.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.......+..|+++.|.|.+.|.|.+ .+.|++++..+....... ....+..|.|.+++.+|+|.|+|.+.|..|.. .
T Consensus 8 ~~~~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~ 85 (95)
T cd05730 8 QSEVNATANLGQSVTLACDADGFPEP-TMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-E 85 (95)
T ss_pred CcccceEEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-E
Confidence 44455667899999999999999988 999999998876542221 22234579999999999999999999999976 5
Q ss_pred ceEEEEEE
Q psy10918 89 NAFFLNVM 96 (207)
Q Consensus 89 ~~~~l~v~ 96 (207)
..+.|.|.
T Consensus 86 ~~~~L~V~ 93 (95)
T cd05730 86 AEIHLKVF 93 (95)
T ss_pred EEEEEEEE
Confidence 56777765
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=89.33 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=60.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEE-cCceeeeccceeEEee-cCceEEEEEecCCCCCCeEEEEEEecCC-CCCccc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTF-NNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKI-GHQRVP 186 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~-g~~~~~ 186 (207)
.+..|+.+.|.|.+.|.|.++.+.|++ ++..+.....+..+.. ++..+.|.|.+++.+|+|.|+|.|.|.. |....+
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 467899999999999998534999998 6654432222222222 2335679999999999999999999997 776666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 55544
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=90.37 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec---CCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+++.|.|.+.+.|.| .+.|++++.++........... ..+|.|.+++.+|+|.|.|.+.|..|.. ..
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 86 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TV 86 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eE
Confidence 34567899999999999999988 9999999988865433233222 2369999999999999999999998876 33
Q ss_pred eEEE
Q psy10918 90 AFFL 93 (207)
Q Consensus 90 ~~~l 93 (207)
.+.|
T Consensus 87 ~~~v 90 (92)
T cd05737 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 4443
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-16 Score=85.92 Aligned_cols=72 Identities=26% Similarity=0.458 Sum_probs=56.6
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.|.|.| .+.|++++..+. ...+..+..++ .|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~-~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLV-NNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecc-cCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 5789999999999987 999999886542 22233333322 499999999999999999999999987776654
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=85.98 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=58.1
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|+.+.|.|.+.|.|.| .+.|+++|..+...........++. .|.|.+++..|+|.|+|.|.|..|....++.+.|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999999998 9999999877542211111222332 5788999999999999999999999887777765
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=88.33 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=62.8
Q ss_pred ecCCCcccCC---CcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCC
Q psy10918 11 SLNPDHIKED---SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 11 ~~~~~~v~~g---~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~ 86 (207)
.+....+.+| +++.|.|.+.+.|.+ .++|++++..+...........++.|.|.++. ..|+|.|.|.+.|..|..
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 3455444444 579999999999988 99999999988643333444556789998865 599999999999999987
Q ss_pred ccceEEE
Q psy10918 87 ESNAFFL 93 (207)
Q Consensus 87 ~~~~~~l 93 (207)
.+..+.|
T Consensus 86 ~s~~a~l 92 (94)
T cd05850 86 VSREANL 92 (94)
T ss_pred EEEEEEE
Confidence 6655544
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.6e-16 Score=85.67 Aligned_cols=72 Identities=26% Similarity=0.441 Sum_probs=58.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|+++.|.|.+.+.|.+ .+.|+|++..+.... ......+++|.|.+++.+|+|.|.|.+.|..|...+ ...|.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~~~~-r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLVNNS-RISIWDDGSLEILNITKLDEGSYTCFAENNRGKANS-TGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecccCC-CEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeE-EEEEE
Confidence 6789999999999988 999999998765432 233345678999999999999999999999987733 44454
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=87.48 Aligned_cols=79 Identities=18% Similarity=0.411 Sum_probs=62.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-------CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-------NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
|+.+.|.|.+.+.|++ .+.|++++..+........... .++|.|.++...|+|.|+|.+.|..|.. ...+.
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEE
Confidence 7889999999999877 9999999987754322211111 1469999999999999999999999987 55778
Q ss_pred EEEEeCCc
Q psy10918 93 LNVMYSPT 100 (207)
Q Consensus 93 l~v~~~~~ 100 (207)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 88887664
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=90.24 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=63.6
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--------ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--------MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
...+..|+.+.|.|.+.++|.| .+.|+|++.++......... ....+|.|.+++.+|+|.|+|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 4566778999999999999998 99999999998754322111 11357999999999999999999999886
Q ss_pred CccceEEEEEE
Q psy10918 86 GESNAFFLNVM 96 (207)
Q Consensus 86 ~~~~~~~l~v~ 96 (207)
. +.++.|.|.
T Consensus 91 ~-~~t~~l~V~ 100 (101)
T cd05859 91 K-SYTFALQIQ 100 (101)
T ss_pred E-EEEEEEEEE
Confidence 5 446666654
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=85.54 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=57.4
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|+.+.|.|.+.|.|.| .+.|+++|..+............ ...|.|.+++.+|+|.|.|.|.|..|.....+.+.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999988 99999998765432211122222 225899999999999999999999998877766655
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=85.24 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=56.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+.....+..+... .....|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 4799999999998 99999998776533333333333 2344699999999999999999999999887665554
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=86.16 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=57.1
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+|+.+.|.|.+.|.|.| .+.|++++..+.... ....... ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~~~-~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSVDR-RHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCCCC-CeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 47899999999999998 999999987654321 1122222 3599999999999999999999999887665554
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=88.33 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=59.3
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+|+.+.|.|.+.|.|.+ .++|++++..+...........++.|.|.++. ..|+|.|.|.+.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 47889999999999988 99999999988643333444456789999875 6999999999999998776655543
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=87.50 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=61.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ..+...+ ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~~---~~~~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 82 (88)
T cd05851 9 KDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPAT---AEISMSG--AVLKIFNIQPEDEGTYECEAENIKGKDKHQ 82 (88)
T ss_pred ccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCCC---CEEecCC--CEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence 34457799999999999999998 99999988654321 1222222 358999999999999999999999988766
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 83 ~~l~V 87 (88)
T cd05851 83 ARVYV 87 (88)
T ss_pred EEEEE
Confidence 55543
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=88.21 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=63.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.+.|.|.+.|.|.| .+.|++++..+..... ........+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 14 TANLGQSVTLACDADGFPEP-TMTWTKDGEPIESGEE--KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCCCC--EEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 46789999999999999987 9999999876543211 22222233469999999999999999999999988777777
Q ss_pred EEee
Q psy10918 190 HIVS 193 (207)
Q Consensus 190 ~v~~ 193 (207)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 6653
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=86.95 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=60.0
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.+.|.|.+.|.|.| .+.|++++..+.................|.|.++..+|+|.|+|.|.|..|....++.+
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 46689999999999999887 99999998775432211111112233458899999999999999999999988766555
Q ss_pred E
Q psy10918 190 H 190 (207)
Q Consensus 190 ~ 190 (207)
.
T Consensus 84 ~ 84 (85)
T cd05857 84 D 84 (85)
T ss_pred E
Confidence 4
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=85.89 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=59.4
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCcccccccc-CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
|+++.|.|.+.+.|.| .+.|++++.++..... ......+..|.|.+++..|+|.|.|.+.|..|.. ...+.|+|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 6789999999999988 9999999998864221 1223455689999999999999999999999877 44566665
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=89.69 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-----cCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-----SGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+..|+.+.|.|.+.|.|+| .+.|+|+|..+........... ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 356788999999999999998 9999999987653221111101 1123579999999999999999999999988
Q ss_pred ccceEEEEe
Q psy10918 184 RVPCVFHIV 192 (207)
Q Consensus 184 ~~~~~~~v~ 192 (207)
+.++.+.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 766666553
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=87.12 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=61.9
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.+.|.|.+.+.|.| .+.|++++..+............+....|.|.+++.+|+|.|+|.|.|.+|....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 344567899999999999999887 9999999876543221111122333456999999999999999999999998865
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
++.+
T Consensus 87 ~~~v 90 (92)
T cd05891 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 5443
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=86.04 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=62.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.|.|.| .+.|++++..+.... ............|.|.++..+|.|.|+|.|.|..|....++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTR-TDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccCCc-cEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 3447799999999999999997 999999987643211 11122233456799999999999999999999999886665
Q ss_pred EEE
Q psy10918 188 VFH 190 (207)
Q Consensus 188 ~~~ 190 (207)
.|.
T Consensus 87 ~L~ 89 (90)
T cd04972 87 QVT 89 (90)
T ss_pred EEe
Confidence 554
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=87.72 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=61.8
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc-CCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-QGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
...+.+|+.+.|.|.+.|.|.| .+.|++++.++..... ..... ....|.|.++..+|+|.|.|.+.|..|.. ...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HAS 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEE
Confidence 3457889999999999999988 9999999998865322 11211 23579999999999999999999999976 445
Q ss_pred EEEE
Q psy10918 91 FFLN 94 (207)
Q Consensus 91 ~~l~ 94 (207)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05894 82 LFVK 85 (86)
T ss_pred EEEE
Confidence 5554
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=84.94 Aligned_cols=70 Identities=31% Similarity=0.582 Sum_probs=53.9
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC-CeEecC-C--eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTN-Q--SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~-~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+.|.|.+.|.|.| .+.|+|++..+...... .+...+ + +|.|.+++.+|+|.|.|.+.|..|.... ...|.
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC-HARLD 74 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE-EEEEe
Confidence 5799999999998 99999999988743222 222222 2 6999999999999999999999987633 44554
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-15 Score=83.43 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=57.6
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
.+.|.|.+.|.|.| .+.|++++..+.. .....+........|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLKL-SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcCC-CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 36899999999998 9999999887532 2233444445567899999999999999999999999886665443
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=86.96 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=64.4
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... ....+..|.|.+++.+|+|.|.|.+.|..|.. ...
T Consensus 7 ~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~ 82 (88)
T cd04968 7 FPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPSSAE--ISMSGAVLKIPNIQFEDEGTYECEAENIKGKD-THQ 82 (88)
T ss_pred CCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCCccE--EEEeCCEEEECCCCcccCEEEEEEEEECCCcE-EEE
Confidence 3466678899999999999999988 9999998876554221 22456789999999999999999999999876 445
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
..|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 55654
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-15 Score=86.16 Aligned_cols=84 Identities=17% Similarity=0.392 Sum_probs=63.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+....+......+ ..|.|.++..+|+|.|+|.+.|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 3466778899999999999999874 8999984 5555443222222222 279999999999999999999999877
Q ss_pred ccceEEEEE
Q psy10918 87 ESNAFFLNV 95 (207)
Q Consensus 87 ~~~~~~l~v 95 (207)
....+.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 666666654
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-15 Score=87.67 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=63.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc----ccCCeEecCCeEEEEe-----cCCCCCeeeEEEEe
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQR-----VNRQSAGNYTCVGF 80 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~~~~l~i~~-----~~~~d~g~Y~C~~~ 80 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ........++.+.+.. ++.+|+|.|+|.+.
T Consensus 6 ~~p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~ 84 (100)
T cd07693 6 EHPSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAH 84 (100)
T ss_pred ecCceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence 44667788999999999999999988 99999999887651 1122223333333222 26899999999999
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
|..|...+..+.|.|
T Consensus 85 N~~G~~~s~~~~l~v 99 (100)
T cd07693 85 NSLGEAVSRNASLEV 99 (100)
T ss_pred ccccceecceEEEEe
Confidence 999986677777665
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=84.59 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=53.8
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+.|.|.+.|.|.| .+.|++++..........++........|.|.+++.+|+|.|.|.|.|..|..+..+.+.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4789999999998 9999998764221111112222222236899999999999999999999998877766655
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=86.57 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=59.3
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe--ecC--ceEEEEEecCC-CCCCeEEEEEEecCCCCCccce
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL--RSG--TLSVVAYSPNS-ELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~--~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
.|..+.|.|.+.|.|++ .+.|++++..+.....+.... ..+ ..+.|.|.++. .+|.|.|+|.|.|..|.....
T Consensus 22 ~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~- 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRV-QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD- 99 (109)
T ss_pred CCCEEEEEEECcccCCC-EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE-
Confidence 56789999999999987 999999987654322222111 111 13579999987 589999999999999998555
Q ss_pred EEEEeecccC
Q psy10918 188 VFHIVSAVTF 197 (207)
Q Consensus 188 ~~~v~~~~~~ 197 (207)
+.+.+..+|
T Consensus 100 -i~L~~~~~p 108 (109)
T cd05773 100 -IQLVSTSRP 108 (109)
T ss_pred -EEEEecCCC
Confidence 555555555
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=87.22 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=65.7
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEec-----CCCCCeeeEEEEeee-
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRV-----NRQSAGNYTCVGFNI- 82 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~g~Y~C~~~~~- 82 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+...... .....++++.|.++ +..|.|.|.|.+.|.
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~ 82 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDS 82 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCc
Confidence 34566778899999999999999877 99999999988753321 23344566777776 578999999999999
Q ss_pred CCCCccceEEEEE
Q psy10918 83 EGDGESNAFFLNV 95 (207)
Q Consensus 83 ~~~~~~~~~~l~v 95 (207)
.|...++.+.|.|
T Consensus 83 ~G~~~s~~~~l~v 95 (95)
T cd05722 83 LGSIVSRTARLTV 95 (95)
T ss_pred cCcEEEeeeEEeC
Confidence 8877676666653
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=83.73 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=56.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|++++|.|.+.+.+.+..+.|++|+..+.. .+..|.|.++ .+|+|.|+|.+.+. ..+..+
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v 74 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPV 74 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC---cCCCCE
Confidence 66677899999999999988776547999999987632 3567999999 99999999999864 334455
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|+|
T Consensus 75 ~l~V 78 (78)
T cd05752 75 HLEV 78 (78)
T ss_pred EEeC
Confidence 5543
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=84.98 Aligned_cols=70 Identities=29% Similarity=0.462 Sum_probs=53.7
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEe-cC-C--eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TN-Q--SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~-~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|.|.|.+.|.|.| .+.|+|++.++.......... .+ + .|.|.+++.+|+|.|+|.+.|..|.. +....|.
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD 74 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence 5799999999998 999999998886532222221 22 1 59999999999999999999999877 3355554
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=84.18 Aligned_cols=74 Identities=20% Similarity=0.389 Sum_probs=59.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
|+++.|.|.+.+.|.| .+.|++++..+...... .....+..|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 7889999999999988 99999999887653322 233446789999999999999999999998876 44556655
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=86.17 Aligned_cols=78 Identities=26% Similarity=0.443 Sum_probs=60.7
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
.+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... .......+|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence 46789999999999999887 99999999888653321 112234569999999999999999999999876 44555
Q ss_pred EEE
Q psy10918 93 LNV 95 (207)
Q Consensus 93 l~v 95 (207)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 543
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=84.90 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+....+..|+.+.|.|.+.+.|.| .+.|++++..+.. ..+..+......+.|.|.++..+|+|.|.|.|.|..|...
T Consensus 9 ~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 86 (92)
T cd05747 9 KPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVS-SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQE 86 (92)
T ss_pred cCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECCC-CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEe
Confidence 3445667899999999999999997 9999999876432 2233344444456799999999999999999999999875
Q ss_pred cce
Q psy10918 185 VPC 187 (207)
Q Consensus 185 ~~~ 187 (207)
.+.
T Consensus 87 ~~~ 89 (92)
T cd05747 87 AQF 89 (92)
T ss_pred EEE
Confidence 543
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=83.91 Aligned_cols=70 Identities=14% Similarity=0.294 Sum_probs=57.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.+..+.+|+.+.|.|.+.+. .+ .+.|+|+|.++.... .....+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~~~--~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGENN--RTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCCCc--eEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 34567889999999999886 34 899999999887533 334456789999999999999999999887764
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=85.43 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=59.5
Q ss_pred CcEEEEeEeccCCCC-cEEEEEECCccccccc-cCCe-E----ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 21 SDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNI-AQGI-I----MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~-~~i~W~~~~~~~~~~~-~~~~-~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+++.|.|.+.+.|.+ ..+.|++++.++.... .... . ...++|.|.+++..|+|.|+|.+.|..|.. ...+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence 468999999998876 3689999998875421 1111 1 134689999999999999999999999877 557788
Q ss_pred EEEeCC
Q psy10918 94 NVMYSP 99 (207)
Q Consensus 94 ~v~~~~ 99 (207)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 887654
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=85.84 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=60.3
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec----cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN----VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+.+|+.+.|.|.+.|.|.| .+.|+++. ..+... ..+..+........|.|.+++.+|+|.|.|.|.|..|
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 3456789999999999999987 99999953 222110 1122232223345799999999999999999999999
Q ss_pred CCccceEEE
Q psy10918 182 HQRVPCVFH 190 (207)
Q Consensus 182 ~~~~~~~~~ 190 (207)
....++.|.
T Consensus 89 ~~~~~~~l~ 97 (98)
T cd05870 89 GHQKSMYLD 97 (98)
T ss_pred cceeEEEEe
Confidence 887766554
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-15 Score=87.08 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=62.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe--EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
+++..+.+|+.+.|.|.+.|.|.| .+.|++++..+........ ......|.|.+++.+|.|.|.|.+.|..|.. ..
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~ 84 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NV 84 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eE
Confidence 455668899999999999999988 9999999987754322111 1223479999999999999999999999876 33
Q ss_pred eEEEE
Q psy10918 90 AFFLN 94 (207)
Q Consensus 90 ~~~l~ 94 (207)
.+.|.
T Consensus 85 ~~~L~ 89 (90)
T cd04972 85 SVQVT 89 (90)
T ss_pred EEEEe
Confidence 55554
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=83.49 Aligned_cols=78 Identities=12% Similarity=0.313 Sum_probs=57.7
Q ss_pred CcEEEEEEeccCCCC-ceEEEEEcCceeeecccee---EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 115 EKVNISCEVDANPPD-VKFSWTFNNSAETVNVAQA---HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 115 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.+.|.|.+.|.|.| +.+.|++++..+....... .+........|.|.+++..|+|.|+|.|.|..|..++++.+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 368999999999875 4789999987654322111 122223345799999999999999999999999887776665
Q ss_pred Ee
Q psy10918 191 IV 192 (207)
Q Consensus 191 v~ 192 (207)
|.
T Consensus 81 V~ 82 (85)
T cd05854 81 VR 82 (85)
T ss_pred EE
Confidence 54
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=84.35 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|+.+.|.|.+.|.|.| .+.|++++..+......... ......|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRR--RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceE--EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999999988 99999998765432211111 122346899999999999999999999998877766655
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=85.65 Aligned_cols=80 Identities=16% Similarity=0.348 Sum_probs=59.8
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc----ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV----AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....|+.+.|.|.+.|.|.| .+.|++++..+.... .+..+......+.|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 13 ~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 13 AMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 34457999999999999987 999999876542211 1122223334467999999999999999999999998876
Q ss_pred ceEEE
Q psy10918 186 PCVFH 190 (207)
Q Consensus 186 ~~~~~ 190 (207)
++.|.
T Consensus 92 ~~~l~ 96 (97)
T cd05869 92 SMYLE 96 (97)
T ss_pred EEEEE
Confidence 65544
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=84.12 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=60.5
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+.+..+.+|+++.|.|.+.|.|.|..|.|++++.++... .....+.|.|..+ .|+|.|.|.+.|..|...++
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 34667788999999999999999987469999999887541 1123457888876 57899999999999977655
Q ss_pred eEEE
Q psy10918 90 AFFL 93 (207)
Q Consensus 90 ~~~l 93 (207)
...|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 5443
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-15 Score=85.56 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=60.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++....... ... .....|.|.+++.+|+|.|.|.|.|..|....+
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~---~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPSSA---EIS--MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCCcc---EEE--EeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 33456789999999999999987 999999876532211 111 122369999999999999999999999988666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 55544
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=81.50 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=53.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.+.|.| .+.|+|||.++... ..+..|.|.++..+|+|.|+|.+.|..|.. .+.+.+++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 4799999999998 99999999988632 235689999999999999999999998865 44555554
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=85.56 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=61.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc----ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV----AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
..+.+|+.+.|.|.+.+.|.| .+.|++++..+.... .+..+......+.|.|.+++.+|+|.|.|.|.|..|..+
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 456789999999999999887 999999875432111 112222333456799999999999999999999999887
Q ss_pred cceEEE
Q psy10918 185 VPCVFH 190 (207)
Q Consensus 185 ~~~~~~ 190 (207)
.++.+.
T Consensus 90 ~s~~l~ 95 (96)
T cd05732 90 QSMYLE 95 (96)
T ss_pred EEEEEe
Confidence 665554
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=82.14 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=54.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
++|.|.+.|.|.| .+.|+++|..+........+. .....|.|.++..+|+|.|.|.|.|..|....+..+.|.+
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4799999999987 999999987653322222222 2223689999999999999999999999775555555543
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=84.64 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=59.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeec-----cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVN-----VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
|+.+.|.|.+.+.|.| .+.|++++...... ....++.... ...|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TGDLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECC-CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 6789999999999987 99999987643110 0111222211 125999999999999999999999999877777
Q ss_pred EEEeeccc
Q psy10918 189 FHIVSAVT 196 (207)
Q Consensus 189 ~~v~~~~~ 196 (207)
|.|.....
T Consensus 79 l~V~~~~~ 86 (90)
T cd05726 79 LEVTDVIA 86 (90)
T ss_pred EEEeeccc
Confidence 77665433
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=82.57 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.|.|.| .+.|++++..+.. ..+..+...+....|.|.+++.+|+|.|.|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVPD-SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECCC-CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 6789999999999987 9999998765432 2233344445556799999999999999999999999775554443
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=85.01 Aligned_cols=84 Identities=19% Similarity=0.413 Sum_probs=61.2
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecC---CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
...+....+..|+++.|.|.+.+.| + .+.|++ ++..+...........+ .+|.|.+++.+|+|.|.|.+.|..|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 3446667889999999999999885 4 899998 55554432222222211 3799999999999999999999877
Q ss_pred CCccceEEEE
Q psy10918 85 DGESNAFFLN 94 (207)
Q Consensus 85 ~~~~~~~~l~ 94 (207)
.....++.|+
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 6555566554
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=81.10 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=53.6
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
.+.|.|.+.|.|.| .+.|++++..+.. .....+...+. |.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~~-~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVIP-SDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECCC-CCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 36899999999998 9999999876432 22233333333 67779999999999999999999887665553
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=83.15 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=59.0
Q ss_pred CcEEEEeEecc--CCCCcEEEEEECCccccc-cccCCeEe-----cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 21 SDVYFDCDIVA--VPPVYKVEWRHNNKTLHH-NIAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 21 ~~v~l~C~~~~--~~~~~~i~W~~~~~~~~~-~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
+++.|.|.+.. ...+ .+.|++||.++.. .....+.. ..+.|.|.+++..|+|.|+|.+.|..+.. +.+..
T Consensus 1 ~~~~l~C~v~~d~~l~~-~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDI-VFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCc-EEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEE
Confidence 46899999976 3455 8999999999863 22222222 34679999999999999999999998877 55777
Q ss_pred EEEEeCC
Q psy10918 93 LNVMYSP 99 (207)
Q Consensus 93 l~v~~~~ 99 (207)
|.|..+|
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 8888665
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=85.75 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=61.6
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec--CCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+........... ...|.|.+++..|+|.|.|.+.|..|..
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 34567888999999999999999988 9999999988765332222221 3579999999999999999999998865
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=84.76 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcC----ceeeecc-ceeEEee-------cCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNN----SAETVNV-AQAHILR-------SGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~----~~~~~~~-~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|+.+.|.|.+.|.|.| +|.|++++ ..+.... ....... .+....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 5789999999999998 99999963 2211111 1111111 12334689999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 182 HQRVPCVFHI 191 (207)
Q Consensus 182 ~~~~~~~~~v 191 (207)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9988877765
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=81.81 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=55.7
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
+.|.|.+.|.|.| .+.|++++..+... .... . ...|.|.++..+|+|.|+|.|.|..|......++.|++
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~---~~~~-~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLN---HTFK-R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC---CEEc-c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 3689999999998 99999999875422 1221 1 23589999999999999999999999887777777653
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-15 Score=82.29 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=57.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|+++.|.|.+.+.|.+ .+.|++++..+..... .....+++|.|.+++.+|.|.|.|.+.|..|.. ...+.|.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLTNSSR-ICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEcccCCC-EEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence 6789999999999887 9999999988765332 223445789999999999999999999998876 3355454
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=82.81 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=57.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
++|.|.+.|.|.| .+.|++++.++.... .......++.|.|.+++.+|+|.|.|.+.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 3789999999988 999999998776322 22233446689999999999999999999999987666666665
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=83.47 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=56.1
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+..|+.+.|.|.+.|.|. .+.|++++........+..+..++..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 10 VELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred eEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 35678999999999999774 89999854332222233444455656789999999999999999999999875
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=81.02 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=55.2
Q ss_pred cEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 22 ~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
++.|.|.+.|.|.| .++|++++..+..... ......+.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 47899999999988 9999999987765332 223345679999999999999999999999876 3355554
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-15 Score=81.69 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=55.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.+.|.+ .+.|+|++.++... ......+.+|.|.+++.+|+|.|+|.+.|..|.. ...+.+.+
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC--CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 4789999999988 99999999988764 2344556789999999999999999999988764 33444443
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=82.02 Aligned_cols=73 Identities=22% Similarity=0.428 Sum_probs=56.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc-cceEEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE-SNAFFLNVM 96 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~~l~v~ 96 (207)
++|.|.+.+.|.| .+.|+|+|.++...... ......+.|.|.+++.+|+|.|.|.+.|..|... +..+.|.|.
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999988 99999999987653322 2223346899999999999999999999988653 345555553
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=85.32 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=58.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC---CeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..+............ .+|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 455678899999999999998887 89999999877653322222222 369999999999999999999988866
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=86.07 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=60.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc---CCeEe----cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA---QGIIM----TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+..|+++.|.|.+.|.|.| .++|++++..+..... ..... ..+.|.|.+++.+|+|.|.|.+.|..|
T Consensus 9 ~~~~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 87 (97)
T cd05869 9 ENQTAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIG 87 (97)
T ss_pred cCceEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCC
Confidence 344444558999999999999988 9999998876643211 11111 124699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.. ...+.|.|
T Consensus 88 ~~-~~~~~l~v 97 (97)
T cd05869 88 QD-SQSMYLEV 97 (97)
T ss_pred Ce-eEEEEEEC
Confidence 77 44555543
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=84.57 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=59.0
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec----cceeEEeecCceEEEEEec--CCCCCCeEEEEEEecC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN----VAQAHILRSGTLSVVAYSP--NSELDYGTLICWGSNK 179 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~--~~~~~~g~y~C~~~n~ 179 (207)
+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+... ........++....+.+.. ...+|+|.|+|.|.|.
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~ 86 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNS 86 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcc
Confidence 344567789999999999999987 99999998775431 1112223344433444432 3688999999999999
Q ss_pred CCC-CccceEEEE
Q psy10918 180 IGH-QRVPCVFHI 191 (207)
Q Consensus 180 ~g~-~~~~~~~~v 191 (207)
.|. .++.+.+.|
T Consensus 87 ~G~~~s~~~~l~v 99 (100)
T cd07693 87 LGEAVSRNASLEV 99 (100)
T ss_pred ccceecceEEEEe
Confidence 998 555555543
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-15 Score=85.90 Aligned_cols=86 Identities=29% Similarity=0.539 Sum_probs=67.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
|...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... ...+|.|.+++.+|+|.|+|.+.|..|.
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~ 81 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE 81 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCC-cccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE
Confidence 4456788889999999999999998877 999999999888643333332 2356999999999999999999988665
Q ss_pred CccceEEEEE
Q psy10918 86 GESNAFFLNV 95 (207)
Q Consensus 86 ~~~~~~~l~v 95 (207)
. ...+.|.|
T Consensus 82 ~-~~~~~l~V 90 (90)
T PF07679_consen 82 A-TASVNLTV 90 (90)
T ss_dssp E-EEEEEEEE
T ss_pred E-EEEEEEEC
Confidence 5 33455543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=83.91 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=66.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+...+..+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~ 85 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTS-SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATAS 85 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEES-SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCC-cccccccccceee-eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEE
Confidence 44567899999999999999887 9999999877654 334555556678889999999999999999999998887666
Q ss_pred eEEE
Q psy10918 187 CVFH 190 (207)
Q Consensus 187 ~~~~ 190 (207)
+.+.
T Consensus 86 ~~l~ 89 (90)
T PF07679_consen 86 VNLT 89 (90)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=83.89 Aligned_cols=72 Identities=28% Similarity=0.421 Sum_probs=57.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
|..+.|.|.+.|.|.+ .++|++++..+.... ......++.|.|.++. .+|+|.|.|.+.|..|...++.++|
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~~~-~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLDIDLTN-DRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEEccCCC-CeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 4479999999999988 999999998875322 2344557889999885 6899999999999999876665554
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=81.26 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=55.0
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+.|.|+| .+.|+++|..+... .+.... ...|.|.++..+|+|.|+|.|.|..|....+..+.++
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~---~~~~~~--~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK---NRTKKS--GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC---CEEEcC--CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999999998 99999998775432 122222 2469999999999999999999999987777766665
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=82.13 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=57.0
Q ss_pred CcEEEEEEeccCC-CCceEEEEEcCceeeeccceeEEeec---CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 115 EKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRS---GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 115 ~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+++.|.|.+.+.+ .++.|.|+++|..+.......++... .....|.|.+++..|+|.|+|.|+|..+..+.++.+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 3689999998744 23599999999887533222222221 1233699999999999999999999999887776665
Q ss_pred Ee
Q psy10918 191 IV 192 (207)
Q Consensus 191 v~ 192 (207)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 54
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=81.20 Aligned_cols=70 Identities=31% Similarity=0.507 Sum_probs=53.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeE-ecC---CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-MTN---QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+.|.|.+.|.|.| .+.|+|++..+......... ..+ .+|.|.+++.+|+|.|+|.+.|..|.. .....|.
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 4799999999998 99999999888743222211 121 159999999999999999999999876 3345554
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=80.58 Aligned_cols=70 Identities=24% Similarity=0.475 Sum_probs=55.6
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.|.|.| .+.|++++..+.... ......+.+|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 4789999999998 999999988775432 2233456789999999999999999999999876 44555554
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=83.87 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=58.2
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
...|+++.|.|.+.+.|.+ .+.|++++..+..............|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 6 ~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~ 81 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVD 81 (82)
T ss_pred ccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEe
Confidence 4569999999999998887 89999999877543222222223579999999999999999999988865 4344443
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=82.46 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=59.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccc------cccCCeE-ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHH------NIAQGII-MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~------~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
|+++.|.|.+.+.|.+ .+.|++++..+.. ....++. ..++.|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEE
Confidence 6789999999999888 9999998864310 0111222 335689999999999999999999999976 45677
Q ss_pred EEEEeC
Q psy10918 93 LNVMYS 98 (207)
Q Consensus 93 l~v~~~ 98 (207)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 887743
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=79.80 Aligned_cols=73 Identities=15% Similarity=0.361 Sum_probs=53.4
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.+.|.| .+.|++++............... ..|.|..+..+|+|.|+|.|.|..|..+..+.+.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 6789999999999887 99999854433222222222222 2488889999999999999999999876655443
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=82.54 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=56.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcC----ceeeecc-ceeEEee-------cCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNN----SAETVNV-AQAHILR-------SGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~----~~~~~~~-~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|+.+.|.|.+.+.|.| .+.|++++ ..+.... ....... ....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6789999999999998 99999843 2221111 1111111 12235799999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 182 HQRVPCVFHI 191 (207)
Q Consensus 182 ~~~~~~~~~v 191 (207)
....++.+.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888877766
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=82.81 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=59.0
Q ss_pred CcEEEEeEeccCCCC-cEEEEEECCcccccccc-C-----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 21 SDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNIA-Q-----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~-~~i~W~~~~~~~~~~~~-~-----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+++.|.|.+.+.|.+ ..+.|++++..+..... . ......+.|.|.+++..|+|.|.|.+.|..|.. .....|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence 468999999988765 25789999988753211 1 111235689999999999999999999988876 557778
Q ss_pred EEEeCC
Q psy10918 94 NVMYSP 99 (207)
Q Consensus 94 ~v~~~~ 99 (207)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 887654
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=80.30 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=55.7
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.+.|.| .+.|++++..+.. .....+..++ .|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~-~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLTN-SSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEccc-CCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 6789999999999987 9999999876432 1222222222 489999999999999999999999887665554
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=81.42 Aligned_cols=81 Identities=11% Similarity=0.219 Sum_probs=57.4
Q ss_pred CcEEEEEEeccCCCC-ceEEEEEcCceeeecccee---EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 115 EKVNISCEVDANPPD-VKFSWTFNNSAETVNVAQA---HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 115 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.+.|.|.+.+.|.+ ..+.|+++|..+....... ..........|.|.+++..|+|.|+|.|.|..|..+.++.+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 368999999998864 3679999988764332211 111122344699999999999999999999999886665544
Q ss_pred EeecccC
Q psy10918 191 IVSAVTF 197 (207)
Q Consensus 191 v~~~~~~ 197 (207)
+.++|
T Consensus 81 --V~~pP 85 (85)
T cd04970 81 --VRGPP 85 (85)
T ss_pred --EECCC
Confidence 44443
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=84.40 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=59.9
Q ss_pred CCcccCCCcEEEEeEecc-----CCCCcEEEEEECCcccccc--ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVA-----VPPVYKVEWRHNNKTLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~-----~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+.+|+.+.|.|.+.+ .|.+ .+.|||++..+... ...++...+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 456778999999999988 5666 89999998764321 223344456789999999999999999999988765
Q ss_pred ccceEEEE
Q psy10918 87 ESNAFFLN 94 (207)
Q Consensus 87 ~~~~~~l~ 94 (207)
...+.|.
T Consensus 87 -~~~~~L~ 93 (94)
T cd05756 87 -KVSISLT 93 (94)
T ss_pred -EEEEEEE
Confidence 3344444
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-14 Score=83.20 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=60.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Cccccccc---cCCeEe----cCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLHHNI---AQGIIM----TNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~~~~---~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+.+..+.+|++++|.|.+.+.|.| .+.|+++ +..+.... ..++.. ...+|.|.+++.+|+|.|.|.+.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 86 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASR 86 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEecc
Confidence 566788999999999999999988 9999994 33332110 112221 1247999999999999999999999
Q ss_pred CCCCccceEEEEE
Q psy10918 83 EGDGESNAFFLNV 95 (207)
Q Consensus 83 ~~~~~~~~~~l~v 95 (207)
.|.. ...+.|+|
T Consensus 87 ~G~~-~~~~~l~~ 98 (98)
T cd05870 87 IGGH-QKSMYLDI 98 (98)
T ss_pred CCcc-eeEEEEeC
Confidence 9976 44665553
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=79.02 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=50.9
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|.|.+.|.|.| .+.|+|++.++.... ....+..|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~~---~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~ 60 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLNH---TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE 60 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCCC---EEccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence 4689999999998 999999999886532 22345679999999999999999999999866
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=79.70 Aligned_cols=72 Identities=17% Similarity=0.426 Sum_probs=55.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|+.+.|.|.+.+.|.+ .+.|++ ++..+... .......+++|.|.++..+|.|.|.|.+.|..|.. +..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence 6889999999999887 999997 55554432 22333456789999999999999999999998865 4455444
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=79.60 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=52.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+... ..... .....|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~--~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPN--RTKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT 69 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCC--ceeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence 4789999999998 99999988754321 11121 2234699999999999999999999999876665443
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=84.28 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=61.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc---CCeEe----cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA---QGIIM----TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+..... .++.. ....|.|.+++.+|+|.|.|.+.|..|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 86 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIG 86 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence 445678899999999999999887 9999999866553211 11111 124799999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 85 DGESNAFFLN 94 (207)
Q Consensus 85 ~~~~~~~~l~ 94 (207)
.. ..++.|.
T Consensus 87 ~~-~~s~~l~ 95 (96)
T cd05732 87 GD-QQSMYLE 95 (96)
T ss_pred Cc-EEEEEEe
Confidence 86 5465554
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=82.67 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=54.3
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECC----ccccccccCC-----------eEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNN----KTLHHNIAQG-----------IIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~----~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
|+++.|.|.+.+.|.| .|+|+|++ ..+....... .......|.|.+++.+|+|.|.|.+.|..|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999999988 99999964 2221111110 001234699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.. ..++.|.|
T Consensus 80 ~~-~~sa~L~V 89 (90)
T cd04974 80 PS-HHSAWLTV 89 (90)
T ss_pred cc-cCCEEEEe
Confidence 87 44666766
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-14 Score=81.16 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=60.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.|.|.| .+.|++++..+... . .+.... ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~~~-~--~~~~~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLASE-N--RIEVEA--GDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECCCC-C--eEEEeC--CEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 34457789999999999999987 99999998865321 1 122222 258899999999999999999999987666
Q ss_pred eEEE
Q psy10918 187 CVFH 190 (207)
Q Consensus 187 ~~~~ 190 (207)
+.+.
T Consensus 81 ~~l~ 84 (85)
T cd05728 81 AELA 84 (85)
T ss_pred EEEE
Confidence 5543
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=80.89 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=55.3
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
...+.+|+.+.|.|.+.|. .| .+.|++++..+.. ....+. .....|.|.+++.+|+|.|.|.|.|..|...
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVP--PRLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCC--CCEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 3457789999999999999 76 9999999876432 222222 2233699999999999999999999999753
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=79.28 Aligned_cols=71 Identities=18% Similarity=0.388 Sum_probs=53.0
Q ss_pred EEEEeEeccCCCCcEEEEEECCcccc-ccccCC--eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLH-HNIAQG--IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~-~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.|.|.| .+.|++++.... .....+ ....+..|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 3689999999998 999999986432 211112 22345689999999999999999999998875 44566665
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=78.25 Aligned_cols=68 Identities=28% Similarity=0.507 Sum_probs=53.2
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
++|.|.+.+.|.+ .+.|++++..+... ......+..|.|.+++.+|+|.|.|.+.|..|.. .....|.
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELPKG--RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCCCC--cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 4799999999988 99999998766542 2223356789999999999999999999998876 3344444
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=78.30 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCceEEEEEcCceeeeccce-eEEee---cCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILR---SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 118 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.|.+.|.|.| ++.|+++|..+...... ..+.. ......|.|.++..+|+|.|+|.|+|..|...+...+
T Consensus 2 ~i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 2 CIPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred eEEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 478999999998 99999999876432211 11111 1224579999999999999999999999988666443
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-14 Score=79.12 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=55.0
Q ss_pred cEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 22 ~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
.+.|.|.+.|.|.| .+.|++++..+.......+.. ....|.|.++...|+|.|+|.+.|..|.. +..+.|.
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence 37899999999998 999999999885433222222 23569999999999999999999998875 4455444
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=79.21 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=51.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
|.|.|.+.+.|.| .+.|++++..+.... ......++.|.|.+++.+|+|.|.|.+.|..|..
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVTESG-KFHISPEGYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECCCCC-CEEECCCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence 4799999999988 899999998876432 2223346789999999999999999999998876
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=77.88 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=51.9
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|+| .+.|++++..+. ........ ...|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~--~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELP--KGRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCC--CCcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 4799999999987 999999876542 22222322 22599999999999999999999999876665543
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=78.40 Aligned_cols=70 Identities=21% Similarity=0.453 Sum_probs=52.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCC----CCCeeeEEEEeeeCCCCccceEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNR----QSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+.|.|.+.|.|.| +++|++++.++......... ..+++|.|..+.. .|+|.|.|.+.|..|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 4789999999988 99999999887432222222 3467888887764 378999999999998776655443
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-14 Score=79.79 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=59.2
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
....+.+|++++|.|.+.......++.|++++..+.. ...+..|.|.+++.+|+|.|+|.+.+..+...+..+.
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~ 80 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVS 80 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEE
Confidence 3456889999999999854333338999999976542 1224679999999999999999999988766676666
Q ss_pred EEE
Q psy10918 93 LNV 95 (207)
Q Consensus 93 l~v 95 (207)
|+|
T Consensus 81 i~~ 83 (83)
T cd05753 81 ITV 83 (83)
T ss_pred EEC
Confidence 654
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=79.13 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=55.7
Q ss_pred eeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 108 VLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
...+..|+.+.|.|.+ .+.|.+ .+.|++++..+........... ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 3456789999999998 677776 9999999876543222222222 23599999999999999999999998753
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=78.46 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=53.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCC----CCCeeeEEEEeeeCCCCccceEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNR----QSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+.|.|.+.|.|.| .++|++++..+......... ..++.|.|.++.. +|+|.|.|.+.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 4789999999988 99999999887543222222 3457899998754 689999999999999876655443
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=78.47 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCceEEEEEcCceeeeccce-eEEee-----cCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILR-----SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 118 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.|.+.|.|.| .++|+++|..+...... ..... ......|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 368999999998 99999999876433211 11111 1224569999999999999999999999988666444
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=83.17 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe-E------ecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccce
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-I------MTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~------~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.|..+.|.|.+.+.|.+ .+.|++++..+........ . ...+.|.|.++. .+|.|.|.|.+.|..|.. ...
T Consensus 22 ~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~ 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRV-QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLD 99 (109)
T ss_pred CCCEEEEEEECcccCCC-EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEE
Confidence 46789999999999987 9999999988764322111 1 113569999987 589999999999999987 557
Q ss_pred EEEEEEeCC
Q psy10918 91 FFLNVMYSP 99 (207)
Q Consensus 91 ~~l~v~~~~ 99 (207)
+.|.+...|
T Consensus 100 i~L~~~~~p 108 (109)
T cd05773 100 IQLVSTSRP 108 (109)
T ss_pred EEEEecCCC
Confidence 778877655
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-14 Score=78.33 Aligned_cols=67 Identities=25% Similarity=0.406 Sum_probs=51.2
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
+.|.|.+.|.|.| .+.|++++..+.. .....+... ..|.|.++..+|+|.|+|.|.|..|..+.+..
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~~-~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVTE-SGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECCC-CCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 4799999999998 9999998865432 112222222 35999999999999999999999998865544
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=76.15 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=49.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
|+++.|.|.+.|.|.| .++|++++.++.... ........|.|.++ .|+|.|+|.+.|..|..
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~~--~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKED--EMPVGRNVLELTNI--YESANYTCVAISSLGMI 62 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCcc--ceecCccEEEEecc--ccCeeEEEEEEeCCCEE
Confidence 6789999999999998 999999998875432 22233456888887 47999999999998865
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=79.37 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEE-cCceeeeccceeEEe-ecCceEEEEEecCCCCCCeEEEEEEecCCCC-Ccc
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTF-NNSAETVNVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSNKIGH-QRV 185 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~ 185 (207)
..+..|+.+.|.|.+.|.| + .+.|++ ++..+.. ....... .....+.|.|.+++.+|+|.|+|.|.|..|. ...
T Consensus 10 ~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 10 GEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVT-QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred EEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEecc-CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 4577899999999999985 4 999998 4443322 1222222 2334568999999999999999999998754 334
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
++.+
T Consensus 87 sv~l 90 (92)
T cd04977 87 TVNL 90 (92)
T ss_pred EEEE
Confidence 4333
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-14 Score=79.76 Aligned_cols=68 Identities=25% Similarity=0.418 Sum_probs=53.7
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec--CCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
|+++.|.|.+.+.|.| .+.|++++..+........... ...|.|.+++.+|+|.|.|.+.|..|...+
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 6789999999999988 9999999887765332222222 246999999999999999999998886543
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=79.56 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=59.6
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeec----CceEEEEEecCCCC-CCeEEEEEEecCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRS----GTLSVVAYSPNSEL-DYGTLICWGSNKIGH 182 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~-~~g~y~C~~~n~~g~ 182 (207)
..+..|+.+.|.|.+.|.|.|..+.|++++..+.... .+..+... +..+.|.|.++..+ |.|.|.|.|.|..|.
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~ 90 (98)
T cd05758 11 QYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90 (98)
T ss_pred EEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCc
Confidence 3467899999999999998874699999887654322 22333222 23467999999985 489999999999998
Q ss_pred CccceE
Q psy10918 183 QRVPCV 188 (207)
Q Consensus 183 ~~~~~~ 188 (207)
....+.
T Consensus 91 ~~~~~~ 96 (98)
T cd05758 91 GTAIIS 96 (98)
T ss_pred ccEEEE
Confidence 765543
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-14 Score=78.27 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=52.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+.|.|.+.|.|.| .+.|++++..+... .... ......|.|.+++.+|+|.|+|.|.|..|..+..+.+.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPAD--RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCCC--ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4789999999988 99999988654221 1111 222346999999999999999999999998766655443
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=76.69 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=52.1
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~~~v 191 (207)
+.|.|.+.|.|.| .+.|++++..+.... ..++..... ..|.|.+++.+|+|.|+|.|.|..|.. +..+.+.|
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~-~~~~~~~~~-g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTS-NGRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCC-CCCEEEcCC-cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999998 999999987653211 112222222 248899999999999999999999874 45555544
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=77.81 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=51.9
Q ss_pred EEeEeccCCCCcEEEEEECCccccccccCCe--E-----ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 25 FDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--I-----MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 25 l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~-----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
|.|.+.|.|.| .++|+|+|.++........ . ...+.|.|.++...|+|.|+|.|.|..|.. ...+.+
T Consensus 3 i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA 76 (79)
T ss_pred EEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence 78999999998 9999999999975432111 1 112469999999999999999999999976 434433
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=78.02 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=54.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccc-------cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHH-------NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
++|.|.+.|.|.| .+.|++++..... .........+++|.|.+++.+|+|.|.|.+.|..|...+..+.|+|
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4799999999988 9999996432111 1111122346789999999999999999999999987777776653
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=79.02 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=57.1
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
...|+.+.|.|.+.+.|.| .+.|++++..+..... .........|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus 6 ~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEI---GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred ccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCcc---ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 4578999999999999987 9999998876532211 1112233569999999999999999999999987555443
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=79.57 Aligned_cols=70 Identities=23% Similarity=0.479 Sum_probs=55.3
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCC-CCCeeeEEEEeeeCCCCccc
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~~~~~~~~ 89 (207)
.|+++.|.|.+.+.|.+ .++|++++..+...........++.|.|.++.. +|+|.|.|.+.|..|...++
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 34579999999998887 999999998875433344555667899998874 89999999999998865443
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=76.74 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=52.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC--CeEecCCeEEEEecC----CCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ--GIIMTNQSLVLQRVN----RQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~l~i~~~~----~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+.|.|.+.|.|.| .++|++++..+...... .....+++|.|..+. .+|+|.|.|.+.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4789999999998 99999999876432222 222356789998764 2469999999999999776655443
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=77.23 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=52.2
Q ss_pred EEEEEEecc-CCCCceEEEEEcCceeeecccee--EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 117 VNISCEVDA-NPPDVKFSWTFNNSAETVNVAQA--HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 117 ~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
+.|.|.+.+ .|.+ .+.|++++..+....... .+........|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 479999999 7776 999999987654322111 13233445679999999999999999999999987544
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=76.57 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=55.3
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+.|.|.+.|.|+| .+.|++++..+.... ..++........|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~l~~~~-~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMDITPKL-SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEECCCCC-CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4689999999987 999999987654321 122222333446999999999999999999999998876666554
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.8e-14 Score=77.55 Aligned_cols=70 Identities=19% Similarity=0.410 Sum_probs=54.0
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.+.|.| .+.|++++..+... .......+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 4789999999988 89999998776542 12222335689999999999999999999998865 44555554
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=75.33 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=49.8
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
|+.+.|.|.+.|.|.| .+.|++++..+.... ... .+ ...|.|.++ .|+|.|+|.|.|..|....++.
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~~---~~~-~~-~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKED---EMP-VG-RNVLELTNI--YESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCcc---cee-cC-ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence 5789999999999998 999999987643211 111 12 235888876 4789999999999998765544
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=79.25 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=50.7
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCCc
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~ 184 (207)
+|+.+.|.|.+.|.|.| .+.|++++..+..... ..+..... .|.|.++. .+|+|.|+|.|.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~-~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEIDTESD-YRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECccCCC-ceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 47899999999999998 9999999877542221 12222222 47777774 6899999999999999763
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=79.18 Aligned_cols=74 Identities=23% Similarity=0.382 Sum_probs=54.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEEC----CccccccccCCe-E-e---------cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHN----NKTLHHNIAQGI-I-M---------TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~----~~~~~~~~~~~~-~-~---------~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
|+++.|.|.+.+.|.| .+.|+++ +..+........ . . ....|.|.+++.+|+|.|.|.+.|..|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6789999999999988 9999984 333321111000 0 0 114699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.. ..+..|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 76 44666766
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=79.31 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=60.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
....+.+|+++.|.|.+.+ +.+ .+.|++++..+.... ..........|.|.+++.+|+|.|.|.+.+..+.....+
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 3445778999999999876 555 899999998765432 123334456699999999999999999987655444556
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
+.|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 666664
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=77.71 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=49.5
Q ss_pred EEEeEeccCCCCcEEEEEECCccccccccCCeE---------ecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 24 YFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---------MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 24 ~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.|.|.+.|.|.| .++|+|+|.++......... ...+.|.|.+++..|+|.|+|.|.|..|..
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 368999999998 99999999988764322111 112369999999999999999999999876
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=75.51 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=52.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+.|.|+| ++.|++++..+.... .....++ ..|.|.+++.+|+|.|+|.|+|......+...+.++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~--~~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEKC--SRYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCCC--cEEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 3689999999998 999999987653221 2222333 259999999999999999999987665555444443
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=76.31 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=48.7
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.|.|.+.|.|.| .+.|+|++.++.... ......+.+|.|.+++.+|+|.|+|.+.+..
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEKC-SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCCC-cEEEeCCCEEEECcCCHHHCEEEEEEEEccc
Confidence 4689999999998 999999998876532 2334456689999999999999999999764
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-13 Score=75.46 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=55.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+.+|+.+.|.|.+.+. .+ .+.|+++|..+... .+..+ .+ ..|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~~-~~~~~--~~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGEN-NRTRI--TG--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred EEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCCC-ceEEE--eC--CEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 346789999999999986 44 89999998775422 12222 22 25899999999999999999999887655433
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=75.83 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=61.4
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec-cceeEEee----cCceEEEEEecCCCCC-CeEEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN-VAQAHILR----SGTLSVVAYSPNSELD-YGTLICWGSNKI 180 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~----~~~~~~l~i~~~~~~~-~g~y~C~~~n~~ 180 (207)
....+.+|+.+.|.|.+.+.|+|..|.|.+++..+... ..+..+.. .+..+.|.|.++...| .|.|.|.|.|.+
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 34456799999999999999988789999887654332 12222322 3467889999998767 799999999999
Q ss_pred CCCccceE
Q psy10918 181 GHQRVPCV 188 (207)
Q Consensus 181 g~~~~~~~ 188 (207)
|.......
T Consensus 89 G~d~~~i~ 96 (98)
T cd05898 89 GSGTAIIQ 96 (98)
T ss_pred ccceEEEE
Confidence 98865543
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=75.39 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=50.9
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeecc---ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNV---AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
+.|.|.+.+.++++.+.|++++..+.... .............|.|.++..+|+|.|.|.|.|..|....++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 47899987643334999999987764321 111222233456799999999999999999999999875553
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-13 Score=77.76 Aligned_cols=72 Identities=19% Similarity=0.389 Sum_probs=51.8
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeecCceEEEEEecC-----CCCCCeEEEEEEecC-C
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRSGTLSVVAYSPN-----SELDYGTLICWGSNK-I 180 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~-----~~~~~g~y~C~~~n~-~ 180 (207)
...+.+|+.+.|.|.+.+.|+| .+.|+++|..+...... .....++. +.+.++ ...|.|.|+|.|.|. .
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPNGS---LLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccCCe---EEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 3455689999999999999987 99999998876433221 22222332 344443 578999999999999 8
Q ss_pred CCC
Q psy10918 181 GHQ 183 (207)
Q Consensus 181 g~~ 183 (207)
|..
T Consensus 84 G~~ 86 (95)
T cd05722 84 GSI 86 (95)
T ss_pred CcE
Confidence 865
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=76.99 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCce---eeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSA---ETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~---~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
|+.+.|.|.+.+.|.| .+.|++++.. ....... ..+.. .....|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 6789999999999987 9999997421 1111100 01111 12246999999999999999999999998765544
Q ss_pred E
Q psy10918 189 F 189 (207)
Q Consensus 189 ~ 189 (207)
|
T Consensus 79 l 79 (81)
T cd05765 79 L 79 (81)
T ss_pred E
Confidence 4
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-13 Score=78.42 Aligned_cols=74 Identities=16% Similarity=0.366 Sum_probs=56.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-C-------CeEEEEecCCC-CCeeeEEEEeeeC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-N-------QSLVLQRVNRQ-SAGNYTCVGFNIE 83 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~-------~~l~i~~~~~~-d~g~Y~C~~~~~~ 83 (207)
....+.+|+++.|.|.+.+.|.|..+.|++++..+......++... . ++|.|.+++.+ |.|.|.|.+.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 4556788999999999999888746999999988765322222211 1 36999999984 5899999999999
Q ss_pred CCC
Q psy10918 84 GDG 86 (207)
Q Consensus 84 ~~~ 86 (207)
|..
T Consensus 89 G~~ 91 (98)
T cd05758 89 GSG 91 (98)
T ss_pred Ccc
Confidence 876
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-13 Score=77.48 Aligned_cols=67 Identities=24% Similarity=0.481 Sum_probs=49.5
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCCc
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~ 184 (207)
|+.+.|.|.+.|.|.+ .+.|+++|..+............+ .|.|.++. ..|+|.|+|.|+|..|...
T Consensus 19 g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 19 EEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYTLVAG---NLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEEEECC---eEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 5689999999999987 999999988764322111112222 47776654 5899999999999999763
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-13 Score=77.98 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=58.2
Q ss_pred eeeeeCCcEEEEEEecc-----CCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 109 LGVARQEKVNISCEVDA-----NPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~-----~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
..+.+|+.+.|.|.+.+ .|.+ .+.|++++..+.... ...++...+ ..|.|.++..+|+|.|+|.+.|..|.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCcc
Confidence 34568999999999998 5666 999999986543221 122332222 35899999999999999999999988
Q ss_pred CccceEEE
Q psy10918 183 QRVPCVFH 190 (207)
Q Consensus 183 ~~~~~~~~ 190 (207)
...++.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 76665543
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=77.43 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCcEEEEEEeccC--CCCceEEEEEcCceeeeccce--eEE--eecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 114 QEKVNISCEVDAN--PPDVKFSWTFNNSAETVNVAQ--AHI--LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 114 g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~--~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
|+.+.|.|.+.+. |.+ .+.|.+++......... ... ......+.|.|.+++.+|+|.|.|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 6789999999998 555 99999876543211110 001 1112356799999999999999999999999887766
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5543
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=76.83 Aligned_cols=68 Identities=18% Similarity=0.391 Sum_probs=55.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+....+..|+++.|.|.+.+ +.+ .+.|++|+.++..... +....++.|.|.+++..|+|.|.|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC-eEEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 45667889999999999764 445 8999999999876432 34455678999999999999999999854
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=75.46 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+....+..|+.+.|.|.+.|.|.|..|.|+++|..+... .....+.|.|..+ .|.|.|.|.|+|..|...
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-------~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-------PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-------CCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 344567899999999999999987569999998765320 1122346888766 478999999999999653
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=100.53 Aligned_cols=170 Identities=25% Similarity=0.410 Sum_probs=118.9
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.....+.. .+..|++|.|.|.+.++|++..+.|++.++.+. ..+......+|......++..+.|.|++.|..+.
T Consensus 9 v~~~~~l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 9 VCESSSLTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred cccCCCCCh-hhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccC
Confidence 333444445 788999999999999988877999999887766 2334455677888888888899999999998777
Q ss_pred CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccce----eEEeec---CceE
Q psy10918 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQ----AHILRS---GTLS 157 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~----~~~~~~---~~~~ 157 (207)
.......+.+.++|.+...... .....+..+.+.|.+.. ..+...+.|..++......... ...... ...+
T Consensus 85 ~~~~~~~l~v~~~pa~~~~~~e-~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s 163 (741)
T KOG3515|consen 85 PSRCPMILDVDYPPACLPELGE-IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPS 163 (741)
T ss_pred ceecceeeccccCccccccccc-hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecccc
Confidence 6666777888888765543322 22346778899995543 3333499999987654332210 000111 1134
Q ss_pred EEEEecCCCCCCeEEEEEEecCC
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+.+...+..+.|.|+|.|.|..
T Consensus 164 ~l~~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 164 LLKQTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred ceeeEEEEecCCceeEccccccc
Confidence 57777888999999999999953
|
|
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=74.52 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=54.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccc---eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVA---QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.+.|.+ .+.|++.++....... ..........+.|.|.+++.+|+|.|.|.|+|..+....+..+.
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 6889999999998776 9999987654221111 11111222356899999999999999999999876333344454
Q ss_pred Eee
Q psy10918 191 IVS 193 (207)
Q Consensus 191 v~~ 193 (207)
|.+
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 444
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=73.62 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=55.4
Q ss_pred EEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 24 YFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 24 ~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|.|.+.+.|.+ .+.|++++..+.......+. ..+..|.|.+++.+|.|.|.|.+.|..|.. ...+.|.|.
T Consensus 2 ~L~C~v~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCC-EEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 689999999988 99999999887653322222 223569999999999999999999998877 446666664
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=74.16 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=49.2
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
+....+.+|+.++|.|.+.+.|.+..+.|++++..+. .....|.|.++ .+|+|.|.|.|.|.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-----------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-----------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-----------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 3444678999999999999987655899999987642 11235788888 99999999999985
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-13 Score=74.94 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=47.1
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC----CCCeEEEEEEecCCCCCc
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE----LDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~n~~g~~~ 184 (207)
+.|.|.+.|.|.| .++|++++..+..... ..+........|.|..++. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~-~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKD-PRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCC-CCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 4789999999998 9999999876543221 1222222233577777643 689999999999999653
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=75.30 Aligned_cols=73 Identities=26% Similarity=0.451 Sum_probs=52.8
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCc---cc-ccccc---CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNK---TL-HHNIA---QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~---~~-~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
|+++.|.|.+.+.|.+ .+.|++++. .+ ..... .........|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFP 78 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEE
Confidence 7889999999999988 999999742 11 11110 1112234679999999999999999999998875 44555
Q ss_pred EE
Q psy10918 93 LN 94 (207)
Q Consensus 93 l~ 94 (207)
|.
T Consensus 79 l~ 80 (81)
T cd05765 79 LS 80 (81)
T ss_pred Ee
Confidence 54
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=74.37 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=46.2
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeecc-----ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNV-----AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|.+.|.|.| .+.|++++....... ...++.... ...|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEec-CCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 4799999999998 999999654321100 111111111 2358899999999999999999999976
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=75.55 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=49.6
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCCc
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~ 184 (207)
+..+.|.|.+.|.|.| .+.|++++..+..... ++...+ ..|.|.++. .+|+|.|.|.|+|..|...
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~~~~--~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 85 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLDIDLTND--RYSMVG--GNLVINNPDKYKDAGRYVCIVSNIYGKVR 85 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEEccCCCC--eEEEEC--CEEEECcCCcCCCCEEEEEEEEeCcceEE
Confidence 4579999999999998 9999999876532222 222222 248888775 6899999999999999763
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=73.21 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.9
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
+..|+.+.|.|.+.+.|.+ .+.|++++..+.................|.|.++..+|.|.|.|.+.|..|....+..+
T Consensus 6 ~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred ecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4578999999999998876 99999987664322111111112334568899999999999999999999876555444
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=73.62 Aligned_cols=76 Identities=13% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccC--Ce----EecCCeEEEEecCCCCCeeeEEEEeeeCC-CCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ--GI----IMTNQSLVLQRVNRQSAGNYTCVGFNIEG-DGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~--~~----~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~-~~~~~~~~ 92 (207)
|++++|.|.+.+.+.+ .+.|++.+......... .. ......|.|.+++.+|+|.|.|.+.|..+ .....++.
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999988776 99999877543211100 00 11235799999999999999999987654 23355666
Q ss_pred EEEE
Q psy10918 93 LNVM 96 (207)
Q Consensus 93 l~v~ 96 (207)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6664
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=73.76 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=49.8
Q ss_pred EEEEeEecc-CCCCcEEEEEECCccccccccCC---eE--ecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG---II--MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|.|.+.+ .|.+ .+.|++++..+....... +. .....|.|.+++.+|+|.|.|.+.|..|..
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 478999999 7877 999999998887543222 11 123579999999999999999999998865
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=75.35 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=55.2
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccc-cccCCeE-ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHH-NIAQGII-MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.....+.+|+.+.|.|.. .+.|.+ .+.|++++.++.. .+...+. ..++.|.|.+++..|+|.|.|.+.|....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 345567889999999987 556776 9999999876421 1222233 33689999999999999999999987543
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=72.53 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=45.7
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC----CCCCeEEEEEEecCCCCCc
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS----ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~~~n~~g~~~ 184 (207)
+.|.|.+.|.|.| .+.|++++..+...... .+........|.|..+. .+|+|.|.|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDP-RVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCC-cEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999999998 99999998754322211 12222222357777653 2469999999999999653
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=72.69 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC----CCCeEEEEEEecCCCCCc
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE----LDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~n~~g~~~ 184 (207)
+.|.|.+.|.|.| ++.|++++..+...... ..........|.|..+.. .|.|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~-~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDP-KVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCC-CEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 4799999999998 99999998765322211 121112222466665543 378999999999999754
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=74.63 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=54.3
Q ss_pred CcccCCCcEEEEeEeccC-----CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAV-----PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-----~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+.+|.+..|.|...+. +.+ .+.|+|++.++.... .....++.|.|.++..+|+|.|+|.+.|..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~i~~~~--~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKLLEGDR--KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCC-cEEEeECCEECCCCc--cEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 456789999999987432 345 899999999887533 222367889999999999999999999876654
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=73.85 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=55.9
Q ss_pred cCCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+|++++|.|.+.+ .+.+ .+.|++++..+... ....++.|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGGLPSR----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCcCCCc----ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 45667889999999999865 5555 99999998765432 22335789999999999999999999988765
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-12 Score=72.18 Aligned_cols=77 Identities=21% Similarity=0.387 Sum_probs=56.9
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe---EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI---IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
.+..|+++.|.|.+.+.+.+ .+.|++++..+........ ......|.|.+++.+|+|.|.|.+.|..|.. ..++.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK 82 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence 45679999999999988877 8999999887754321111 1112369999999999999999999887764 43554
Q ss_pred EE
Q psy10918 93 LN 94 (207)
Q Consensus 93 l~ 94 (207)
|+
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 44
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-12 Score=73.92 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc-cc-----cCCeE--e---cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-NI-----AQGII--M---TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~~-----~~~~~--~---~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+..+.+|+++.|.|.+.+.+.+ .+.|++++..+.. +. ..++. . ...+|.|.+++.+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 34567899999999999998877 8999998754311 00 11111 1 124799999999999999999986
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-12 Score=73.88 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=52.9
Q ss_pred CCcEEEEeEeccC--CCCcEEEEEECCcccccccc----CC---eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 20 DSDVYFDCDIVAV--PPVYKVEWRHNNKTLHHNIA----QG---IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 20 g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~~~~----~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
|+++.|.|.+.+. +.+ .+.|++++..+..... .. ......+|.|.+++..|+|.|.|.+.|..+.. ..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEE
Confidence 7889999999988 665 9999987765432110 00 01123579999999999999999999988765 435
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 54544
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=67.65 Aligned_cols=62 Identities=24% Similarity=0.499 Sum_probs=49.7
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+|++++|.|.+.+.+.+ .+.|++++..+.. ..........|.|.+++..|+|.|.|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLPE--SNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECCC--CCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 48899999998777766 8999999877762 22333445689999999999999999998754
|
|
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=72.48 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=48.4
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCC
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~ 183 (207)
.+..+.|.|.+.|.|.+ .+.|++++..+..... ..+.... ..|.|.++. .+|+|.|+|.|.|..|..
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~-~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPD-SRYSLVG--GNLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCC-CCEEEEC--CEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 34679999999999887 9999999876532211 1121111 247787776 489999999999999865
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-12 Score=70.64 Aligned_cols=63 Identities=19% Similarity=0.457 Sum_probs=46.8
Q ss_pred EEEEeEecc-CCCCcEEEEEECCcccccccc--CCeE--e--cCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGII--M--TNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~--~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|.|.+.+ .|.+ .+.|++++..+..... .++. . ....|.|.+++..|+|.|.|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~-~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSL-RFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCC-ceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 479999865 4555 9999999988864221 1111 1 23569999999999999999999988755
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=71.74 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=55.2
Q ss_pred ceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+..|+.++|.|.+.+ .|.+ .+.|++++..+... .. .....|.|.+++.+|+|.|.|.|.|..|....
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~~-----~~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGGLPSR-----AM--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCcCCCc-----cc--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 3345678999999999975 4554 99999987653211 11 11235999999999999999999999998766
Q ss_pred ceE
Q psy10918 186 PCV 188 (207)
Q Consensus 186 ~~~ 188 (207)
++.
T Consensus 81 ~~~ 83 (85)
T cd05754 81 TAT 83 (85)
T ss_pred EEE
Confidence 544
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=70.54 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=51.9
Q ss_pred eeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccc-eeEEee-cCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVA-QAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
...+.+|+.+.|.|.... .|++ .+.|++++.......+ +..+.. +| .|.|.+++.+|+|.|.|.|+|.....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEecccCC
Confidence 345778999999997665 4655 9999999765322221 122222 33 48999999999999999999987544
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=71.37 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCCcccCCCcEEEEeEecc----------CCCCcEEEEEECCccccccc-----cCCeEecCCeEEEEecCCCCCeeeEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVA----------VPPVYKVEWRHNNKTLHHNI-----AQGIIMTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~----------~~~~~~i~W~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~Y~C 77 (207)
....+.+|+.+.|.|.... .....++.|+|++..+.... ..++...+..|.|.++..+|+|.|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 3456789999999999621 11122799999975554422 13566678899999999999999999
Q ss_pred EEeeeCC
Q psy10918 78 VGFNIEG 84 (207)
Q Consensus 78 ~~~~~~~ 84 (207)
.+.|...
T Consensus 88 ~~rN~t~ 94 (104)
T cd05896 88 VLRNSTY 94 (104)
T ss_pred EECCCCc
Confidence 9997654
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=82.75 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=55.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEecc-----CCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVA-----VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~-----~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+.....+..+.+|+++.|.|.+.+ .+.+ .++|+|++.++...........+++|.|.+++.+|+|.|+|.+..
T Consensus 131 ~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 131 TFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred EEecCCccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEE
Confidence 3333334456678999999999753 3455 999999999887543322223456899999999999999999986
Q ss_pred e
Q psy10918 82 I 82 (207)
Q Consensus 82 ~ 82 (207)
.
T Consensus 210 ~ 210 (227)
T PHA02826 210 N 210 (227)
T ss_pred e
Confidence 5
|
|
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=71.88 Aligned_cols=69 Identities=14% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--------cccccccCCeEe---cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--------TLHHNIAQGIIM---TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--------~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+..+.+|+++.|.|.+.+.+.+ .+.|++.+. ......+..... ...+|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 45678899999999999988877 899986322 111111111111 224799999999999999999986
Q ss_pred e
Q psy10918 82 I 82 (207)
Q Consensus 82 ~ 82 (207)
.
T Consensus 84 ~ 84 (95)
T cd07701 84 M 84 (95)
T ss_pred e
Confidence 4
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=70.62 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCceeeeeeCCcEEEEEE-eccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe-EEEEEEecCCCC
Q psy10918 105 QQRVLGVARQEKVNISCE-VDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG-TLICWGSNKIGH 182 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~n~~g~ 182 (207)
......+.+|+.+.|.|. ..|.|.| .+.|+.++........+..+..+| .|.|.++..+|+| .|.|.|.|....
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEccccc
Confidence 344556789999999997 6788887 999997654422222222233333 4899999999999 799999997643
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-11 Score=68.89 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=53.9
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...+..|+.+.|.|.+.+ |.+ .+.|++++..+..... ..++.... ..|.|.+++.+|+|.|.|.|.|..+ .+..
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~-~~~~ 79 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGF-KQTL 79 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCcc-ceeE
Confidence 345678999999999976 665 9999999876443210 11222222 1388999999999999999997653 2233
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 80 ~~~~l~ 85 (89)
T cd04979 80 ATYSLN 85 (89)
T ss_pred eEEEEE
Confidence 334443
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=69.15 Aligned_cols=78 Identities=22% Similarity=0.435 Sum_probs=53.0
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCc--ccccc--ccCCeEecCCeEEEEecCCCCCeeeEEEEee-eCCCCccce
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN-IEGDGESNA 90 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~~ 90 (207)
.+.+|+++.|.|.. ..|.+ .+.||+... ..... ...+.....+.|.|.+++.+|+|.|.|.+.+ ..+.. ...
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~ 83 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAK 83 (91)
T ss_pred EEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEE
Confidence 45789999999996 46666 899998432 21110 1223344557799999999999999999984 44323 335
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
++|+|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 566665
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=69.24 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=54.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceee-------eccceeEEee-cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAET-------VNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++.+.... ....+..... ......|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 34467899999999999998887 999986332111 0111222211 23446799999999999999999998
Q ss_pred CCCCCccceEE
Q psy10918 179 KIGHQRVPCVF 189 (207)
Q Consensus 179 ~~g~~~~~~~~ 189 (207)
..+. +..+.|
T Consensus 84 ~~~~-~~~~~l 93 (95)
T cd07701 84 MPVK-TSKAYL 93 (95)
T ss_pred ecCc-cEEEEE
Confidence 4333 444444
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-11 Score=68.23 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=51.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
....+..|+.+.|.|.+.+ +.+ ++.|+++|..+........+ .++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCC-eEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 3456789999999999864 555 99999999876543222222 222 38899999999999999999853
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=71.18 Aligned_cols=71 Identities=17% Similarity=0.342 Sum_probs=55.9
Q ss_pred cCCCcccCCCcEEEEeE-eccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeeeC
Q psy10918 12 LNPDHIKEDSDVYFDCD-IVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNIE 83 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~ 83 (207)
.....+.+|+.+.|.|. ..+.|.+ .|.|++++...-..+.+.....++.|.|.+++..|.| .|.|.+.+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 46678899999999997 5888888 9999987655333333333344689999999999999 8999999764
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=66.98 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=47.7
Q ss_pred EEEEeEeccCCCCcEEEEEECCcccccccc----CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIA----QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|+|.+.+..++..|+||+++.++..... .......++|.|.....+|.+.|+|++.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999966544449999999999865321 1111233469999999999999999999987654
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=68.58 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCcEEEEEEeccCCC-CceEEEEEcCceeeecc--ceeE---EeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 114 QEKVNISCEVDANPP-DVKFSWTFNNSAETVNV--AQAH---ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 114 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
|+.+.|.|.+.+.+. .+.+.|...++...... ...+ .......+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987643 35889988775432111 1000 11122356899999999999999999999988776665
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 5554
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-11 Score=69.01 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=57.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--------cCCeEEEEecCCCC-CeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--------TNQSLVLQRVNRQS-AGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d-~g~Y~C~~~~~ 82 (207)
.....+.+|+++.|.|.+.+.|.|..|.|..++..+......++.. ..+.|.|.++...| .|.|.|.+.|.
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 3455678899999999998888877899999887765432222221 12469999998766 79999999999
Q ss_pred CCCC
Q psy10918 83 EGDG 86 (207)
Q Consensus 83 ~~~~ 86 (207)
+|..
T Consensus 88 ~G~d 91 (98)
T cd05898 88 FGSG 91 (98)
T ss_pred Cccc
Confidence 9977
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=67.18 Aligned_cols=59 Identities=29% Similarity=0.579 Sum_probs=44.3
Q ss_pred CCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCe----EEEEecCCCCCeeeEEEE
Q psy10918 20 DSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS----LVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 20 g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~----l~i~~~~~~d~g~Y~C~~ 79 (207)
|++++|.|.+ ...+.. .+.|++++..............+.. |.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPT-TVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTS-EEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCc-EEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 555555 9999999887665332222222232 999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=67.46 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee-------ccceeEE-eecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV-------NVAQAHI-LRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+..|+.+.|.|.+.+.|.+ .+.|++++..... ...+..+ ........|.|.++..+|+|.|+|.+..
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 457799999999999998887 9999987753211 1111111 1122346799999999999999999998
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=70.32 Aligned_cols=72 Identities=26% Similarity=0.577 Sum_probs=54.9
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+.+|+++.|.|.+.+.+.. .+.|++++..+... ...+.+.+++.+|.|.|.|.+.+..+...+..+.|+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSS--------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEE--------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeee--------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 568899999999999988776 99999988766532 122667788899999999999886554445555554
Q ss_pred E
Q psy10918 95 V 95 (207)
Q Consensus 95 v 95 (207)
|
T Consensus 80 V 80 (80)
T PF13895_consen 80 V 80 (80)
T ss_dssp E
T ss_pred C
Confidence 3
|
... |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=68.59 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=50.2
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+.+|+.++|.|.+.+..+...+.|++++..+.. ......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~---------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY---------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc---------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 4679999999999865444348999998865321 1123458999999999999999999988744
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=69.61 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=53.4
Q ss_pred eeeeCCcEEEEEEeccC-----CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 110 GVARQEKVNISCEVDAN-----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+..|+...|.|...+. |.| .+.|++++..+... ...+. ....|.|.++..+|+|.|+|.|.|..+...
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~i~~~--~~~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKLLEGD--RKRFV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCC-cEEEeECCEECCCC--ccEEe---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 45688999999987643 344 99999999775422 22222 223599999999999999999999987665
Q ss_pred cceE
Q psy10918 185 VPCV 188 (207)
Q Consensus 185 ~~~~ 188 (207)
..+.
T Consensus 80 ~~~t 83 (92)
T cd05757 80 YNVT 83 (92)
T ss_pred EEEE
Confidence 4433
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-11 Score=68.88 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC--CCCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE--GDGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~--~~~~~~~~ 91 (207)
...|.+|++|+|.|.... +.. .+.|+++|....... .........|.|.+++.+|+|.|+|...+.. .+..+..+
T Consensus 10 ~~vV~~G~~VtL~C~~~~-~~~-~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~l 86 (91)
T cd05751 10 SSVVPLGKPVTLRCQGPY-GAV-EYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPL 86 (91)
T ss_pred CCccCCCCcEEEEEecCC-CCC-EEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcE
Confidence 356789999999998763 334 899999987544211 1111223569999999999999999998752 12334445
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 87 el~V 90 (91)
T cd05751 87 ELVV 90 (91)
T ss_pred EEEe
Confidence 4443
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-11 Score=63.53 Aligned_cols=63 Identities=19% Similarity=0.393 Sum_probs=47.7
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+|+.+.|.|.+.+.+.+ .+.|++++..+. ..... ......|.|.++...|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~---~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLP---ESNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECC---CCCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 37889999998877776 999999877644 11111 12234689999999999999999998764
|
|
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-11 Score=68.28 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred CcccCCCcEEEEeEe-cc----CCCCcEEEEEECCccccccccCCeE-ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 15 DHIKEDSDVYFDCDI-VA----VPPVYKVEWRHNNKTLHHNIAQGII-MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~-~~----~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+..|.+..|.|.- .+ .+.+ .+.|||++.++......... .....|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 345678999999973 22 3444 89999999988753322222 23457999999999999999999987543
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=66.73 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=51.8
Q ss_pred CCcEEEEeEeccCCC-CcEEEEEECCcccccc---cc--CCe---EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 20 DSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHN---IA--QGI---IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 20 g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~---~~--~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
|+++.|.|.+.+.+. ...+.|.+.+...... .. ... ....+.|.|.+++..|+|.|+|.+.|..+.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence 788999999976432 2388998877543210 10 000 1123579999999999999999999887755 445
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 556664
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=63.30 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCc--eEEEEEecCCCCCCeEEEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT--LSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~~ 176 (207)
|+.+.|.|.+...+++..+.|+++++........ ....... ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT-NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE-EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee-EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999333444599999998764432211 1112222 123999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=64.89 Aligned_cols=79 Identities=27% Similarity=0.502 Sum_probs=56.0
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+..|+++.|.|.+.+.+.+ .+.|+++ +..+............ ..|.|.+++..|+|.|.|.+.+..+.... .+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~-~~ 81 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS-TT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE-EE
Confidence 456789999999999887555 9999998 7666522222222222 57999999999999999999966655433 24
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 4443
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=64.89 Aligned_cols=79 Identities=27% Similarity=0.502 Sum_probs=56.0
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+..|+++.|.|.+.+.+.+ .+.|+++ +..+............ ..|.|.+++..|+|.|.|.+.+..+.... .+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~-~~ 81 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS-TT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE-EE
Confidence 456789999999999887555 9999998 7666522222222222 57999999999999999999966655433 24
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 4443
|
|
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-10 Score=65.24 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=61.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC-------CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-------QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
....|.+|+++.|.|.+.++|.+..+.|.+++..+...........+ +.|+|..++.+|.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 34568899999999999999998459999988766432221122211 35999999999999999999988775
Q ss_pred CccceEEEEEE
Q psy10918 86 GESNAFFLNVM 96 (207)
Q Consensus 86 ~~~~~~~l~v~ 96 (207)
. +.++.|.|+
T Consensus 91 ~-s~tF~l~v~ 100 (101)
T cd05860 91 A-SVTFNVYVN 100 (101)
T ss_pred E-EEEEEEEEe
Confidence 5 445555543
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=63.40 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=61.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-C---ceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-G---TLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
....+.+|+.+.|.|.+.++|+|..+.|.+++..+............ . -.+.|.+..++.+++|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 34567899999999999999998459999987654322221111111 1 2467999999999999999999998887
Q ss_pred CccceEEE
Q psy10918 183 QRVPCVFH 190 (207)
Q Consensus 183 ~~~~~~~~ 190 (207)
.+.++.+.
T Consensus 91 ~s~tF~l~ 98 (101)
T cd05860 91 ASVTFNVY 98 (101)
T ss_pred EEEEEEEE
Confidence 75554443
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=67.74 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=46.1
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccc-cccc-----------cCC--eEe---c--CCeEEEEecCCCCCeeeEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-HHNI-----------AQG--IIM---T--NQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~-~~~~-----------~~~--~~~---~--~~~l~i~~~~~~d~g~Y~C 77 (207)
+.+|++++|.|.+.+.+.+ .+.|++++... .... ..+ ... . ...|+|.+++.+|+|.|+|
T Consensus 4 ~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 4 GKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred eeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 5679999999999887766 89999765321 1100 000 011 1 1359999999999999999
Q ss_pred EEeeeC
Q psy10918 78 VGFNIE 83 (207)
Q Consensus 78 ~~~~~~ 83 (207)
.+.+..
T Consensus 83 ~v~~~~ 88 (94)
T cd07690 83 EVEDKK 88 (94)
T ss_pred EECCcc
Confidence 998654
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=63.82 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=50.8
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
...+.+|+++.|.|...+.. . .+.|++++..+..+ .+.......|.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~~-A-~v~W~~ng~~l~~~--~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSNL-A-SPVWLFNGTPLNAQ--FSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCCC-c-cEEEEECCcccCCC--cceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 45678899999999987764 4 89999999988653 2344445568899999999999999986
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-10 Score=65.12 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=50.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-------------ceeEEee---cCceEEEEEecCCCCCCeEEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-------------AQAHILR---SGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-------------~~~~~~~---~~~~~~l~i~~~~~~~~g~y~ 173 (207)
.+..|+.++|.|...+.+.+ .+.|++++....... ++..... ......|.|.+++.+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35689999999999988776 999997654321110 0111111 233456999999999999999
Q ss_pred EEEecCCC
Q psy10918 174 CWGSNKIG 181 (207)
Q Consensus 174 C~~~n~~g 181 (207)
|.+.|..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99998654
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=61.99 Aligned_cols=70 Identities=16% Similarity=0.302 Sum_probs=47.3
Q ss_pred cEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc----eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 116 KVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT----LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 116 ~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
.+.|.|.+.+. |.+ .+.|++++..+...........++. .+.|.+.....+|.|.|+|.|.|........
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~ 75 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE 75 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence 36899999875 665 9999999876542221122222322 3467787777888999999999987544333
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-10 Score=65.03 Aligned_cols=70 Identities=16% Similarity=0.365 Sum_probs=48.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccc-c-cc----ccCCeEe-----cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-H-HN----IAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~-~-~~----~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
....+.+|++++|.|.+.+.+.+ .+.|++.+..+ . .. ...++.. ....|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 45567899999999999877766 89998633211 0 00 0112211 224699999999999999999985
Q ss_pred eC
Q psy10918 82 IE 83 (207)
Q Consensus 82 ~~ 83 (207)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 43
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-09 Score=60.51 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=55.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEc-CceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFN-NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
.+..|+.+.|.|.+.+.+.+ .+.|+++ +..+. ...............|.|.+++..|+|.|.|.+.+..+.......
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45689999999999988565 9999998 54432 112222333333567999999999999999999987776544433
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-09 Score=60.51 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=55.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEc-CceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFN-NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
.+..|+.+.|.|.+.+.+.+ .+.|+++ +..+. ...............|.|.+++..|+|.|.|.+.+..+.......
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45689999999999988565 9999998 54432 112222333333567999999999999999999987776544433
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=64.68 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=50.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc------------------cccCCeEecCCeEEEEecCCCCCe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH------------------NIAQGIIMTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~d~g 73 (207)
+.+..+.+|+++.|.|....... ..+.|||....... ...+.....+++|.|.+++..|+|
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~-~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENL-LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCc-eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 44556788999999998643332 38999996321100 011222344678999999999999
Q ss_pred eeEEEEeeeCCC
Q psy10918 74 NYTCVGFNIEGD 85 (207)
Q Consensus 74 ~Y~C~~~~~~~~ 85 (207)
.|.|.+.+....
T Consensus 84 ~Y~~~v~~~~~~ 95 (105)
T cd05774 84 FYTLQTITTNFQ 95 (105)
T ss_pred EEEEEEEeCCcc
Confidence 999999876543
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=65.68 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCcccCCCcEEEEeEecc--CCCCcEEEEEECCc----cccc-c---------ccCC-eE----ecCCeEEEEecCCCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNNK----TLHH-N---------IAQG-II----MTNQSLVLQRVNRQSA 72 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~~----~~~~-~---------~~~~-~~----~~~~~l~i~~~~~~d~ 72 (207)
+.....|+++.|+|.... ......|.|+|.+. .+-. . ..+. .. ..+-+|.|.+++..|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456678999999998752 22234899999532 1110 0 0011 11 1234699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCcee
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE 141 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~ 141 (207)
|.|+|.++........ .-+|.+..+.... ..........-.-..+.|.+.|+|.| ++.|..+.+..
T Consensus 100 GtY~C~fQkge~~~~k-~ehLt~V~~~~Ls-v~a~~~dFp~~~~~~i~C~sggfP~P-~~~Wle~~~~~ 165 (221)
T PHA03376 100 GNYLCRMKLGETEVTK-QEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGVE 165 (221)
T ss_pred ceEEEEEEcCCCceee-eeeeeeeecceEE-EEeccccCCCCCeeEEEEecCCcCCc-hheeccccCCC
Confidence 9999999854422211 1122222111100 00000000113456899998888888 99999876543
|
|
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-09 Score=59.59 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=47.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec---CceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS---GTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|...+..|+..|.|++++..+..... ..... ...+.|.+...+.+|++.|+|.|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999987755569999999987643211 11111 123468898999999999999999998754
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=60.40 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=52.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC-----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
+.|.|.+.+..++..|+|++++.++...... ......++|.|..-..+|...|+|.+.|+.-........|.|++
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 6899999886555599999999988753211 01112245888777777788999999987654445556677664
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=64.12 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=49.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCcccccc----------------c-cCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----------------I-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~----------------~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
|++|+|.|........ .+.|+++....... . .+.....+.+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~-~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQ-EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCE-EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 7899999998764443 89999966332110 0 0111223467999999999999999999866
Q ss_pred CCCCccceEEE
Q psy10918 83 EGDGESNAFFL 93 (207)
Q Consensus 83 ~~~~~~~~~~l 93 (207)
.+......+.|
T Consensus 80 ~~~~~~~~~~l 90 (92)
T cd05741 80 NGVTENAKFFL 90 (92)
T ss_pred CCcEEEEEEEE
Confidence 55444444444
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=61.96 Aligned_cols=79 Identities=11% Similarity=0.283 Sum_probs=50.2
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEec-CCCCCcc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNS--AETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSN-KIGHQRV 185 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~ 185 (207)
...+|+.+.|.|.. +.|.+ .+.|++.+. ...... ...+..... ..|.|.++..+|+|.|.|.|.| ..+....
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEec--CeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 35689999999996 46665 999998432 211110 111222222 2388999999999999999985 5554444
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
...|.|+
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 4444443
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-09 Score=61.33 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=49.1
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee-------ccceeEE-eecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV-------NVAQAHI-LRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..+.+|+.+.|.|.+.+.+.+ .+.|++.+..... ...+... ........|.|.+++.+|+|.|.|.+.+..
T Consensus 7 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 7 VTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 356789999999999887766 9999863322111 0111122 112234569999999999999999999764
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.9e-10 Score=63.04 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=46.7
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..|+.+.|.|.+.+.|.. .+.|++++..+... ... +.+.++..+|.|.|+|.+.+..+
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~---------~~~--~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSS---------QNG--LFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEE---------SSE--EEESSEEGGGTEEEEEEEEETTE
T ss_pred EEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeee---------eee--eeeeeeccccCEEEEEEEEeCCC
Confidence 46789999999999988775 99999987654311 111 55677888999999999999654
|
... |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-09 Score=60.49 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=43.1
Q ss_pred cEEEEeEecc-CCCCcEEEEEECCccccccccCCeEe-------cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 22 DVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIM-------TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 22 ~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.|.|.+.+ .|.+ .+.|++++.++.......... ..+.|.+.....+|.|.|+|.+.|...
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 3689999987 5666 999999998876432111111 113577777777788999999987653
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=61.81 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc--c----cccCCeE--e-cC--CeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--H----NIAQGII--M-TN--QSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~--~----~~~~~~~--~-~~--~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
++..+.+|+++.|.|.+.+.... .+.|++.+..+. . ..+.++. . .+ .+|+|.+++.+|+|.|+|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 45668899999999999887654 788887664331 0 0112222 1 12 2599999999999999999974
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=61.21 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeeeCCcEEEEEEecc----------CCCCceEEEEEcCceeeeccc----eeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 109 LGVARQEKVNISCEVDA----------NPPDVKFSWTFNNSAETVNVA----QAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~----------~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
..+.+|+.+.|.|.... ......+.|+|++........ ..++...+. .|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence 34678999999998621 222348999998744333221 124444444 48889999999999999
Q ss_pred EEecCCCCCccc
Q psy10918 175 WGSNKIGHQRVP 186 (207)
Q Consensus 175 ~~~n~~g~~~~~ 186 (207)
.+.|...-...+
T Consensus 88 ~~rN~t~C~~~~ 99 (104)
T cd05896 88 VLRNSTYCMKVS 99 (104)
T ss_pred EECCCCcceEEE
Confidence 999976544333
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-09 Score=60.75 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=48.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|+.++|.|... .+.. .+.|+++|...... .....+....+.|.+++.+|+|.|+|...+.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~-~f~l~k~g~~~~~~----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAV-EYRLYREGSTFAVK----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCC-EEEEEECCCCcccc----ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 467899999999886 4444 89999988753321 1112344556899999999999999999986
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=60.16 Aligned_cols=76 Identities=17% Similarity=0.364 Sum_probs=48.3
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCcc----cc-----cc------ccCCeE-----ecCCeEEEEecCCCCCeeeEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKT----LH-----HN------IAQGII-----MTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~----~~-----~~------~~~~~~-----~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
|++++|.|..........+.|++.... +. .. ...+.. ....+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998765444447999985321 00 00 000111 12356999999999999999998
Q ss_pred eeeCCCCccceEEEEE
Q psy10918 80 FNIEGDGESNAFFLNV 95 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v 95 (207)
...........+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7544333455666665
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.93 E-value=8e-09 Score=60.29 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=48.8
Q ss_pred eeeCCcEEEEEEe-ccC----CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEV-DAN----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 111 ~~~g~~~~l~C~~-~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+..|....|.|.- .+. +.+ .+.|+|++..+.... ...........|.|.++..+|+|.|+|.|.+..+..
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~l~~~~--~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVLLDKDN--EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCC-cEEEccCCEECcCCC--cceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 4577889999963 222 344 999999997754222 122221223359999999999999999999987654
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-09 Score=63.28 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=51.9
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccc-cc------------c--CCeEe--cCCeEEEEecCCCCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-NI------------A--QGIIM--TNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~~------------~--~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
..|++|+|.|..........+.|++....+.. .. . .+... .+.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998755222237999986422211 00 0 01111 23579999999999999999998
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
...+......+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 777666566666665
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-09 Score=58.76 Aligned_cols=59 Identities=25% Similarity=0.458 Sum_probs=41.5
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.+.|.|.+.+.+++..+.|+ +.... ............+.|.+.++..+|.|.|+|.|+|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~---~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPS---FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEE---EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCc---eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 39999999998855699999 11110 1111122233455799999999999999999987
|
... |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=58.08 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=48.1
Q ss_pred CcEEEEeEeccCCCCcEEEEEECCc----cccc-----------cccCCeEe-----cCCeEEEEecCCCCCeeeEEEEe
Q psy10918 21 SDVYFDCDIVAVPPVYKVEWRHNNK----TLHH-----------NIAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~~~i~W~~~~~----~~~~-----------~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
++++|.|.........++.|.|... .+.. .-..+... .+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999987655556899988421 1110 00011112 24679999999999999999987
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
............|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 544333355666665
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.4e-09 Score=62.34 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=50.1
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcc--cc----c------cccCCeEe------cCCeEEEEecCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT--LH----H------NIAQGIIM------TNQSLVLQRVNRQS 71 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~--~~----~------~~~~~~~~------~~~~l~i~~~~~~d 71 (207)
+.+....+.+|++++|.|.+...+.. .+.||+.... .. . ....++.. ....|.|.+++.+|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 45567778999999999999876555 8999985321 00 0 01112211 12369999999999
Q ss_pred CeeeEEEEeee
Q psy10918 72 AGNYTCVGFNI 82 (207)
Q Consensus 72 ~g~Y~C~~~~~ 82 (207)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999999854
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=59.14 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCCcEEEEeEeccCC-----------CCcEEEEEECCc--c---cc---------ccccCCeEe-------cCCeEEEEe
Q psy10918 19 EDSDVYFDCDIVAVP-----------PVYKVEWRHNNK--T---LH---------HNIAQGIIM-------TNQSLVLQR 66 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~-----------~~~~i~W~~~~~--~---~~---------~~~~~~~~~-------~~~~l~i~~ 66 (207)
.|++++|.|...... ....|.|+|-.. . +. ..-..++.. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999986432 123899998421 0 00 000112222 346799999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
++.+|+|.|+|.+.++.... +..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 99999999999998654433 334445443
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=60.22 Aligned_cols=61 Identities=25% Similarity=0.543 Sum_probs=41.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
+..+.|.|.+.+.+....++|+ +...............+..|.|.++..+|.|.|.|.+.|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3339999999887734499999 111111111112223456799999999999999999976
|
... |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=61.76 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=49.4
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc--------------ccccCCeEe-----cCCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH--------------HNIAQGIIM-----TNQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~--------------~~~~~~~~~-----~~~~l~i~~~ 67 (207)
.+.+....+.+|++++|.|...+ +.. .+.|||... .+. .....++.. ....|.|.++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 35567788899999999999877 444 899999542 111 000111211 1246999999
Q ss_pred CCCCCeeeEEEEee
Q psy10918 68 NRQSAGNYTCVGFN 81 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~ 81 (207)
+.+|+|.|+|.+.+
T Consensus 80 ~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 80 EPEDSAVYLCASSL 93 (110)
T ss_pred ChhhCEEEEEEeeC
Confidence 99999999999874
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=60.67 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=49.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccc---c-------ccccCCeEec----CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTL---H-------HNIAQGIIMT----NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~---~-------~~~~~~~~~~----~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|.+.+......+.|||.. ... . .....++... ...|+|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 4556677788999999999998765422379999843 111 0 0001122211 1249999999999
Q ss_pred CeeeEEEEee
Q psy10918 72 AGNYTCVGFN 81 (207)
Q Consensus 72 ~g~Y~C~~~~ 81 (207)
+|.|.|.+.+
T Consensus 83 sg~Y~Ca~~~ 92 (106)
T cd04980 83 AAVYYCQQYG 92 (106)
T ss_pred CEEEEEEEeC
Confidence 9999999864
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.1e-08 Score=56.37 Aligned_cols=69 Identities=22% Similarity=0.191 Sum_probs=50.0
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceee-------eccceeEEee-cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAET-------VNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+.+|+++.|.|.+.+.... .+.|++.+.... ....+..... .+....|.|.+++.+|+|.|.|.+..
T Consensus 7 vtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 7 VTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred eEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 356789999999999987665 788887664322 1122222222 34566799999999999999999986
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=58.53 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=45.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
....|.+|++|+|.|.... ... .+.|+|++....... ..........|.|.+++..|+|.|+|...
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 3456789999999998765 333 899999886533210 00001112368999999999999999975
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=59.20 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=49.3
Q ss_pred CCCcEEEEeEeccCC-----CCcEEEEEECCcc-------c-cc--------cccCCeEec-----CCeEEEEecCCCCC
Q psy10918 19 EDSDVYFDCDIVAVP-----PVYKVEWRHNNKT-------L-HH--------NIAQGIIMT-----NQSLVLQRVNRQSA 72 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~-----~~~~i~W~~~~~~-------~-~~--------~~~~~~~~~-----~~~l~i~~~~~~d~ 72 (207)
.|++++|.|.....+ ....+.|++.... + .. ....+.... ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999876542 2337999995411 0 00 001122221 23699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEE
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999998766644 445555554
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=55.70 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=47.0
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+..|..+.|.|...+..+ .+.|++++..+..+ .+......+ |.|..++..|+|.|.|.+..
T Consensus 6 ~tv~~g~~v~L~C~~~s~~A--~v~W~~ng~~l~~~-~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 6 RTVAPGADVVLPCQLRSNLA--SPVWLFNGTPLNAQ-FSYRVGTDG----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEecCCCEEEECCCCCCCc--cEEEEECCcccCCC-cceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence 45778999999999987643 99999999875432 222222222 66888999999999999873
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-08 Score=58.36 Aligned_cols=74 Identities=15% Similarity=0.336 Sum_probs=46.5
Q ss_pred CcEEEEeEeccCC--CCcEEEEEECCcc----c--c---------ccccCCeEe-----cCCeEEEEecCCCCCeeeEEE
Q psy10918 21 SDVYFDCDIVAVP--PVYKVEWRHNNKT----L--H---------HNIAQGIIM-----TNQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 21 ~~v~l~C~~~~~~--~~~~i~W~~~~~~----~--~---------~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~ 78 (207)
++++|.|...... ....+.|+|.... + . .....+... ...+|+|.+++..|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999986644 3347999996532 0 0 000111111 235799999999999999999
Q ss_pred Eee-eCCCCccceEEEEE
Q psy10918 79 GFN-IEGDGESNAFFLNV 95 (207)
Q Consensus 79 ~~~-~~~~~~~~~~~l~v 95 (207)
+.. +.|.. ...+.|.|
T Consensus 81 v~~~~~g~~-~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNR-QKVTTLTV 97 (98)
T ss_pred EEeCCCCcE-EEEEEEEe
Confidence 874 34443 44555555
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-08 Score=57.87 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=50.3
Q ss_pred eCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccceeEEeecC-c---eEEEEEecCCCCCC-e
Q psy10918 97 YSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQAHILRSG-T---LSVVAYSPNSELDY-G 170 (207)
Q Consensus 97 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~~~-g 170 (207)
.+|..+...........|+.++|.|.+.+..+ ...++|++||..+...........++ . .+.|.+.. ...|. .
T Consensus 4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~ 82 (111)
T cd05772 4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHS 82 (111)
T ss_pred cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccC
Confidence 44554444433333456788999999999644 57999999998754322211111222 2 33455543 33343 4
Q ss_pred EEEEEEecCCCC
Q psy10918 171 TLICWGSNKIGH 182 (207)
Q Consensus 171 ~y~C~~~n~~g~ 182 (207)
.|+|.+.+....
T Consensus 83 ~ytC~V~H~~l~ 94 (111)
T cd05772 83 QVTCEVQHRTLQ 94 (111)
T ss_pred ceEEEEEeCCCC
Confidence 599999986543
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=58.95 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=49.4
Q ss_pred CCCcEEEEeEeccCC-----CCcEEEEEECC---c-c--cc--ccc--------cCCeE-----ecCCeEEEEecCCCCC
Q psy10918 19 EDSDVYFDCDIVAVP-----PVYKVEWRHNN---K-T--LH--HNI--------AQGII-----MTNQSLVLQRVNRQSA 72 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~-----~~~~i~W~~~~---~-~--~~--~~~--------~~~~~-----~~~~~l~i~~~~~~d~ 72 (207)
.|++++|.|.....+ ....+.|++.. . . +. ... ..+.. ....+|+|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999986542 23489999962 1 0 10 000 00111 1235699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEE
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDE-QDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCce-EEEEEEEEE
Confidence 99999998764433 455666664
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=58.90 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=47.3
Q ss_pred CCCcccCCCcEEEEeEeccCC---CCcEEEEEE---------------CCcccccc-c--cCCeE------ecCCeEEEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP---PVYKVEWRH---------------NNKTLHHN-I--AQGII------MTNQSLVLQ 65 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~---------------~~~~~~~~-~--~~~~~------~~~~~l~i~ 65 (207)
....+..|++++|.|...... ....+.|.+ ++...... . ..+.. ..+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345677899999999985532 223899933 22222100 0 01111 123579999
Q ss_pred ecCCCCCeeeEEEEeeeCCC
Q psy10918 66 RVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+++..|+|.|+|.+.|+.+.
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred cCCcccCEEEEEEEEcCCCc
Confidence 99999999999999987653
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=57.96 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=50.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC---CcEEEEEEC----Ccc--cc---cc----c--c--CCeE------ecCCeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHN----NKT--LH---HN----I--A--QGII------MTNQSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~----~~~--~~---~~----~--~--~~~~------~~~~~l~i~~ 66 (207)
....+.+|++++|.|.....+. ...+.|++. +.+ +. .. . . .+.. ..+.+|+|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 4566789999999998754321 226999752 111 10 00 0 0 0111 1234699999
Q ss_pred cCCCCCeeeEEEEeeeCCCCc-cceEEEE
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGE-SNAFFLN 94 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~-~~~~~l~ 94 (207)
++.+|+|.|.|.+.+..+... ...+.|+
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred CChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999997665422 3344444
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=57.50 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=50.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCce--eee-----------ccceeEEee--cCceEEEEEecCCCCCCeEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSA--ETV-----------NVAQAHILR--SGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y 172 (207)
...+.+|+.+.|.|.+.+.+.. .+.|++.... ... ...+..+.. ......|.|.+++.+|+|.|
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 3457799999999999877554 9999985321 000 011122222 23567799999999999999
Q ss_pred EEEEecCC
Q psy10918 173 ICWGSNKI 180 (207)
Q Consensus 173 ~C~~~n~~ 180 (207)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99999754
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=57.38 Aligned_cols=76 Identities=20% Similarity=0.377 Sum_probs=48.5
Q ss_pred CCcEEEEeEeccCCC---------CcEEEEEECC--cccc-----c-------cccCCeEe-------cCCeEEEEecCC
Q psy10918 20 DSDVYFDCDIVAVPP---------VYKVEWRHNN--KTLH-----H-------NIAQGIIM-------TNQSLVLQRVNR 69 (207)
Q Consensus 20 g~~v~l~C~~~~~~~---------~~~i~W~~~~--~~~~-----~-------~~~~~~~~-------~~~~l~i~~~~~ 69 (207)
|++++|.|.....+. ...+.|++.. .... . .-..+... ...+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 889999999865331 2489999952 1110 0 00012211 224699999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|+|.|.|.+....... ...+.|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~-~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDE-QDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence 99999999998654333 445666665
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=59.18 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=45.4
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCcc--cc-------------ccccCCeE--e----cCCeEEEEecCCCCCe
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKT--LH-------------HNIAQGII--M----TNQSLVLQRVNRQSAG 73 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~--~~-------------~~~~~~~~--~----~~~~l~i~~~~~~d~g 73 (207)
.+.+|++++|.|.+... +.. .+.|++.... .. .....++. . ...+|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcc-eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 46789999999998875 444 8999995431 10 00011111 1 1236999999999999
Q ss_pred eeEEEEeeeC
Q psy10918 74 NYTCVGFNIE 83 (207)
Q Consensus 74 ~Y~C~~~~~~ 83 (207)
.|.|.+.+..
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999998654
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.5e-08 Score=56.17 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=49.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcE--EEEEECCccccccccC----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYK--VEWRHNNKTLHHNIAQ----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~--i~W~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+..+.+|+.++|.|.+.+..+..+ |.||+++..+...... .......+|.+...+.+|...|+|.+.+..+.
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 44555789999999999977544435 7999999888652211 11122345777655555556999999976544
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=53.60 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=44.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC--ceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG--TLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.|.|.+.|..|+..|.|++++..+............+ ..+.|.+..-...|...|+|.|.|+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 67999999876656999999987754321110011111 35678887777778889999999976
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=57.14 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=49.9
Q ss_pred eCCcEEEEEEeccCC-----CCceEEEEEcCce---e---eecc-c--------eeEEee---cCceEEEEEecCCCCCC
Q psy10918 113 RQEKVNISCEVDANP-----PDVKFSWTFNNSA---E---TVNV-A--------QAHILR---SGTLSVVAYSPNSELDY 169 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~---~---~~~~-~--------~~~~~~---~~~~~~l~i~~~~~~~~ 169 (207)
.|+.++|.|.....| ....+.|++.... . .... . ..+... ......|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999887653 2347999985321 0 0000 0 011111 12245799999999999
Q ss_pred eEEEEEEecCCCCCccceEEEE
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred EEEEEEEEecccceEEEEEEEE
Confidence 9999999997776654444433
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=60.21 Aligned_cols=85 Identities=21% Similarity=0.430 Sum_probs=57.5
Q ss_pred CCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccc----------cccCCeEe-----cCCeEEEEecCCCCCeeeE
Q psy10918 13 NPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHH----------NIAQGIIM-----TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~----------~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~ 76 (207)
...+|.+|++++|.|... +...+ ++.|+|....+.. ....++.. ...+|+|.+++.+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSI-LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccc-eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 345688999999999974 44444 8999996432211 01112222 4567999999999999999
Q ss_pred EEEee-eCCCCccceEEEEEEeC
Q psy10918 77 CVGFN-IEGDGESNAFFLNVMYS 98 (207)
Q Consensus 77 C~~~~-~~~~~~~~~~~l~v~~~ 98 (207)
|.... +.|...+...-|+|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99873 33434466667777743
|
|
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=55.68 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=45.7
Q ss_pred CcEEEEeEeccCC--CCcEEEEEECCcc-----c---cc--c--------ccCCeEe----cCCeEEEEecCCCCCeeeE
Q psy10918 21 SDVYFDCDIVAVP--PVYKVEWRHNNKT-----L---HH--N--------IAQGIIM----TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 21 ~~v~l~C~~~~~~--~~~~i~W~~~~~~-----~---~~--~--------~~~~~~~----~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+++|.|...... ....+.|++.... + .. . ++..+.. .+.+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999885433 2237999984311 0 00 0 0111111 1346999999999999999
Q ss_pred EEEee-eCCCCccceEEEEE
Q psy10918 77 CVGFN-IEGDGESNAFFLNV 95 (207)
Q Consensus 77 C~~~~-~~~~~~~~~~~l~v 95 (207)
|.+.+ +.|.. ...+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99986 44443 55666665
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=56.06 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred eCCcEEEEEEeccCC-----CCceEEEEEcC---cee---ee-ccce--------eEEe---ecCceEEEEEecCCCCCC
Q psy10918 113 RQEKVNISCEVDANP-----PDVKFSWTFNN---SAE---TV-NVAQ--------AHIL---RSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~---~~~---~~-~~~~--------~~~~---~~~~~~~l~i~~~~~~~~ 169 (207)
.|+.++|.|.....+ ....+.|++.. ... .. .... .+.. .......|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999987653 23599999862 110 00 0000 1111 122456799999999999
Q ss_pred eEEEEEEecCCCCCccceEEEE
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEE
Confidence 9999999987665544444443
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-07 Score=56.63 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=47.0
Q ss_pred cCCCcccCCCcEEEEeEeccCC---CCcEEEEEECCc------ccc---cc-----ccCC----eEe------cCCeEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHNNK------TLH---HN-----IAQG----IIM------TNQSLVL 64 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~------~~~---~~-----~~~~----~~~------~~~~l~i 64 (207)
+....+.+|++++|.|...... ....+.|++... .+. .. .... ... ...+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3455678999999999885432 113699987321 000 00 0001 111 1246999
Q ss_pred EecCCCCCeeeEEEEeeeCCC
Q psy10918 65 QRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.+++.+|+|.|.|.+.+....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999876553
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=56.01 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCcEEEEeEeccC--CCCcEEEEEECCc--ccc--cc-----------ccCCeEe-------cCCeEEEEecCCCCCeee
Q psy10918 20 DSDVYFDCDIVAV--PPVYKVEWRHNNK--TLH--HN-----------IAQGIIM-------TNQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 20 g~~v~l~C~~~~~--~~~~~i~W~~~~~--~~~--~~-----------~~~~~~~-------~~~~l~i~~~~~~d~g~Y 75 (207)
|++++|.|..... .....+.|++... .+. .. ...+... ...+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7889999997532 2223688988542 110 00 0011111 124699999999999999
Q ss_pred EEEEeeeCCCCccceEEEEE
Q psy10918 76 TCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 76 ~C~~~~~~~~~~~~~~~l~v 95 (207)
+|.+.+..+. ....+.|+|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999876554 243444544
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-08 Score=56.83 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=48.2
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc--eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA--QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.|..+.|.|.+.+. |.++.+.|+++|..+..... ......++. .+.|.+......+.+.|+|.|.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 57899999999998 55569999999877543321 111222333 234666666666999999999987654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-07 Score=54.70 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=52.6
Q ss_pred eeeeeeCCcEEEEEEeccCC---CCceEEEEEc---------------Cceeeecc----ceeEEe--ecCceEEEEEec
Q psy10918 108 VLGVARQEKVNISCEVDANP---PDVKFSWTFN---------------NSAETVNV----AQAHIL--RSGTLSVVAYSP 163 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~---------------~~~~~~~~----~~~~~~--~~~~~~~l~i~~ 163 (207)
...+..|+.+.|.|...... ....+.|.+. +....... .+..+. .......+.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 34567899999999987642 2349999542 11110000 011111 112345689999
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
++.+|.|.|+|.+.|..+.......+.+.
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 99999999999999987655444444443
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=56.22 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.6
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeee-------------c--cceeEEeec-CceEEEEEecCCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETV-------------N--VAQAHILRS-GTLSVVAYSPNSELDY 169 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~-------------~--~~~~~~~~~-~~~~~l~i~~~~~~~~ 169 (207)
...+.+|+.++|.|...+ +.+ .+.|++... .... . ..+...... .....|.|.+++.+|+
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 345779999999999987 544 899998532 1110 0 011112222 2456799999999999
Q ss_pred eEEEEEEecCC
Q psy10918 170 GTLICWGSNKI 180 (207)
Q Consensus 170 g~y~C~~~n~~ 180 (207)
|.|.|.+.+..
T Consensus 85 g~Y~Ca~~~~~ 95 (110)
T cd05899 85 AVYLCASSLGG 95 (110)
T ss_pred EEEEEEeeCCC
Confidence 99999998753
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-07 Score=54.92 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=50.7
Q ss_pred eCCcEEEEEEeccCCC-----------CceEEEEEcC--ceee-e--cc----------ceeEEee---cCceEEEEEec
Q psy10918 113 RQEKVNISCEVDANPP-----------DVKFSWTFNN--SAET-V--NV----------AQAHILR---SGTLSVVAYSP 163 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~-----------~~~~~W~~~~--~~~~-~--~~----------~~~~~~~---~~~~~~l~i~~ 163 (207)
.|++++|.|....... ...|.|++.. .... + .. .+..+.. ......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 3789999998875421 2499999842 1110 0 00 1111211 22456799999
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
++.+|+|.|.|.+.+.+... +..+.+.+.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~--~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN--YDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCc--eeEEEEEEEe
Confidence 99999999999999766555 4445555544
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.3e-08 Score=56.94 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=42.8
Q ss_pred cccCCCcEEEEeEeccC--CCCcEEEEEECCc--ccc------c----cccCCeEe----cCCeEEEEecCCCCCeeeEE
Q psy10918 16 HIKEDSDVYFDCDIVAV--PPVYKVEWRHNNK--TLH------H----NIAQGIIM----TNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~--~~~------~----~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C 77 (207)
.+.+|++++|.|..... ... .+.||+... ... . ....++.. ....|+|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 46789999999998654 333 799998432 110 0 00112211 12359999999999999999
Q ss_pred EEee
Q psy10918 78 VGFN 81 (207)
Q Consensus 78 ~~~~ 81 (207)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9864
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=53.63 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=28.6
Q ss_pred CeEEEEecCCCCCeeeEEEEee-eCCCCccceEEEEE
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFN-IEGDGESNAFFLNV 95 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~~~~l~v 95 (207)
.+|.|.+++..|+|.|.|.+.+ +.|. .+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 6799999999999999999998 4553 455666766
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=54.68 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=50.8
Q ss_pred eCCcEEEEEEecc-CCCCceEEEEEcCceeeeccc--------------eeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 113 RQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVA--------------QAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 113 ~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.|++++|.|.... ... ..+.|++.......... ..+...+.....|.|.+++.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~-~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEI-ESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEE-EEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 6899999998765 333 48999986432211110 0123333444679999999999999999999
Q ss_pred cCCCCCccceEEEEe
Q psy10918 178 NKIGHQRVPCVFHIV 192 (207)
Q Consensus 178 n~~g~~~~~~~~~v~ 192 (207)
+..|.. ....+.+.
T Consensus 82 ~~~~~~-~~~~f~L~ 95 (97)
T cd05775 82 TKNGVT-ITKEFTLH 95 (97)
T ss_pred cCCCCe-EEEEEEEE
Confidence 877543 34444443
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=53.98 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=47.5
Q ss_pred CcEEEEEEeccCC--CCceEEEEEcCce--eee------------ccceeEEeecC---ceEEEEEecCCCCCCeEEEEE
Q psy10918 115 EKVNISCEVDANP--PDVKFSWTFNNSA--ETV------------NVAQAHILRSG---TLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 115 ~~~~l~C~~~~~~--~~~~~~W~~~~~~--~~~------------~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~C~ 175 (207)
+.++|.|.....+ ....+.|++.... ... .....+....+ ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999887654 3348999986431 000 00011111111 345799999999999999999
Q ss_pred Eec-CCCCCccceEEEE
Q psy10918 176 GSN-KIGHQRVPCVFHI 191 (207)
Q Consensus 176 ~~n-~~g~~~~~~~~~v 191 (207)
+.+ +.|.......+.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 4566655544443
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.2e-08 Score=59.08 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=49.5
Q ss_pred eeeecCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCc-----ccc---cc---------ccCCe--Eec----CCeEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNK-----TLH---HN---------IAQGI--IMT----NQSLV 63 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~-----~~~---~~---------~~~~~--~~~----~~~l~ 63 (207)
+..++....+.+|+++.|.|... ..... .+.|++... .+. .. ...+. ... ..+|.
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 33456777889999999999988 33433 899999432 111 00 00011 111 12599
Q ss_pred EEecCCCCCeeeEEEEeee
Q psy10918 64 LQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~ 82 (207)
|.+++..|+|.|.|.+...
T Consensus 83 i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESSESGGGEEEEEEEEEES
T ss_pred ECCCCcCcCEEEEEEEEEC
Confidence 9999999999999999865
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.4e-07 Score=54.22 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=49.8
Q ss_pred eCCcEEEEEEeccCCC---------CceEEEEEcC--ceeeec---cce--------eEEe-----ecCceEEEEEecCC
Q psy10918 113 RQEKVNISCEVDANPP---------DVKFSWTFNN--SAETVN---VAQ--------AHIL-----RSGTLSVVAYSPNS 165 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~---------~~~~~W~~~~--~~~~~~---~~~--------~~~~-----~~~~~~~l~i~~~~ 165 (207)
.|++++|.|.....+. ...+.|++.. +....- ... .+.. .......|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 4789999998876432 2589999852 211100 000 1111 12345679999999
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
.+|+|.|.|.+..........+.|.|
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 99999999999986555544544443
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-07 Score=53.79 Aligned_cols=75 Identities=11% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCcEEEEEEeccC--CCCceEEEEEcCceeee---cc-------------ceeEEee---cCceEEEEEecCCCCCCeEE
Q psy10918 114 QEKVNISCEVDAN--PPDVKFSWTFNNSAETV---NV-------------AQAHILR---SGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 114 g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~---~~-------------~~~~~~~---~~~~~~l~i~~~~~~~~g~y 172 (207)
|+.+.|.|..... .....+.|++....... .. .+..+.. ..+...|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 5788999987532 12237888875421110 00 0111111 12345799999999999999
Q ss_pred EEEEecCCCCCccceE
Q psy10918 173 ICWGSNKIGHQRVPCV 188 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~ 188 (207)
+|.+.|..+.....+.
T Consensus 81 ~C~v~~~~~~~~~~i~ 96 (100)
T cd05713 81 TCFFQSDGFYEEATVE 96 (100)
T ss_pred EEEEecCCcEEEEEEE
Confidence 9999987665444433
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-07 Score=52.72 Aligned_cols=62 Identities=15% Similarity=0.355 Sum_probs=40.6
Q ss_pred CcEEEEeEeccCCCCcEEEEEECCc----ccc-----------ccccCCeEe-----cCCeEEEEecCCCCCeeeEEEEe
Q psy10918 21 SDVYFDCDIVAVPPVYKVEWRHNNK----TLH-----------HNIAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~~~i~W~~~~~----~~~-----------~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
++++|.|.........++.|.|... .+. ..-..+... .+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4689999986544445889988532 110 000011111 24679999999999999999997
Q ss_pred ee
Q psy10918 81 NI 82 (207)
Q Consensus 81 ~~ 82 (207)
..
T Consensus 81 t~ 82 (96)
T cd05889 81 TY 82 (96)
T ss_pred eC
Confidence 54
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=73.44 Aligned_cols=175 Identities=15% Similarity=0.216 Sum_probs=102.8
Q ss_pred CCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEec----CCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 14 PDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
...+.+|+.+.|.|.+.+ .|.. .++|+++...+........... ...+.+..-..++.-...|.+.| .. .
T Consensus 215 ~qsF~~g~~inlvc~~~gg~P~~-~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~---~ 289 (741)
T KOG3515|consen 215 QQSFTEGQTINLVCNAQGGNPSQ-QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL---A 289 (741)
T ss_pred cCcccccceEEEEehhhcCCcch-hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-cc---c
Confidence 356788999999997765 4555 8999998876654211111111 12344444444445566799887 11 2
Q ss_pred ceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecCc--eEEEEEecCC
Q psy10918 89 NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGT--LSVVAYSPNS 165 (207)
Q Consensus 89 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~--~~~l~i~~~~ 165 (207)
....+.+..++..............|+...+.|...+..++..+.|+++.....-......-. ..+. ...+......
T Consensus 290 ~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~ 369 (741)
T KOG3515|consen 290 ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS 369 (741)
T ss_pred cceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc
Confidence 233355566665554455555567888999998777665556999999544321111111100 0111 1224445677
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
..|.|.|.|.+.|.......+..+.+.+
T Consensus 370 ~~~~g~v~c~a~~~~~~~~sss~~~l~~ 397 (741)
T KOG3515|consen 370 QQDGGQVTCPADNLELAHSSSSSFLLPV 397 (741)
T ss_pred hhcCceEEccccccccccccccceeccc
Confidence 8899999999999886554454444443
|
|
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.7e-07 Score=50.65 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred EEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc----eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT----LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|.+.+. |++ .+.|+++++.+.... .......+. .+.|.+......+.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 5899999886 554 999999987754211 111111221 3346666566667789999999987543
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-07 Score=51.60 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=43.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecC---ceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSG---TLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+.|.|.+.+..|+..++|+++|..+.......... .++ ..+.|.+......+...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999999875557999999988753211111111 111 1345666666677788999999987643
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=56.13 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=46.1
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCcccccccc--CCeEecCC------eEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA--QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..|+.+.|.|.+.+. |....++|+++|..+..... ......++ .|.+......|.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999887 54458999999988865432 11112222 355555555699999999987543
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-07 Score=55.99 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=48.1
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEec------CCeEEEEecCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIMT------NQSLVLQRVNRQ 70 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~~------~~~l~i~~~~~~ 70 (207)
.+.+....+.+|++++|.|..........+.||+.. ..+. .....++... ..+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 355667778999999999997653223379999832 1110 0001122211 235999999999
Q ss_pred CCeeeEEEEee
Q psy10918 71 SAGNYTCVGFN 81 (207)
Q Consensus 71 d~g~Y~C~~~~ 81 (207)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999874
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-07 Score=54.64 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=47.9
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeee-c----------cceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETV-N----------VAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~-~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|+.+.|.|.+.+......+.|++... .... . ..+...........|.|.+++.+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 34567999999999997665234899997431 1100 0 011122223345679999999999999999
Q ss_pred EEecC
Q psy10918 175 WGSNK 179 (207)
Q Consensus 175 ~~~n~ 179 (207)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 99764
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-07 Score=50.85 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=43.6
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-c---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-T---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|.+.+..|+..|+|+++|..+...........++ . .+.|.+......+...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 68999999874435999999997654322111112222 1 2445565666778889999999987533
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=57.69 Aligned_cols=71 Identities=13% Similarity=0.355 Sum_probs=47.8
Q ss_pred eecCCCcccCCCcEEEEeEecc--CCCCcEEEEEECC--cccc------c---------cccCCeEe------cCCeEEE
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNN--KTLH------H---------NIAQGIIM------TNQSLVL 64 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~--~~~~------~---------~~~~~~~~------~~~~l~i 64 (207)
+.+....+.+|++++|.|.+.+ .+.. .+.||+.. .... . ....++.. ....|+|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 4456677888999999999866 4444 89999942 1110 0 00112221 1235999
Q ss_pred EecCCCCCeeeEEEEee
Q psy10918 65 QRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~ 81 (207)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999863
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.5e-07 Score=52.73 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeecc------c---------eeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNV------A---------QAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~------~---------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
|++++|.|........ .+.|+++........ . ..+...... ..|.|.+++.+|+|.|.|.+..
T Consensus 1 G~~VtL~c~~~~~~~~-~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQ-EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCE-EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEc
Confidence 6789999988765554 999998653321100 0 011111122 4699999999999999999998
Q ss_pred CCC
Q psy10918 179 KIG 181 (207)
Q Consensus 179 ~~g 181 (207)
..+
T Consensus 79 ~~~ 81 (92)
T cd05741 79 TNG 81 (92)
T ss_pred CCC
Confidence 764
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=55.52 Aligned_cols=65 Identities=15% Similarity=0.362 Sum_probs=42.4
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcc---c------c-c-c------c---cCCeEe--c--C--CeEEEEecCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT---L------H-H-N------I---AQGIIM--T--N--QSLVLQRVNR 69 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~---~------~-~-~------~---~~~~~~--~--~--~~l~i~~~~~ 69 (207)
.+.+|++++|.|..........+.||+.... . . . . . ..++.. . + ..|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 4678999999999865433337999984321 0 0 0 0 0 112211 1 1 2499999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-07 Score=52.89 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=45.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.+..|++++|.|.... ... .+.|+|+|.......... ....+....+.|.+++.+|+|.|.|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~~~~~-~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVLHLYE-KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCceeccc-ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 3568999999998765 443 899999887633211000 0112334568999999999999999975
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-07 Score=54.01 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=48.2
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce--ee-e-------------ccceeEEeecC--ceEEEEEecCCCCCCeEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA--ET-V-------------NVAQAHILRSG--TLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~-~-------------~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y 172 (207)
+.+|+.++|.|..........+.|++.... .. + ...+....... ....|.|.+++.+|+|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 568999999999987623349999985331 10 0 00111222222 456799999999999999
Q ss_pred EEEEecCCC
Q psy10918 173 ICWGSNKIG 181 (207)
Q Consensus 173 ~C~~~n~~g 181 (207)
.|.+.+..+
T Consensus 83 ~C~v~~~~~ 91 (105)
T cd00099 83 YCAVSLSGG 91 (105)
T ss_pred EEEEecCCC
Confidence 999998664
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-07 Score=51.52 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=40.3
Q ss_pred EEEEeEeccC-CCCcEEEEEECCccccccccCCeE-ecC------CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 23 VYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGII-MTN------QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 23 v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~-~~~------~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.|.|.+.+. |.+ ++.|++++..+.... .... ..+ +.|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999765 665 999999998876432 1111 112 23555554556677999999876543
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=52.44 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=47.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCC---CceEEEEEc---Ccee-ee---ccc-------e--eEEe----ecCceEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPP---DVKFSWTFN---NSAE-TV---NVA-------Q--AHIL----RSGTLSVVAYSP 163 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~---~~~~-~~---~~~-------~--~~~~----~~~~~~~l~i~~ 163 (207)
....+..|+.+.|.|.....++ ...+.|++. +... .. ... . .+.. .......|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 3456789999999998764332 236999852 1110 00 000 0 0110 112345699999
Q ss_pred CCCCCCeEEEEEEecCCCC
Q psy10918 164 NSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~ 182 (207)
++.+|+|.|.|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999987664
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.9e-07 Score=54.27 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=48.5
Q ss_pred ceeeeeeCCcEEEEEEecc--CCCCceEEEEEcC--ceee--e--------------ccceeEEeecC--ceEEEEEecC
Q psy10918 107 RVLGVARQEKVNISCEVDA--NPPDVKFSWTFNN--SAET--V--------------NVAQAHILRSG--TLSVVAYSPN 164 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~--~~~~~~~~W~~~~--~~~~--~--------------~~~~~~~~~~~--~~~~l~i~~~ 164 (207)
....+.+|+.++|.|...+ .+.+ .+.|++.. .... . ...+..+..+. ....|.|.++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 3445678999999999876 4555 89999852 2110 0 01122233333 4677999999
Q ss_pred CCCCCeEEEEEEec
Q psy10918 165 SELDYGTLICWGSN 178 (207)
Q Consensus 165 ~~~~~g~y~C~~~n 178 (207)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999975
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=7e-07 Score=52.96 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=46.5
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCc--eeee-c----------cceeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNS--AETV-N----------VAQAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~--~~~~-~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
+.+|+.+.|.|..... ... .+.|++... .... . ..+.....+.....|.|.+++.+|+|.|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 5689999999998764 333 799998432 1110 0 0122233344566799999999999999999
Q ss_pred EecC
Q psy10918 176 GSNK 179 (207)
Q Consensus 176 ~~n~ 179 (207)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 9863
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=49.91 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=40.7
Q ss_pred EEEEeEeccC-CCCcEEEEEECCccccccccCCeEe-------cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 23 VYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIM-------TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 23 v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+.|.|.+.+. |.. .|+|+++|..+.......... ....|.|.....+|...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999875 665 999999998876532111111 112355555556677899999987653
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.4e-07 Score=50.70 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=40.6
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCe-------EecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-------IMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
++|.|.+.+..++..++|+++|..+........ ....+.|.+.....++...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999987433359999999998764321111 1112346666555667789999998764
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=51.49 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+.+|.|.+++..|+|.|.|.+.+..... ...+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 4579999999999999999998765444 445666654
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-07 Score=52.81 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCcee------eecc------------ceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAE------TVNV------------AQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~------~~~~------------~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
.+.+|+.+.|.|....... ..+.|+|..... .... .+..+..++ .|.|.+++.+|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~-~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~ 84 (105)
T cd05774 9 QVAEGENVLLLVHNLPENL-LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF 84 (105)
T ss_pred cccCCCCEEEEecCCCCCc-eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence 3568999999986543333 399999953211 0000 111122222 48999999999999
Q ss_pred EEEEEecCCC
Q psy10918 172 LICWGSNKIG 181 (207)
Q Consensus 172 y~C~~~n~~g 181 (207)
|+|.+.+...
T Consensus 85 Y~~~v~~~~~ 94 (105)
T cd05774 85 YTLQTITTNF 94 (105)
T ss_pred EEEEEEeCCc
Confidence 9999998763
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-06 Score=50.39 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=47.6
Q ss_pred ceeeeeeCCcEEEEEEeccCC---CCceEEEEEcCce----ee---ec--------cc----eeEEee--cCceEEEEEe
Q psy10918 107 RVLGVARQEKVNISCEVDANP---PDVKFSWTFNNSA----ET---VN--------VA----QAHILR--SGTLSVVAYS 162 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~----~~---~~--------~~----~~~~~~--~~~~~~l~i~ 162 (207)
....+..|+.++|.|...... ....+.|++.... .. .. .. +..+.. ......|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 344567999999999886432 1237999863220 00 00 00 000111 1223569999
Q ss_pred cCCCCCCeEEEEEEecCCCC
Q psy10918 163 PNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~ 182 (207)
+++.+|+|.|.|.+.|....
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eCCcccCEEEEEEEEeCCCC
Confidence 99999999999999987654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=51.31 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=47.9
Q ss_pred eeeCCcEEEEEEeccCCCCce--EEEEEcCceeeeccceeE-EeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEVDANPPDVK--FSWTFNNSAETVNVAQAH-ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~--~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.+|+.++|.|.+.+..+... +.|++++..+........ .......+++.+...+.+|...|+|.|.+..+..
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 568999999999998654335 799998876532211000 0111224567776666666669999999877654
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.4e-07 Score=53.51 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=44.6
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeecccee--EEeecCce---EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQA--HILRSGTL---SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..+..+.|.|.+.+. |..+.+.|+++|..+....... ....+++. +.|.+..-...+...|+|.+.....
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 356779999999996 5467999999988753221111 11223432 3354544444457799999998653
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-06 Score=49.63 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=47.7
Q ss_pred cEEEEEEeccCCCCceEEEEEcCce--eeecc--------------ceeEEe-ecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSA--ETVNV--------------AQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~--~~~~~--------------~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.++|.|.....+....+.|.|.... ..+.. .+.... .......|.|.+++.+|.|.|+|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 5789998875544458999884321 11100 011111 122345799999999999999999865
Q ss_pred -CCCCCccceEEEE
Q psy10918 179 -KIGHQRVPCVFHI 191 (207)
Q Consensus 179 -~~g~~~~~~~~~v 191 (207)
+.|+...+..+.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 4577666655544
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=52.51 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=46.6
Q ss_pred CCcEEEEeEeccCC------CCcEEEEEECC-----ccc----cccc--------cCCeEe-------cCCeEEEEecCC
Q psy10918 20 DSDVYFDCDIVAVP------PVYKVEWRHNN-----KTL----HHNI--------AQGIIM-------TNQSLVLQRVNR 69 (207)
Q Consensus 20 g~~v~l~C~~~~~~------~~~~i~W~~~~-----~~~----~~~~--------~~~~~~-------~~~~l~i~~~~~ 69 (207)
|++++|.|...-.| ....+.|.+.. ... ..+. ..+... ...+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999964221 23489999841 110 0000 001111 134699999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+|+|.|.|.+..... .....+.|+|.
T Consensus 82 ~D~G~Y~C~v~~g~~-~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGIN-DEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 999999999987543 22445666654
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=50.14 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=46.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCcee--eec---c-----------ceeEE-eecCceEEEEEecCCCCCCeEEEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAE--TVN---V-----------AQAHI-LRSGTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~--~~~---~-----------~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
|+.++|.|..........+.|++..... .+. . .+... ........|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999986654333479999853210 000 0 00011 11223567999999999999999998
Q ss_pred ecC-CCCCccceEEE
Q psy10918 177 SNK-IGHQRVPCVFH 190 (207)
Q Consensus 177 ~n~-~g~~~~~~~~~ 190 (207)
... .|..+....|+
T Consensus 81 ~~~p~g~~~~~~~L~ 95 (97)
T cd05846 81 NTFPDGSKSGTMCLT 95 (97)
T ss_pred EeCCCCCeeeEEEEE
Confidence 753 45543333333
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.5e-06 Score=49.94 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=47.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCcee---ee---------ccceeEEe--ecCceEEEEEecCCCCCCeEEEEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAE---TV---------NVAQAHIL--RSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~---~~---------~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
.+.+|++++|.|..........+.|++..... .+ ...+..+. .......|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 35789999999988754333489999854221 00 00112221 223456799999999999999999
Q ss_pred EecCC
Q psy10918 176 GSNKI 180 (207)
Q Consensus 176 ~~n~~ 180 (207)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 98754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-06 Score=47.02 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=40.7
Q ss_pred EEEEEEeccC-CCCceEEEEEcCceeeeccceeEEe--ecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHIL--RSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
++|.|.+.+. |+.+.+.|+++|..+.......... .++. .+.|.+......+...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999997 5546999999987532221111111 2333 2345555446667789999998754
|
|
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=51.25 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=43.4
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcccc-----------ccccCCeEe--c----CCeEEEEecCCCCCeeeEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH-----------HNIAQGIIM--T----NQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~-----------~~~~~~~~~--~----~~~l~i~~~~~~d~g~Y~C~ 78 (207)
.+.+|++++|.|..........+.|++...... .....++.. . ...|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 457899999999976532223789998542110 000111211 1 13599999999999999999
Q ss_pred Eeee
Q psy10918 79 GFNI 82 (207)
Q Consensus 79 ~~~~ 82 (207)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8753
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-06 Score=50.77 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=45.1
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce---e--e----ec------------cceeEE--eecCceEEEEEecCCCC
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA---E--T----VN------------VAQAHI--LRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~---~--~----~~------------~~~~~~--~~~~~~~~l~i~~~~~~ 167 (207)
+.+|+.++|.|..........+.|++.... . . .. ..+... ........|.|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 82 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE 82 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence 568999999999876433338999984321 0 0 00 011111 22334567999999999
Q ss_pred CCeEEEEEEec
Q psy10918 168 DYGTLICWGSN 178 (207)
Q Consensus 168 ~~g~y~C~~~n 178 (207)
|+|.|.|...+
T Consensus 83 Dsg~YyCa~~~ 93 (107)
T cd07700 83 DSGTYFCMTVG 93 (107)
T ss_pred HCEEEEEeEcC
Confidence 99999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-06 Score=47.96 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
++.+.|.|.+.|. |+++.+.|.+++............. .++.........+...+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 5689999999996 5557999999985322221111222 233333333334555688999999998654
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=47.42 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=45.1
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEee--cCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.|+.++|.|.+.+. |..+.+.|+++|..+........... +++.+......+...+...|+|.+......
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 56789999999996 55679999999887543211112222 333333333344556677999999986544
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=48.72 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 155 TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 155 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
+...|.|.+++.+|+|.|.|.+....... ...+.+.+.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~--~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDE--QDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCccc--EEEEEEEEEE
Confidence 35679999999999999999999855444 4445444443
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=47.33 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=40.5
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc-CCe-EecCCeEEE---EecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA-QGI-IMTNQSLVL---QRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~-~~~-~~~~~~l~i---~~~~~~d~g~Y~C~~~~~ 82 (207)
..|+.++|.|.+.+ +|....+.|++||..+..... ... ...++++.+ ..+...+...|.|.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 46888999999988 465568999999988765311 111 111222221 123345667899998864
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=47.73 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCCCeEEEEEEec-CCCCC
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSN-KIGHQ 183 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n-~~g~~ 183 (207)
...|.|.+++.+|+|.|.|.+.+ +.|..
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF 91 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe
Confidence 45699999999999999999998 45554
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=48.96 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=43.4
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCceee-eccceeEEeecCce---EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNSAET-VNVAQAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+..|+.++|.|.+.+. |+.+.++|.++++... ..........+++. +.|.+..-.+.+.-.|+|.+.....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4567899999999998 6678999999875321 11111112223332 2344433333345679999998654
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.6e-06 Score=50.12 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=47.7
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeeec-----------cceeEEe--ecCceEEEEEecCCCCCCeEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETVN-----------VAQAHIL--RSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~~~g~y 172 (207)
...+..|+.+.|.|..........+.|++... ....- ..+..+. .......|.|.+++.+|+|.|
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 34567999999999987543334899998421 11100 0112222 123456799999999999999
Q ss_pred EEEEecC
Q psy10918 173 ICWGSNK 179 (207)
Q Consensus 173 ~C~~~n~ 179 (207)
.|.+...
T Consensus 88 ~C~~~~~ 94 (116)
T cd07706 88 FCALSTL 94 (116)
T ss_pred EEEEECC
Confidence 9999853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-05 Score=47.34 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=28.0
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
...|.|.+++.+|+|.|.|.+.+........+.+.|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 467999999999999999999987665544444433
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=47.03 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.8
Q ss_pred EEEEEecCCCCCCeEEEEEEec-CCCCCccceEEE
Q psy10918 157 SVVAYSPNSELDYGTLICWGSN-KIGHQRVPCVFH 190 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~~~~~~ 190 (207)
..|.|.+++.+|.|.|.|.+.+ +.|..+..+.|.
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~ 97 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLT 97 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 5689999999999999999999 567654444443
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.2e-06 Score=48.99 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=43.3
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc--eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA--QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+..+.|.|.+.+. |..+.+.|.++|..+..... ......++. .+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 34568999999995 55689999999876422211 111222232 233445444444667999999986543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-06 Score=49.46 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=43.8
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCceeeeccceeEEeecCce---EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNSAETVNVAQAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+..++|.|.+.+. |.++.+.|.++|.. ...........++.. +.|.+..-.+.....|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3457789999999985 45689999998875 111111112223433 3455544344555679999998764
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.8e-06 Score=46.83 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=44.3
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE--eecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI--LRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..+.|.|.+.+. |..+.+.|++++..+......... ..++..+......+...+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999985 557799999998765433222222 2344433222223336667789999997654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-06 Score=49.63 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=42.9
Q ss_pred cccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-C-eEecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-G-IIMTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~-~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
....++.++|.|.+.+ +|....+.|++||..+...... . ....++ .|.+......+...|.|.+.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 3445778999999987 4645689999999987532111 1 111122 24444444445679999998643
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=98.26 E-value=9e-06 Score=45.56 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=37.9
Q ss_pred EEEEeEeccC-CCCcEEEEEECCccccccccC-CeE-ecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 23 VYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ-GII-MTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 23 v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~-~~~-~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
++|.|.+.+. |...++.|++||.++...... ... ..+ +.|.|......+...|+|.+.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999885 554589999999864432111 111 112 23555554556778999999754
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=48.40 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=44.5
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce----eee----cc-------------ceeEEeecCceEEEEEecCCCCCC
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA----ETV----NV-------------AQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~----~~~----~~-------------~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
+..|+.++|.|........ .+.|++.... ... .. .+...........|.|.+++.+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 4689999999988654343 8999984322 100 00 011112233456799999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999874
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-06 Score=45.63 Aligned_cols=60 Identities=28% Similarity=0.569 Sum_probs=42.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccc------cCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNI------AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.|.|.+.+.+.. .+.|++++....... ..........|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCC-cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4689999885554 999999876654322 11122333569999999999999999997654
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=44.47 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=46.1
Q ss_pred CCcccCCCcEEEEeEeccCCC-CcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
...+..|++++|+|.....+. ...++|...+..... .....+.+|.+..+...|+|.++|.+..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----ILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----eccCCccEEEeceeCcccCCEEEEEEEE
Confidence 345778999999999855322 238999875543221 1113457899999999999999999963
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=48.63 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=44.1
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--c-c--c---cc---------cccCCeEe---c-CC--eEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--K-T--L---HH---------NIAQGIIM---T-NQ--SLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~-~--~---~~---------~~~~~~~~---~-~~--~l~i~~ 66 (207)
+....+.+|++++|.|...... .. .+.||+-. . + + .. ....++.. . .. .|+|.+
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~-~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSY-GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccc-eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 3456678899999999875432 23 68999832 1 1 1 00 00112211 1 12 599999
Q ss_pred cCCCCCeeeEEEEee
Q psy10918 67 VNRQSAGNYTCVGFN 81 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~ 81 (207)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998763
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-05 Score=45.14 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=44.6
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEee--cCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|....|.|.+.+. |..+.+.|.+||..+. ......... +++........+...+...|.|.+....
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 45667899999995 6678999999998765 433222333 3333333333455667788999999754
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=49.98 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=39.7
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCccccc------ccc--CCeEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHH------NIA--QGIIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~------~~~--~~~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.+|+.+.|.|.+.+. |...+|.|++++..... ... ......+ +.|.+......+.+.|.|.+.+.
T Consensus 51 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 51 MIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 368889999999885 44348999999854221 000 0011112 23555554445577999999754
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=45.88 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-cCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
|+.+.+.|.+.+..|++.+.|+.++.............. .+. .+.|.+......+...|+|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 569999997776544459999999877621111111112 222 345777655566778999999987543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=49.45 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=44.6
Q ss_pred cCCCcccCCCcEEEEeEeccCC-----CCcEEEEEECCcc------cc--c-------cccCCeEe----c--CCeEEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP-----PVYKVEWRHNNKT------LH--H-------NIAQGIIM----T--NQSLVLQ 65 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~-----~~~~i~W~~~~~~------~~--~-------~~~~~~~~----~--~~~l~i~ 65 (207)
+....+.+|++|+|.|...... ....+.||+.... +. . ....++.. . +..|+|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4456778899999999864321 1226899985321 10 0 00012211 1 2359999
Q ss_pred ecCCCCCeeeEEEEee
Q psy10918 66 RVNRQSAGNYTCVGFN 81 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~ 81 (207)
+++..|+|.|.|.+..
T Consensus 86 ~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 86 DAQPEDSGKYFFRVEL 101 (119)
T ss_pred cCChhhCeEEEEEEEc
Confidence 9999999999999864
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-05 Score=45.67 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE--eecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI--LRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+...+|.|.+.|+ |..+.+.|.++|..+......... ..+++........+...+...|+|.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 4567999999995 667899999998875432221122 223332222222333456678999998754
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=48.04 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=41.2
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeE-ec------CCeEEEEecCCCCCe-eeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGII-MT------NQSLVLQRVNRQSAG-NYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~-~~------~~~l~i~~~~~~d~g-~Y~C~~~~~~ 83 (207)
++..|+.++|.|.+.+. |....++|++||..+......... .+ .+.|.+.. ...|.+ .|.|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 34568889999999874 544599999999987642211111 11 12244443 334434 5999998653
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-05 Score=44.30 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=41.9
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeE-ecCCeEEEE---ecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGII-MTNQSLVLQ---RVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~l~i~---~~~~~d~g~Y~C~~~~~ 82 (207)
..|...+|.|.+.+ +|....++|++||..+......... ..+.++.+. .+...+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 34677799999988 5666689999999887621111111 222333332 34567788999999863
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.4e-05 Score=48.14 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=47.2
Q ss_pred eeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeecc-----------ceeE-EeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 109 LGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNV-----------AQAH-ILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~-----------~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
..+.+|+++.|.|... +...+ .+.|+|.......-. .+.. +......+.|.|.+++.+|+|.|.|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSI-LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccc-eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 4567899999999975 43444 999998643221100 1111 12222356799999999999999999
Q ss_pred EecC
Q psy10918 176 GSNK 179 (207)
Q Consensus 176 ~~n~ 179 (207)
...-
T Consensus 104 F~tf 107 (189)
T PHA02987 104 FNTL 107 (189)
T ss_pred EEec
Confidence 9864
|
|
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=47.37 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=39.9
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCce-EEEEEecCCCC-CCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGTL-SVVAYSPNSEL-DYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~-~~g~y~C~~~n~~ 180 (207)
.+..++|.|.+.+. |..+.+.|.++|.....+........++.. .......+... ....|+|.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 45678999999995 667899999998764332221222223322 11111223333 3345999999743
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.8e-05 Score=45.00 Aligned_cols=64 Identities=14% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCcEEEEeEeccC-CCCcEEEEEECCccccccc-cCCeE-ecCCeEE---EEecCCCCCeeeEEEEeeeC
Q psy10918 20 DSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNI-AQGII-MTNQSLV---LQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 20 g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~-~~~~~-~~~~~l~---i~~~~~~d~g~Y~C~~~~~~ 83 (207)
|+.++|.|.+.+. |....++|++++..+.... ..... ..++++. ...+...+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999984 6555899999986332211 11111 1222222 22344458899999998653
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.6e-06 Score=49.43 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=44.9
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeec-Cc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRS-GT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~-~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
.+..++|.|.+.+. |..+.+.|++|+..+...... .....+ +. .+.|.+...+..+ ...|+|.+........
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 45678999999996 445799999998765422111 111111 22 2345554443333 5689999998765554
Q ss_pred cc
Q psy10918 185 VP 186 (207)
Q Consensus 185 ~~ 186 (207)
..
T Consensus 97 ~~ 98 (115)
T cd05769 97 DK 98 (115)
T ss_pred ee
Confidence 33
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=47.07 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=47.4
Q ss_pred eeeeeeCCcEEEEEEec-cCCCCceEEEEEcCc---eeeec---cc------------eeEEeec--CceEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVD-ANPPDVKFSWTFNNS---AETVN---VA------------QAHILRS--GTLSVVAYSPNSE 166 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~---~~~~~---~~------------~~~~~~~--~~~~~l~i~~~~~ 166 (207)
...+.+|+++.|.|... .... ..+.|++... ...+. .. +.....+ .....|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~-~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQ-SSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSG-SEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred eEEEecCCCEEEEEEEeCCCCc-ceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 34567999999999998 3334 3999998433 11110 00 0111111 2356799999999
Q ss_pred CCCeEEEEEEecC
Q psy10918 167 LDYGTLICWGSNK 179 (207)
Q Consensus 167 ~~~g~y~C~~~n~ 179 (207)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999976
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-05 Score=43.46 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=44.7
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|++++|+|.....+. .+.+.|...+...- .....+...|.+.+++..|+|.++|.++-.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4678999999999976432 24899986543311 111233456889999999999999999743
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.4e-06 Score=49.68 Aligned_cols=64 Identities=14% Similarity=0.297 Sum_probs=41.9
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcc----c---c---cc-c---------cCCeEe----cCCeEEEEecCCCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT----L---H---HN-I---------AQGIIM----TNQSLVLQRVNRQS 71 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~----~---~---~~-~---------~~~~~~----~~~~l~i~~~~~~d 71 (207)
.+.+|++|+|.|........ .+.||+.... + . .. . ..++.. ....|+|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 36789999999998654333 7999984421 1 0 00 0 011111 11249999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999875
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=43.34 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=42.2
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccce---eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQ---AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.|.|.+.+.+. ..+.|++++......... ...........|.+.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPP-PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCC-CcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988444 499999976553322110 011112234568888999999999999998865
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.2e-05 Score=44.74 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=38.7
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-CeE-ecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-GII-MTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~~~-~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.|+..+|.|.+.+ +|....++|.+||..+...... ... ..++ .|.+. ..+...|.|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 4666899999988 5666689999999887542110 011 1112 24333 34566899999754
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.5e-05 Score=44.66 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=44.9
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
...+.|.+.+..|+..|.|+++..... ........++. .+.|.+......|...|+|.+.+..........+.
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~--~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNA--NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCe--eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 578999888654445999998722110 11111222333 34677766666777899999999876554444443
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=46.93 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=40.2
Q ss_pred ccCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEec---CCe------EEEEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMT---NQS------LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~---~~~------l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+..|..++|.|.+.+ +|....+.|+++|..+..... .....+ +++ |.+..-...+...|.|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 345778999999988 455558899999987653210 011111 122 444333234556899999864
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=48.13 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=42.2
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEee----cCc---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILR----SGT---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~----~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..++|.|.+.|. |..+.+.|+++|..+..... ...... +++ .+.|.+..-...+...|+|.+.....
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 46789999999996 55678999999876432110 111111 233 23354543333456789999997553
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=46.22 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....++|+++|..+..... ......++ .|.+......+...|.|.+.+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 4566899999988 466568999999988643211 11111122 2444433334567999999864
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=43.12 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=41.4
Q ss_pred cEEEEEEeccCCCCceEEEEEcCc--eeeecc--------------ceeEEee-cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNS--AETVNV--------------AQAHILR-SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~--------------~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.++|.|..........+.|.|... ...+.. .+..... ......|.|.+++.+|.|.|+|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 578888876443334888988532 111000 0111110 11235689999999999999999986
Q ss_pred C-CCCCc
Q psy10918 179 K-IGHQR 184 (207)
Q Consensus 179 ~-~g~~~ 184 (207)
- .|...
T Consensus 82 ~P~g~~~ 88 (96)
T cd05889 82 YPQGSWE 88 (96)
T ss_pred CCCCCeE
Confidence 4 45543
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.4e-05 Score=47.50 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=41.6
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCcccccccc---CCe------EecCCeEEEEecCCCC-CeeeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA---QGI------IMTNQSLVLQRVNRQS-AGNYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~---~~~------~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~ 83 (207)
++..++.++|.|.+.+. |....+.|++|+..+..... ... ....+.|.+......+ ...|.|.+....
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 33456779999999874 55568999999987764211 011 1111234444433323 568999998653
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=41.67 Aligned_cols=60 Identities=22% Similarity=0.500 Sum_probs=41.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
.+.|.|+|.+. . +|.|++ |..+.. ..+.+|.|.....+..|.|.|.+.+ ......|.|++
T Consensus 6 ~~~V~L~C~~~----t-si~W~k-G~~~~~-------~~~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNGA----T-NITWKK-GKEILE-------VSNTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecCC----C-cEEEec-Cccccc-------ccccEEeccCcccCCCcceEecCcc-----CCCcEEEEEEE
Confidence 45799999752 3 799999 554432 1156788888889999999998865 12334466653
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.2e-05 Score=45.53 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=46.8
Q ss_pred CceeeeeeCCcEEEEEEeccCC-----CCceEEEEEcCcee-----ee-cc----------ceeEE--eecCceEEEEEe
Q psy10918 106 QRVLGVARQEKVNISCEVDANP-----PDVKFSWTFNNSAE-----TV-NV----------AQAHI--LRSGTLSVVAYS 162 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~-----~~-~~----------~~~~~--~~~~~~~~l~i~ 162 (207)
+....+..|+.++|.|...... ....+.|++..... .. .. .+... ........|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3344678999999999765321 12479999853211 00 00 01111 112335679999
Q ss_pred cCCCCCCeEEEEEEecC
Q psy10918 163 PNSELDYGTLICWGSNK 179 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~ 179 (207)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998763
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-06 Score=65.99 Aligned_cols=185 Identities=14% Similarity=0.255 Sum_probs=97.5
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCc---EEEEEECCccccc---cccCCeEecCCeEEEEecCCCCCe---ee
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVY---KVEWRHNNKTLHH---NIAQGIIMTNQSLVLQRVNRQSAG---NY 75 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~---~i~W~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g---~Y 75 (207)
.+.|...+.+..+..|.++.|.|.+...+... +-.|......... ............+.|...+.++.+ .|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 34556667788888899999999976544320 1124433222111 000011111122444444444433 56
Q ss_pred EEE--EeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEee
Q psy10918 76 TCV--GFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILR 152 (207)
Q Consensus 76 ~C~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 152 (207)
.|. +....|...++...+.+.+........+....+..+..+.+.|... +.|.. .+.|++++..... ..+.....
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paa-e~~w~k~e~~~~p-d~n~~~~~ 181 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKA-EVEWLKNEVVIDP-DANVIRAS 181 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhh-hhhccccCCCCCc-cccchhhh
Confidence 654 4444443322222111111111111223333455667778877665 45554 9999998876543 22222333
Q ss_pred cCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceEEEEeec
Q psy10918 153 SGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCVFHIVSA 194 (207)
Q Consensus 153 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~~~v~~~ 194 (207)
+.+ +.+......|.|+|+|.|.|..+.. .-.+.+.+.+.
T Consensus 182 d~~---li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~ 221 (909)
T KOG1480|consen 182 DHN---LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN 221 (909)
T ss_pred cCC---ccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence 333 7778899999999999999987654 33444444443
|
|
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=43.22 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=26.2
Q ss_pred cccCCCcEEEEeEecc-CCCCcEEEEEECCccccc
Q psy10918 16 HIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHH 49 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~ 49 (207)
++..+..++|.|.+.+ +|....++|.+||..+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3344667899999988 566668999999987654
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.3e-05 Score=41.16 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=35.2
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
+.|.+|+|+|.... . .+.|.+++..+... +..+.+.+-. ++.|.|.|.+.
T Consensus 5 isGTtVtlTCP~~~---~-~i~W~~n~~~~~g~--------~~~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 5 ISGTTVTVTCPLSG---D-DIKWKKNDQVSQGS--------DEKYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EeccEEEEECCCCC---C-CceEEeCCccCCCC--------CceEEeeccC-CCCceEEEEeC
Confidence 46899999998542 2 48999998555432 2234444555 88999999985
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.5e-05 Score=45.94 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=40.0
Q ss_pred CcccCCCcEEEEeEeccC--CCCcEEEEEECCccccc-cccCCeEecCCe------EEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNKTLHH-NIAQGIIMTNQS------LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+..|+.++|.|.+.+. |....++|.|++..... .........+++ |.+..-...+.-.|.|.+.+.
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 345568899999999877 66668999998743321 111111122233 333332223455899998765
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.94 E-value=8e-05 Score=42.59 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=41.2
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC-eE-ecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG-II-MTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~-~~-~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..++.++|.|.+.+ +|....+.|++++..+....... .. ..++ .|.+. ..+...|.|.+.+..
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 44888999999987 46566899999998876432111 11 1222 24444 556668999997643
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=41.60 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=41.9
Q ss_pred CcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 115 EKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 115 ~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.|.+.+ .|++ .|.|+++..... ........++. .+.|.+......+...|+|.+.|..-.....
T Consensus 16 ~~~va~C~s~~gkP~a-~ItW~~~~~~~~--~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSANGKPPA-TISWETTLGGEA--ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECCCCcCCC-EEEEEeCCCCcc--eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 46788999965 4555 999998621110 01111222332 3467776666667779999999987544333
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.8e-05 Score=43.78 Aligned_cols=63 Identities=16% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccc-------cCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNI-------AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
|+.+.+.|.+.+ +|.+ .|.|+.++..+.... ........+.|.+......+...++|.+.+..
T Consensus 14 ~~~~~~~C~s~~~~P~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP-QITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-E-EEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCe-EEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 678999998754 6666 999999998772110 11111122356666555567779999998754
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.2e-05 Score=43.45 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=41.4
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEee-cCce---EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILR-SGTL---SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~-~~~~---~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.++.+.|.|.+.++ |..+.+.|.++|.. ..... ...... ++.. +.|.+..........|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 35678999999996 66779999999886 22211 111222 3332 334444433334667999999854
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00022 Score=43.71 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=45.3
Q ss_pred ceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCc--eee-e---c------------cceeEEeecC--ceEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDANP-PDVKFSWTFNNS--AET-V---N------------VAQAHILRSG--TLSVVAYSPNS 165 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~--~~~-~---~------------~~~~~~~~~~--~~~~l~i~~~~ 165 (207)
....+.+|+.++|.|...... ....+.|++... ... + . ..+.....+. ....|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 334567899999999876432 223799998432 110 0 0 0111121122 23469999999
Q ss_pred CCCCeEEEEEEec
Q psy10918 166 ELDYGTLICWGSN 178 (207)
Q Consensus 166 ~~~~g~y~C~~~n 178 (207)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999999875
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00063 Score=44.40 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=46.9
Q ss_pred eeeeCCcEEEEEEeccC--CCCceEEEEEcCc----eeeecc------------ceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 110 GVARQEKVNISCEVDAN--PPDVKFSWTFNNS----AETVNV------------AQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~----~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
....|+.+.|.|..... -+...|.|+|.+. ..-... ....+..+.+...|.|.+++.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 35689999999977622 2346999999432 111100 11223333455678999999999999
Q ss_pred EEEEEecCC
Q psy10918 172 LICWGSNKI 180 (207)
Q Consensus 172 y~C~~~n~~ 180 (207)
|+|......
T Consensus 102 Y~C~fQkge 110 (221)
T PHA03376 102 YLCRMKLGE 110 (221)
T ss_pred EEEEEEcCC
Confidence 999998654
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.1e-05 Score=61.20 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=66.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+.+++.-..|..+..+.+.|......+...+.|++++..+.. +..........+.+..++..|.|+|+|++.|..+...
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhcccc
Confidence 344555567778888899998755444448999999987766 3333334456799999999999999999999888777
Q ss_pred cceEEEEEEeCC
Q psy10918 88 SNAFFLNVMYSP 99 (207)
Q Consensus 88 ~~~~~l~v~~~~ 99 (207)
...+.+.+....
T Consensus 211 ~~~~~v~vyv~g 222 (909)
T KOG1480|consen 211 SDPATVQVYVNG 222 (909)
T ss_pred ccceEEEEEEcC
Confidence 666666666443
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0002 Score=41.90 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=41.1
Q ss_pred CcccCCCcEEE-EeEeccCCCCcEEEEEECCccccc----cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 15 DHIKEDSDVYF-DCDIVAVPPVYKVEWRHNNKTLHH----NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 15 ~~v~~g~~v~l-~C~~~~~~~~~~i~W~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..+.+|+.+.+ .|.+.+..++.+|+|+.+...... .+......-.+.+.+...+..|...+.|.+.+..
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 34556777887 888855433449999986433221 0111111122346666666677789999998653
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=40.35 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=19.6
Q ss_pred CceEEEEEecCCCCCCeEEEEEE
Q psy10918 154 GTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 154 ~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
.....|.|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 44567999999999999999964
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=38.99 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=44.4
Q ss_pred eeeeCCcEEE-EEEeccCCCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 110 GVARQEKVNI-SCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 110 ~~~~g~~~~l-~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+.+|..+.+ .|.+.+..|+..|.|+.+..... ........+++ .+.+.+...+..|...++|.+.+..-.
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 4557788888 88887654445999997643321 11111222333 345666666667888999999987543
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=41.14 Aligned_cols=58 Identities=19% Similarity=0.394 Sum_probs=35.2
Q ss_pred cEEEEeEeccCCCC-cEEEEEECCc--cc---cc-----------cccCCeEe--c----CCeEEEEecCCCCCeeeEEE
Q psy10918 22 DVYFDCDIVAVPPV-YKVEWRHNNK--TL---HH-----------NIAQGIIM--T----NQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 22 ~v~l~C~~~~~~~~-~~i~W~~~~~--~~---~~-----------~~~~~~~~--~----~~~l~i~~~~~~d~g~Y~C~ 78 (207)
++.|.|........ ..+.|++... .+ .. ....++.. . ..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899988654432 3788998542 11 00 00111111 1 13599999999999999996
Q ss_pred E
Q psy10918 79 G 79 (207)
Q Consensus 79 ~ 79 (207)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
|
|
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00059 Score=39.98 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=39.3
Q ss_pred cccCCCc--EEEEeEeccCCCCcEEEEEECCccccccc----cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 16 HIKEDSD--VYFDCDIVAVPPVYKVEWRHNNKTLHHNI----AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 16 ~v~~g~~--v~l~C~~~~~~~~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
++..|.. +.+.|.+.+..++.+|+|+++........ ........+.|.+.....+|...|.|.+.+...
T Consensus 9 ~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 9 EVSAGTIPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred EeecCCCccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 3444444 78999886543344999999732111100 001111123466666566677799999997643
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00027 Score=41.58 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=38.8
Q ss_pred CcccCCCcEEEEeEecc-C-CCCcEEEEEECCccccccccCCeEecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 15 DHIKEDSDVYFDCDIVA-V-PPVYKVEWRHNNKTLHHNIAQGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.....+..++|.|.+.+ + |....+.|.+++.. ...........++ .|.+..-.......|+|.+.+..
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 33456888999999987 4 54568999999875 2111111111122 24444222233346999987543
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=37.71 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=34.1
Q ss_pred eeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..|..++|+|.... . .+.|.+++.... +....+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~-~i~W~~n~~~~~-----------g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---D-DIKWKKNDQVSQ-----------GSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---C-CceEEeCCccCC-----------CCCceEEeeccC-CCCceEEEEeCC
Confidence 47889999997653 2 599999875422 111123333444 889999999964
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00075 Score=39.60 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEEEeEec-cCCCCcEEEEEECCccccc----cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 23 VYFDCDIV-AVPPVYKVEWRHNNKTLHH----NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 23 v~l~C~~~-~~~~~~~i~W~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..+.|.+. +.|.+ +|.|+++...... ..........+.|.+.....+|...|+|.+.+..-
T Consensus 18 ~va~C~s~~gkP~a-~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 18 TVATCVSANGKPPA-TISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred EEEEEECCCCcCCC-EEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 67899995 55665 9999997211110 00011111123466666666677799999987653
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=36.53 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=29.3
Q ss_pred cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeC
Q psy10918 58 TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYS 98 (207)
Q Consensus 58 ~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~ 98 (207)
.+..|+|.++..+|+|.|.|...|..-.. ..++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeec
Confidence 35679999999999999999998654333 44566666643
|
|
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00057 Score=40.11 Aligned_cols=63 Identities=10% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....++|++||.. ..... ......++ .|.+..........|.|.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 4667999999988 466668999999987 32210 11111122 2443433222356799998864
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=39.19 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=43.0
Q ss_pred CCCcccCCCcEEEEeEeccCCCC--cEEEEEECCccc-c--------c----cccCCeE------ecCCeEEEEecCCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTL-H--------H----NIAQGII------MTNQSLVLQRVNRQS 71 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~-~--------~----~~~~~~~------~~~~~l~i~~~~~~d 71 (207)
....+..|+.+.|.|.+.+.... ..+.|+|..... . . ....++. ....+|+|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 44567789999999999664333 378899832211 0 0 0011111 111259999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
.+.|.|...
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999753
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.015 Score=43.74 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=70.6
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCC--CCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEE
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEG--DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTF 136 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~ 136 (207)
.|.|..++..++|.|.=.+.+... ......+.+.+...|.+.... ..+.+|+...-.|.+..+.+ ...+.|+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 399999999999999755443221 122345667777777543322 24679999999999988643 46899999
Q ss_pred cCceeeecc--ceeEEeecCce---EEEEEecCCCCC--CeEEEEEEecCC
Q psy10918 137 NNSAETVNV--AQAHILRSGTL---SVVAYSPNSELD--YGTLICWGSNKI 180 (207)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~---~~l~i~~~~~~~--~g~y~C~~~n~~ 180 (207)
|+..+.... .......+|.. ++|.+......+ .=..+|.+.---
T Consensus 367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R 417 (566)
T PHA03269 367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR 417 (566)
T ss_pred CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence 987755322 11233444532 334332111111 234689987543
|
|
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=35.10 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..++.|.|... . +|.|++ |..+.. .....|.+-....+-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----t-si~W~k-G~~~~~----------~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----T-NITWKK-GKEILE----------VSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----C-cEEEec-Cccccc----------ccccEEeccCcccCCCcceEecCcc
Confidence 35789999662 3 799999 543221 1133466767777888999999987
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=36.90 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=41.2
Q ss_pred eeeCCcEEEEEEeccCCC--CceEEEEEcCceeeeccceeEE---eecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNVAQAHI---LRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...|..+++.|.+.+..+ ...+.|++++..+....-.... ........+.+.....++...|+|.|.=.++
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 468999999999986543 2589998865543322110000 0111224456655444444599999985544
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0037 Score=36.56 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=40.8
Q ss_pred CcccCCCcEEEEeEecc-CCC-CcEEEEEECCccccccccC------CeEecCCeEEEEecCCCCCe-eeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVA-VPP-VYKVEWRHNNKTLHHNIAQ------GIIMTNQSLVLQRVNRQSAG-NYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~~~-~~~i~W~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~ 82 (207)
..+.+|..+++.|.+.+ +|. ...+.|++....+....-. ........+++... .+|.| .|.|.+.-.
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 34578999999999975 343 1268899866555432100 01112234666664 55555 999998744
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.077 Score=39.49 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCC------eeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSA------GNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~------g~Y~C~~~~ 81 (207)
....+.+|+...-.|.+..+ |. ...+.||.|+.++...... .....++...++-++..+. -..+|.+.-
T Consensus 227 ~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W 306 (466)
T PHA03270 227 RPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTW 306 (466)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEE
Confidence 34557789999999999653 32 2479999999988531111 1111122223333343332 277898763
Q ss_pred e-CCCCc---cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCcee
Q psy10918 82 I-EGDGE---SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE 141 (207)
Q Consensus 82 ~-~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~ 141 (207)
. ..... +....-.|+.+|.+. ...++.. ..|.+.=-|..+.+.|.-++...
T Consensus 307 ~rd~vS~sR~nAa~~P~VY~~P~Is-------v~F~dG~--AVCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 307 HRDSVSFSRRNATGAPTVLPRPTIE-------MEFGGDE--AVCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred ccCCccceeecccccCccccCCeEE-------EEEeCCE--EEEeccccCCCCEEEEEecCCCC
Confidence 2 22111 222223333333322 1223332 23444333444699998766543
|
|
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=40.19 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=40.9
Q ss_pred eCCcEEEEEEeccCC----CCceEEEEEcCceeeecc-ceeEEe---------e--cCceEEEEEecCCCCCCeEEEEEE
Q psy10918 113 RQEKVNISCEVDANP----PDVKFSWTFNNSAETVNV-AQAHIL---------R--SGTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~-~~~~~~---------~--~~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
=++.+.|.|.+.... ....+.|.+++..+..-. ...... . ..+...|.+...+.- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 357889999997522 235799999876543211 101110 0 112334777654333 79999999
Q ss_pred ecCCCCCccceEEEEe
Q psy10918 177 SNKIGHQRVPCVFHIV 192 (207)
Q Consensus 177 ~n~~g~~~~~~~~~v~ 192 (207)
.......+....+...
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 8876555555555443
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=33.34 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
-|-|.+...+|+|.|.|..+|..-....+..+.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3667789999999999999987665555655655543
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.11 Score=38.69 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=56.4
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCC-CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcC
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGD-GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNN 138 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~ 138 (207)
|.|..++...+|.|+=...+..+. ...+.+.+..+.+|.+.... ..+.+|+...-.|.+..+.+ ...+.|+.|+
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 899999999999999887654442 22334556666677644322 24678999999999987643 4689999998
Q ss_pred ceee
Q psy10918 139 SAET 142 (207)
Q Consensus 139 ~~~~ 142 (207)
....
T Consensus 261 ~~V~ 264 (466)
T PHA03270 261 DEVF 264 (466)
T ss_pred cccc
Confidence 8653
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.024 Score=34.31 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=43.0
Q ss_pred eeeeCCcEEEEEEeccCCC--CceEEEEEcCce-eeecc-------------cee--EEeecCceEEEEEecCCCCCCeE
Q psy10918 110 GVARQEKVNISCEVDANPP--DVKFSWTFNNSA-ETVNV-------------AQA--HILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~-~~~~~-------------~~~--~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
.+..|..+.|.|.+.+..- ...+.|.|.... ++.-. .+. ......+.-.|.+.+++.+|.+.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 3567788999999977532 247889874222 11100 011 11122334579999999999999
Q ss_pred EEEEEe
Q psy10918 172 LICWGS 177 (207)
Q Consensus 172 y~C~~~ 177 (207)
|.|...
T Consensus 89 Y~Ca~e 94 (115)
T cd05721 89 YFCKIE 94 (115)
T ss_pred EEEEee
Confidence 999764
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0017 Score=40.05 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=35.0
Q ss_pred cCCCcEEEEeEeccC----CCCcEEEEEECCccccccccC-C-e-------------EecCCeEEEEecCCCCCeeeEEE
Q psy10918 18 KEDSDVYFDCDIVAV----PPVYKVEWRHNNKTLHHNIAQ-G-I-------------IMTNQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~----~~~~~i~W~~~~~~~~~~~~~-~-~-------------~~~~~~l~i~~~~~~d~g~Y~C~ 78 (207)
.-+++|.|+|.+... -....+.|.+++..+..-+.. . . ...+.+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 457889999998651 112369999988766431111 0 0 011234777775444 8999999
Q ss_pred Eeee
Q psy10918 79 GFNI 82 (207)
Q Consensus 79 ~~~~ 82 (207)
+...
T Consensus 104 Vt~~ 107 (130)
T PF08204_consen 104 VTEL 107 (130)
T ss_dssp EEET
T ss_pred EEec
Confidence 9744
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.011 Score=39.25 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce-eee--------c---------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA-ETV--------N---------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~-~~~--------~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
...++++.|.|.......-....|+.+... +.. + ........++..++|+|.++..++.|-|
T Consensus 36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY 115 (251)
T PHA02982 36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF 115 (251)
T ss_pred ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence 356889999998655444347889864322 110 0 0112355667788999999999999999
Q ss_pred EEEEecCCCCC
Q psy10918 173 ICWGSNKIGHQ 183 (207)
Q Consensus 173 ~C~~~n~~g~~ 183 (207)
+|.+....+..
T Consensus 116 tc~~ks~~~k~ 126 (251)
T PHA02982 116 TCEAKDAEGKE 126 (251)
T ss_pred EEEEecCCCch
Confidence 99999866543
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0054 Score=42.31 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 34 PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 34 ~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.| .+.|...+...............+.|.+.+....++|.|+|.+....
T Consensus 12 DP-~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DP-TYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CC-ceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 45 89999865444333344455667789999999999999999998554
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.13 Score=34.42 Aligned_cols=116 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECC-ccccccc------------------cCC--eEecCCeEEEEecCCCCCee
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNN-KTLHHNI------------------AQG--IIMTNQSLVLQRVNRQSAGN 74 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~-~~~~~~~------------------~~~--~~~~~~~l~i~~~~~~d~g~ 74 (207)
....++.|.|.|.........+..|+.+. ..+.... ... .....++|+|.++..+..|=
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 34568999999997555444477898743 2332100 000 11234679999999999999
Q ss_pred eEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeee-CCcEEEEEEeccCCCCceEEEEEcCc
Q psy10918 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVAR-QEKVNISCEVDANPPDVKFSWTFNNS 139 (207)
Q Consensus 75 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~~~~~~W~~~~~ 139 (207)
|+|.+....+.......-|.|+...... ...+ .....+.|-+.....+ -..|.-+|-
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~d-vp~W~V~GV 172 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGD-VPRFIVAGI 172 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCC-CccEEEeeE
Confidence 9999986544433322234443211111 1112 2345778988766554 238887654
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.05 Score=37.89 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=43.7
Q ss_pred CCcEEEEEEeccC----CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 114 QEKVNISCEVDAN----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 114 g~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
++.+.+.|.++.- -....+.|.+++........ . +.+.|.+. -...-.|+|+|.|.+..-.......+
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~------t-n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN------T-NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC------C-cceEEEEe-ccccCCCceeEEEeecccCccEEEEE
Confidence 5688999998863 12358999999877542211 1 22446553 44456899999999866544334444
Q ss_pred E
Q psy10918 190 H 190 (207)
Q Consensus 190 ~ 190 (207)
.
T Consensus 103 k 103 (286)
T PHA03042 103 Q 103 (286)
T ss_pred E
Confidence 3
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.25 Score=36.76 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=65.8
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEc
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFN 137 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~ 137 (207)
.|.|.++.-.++|.|.-...+..... ..+.+.+.+.+.|......+ ..+..|+...-.|.+..+.+ ...+.|+.|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 49999999999996644444332221 12234455554443222222 23678999999999988643 468999999
Q ss_pred Cceeeeccce-eEE-eecC--c---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 138 NSAETVNVAQ-AHI-LRSG--T---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 138 ~~~~~~~~~~-~~~-~~~~--~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|......... ... ..++ . .+.+.+.+......=..+|.+.-..+
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 8765432211 111 1111 1 23333333222233378999975443
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.27 Score=37.10 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=69.5
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCCC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcC
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNN 138 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~ 138 (207)
|.|..++...+|.|.=...+..+.. ....+.+....+|.+.... ..+.+|+...-.|.+..+.+ ...+.|+.|+
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 9999999999999975443333321 1233444446666644322 24679999999999987643 4689999999
Q ss_pred ceeee-cc--ceeEEeecCc---eEEEEEecCCC-CCCeEEEEEEecCC
Q psy10918 139 SAETV-NV--AQAHILRSGT---LSVVAYSPNSE-LDYGTLICWGSNKI 180 (207)
Q Consensus 139 ~~~~~-~~--~~~~~~~~~~---~~~l~i~~~~~-~~~g~y~C~~~n~~ 180 (207)
..... .. .......++. .++|.+..... ...=..+|.+.-.-
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 87652 21 1122233343 33444433221 23346899987543
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0061 Score=35.95 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 55 IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 55 ~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+...+-+|.|..++..|+|.|.-++.+..|......+.+.|
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 44556789999999999999999999888877555555544
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.25 Score=36.83 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=27.8
Q ss_pred CCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCccccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLHH 49 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~~ 49 (207)
....+.+|+...-.|.+..+ |+ ...+.|+.||.++..
T Consensus 253 ~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 253 LAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 34557789999999999653 32 347999999988764
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.032 Score=38.65 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=34.8
Q ss_pred ceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 130 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.+.|...+.....+.+...+...|. |.+.+....++|.|+|..+...
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEEe
Confidence 39999986555433333344544443 8899999999999999998765
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.084 Score=36.82 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=40.1
Q ss_pred CCCcEEEEeEeccC----CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 19 EDSDVYFDCDIVAV----PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 19 ~g~~v~l~C~~~~~----~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
-.+++.++|.+..- -....++|..++..+...+.. ...+|.+... ..-.|+|+|++.+-..
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----n~aSL~~~f~-~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----NTSSLKFNFS-KNLSGNYTCEAINKFN 94 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----cceEEEEecc-ccCCCceeEEEeeccc
Confidence 47889999998652 122369999999877543222 1245666543 4458999999986544
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.65 Score=35.23 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=28.0
Q ss_pred CCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCcccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLH 48 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~ 48 (207)
....+.+|+...-.|.+..+ |+ ...+.|+.|+.++.
T Consensus 243 ~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 243 SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 44567889999999999653 32 34799999999887
|
|
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.74 Score=35.18 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCcccCCCcEEEEeEeccC-C-CCcEEEEEECCccccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-P-PVYKVEWRHNNKTLHH 49 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~-~~~~i~W~~~~~~~~~ 49 (207)
....+.+|+...-.|.+..+ | ....+.|+.|+.++..
T Consensus 335 ~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 335 IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 34567889999999999653 3 2347999999888874
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.024 Score=42.48 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=56.6
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEE---cCceeeeccceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTF---NNSAETVNVAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~---~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+-.++...++|-+.|.+.+ .|.|.+ |+..+.+. ....+. .-.+...|.|-+-...|+|.|+|.+.|..|-..
T Consensus 207 ~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hcccchhhcccccccCCcCc-eeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 35578899999999999987 999986 33332222 111110 011234578888899999999999999999887
Q ss_pred cceEEEEe
Q psy10918 185 VPCVFHIV 192 (207)
Q Consensus 185 ~~~~~~v~ 192 (207)
+++.+.+.
T Consensus 285 rdv~c~s~ 292 (560)
T KOG4597|consen 285 RDVPCSSV 292 (560)
T ss_pred ccceeeee
Confidence 77766544
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.082 Score=38.39 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=18.6
Q ss_pred cEEEEeEecc-CCCCcEEEEEEC
Q psy10918 22 DVYFDCDIVA-VPPVYKVEWRHN 43 (207)
Q Consensus 22 ~v~l~C~~~~-~~~~~~i~W~~~ 43 (207)
.++|.|.+.| +|....+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999988 466668999999
|
|
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.064 Score=45.22 Aligned_cols=129 Identities=6% Similarity=-0.083 Sum_probs=73.8
Q ss_pred CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE----------------eCCcccCCCC--ceeeeeeCCcEEEEE
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM----------------YSPTCKPHQQ--RVLGVARQEKVNISC 121 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~----------------~~~~~~~~~~--~~~~~~~g~~~~l~C 121 (207)
.+..+.+....+.+.|.|...+..+..... +.-.+. .++..+.... .......+..+.+.|
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~ 356 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT 356 (1205)
T ss_pred ccccccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence 345666666677778888776554433221 111111 1111111111 122344667899999
Q ss_pred EeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 122 EVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 122 ~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
...+...+-.+.|+.++........ ............+.+......+.+.|.|.|.|..|........
T Consensus 357 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~ 425 (1205)
T KOG0613|consen 357 ALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES 425 (1205)
T ss_pred cccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence 9999887757999987554322211 1112222233346677888889999999999999876544433
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.16 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=18.9
Q ss_pred cEEEEEEeccC-CCCceEEEEEc
Q psy10918 116 KVNISCEVDAN-PPDVKFSWTFN 137 (207)
Q Consensus 116 ~~~l~C~~~~~-~~~~~~~W~~~ 137 (207)
.+.|.|.+.|. |..+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 47999999996 55679999998
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.48 Score=35.22 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=47.4
Q ss_pred CcccCCCcE-EEEeEeccCCCCcEEEEEECCcccccc--------ccCCe------EecCCeEEEEecCCCCCeeeEEEE
Q psy10918 15 DHIKEDSDV-YFDCDIVAVPPVYKVEWRHNNKTLHHN--------IAQGI------IMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 15 ~~v~~g~~v-~l~C~~~~~~~~~~i~W~~~~~~~~~~--------~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
..+..|+.+ .|+|..........+...+.+..-... ..... ....-.+.+.+++..|+|.|+|..
T Consensus 21 Ii~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCIF 100 (500)
T PHA02914 21 IFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCIF 100 (500)
T ss_pred EEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEEE
Confidence 445567775 999998765544467676633221110 00000 011234888899999999999998
Q ss_pred eeeCCCCccceEEEEEEeCCc
Q psy10918 80 FNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v~~~~~ 100 (207)
...... +....+.|...|.
T Consensus 101 YLn~~E--tyrH~I~vrVmPK 119 (500)
T PHA02914 101 YLGDNE--SHKHEILVRKAPK 119 (500)
T ss_pred EeCCce--eEEEEEEEEEccc
Confidence 743322 3333445544443
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.11 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=38.1
Q ss_pred cCCCcccCCCcEEEEeEeccC----CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV----PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~----~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
+....+..|++++..|..... .....+.|..++..++......+....+.+++.+......-.|.|..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 455677889999999998532 12237999998887665332222111134555555444445666653
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.31 Score=39.54 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=82.0
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+..|..+++.|...+.+.+ .+.|+.++............-.+....+.+ +.|.+.|..+.... .+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~-~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVP-CHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNP-SILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCc-ceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCc-eeeeE
Confidence 456678899999999999887 899998776554322111111111111111 78988877765533 34444
Q ss_pred EEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 95 VMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
+..+............ ....+.-.+.+.+.+ ...|..++..+...... .....+..-.+........+.|.|+|
T Consensus 272 ~~~p~~~~~~~~~~~~----~~~C~~~~~~~~~~~-~~~~~~~~~~~~~~g~~-~~t~s~~~~C~~~~~~~h~~~~~~~~ 345 (774)
T KOG1026|consen 272 VDLPKAEVLLCSPLSD----HHNCIPIGITANPGP-ALHWCYNGSGLNYRGTV-CVTKSGKEQCLPWNDPPHSHNGNYTL 345 (774)
T ss_pred EecccccccCCCCccc----cCceeeeeccCCCCC-ceeeeecCccceEeccc-ccccccCcCCcccCcCcccccCccee
Confidence 4433221111111000 111222222355565 78888877664332211 11111100112333335668899999
Q ss_pred EEecCCCCCccceE
Q psy10918 175 WGSNKIGHQRVPCV 188 (207)
Q Consensus 175 ~~~n~~g~~~~~~~ 188 (207)
.+.+..|.......
T Consensus 346 ~~e~~~g~~~~r~~ 359 (774)
T KOG1026|consen 346 FPELPGGKNYCRNP 359 (774)
T ss_pred eecccCccccccCc
Confidence 99999886654433
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=2 Score=32.15 Aligned_cols=161 Identities=12% Similarity=0.145 Sum_probs=85.6
Q ss_pred CCCcccCCCcEEEEeEecc--CCCCcEEEEEECCccccc-----------------cccC--------CeEecCCeEEEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNNKTLHH-----------------NIAQ--------GIIMTNQSLVLQ 65 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~~~~~~-----------------~~~~--------~~~~~~~~l~i~ 65 (207)
....+..|..|.|.|.... +....++.|+--+-++.. .... ...+..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3345566999999998753 333347889876544321 0000 011345789999
Q ss_pred ecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeC-CcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ-EKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
++.....|=|.|.+..+.-.. ....-|.|.. .+.. . -..+| ....+.|-+... ..|+.+.|..+|-...-
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~-ec~~Cl~V~d--~V~f---~--W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G 423 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKE-ECRHCFKVAD--HVFF---K--WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGG 423 (500)
T ss_pred eEEEEcCCceEEEEecCcchh-hhhhheEecc--EEEE---E--EEeccCceEEEEEEEEecccCCceeEEEEccEEecC
Confidence 999999999999997542211 1111132221 0000 0 11132 345678877665 45568999987654221
Q ss_pred ccce------eEEeecCceEEEEEecCCCCC-CeEEEEEEecCCC
Q psy10918 144 NVAQ------AHILRSGTLSVVAYSPNSELD-YGTLICWGSNKIG 181 (207)
Q Consensus 144 ~~~~------~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g 181 (207)
.... ..+...-..+.+.|.+-...| -..-.|...-..+
T Consensus 424 ~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 424 EIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred eecCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 1100 011111123345565554445 4566787765443
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.35 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|.|...+..|+|.|.-.+.+..|.. ....+.|.
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVs 105 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVS 105 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEE
Confidence 58899999999999999999988865 34455544
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.19 Score=38.06 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=54.0
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEE---CCcccccccc----CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRH---NNKTLHHNIA----QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~---~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+.++++..++|.+.|.+.+ .+.|.+ |+..+..... .........|.|-+....|.|.|+|.+.+..|..
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hhhcccchhhcccccccCCcCc-eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 3456788999999999998877 899965 3322211111 1112223469999999999999999999988866
Q ss_pred ccceEEEEE
Q psy10918 87 ESNAFFLNV 95 (207)
Q Consensus 87 ~~~~~~l~v 95 (207)
.. .+.+.+
T Consensus 284 ~r-dv~c~s 291 (560)
T KOG4597|consen 284 RR-DVPCSS 291 (560)
T ss_pred ec-cceeee
Confidence 32 444443
|
|
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.63 Score=26.33 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.0
Q ss_pred EEEecCCCCCCeEEEEEEe
Q psy10918 159 VAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~ 177 (207)
........+|+|.+.|.|+
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 3445667789999999995
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=92.22 E-value=11 Score=36.00 Aligned_cols=158 Identities=14% Similarity=0.173 Sum_probs=87.7
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEE--eeeCCCCccceEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVG--FNIEGDGESNAFFLN 94 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~--~~~~~~~~~~~~~l~ 94 (207)
+..|+..++.-.+....+. .+.|+.+-..+.... .....+..++.. ....|.|.-.+ .|..+.. .....+.
T Consensus 1965 ~~~g~~~tF~A~v~~g~~V-~f~W~f~~~~~~g~~--~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s~-n~t~~i~ 2037 (2740)
T TIGR00864 1965 IATGEEKNFTANVQRGKPV-AFAWTFDLHHLHGDS--LVIHMGKDVSYT---AEAAGLLEIQLGAFNALGAE-NITLQLE 2037 (2740)
T ss_pred eecCceEEEEEEEecCCce-EEEEEeeecccCCCc--ceeecCCceEEc---cCCCcEEEEEEEEEcccCcc-cccEEEE
Confidence 4568888888887554444 899987644333311 122223333222 24688887655 4666654 3455677
Q ss_pred EEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 95 VMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
|+.+...............+..+.|.|.....+..+.+.|-++++...... +... +.+ .....|.|.-
T Consensus 2038 VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T-------~~~~----~sH-tY~r~G~Y~V 2105 (2740)
T TIGR00864 2038 AQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDT-------DEPR----AEH-EYLHPGDYRV 2105 (2740)
T ss_pred EEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCcccc-------CCce----eEE-EecCCccEEE
Confidence 775543221111112345688899999986655556999998755422111 1110 000 2235688875
Q ss_pred E--EecCCCCCccceEEEEee
Q psy10918 175 W--GSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 175 ~--~~n~~g~~~~~~~~~v~~ 193 (207)
. |.|.++.......+.|.+
T Consensus 2106 ~V~a~N~VS~~~a~~~i~V~v 2126 (2740)
T TIGR00864 2106 QVNASNLVSFFSAHAEINVQV 2126 (2740)
T ss_pred EEEEEcceeeeeeEEEEEEEE
Confidence 4 468777665555555544
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.4 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCCcccCCCcEEEEeEecc---CCCCcEEEEEECCcccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVA---VPPVYKVEWRHNNKTLH 48 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~---~~~~~~i~W~~~~~~~~ 48 (207)
....+..|.+++|.|++.- ...+ .+.|..|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a-~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDA-DVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcce-EEEEEeCCcEEe
Confidence 3455677999999999842 2223 688999988774
|
|
| >PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines | Back alignment and domain information |
|---|
Probab=89.11 E-value=2.2 Score=22.86 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=29.1
Q ss_pred EEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 24 YFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 24 ~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
+|+|.....- -+.||-||..+. +....+|++.++ .++|.|+.+
T Consensus 2 tltC~s~~sL---PiswYcN~TRLl-------Rlt~~Tlt~~~l----tcNFtCV~q 44 (71)
T PF11049_consen 2 TLTCPSNASL---PISWYCNGTRLL-------RLTQQTLTVVTL----TCNFTCVGQ 44 (71)
T ss_pred ceecCCCCCC---cccEEECCceee-------eecCCeEeeeee----eEEeeecCC
Confidence 5788765432 478999987654 344556777665 578899765
|
This domain would appear to be the cytoplasmic region of the protein []. |
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=89.10 E-value=5.5 Score=27.23 Aligned_cols=96 Identities=10% Similarity=0.194 Sum_probs=44.4
Q ss_pred cEEEEEECCccccccccC---CeEecC-----CeEEEE-ecCCCCCeeeEEEEeeeCCCCcc----ceEEEEEEeCCccc
Q psy10918 36 YKVEWRHNNKTLHHNIAQ---GIIMTN-----QSLVLQ-RVNRQSAGNYTCVGFNIEGDGES----NAFFLNVMYSPTCK 102 (207)
Q Consensus 36 ~~i~W~~~~~~~~~~~~~---~~~~~~-----~~l~i~-~~~~~d~g~Y~C~~~~~~~~~~~----~~~~l~v~~~~~~~ 102 (207)
..+.|+.|+.++...... ....++ ++|.+. +......-..+|.+.-....... ....-.|+.+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 378999999887642211 111112 234442 22223345788987633322211 12222333333322
Q ss_pred CCCCceeeeeeCCcEEEEEEeccCCCC-ceEEEEEcCce
Q psy10918 103 PHQQRVLGVARQEKVNISCEVDANPPD-VKFSWTFNNSA 140 (207)
Q Consensus 103 ~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~~ 140 (207)
....+ -...|.+.=-|.. ..+.|.-++..
T Consensus 87 -------v~F~~--g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 87 -------VRFED--GYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred -------EEecC--CEEEEEcceeeCCCeEEEEEECCcc
Confidence 11222 2344544433422 59999987654
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily | Back alignment and domain information |
|---|
Probab=88.52 E-value=3.4 Score=24.06 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=47.3
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+....|..|+++.+.|+..=..+. .+.|--.- ..+.. ...-..+.|.+++. | ..-.|.+. -.|..
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~-~~GLET~L~k~~~~~------g~~W~~f~LsnV~~-d-s~~~C~~~-C~g~Q 76 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPE-KIGLETSLSKTELDS------GPQWKAFQLSNVTE-D-SSPLCFFN-CSGEQ 76 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-S-EEEEESSSEEEEEEE------ETTEEEEEEEEE-S-C-EEEEEEEE-ETTEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCC-cceEEEecCCcccCC------CCcEEEEEEEcccc-C-CeEEEEEE-cCCeE
Confidence 344677788999999999997533222 55553211 11110 00113478888875 4 46678876 34555
Q ss_pred ccceEEEEEEeCCc
Q psy10918 87 ESNAFFLNVMYSPT 100 (207)
Q Consensus 87 ~~~~~~l~v~~~~~ 100 (207)
...+..++|+.+|.
T Consensus 77 ~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 77 SSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEB--S
T ss_pred EEeEEeeEEeCCCC
Confidence 56677888887664
|
They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A. |
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=87.38 E-value=4 Score=23.64 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=38.1
Q ss_pred eeeeCCcEEEEEEeccC-C---CCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 110 GVARQEKVNISCEVDAN-P---PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.+..|+.++..|..... . ....+.|..++..+ .....+.. +.+.+..++.+.....+-.|-|...
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i--P~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI--PGSQYRVI-NDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES--TCGCEEEE-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC--ChhHccee-CCeEEEEEEccCCCCCceEEEEEEc
Confidence 46789999999988743 1 22489999887743 23333333 3334667777766666566777643
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=86.89 E-value=4 Score=23.10 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCCCeeeEEEEe
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
...+.....+..|+|.+.|.+.
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEc
Confidence 3456667778899999999995
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=86.45 E-value=4.8 Score=23.60 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=39.2
Q ss_pred cEEEEEEe-ccCCCCceEEEEEc--CceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 116 KVNISCEV-DANPPDVKFSWTFN--NSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 116 ~~~l~C~~-~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.-.|.+ .|.|+. .|+|.-+ |.. +.. .....+++ .+.+.+-.....|.-..+|.+.........++.|
T Consensus 22 v~VA~CiSa~GrPpa-~ItW~t~l~G~~-etq---~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPS-VVRWDTRLKGEA-EFQ---EIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCc-EeEEEccCCCce-eee---eeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 45668984 555665 9999853 221 111 11112222 2345555667778889999999864444334444
|
Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ |
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=7.7 Score=28.04 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=15.8
Q ss_pred cCCCcccCCCcEEEEeEeccC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV 32 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~ 32 (207)
..+..+..|+.+++.|.+...
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCccccCCCceeeeeeeecCC
Confidence 345567789999999998543
|
|
| >PHA03240 envelope glycoprotein M; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=2.5 Score=28.59 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=39.0
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC-----------ccccc-----ccc----------CC--eEecCCeE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN-----------KTLHH-----NIA----------QG--IIMTNQSL 62 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~-----------~~~~~-----~~~----------~~--~~~~~~~l 62 (207)
......+.+|++|+|.-.-...+. ..+.||+.. .++-. +.. .. +.=.+++|
T Consensus 29 ACievt~r~G~nVTLga~~~lhpg-q~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL 107 (258)
T PHA03240 29 ACEEHTTREGDPLLLGGGHGLGAG-QKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTL 107 (258)
T ss_pred hceecccccCCceeeCCcccCCCC-CEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceE
Confidence 344566788999998765332333 389999811 11110 000 00 11235679
Q ss_pred EEEecCCCCCeeeE
Q psy10918 63 VLQRVNRQSAGNYT 76 (207)
Q Consensus 63 ~i~~~~~~d~g~Y~ 76 (207)
.|.++...|.|+|.
T Consensus 108 ~i~~vn~sd~~nYc 121 (258)
T PHA03240 108 IIAHLNLSDAGEYC 121 (258)
T ss_pred EEEEEeecCcchhh
Confidence 99999999999994
|
|
| >cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=84.29 E-value=6.3 Score=23.11 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=36.2
Q ss_pred EEEEeEe-ccCCCCcEEEEEEC--Ccccc--ccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDI-VAVPPVYKVEWRHN--NKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~-~~~~~~~~i~W~~~--~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+.-.|.+ .|.|+. .|.|.-+ |..-. .........-.+.+.+......|.-...|.+....... ..++.|+
T Consensus 23 ~VA~CiSa~GrPpa-~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~-~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPS-VVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRF-TDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCc-EeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccc-cccEEec
Confidence 5568986 556655 9999753 22100 00000011111235555666677778899987653322 3344443
|
Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=6.1 Score=21.43 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=25.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCC--CceEEEEEcCcee
Q psy10918 107 RVLGVARQEKVNISCEVDANPP--DVKFSWTFNNSAE 141 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~ 141 (207)
....+..|..+++.|.+.-.++ ...+.|..|+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3345678999999999874433 3378999888775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 207 | ||||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 5e-07 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 9e-07 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 1e-06 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 2e-05 | ||
| 2xyc_A | 291 | Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | 3e-05 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 3e-04 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 4e-04 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 5e-04 |
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 4e-22
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 16/195 (8%)
Query: 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ 60
E S N +++ V F C+ A Y W N ++L + + N+
Sbjct: 463 SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL--WWVNGQSLPVSPRLQLSNGNR 520
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNIS 120
+L L V R A Y C N S+ L+V+Y P +N+S
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 121 CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
C +NP ++SW N + L + +PN + GT C+ SN
Sbjct: 581 CHSASNPS-PQYSWRINGIP---------QQHTQVLFIAKITPN---NNGTYACFVSNLA 627
Query: 181 GHQRVPCVFHI-VSA 194
+ V I VSA
Sbjct: 628 TGRNNSIVKSITVSA 642
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 5e-19
Identities = 45/200 (22%), Positives = 70/200 (35%), Gaps = 15/200 (7%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PE S N +++ V F C+ Y W NN++L + + N++
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNGNRT 165
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
L L V R +Y C N S++ LNV+Y P E +N+SC
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSC 225
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+NPP ++SW N + + L + + N + G+ C N
Sbjct: 226 HAASNPP-AQYSWFVNGT---------FQQSTQELFIPNITVN---NSGSYTCQAHNSDT 272
Query: 182 HQRVPCVFHIVSAVTFHPPF 201
V I PF
Sbjct: 273 GLNRTTVTTITVYAEPPKPF 292
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 1e-17
Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 15/194 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
S N + ++++ V C+ Y W NN++L + + N++L L V R
Sbjct: 294 TSNNSNPVEDEDAVALTCEPEIQNTTY--LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTR 351
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G Y C N S+ LNV+Y P +++SC +NPP
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPP- 410
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
++SW + + + L + + + G C +N V
Sbjct: 411 AQYSWLIDGN---------IQQHTQELFISNITEK---NSGLYTCQANNSASGHSRTTVK 458
Query: 190 HIVSAVTFHPPFNQ 203
I + P
Sbjct: 459 TITVSAELPKPSIS 472
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-17
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 19/172 (11%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ + ++ C + PP + W + H Q L + + +++G Y
Sbjct: 392 YYRPGVNLSLSCHAASNPPA-QYSWLIDGNIQQHT---------QELFISNITEKNSGLY 441
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKP---HQQRVLGVARQEKVNISCEVDANPPDVKF 132
TC N + S V ++ V +CE +A
Sbjct: 442 TCQANNSASGHSRTT-VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL- 499
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
W N + V+ + TL++ + N D +C N + R
Sbjct: 500 -WWVNGQSLPVSPRLQLSNGNRTLTLFNVTRN---DARAYVCGIQNSVSANR 547
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 4e-13
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 19/177 (10%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
S + ++ C + PP + W N + Q L + +
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPA-QYSWFVNGTFQQ---------STQELFIPNITVN 258
Query: 71 SAGNYTCVGFNIEGDGE-SNAFFLNVMYSPTCKPHQQR--VLGVARQEKVNISCEVDANP 127
++G+YTC N + + + V P KP V ++ V ++CE +
Sbjct: 259 NSGSYTCQAHNSDTGLNRTTVTTITVYAEPP-KPFITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
W NN + V+ + TL++ + D G C N++
Sbjct: 318 TTY--LWWVNNQSLPVSPRLQLSNDNRTLTL---LSVTRNDVGPYECGIQNELSVDH 369
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 6e-11
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 25/190 (13%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG------------------I 55
P ++ E +V + W + + G I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLF-GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 56 IMTNQSLVLQRVNRQSAGNYTCVGFNIE-GDGESNAFFLNVMYSPTCKPHQQRVLGVARQ 114
I N SL++Q + + G YT + + E+ F P V +
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDK 126
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
+ V +CE + W NN + V+ + TL++ + N D + C
Sbjct: 127 DAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN---DTASYKC 181
Query: 175 WGSNKIGHQR 184
N + +R
Sbjct: 182 ETQNPVSARR 191
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 5e-22
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 10/203 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
R + I + C + P + W +N+ L N Q + N +L+++ V R
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPI-DSIVWERDNRALPINRKQ-KVFPNGTLIIENVER 588
Query: 70 QS-AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
S YTCV N EG + + VM P P + + + C V
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDL 648
Query: 129 DVKFSWTFNNSA--ETVNVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ WT + A E + + + + R L++ A + G C N GHQ+
Sbjct: 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS---HAGNFTCHARNLAGHQQF 705
Query: 186 PCVFHIVSAVTF-HPPFNQKLTR 207
++ + P ++ +
Sbjct: 706 TTPLNVYVPPRWILEPTDKAFAQ 728
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 9e-16
Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 15/197 (7%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ F C P V W + K + H+ L ++ V ++ G Y
Sbjct: 354 TVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS--------ESVLRIESVKKEDKGMY 404
Query: 76 TCVGFNIEGDGESNAF-FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
C N E++A L + P + + V + C NP + SW
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISW 463
Query: 135 TFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190
+ + + V Q + +S + + D G C +K+G +
Sbjct: 464 ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN 523
Query: 191 IVSAVTFHPPFNQKLTR 207
+ + +
Sbjct: 524 VYGLPYIRQMEKKAIVA 540
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 1e-11
Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 17/194 (8%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQS--- 71
+ +C P ++ W ++ T ++ I ++ LV +
Sbjct: 50 DFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQ 108
Query: 72 ---AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
A Y C+ N G S + + + + + V R I C + +
Sbjct: 109 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVA 167
Query: 129 DVK--FSWTFNNSAETVNVAQA----HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
D SW + A+ +L SG L + E Y + C +++
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI--REVGPEDGYKSYQCRTKHRLTG 225
Query: 183 QRVPCVFHIVSAVT 196
+ +T
Sbjct: 226 ETRLSATKGRLVIT 239
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-11
Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 19/176 (10%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQ 65
+ S + C P W + + + + +L+++
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIK 311
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
+ +G Y CV N G L V + K V +C+
Sbjct: 312 DAVVEDSGKYLCVVNNSVGGESVET-VLTVTAPLSAKIDPPTQT-VDFGRPAVFTCQYTG 369
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
NP SW + A + L + + D G C+ N
Sbjct: 370 NPI-KTVSWMKDGKAIGHS--------ESVLRIESVKKE---DKGMYQCFVRNDRE 413
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-09
Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 25/219 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNKTLHHNIAQG----IIMTNQSLV 63
+N +H+ + C I + V V W + + + A+ +++ + L
Sbjct: 143 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 202
Query: 64 LQRVNRQ-SAGNYTCVGFNIEGDGESNAFFLNVM---------YSPTCKPHQQRVLGVAR 113
++ V + +Y C + + + + + +
Sbjct: 203 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSG 262
Query: 114 QEKVNISCEVDANPPDVKFSWTFNNSA----ETVNVAQAHILRSGTLSVVAYSPNSELDY 169
+ + C P F W + V + SGTL + D
Sbjct: 263 SSTMALLCPAQGYPV-PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE---DS 318
Query: 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFH-PPFNQKLTR 207
G +C +N +G + V V + + ++ P Q +
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 357
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-08
Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 6/126 (4%)
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRVLGVARQEKVNIS 120
+ + + + V G A P + + I
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 121 CEVDANPPDVKFSWTFNNSAETVNVAQAH-ILRSGTL---SVVAYSPNSELDYGTLICWG 176
C+ NP + W ++ +V I G L A E+ C
Sbjct: 61 CKASGNPM-PEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 177 SNKIGH 182
N+ G
Sbjct: 120 RNQFGS 125
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-----GIIMTNQSLVLQRVNRQS 71
+ SD +C P +V W+ I + +L + + + +
Sbjct: 726 FAQGSDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
G Y C N G G S ++V
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISV 808
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 3e-19
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 5/168 (2%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGNYTC 77
E+ V C++ P + W+ N + + + + SL++ N+ AG Y C
Sbjct: 22 EEKKVKLSCEVKGNPKP-HIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
+ N G S L Y K + + V R + + + C + ++ ++W FN
Sbjct: 81 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 140
Query: 138 NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ + +G L + + D G C +N + + +V
Sbjct: 141 EYPSYQDNRRFVSQETGNLYIAKVEKS---DVGNYTCVVTNTVTNHKV 185
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 6e-14
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 14/197 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
R+ + ++ + C W N + + + + +L + +V +
Sbjct: 107 RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEK 166
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVM---------YSPTCKPHQQRVLGVARQEKVNIS 120
GNYTCV N + + ++ Y P + + + V +
Sbjct: 167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 226
Query: 121 CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
C NP W + + + +G L + + D G+ C N
Sbjct: 227 CFALGNPV-PTILWRRADG-KPIARKARRHKSNGILEIPNFQQE---DAGSYECVAENSR 281
Query: 181 GHQRVPCVFHIVSAVTF 197
G + +
Sbjct: 282 GKNVAKGQLTFYAQPNW 298
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 7e-09
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
H+ + V+++C P W N L I + +L + VN AG Y
Sbjct: 306 HVAMEESVFWECKANGRPKP-TYRWLKNGDPLLTR--DRIQIEQGTLNITIVNLSDAGMY 362
Query: 76 TCVGFNIEGDGESNAFFLNVM 96
CV N G S+A L+V+
Sbjct: 363 QCVAENKHGVIFSSA-ELSVI 382
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 103 PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162
P + ++KV +SCEV NP W N + + + + + G+L + +
Sbjct: 12 PSHVMFPLDSEEKKVKLSCEVKGNPK-PHIRWKLNGTDVDIGMDFRYSVVDGSLLIN--N 68
Query: 163 PNSELDYGTLICWGSNKIG 181
PN D GT C +N G
Sbjct: 69 PNKTQDAGTYQCIATNSFG 87
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 9e-19
Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 8/191 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNRQSAGNY 75
+E++ +C I K W+ + K+ + + ++ SLV R G+Y
Sbjct: 18 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 77
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
C G S Y P + + C + P +W
Sbjct: 78 QCFAETPAGVASSRVISFRKTYLIA-SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWK 136
Query: 136 FNNSAETVNVAQA------HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
S N G L + D +C N + V V
Sbjct: 137 KRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196
Query: 190 HIVSAVTFHPP 200
+ + VT
Sbjct: 197 YEIKGVTKDNS 207
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 4e-14
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVNRQSA 72
K C + P + N K ++ N I + + + L+ + +
Sbjct: 224 AKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
G YTC N G + ++ L V+ +P + ++V+ V + + V I C+V P P+V
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV- 341
Query: 132 FSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W+ N + + L + D G C +N+ G
Sbjct: 342 -VWSHNAKPLS---GGRATVTDSGLVIKGVKNG---DKGYYGCRATNEHG 384
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-10
Identities = 29/185 (15%), Positives = 46/185 (24%), Gaps = 26/185 (14%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG------IIMTNQSLVLQRVNRQSA 72
E DC + P + W+ N + +L V ++
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 173
Query: 73 ---GNYTCVGFNIEGDGESNAFFLNVMYSP------TCKPHQQRVLG---VARQEKVNIS 120
Y C N D E + +P Q V + I
Sbjct: 174 SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIY 233
Query: 121 CEVDANPPDVKFSWTFN----NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
C +NP ++ N N + + + L P D G C
Sbjct: 234 CMYGSNPM-GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE---DEGVYTCEV 289
Query: 177 SNKIG 181
N +G
Sbjct: 290 DNGVG 294
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-09
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSA 72
+K+ DV C + +P V W HN K L +T+ LV++ V
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLSGGR---ATVTDSGLVIKGVKNGDK 372
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y C N GD + V
Sbjct: 373 GYYGCRATNEHGDKYFET-LVQV 394
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-18
Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAGN 74
V C+++ P + W+ N + L+ +++ + +L + R+ +G
Sbjct: 133 AFMGDTVLLKCEVIGDPM-PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV 191
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG-----VARQEKVNISCEVDANPPD 129
Y C N N + ++ P + + + C V PP
Sbjct: 192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP- 250
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
F+W + + +L L + + + D GT C + K +
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD---DSGTYTCVVTYKNENISA 303
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 5e-16
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 12/165 (7%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
E D +C + PP W + + + ++ +L++ V +G YTCV
Sbjct: 235 EGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293
Query: 79 GFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
+ ++A L V+ P P + C V P +W
Sbjct: 294 VTYKNENISASA-ELTVLVPPWFLNHPSNLY---AYESMDIEFECAVSGKPV-PTVNWMK 348
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
N + I+ L ++ + D G C N+ G
Sbjct: 349 NGDVVIPS-DYFQIVGGSNLRILGVVKS---DEGFYQCVAENEAG 389
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-14
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 18/189 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVN-----RQ 70
+V +C + V ++W+ + L + + N SL++Q + +
Sbjct: 33 TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP 92
Query: 71 SAGNYTCVG-FNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G Y C G S + V + + + V + CEV +P
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESIT-AFMGDTVLLKCEVIGDPMP 151
Query: 130 VKFSWTFNNSAETVNVAQA----HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
W N + +N +L SG L + P D G C N +
Sbjct: 152 -TIHWQKNQ--QDLNPIPGDSRVVVLPSGALQISRLQPG---DSGVYRCSARNPASTRTG 205
Query: 186 PCVFHIVSA 194
+ +
Sbjct: 206 NEAEVRILS 214
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E D+ F+C + P V W N + + I+ +L + V + G Y
Sbjct: 323 YAYESMDIEFECAVSGKPVP-TVNWMKNGDVVIPS-DYFQIVGGSNLRILGVVKSDEGFY 380
Query: 76 TCVGFNIEGDGESNAFFLNV 95
CV N G+ +S+A L V
Sbjct: 381 QCVAENEAGNAQSSA-QLIV 399
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 5e-18
Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 20/200 (10%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ- 60
+ + S ++E + C I V W+ N
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267
Query: 61 ------SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVA 112
+L + +G + C N G L V+ P + V
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTT-LEVVDKGFINIFPMINTTVFVN 326
Query: 113 RQEKVNISCEVDANPPDVKFSWTFNNSA-------ETVNVAQAHILRSGTLSVVAYSPNS 165
E V++ E +A P W + N + +++I L +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT- 385
Query: 166 ELDYGTLICWGSNKIGHQRV 185
+ GT SN + +
Sbjct: 386 --EGGTYTFLVSNSDVNAAI 403
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 2e-15
Identities = 33/199 (16%), Positives = 53/199 (26%), Gaps = 27/199 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-------SLVLQRVNR 69
+ + +V + A P +W + N+T N+ L L R+
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G YT + N + + F + V P +L R + C P
Sbjct: 385 TEGGTYTFLVSNSDVNAAIA-FNVYVNTKP-------EILTYDRLVNGMLQCVAAGFPE- 435
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL-----------DYGTLICWGSN 178
W F E A + TL+ + GT+ C N
Sbjct: 436 PTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYN 495
Query: 179 KIGHQRVPCVFHIVSAVTF 197
+G F
Sbjct: 496 DVGKTSAYFNFAFKGNNKE 514
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 2e-15
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 15/181 (8%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGN 74
+ KED+D C + P V + + I ++++ V R
Sbjct: 125 YGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG---VARQEKVNISCEVDANPPDVK 131
C S F L V + P + E+ ++C + V
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 132 FSWTFNNSA-------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
+W NS + + + R TL++ + N D G +C+ +N G
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN---DSGVFMCYANNTFGSAN 300
Query: 185 V 185
V
Sbjct: 301 V 301
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 9e-08
Identities = 18/186 (9%), Positives = 37/186 (19%), Gaps = 19/186 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
++ ++ C V +W + Q + ++ + G Y
Sbjct: 47 IVRVGDEIRLLC--TDPGFV---KWTFEILDETNENKQN------EWITEKAEATNTGKY 95
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
TC + G S F+ + C + +S
Sbjct: 96 TCTNKH--GLSNSIYVFVRDPAKLFLVDRSLY---GKEDNDTLVRCPLTDPEVTN-YSLK 149
Query: 136 FNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195
+ + + S L C + V
Sbjct: 150 GCQGKPLPKDLRFIPDPKAGIMI--KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA 207
Query: 196 TFHPPF 201
P
Sbjct: 208 FKAVPV 213
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 7e-18
Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 7/167 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
V + PP +++W N L N I L + V+ + GNYT
Sbjct: 342 ATVGERVRIPAKYLGYPP-PEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYT 397
Query: 77 CVGFNIEGDGESNA-FFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS 133
+ N + + L V P K V ++C V A PP
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
W + E N + + + + G I N+
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQF 504
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 6e-14
Identities = 35/208 (16%), Positives = 62/208 (29%), Gaps = 23/208 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQS------- 61
+ + + +C W + + H + QS
Sbjct: 229 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 288
Query: 62 ---LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEK 116
L + V R G YTC + +++ F + V P + ++ E+
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF-VRVHEKPFVAFGSGMESLVEATVGER 347
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
V I + PP + W N N I L+++ S D G
Sbjct: 348 VRIPAKYLGYPPP-EIKWYKNGIPLESNH---TIKAGHVLTIMEVSER---DTGNYTVIL 400
Query: 177 SNKIGHQRVPCVFHIVSAVTFHPPFNQK 204
+N I ++ V +V V P +K
Sbjct: 401 TNPISKEKQSHVVSLV--VYVPPQIGEK 426
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 2e-13
Identities = 21/186 (11%), Positives = 56/186 (30%), Gaps = 12/186 (6%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
++ V C + R+ K + + + + + AG C
Sbjct: 141 NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 200
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKP---HQQRVLGVARQEKVNISCEVDANP-PDVKFS 133
+ +S ++ V+ + ++ EK+ ++C + F+
Sbjct: 201 EAKINDESYQSIM-YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPN-------SELDYGTLICWGSNKIGHQRVP 186
W + +S L++ + S + + + D G C S+ + ++
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 187 CVFHIV 192
+
Sbjct: 320 TFVRVH 325
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 9e-12
Identities = 30/247 (12%), Positives = 54/247 (21%), Gaps = 58/247 (23%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS------------ 61
D + + C + A+PP + + W + N +
Sbjct: 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491
Query: 62 -----------------------LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYS 98
L + Y C N G GE +V
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI-SFHVTRG 550
Query: 99 PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNS-----------AETVNVAQ 147
P QE V++ C D + +W
Sbjct: 551 PEITLQPDMQ--PTEQESVSLWCTADRSTF-ENLTWYKLGPQPLPIHVGELPTPVCKNLD 607
Query: 148 AHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQRVPCVFHIVSAVTFHP 199
+ T+ + + + D G +C ++ +R V + P
Sbjct: 608 TLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP 667
Query: 200 PFNQKLT 206
L
Sbjct: 668 TITGNLE 674
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 2e-11
Identities = 27/203 (13%), Positives = 49/203 (24%), Gaps = 31/203 (15%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--------------- 58
E V C + W +
Sbjct: 558 DMQPTEQESVSLWCTADRSTF-ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATM 616
Query: 59 -------NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG- 110
+ L+ + Q G+Y C+ + + + P L
Sbjct: 617 FSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV-VRQLTVLERVAPTITGNLEN 675
Query: 111 --VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168
+ E + +SC NPP + W +N + + L++ D
Sbjct: 676 QTTSIGESIEVSCTASGNPP-PQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE---D 731
Query: 169 YGTLICWGSNKIGHQRVPCVFHI 191
G C + +G +V F I
Sbjct: 732 EGLYTCQACSVLGCAKVEAFFII 754
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 4e-10
Identities = 19/194 (9%), Positives = 47/194 (24%), Gaps = 18/194 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-----SLVLQRVNRQS 71
IK ++ + C + +W N + + +L + +V
Sbjct: 43 IKANTTLQITC--RGQRDL---DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGND 97
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR----VLGVARQEKVNISCEVDANP 127
G Y C + ++ SP + + + + V I C +
Sbjct: 98 TGAYKCFYRETDL-ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISN 156
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187
+V + + + ++ G + C +
Sbjct: 157 LNVSLCARYPEKRFVPDGNRISWDSKKGFTI---PSYMISYAGMVFCEAKINDESYQSIM 213
Query: 188 VFHIVSAVTFHPPF 201
+V +
Sbjct: 214 YIVVVVGYRIYDVV 227
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 6e-10
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+L + C PP ++ W +N+TL + + N++L ++RV +
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRK 729
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
+ G YTC ++ G + A F + +
Sbjct: 730 EDEGLYTCQACSVLGCAKVEA-FFIIEGAQ 758
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 1e-17
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 19/180 (10%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--------IAQGIIMTNQSL 62
+L +K ++ C V V + + W NK L ++
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKP-HQQRVLGVARQEKVNISC 121
+ V R G YTC + + ++ + + + E+ S
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
A P ++ +WTF+ ++ Q + ++S N + G I N
Sbjct: 349 RFKAYPQ-IRCTWTFSR--KSFPCEQKGLDNGYSISK---FCNHKHQPGEYIFHAENDDA 402
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-12
Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 19/179 (10%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH-HNIAQGIIMTNQSLVLQRVNRQS 71
P K ++ C +VP VEW + ++ + VL +
Sbjct: 147 RPYFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELF--- 202
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
+ C N G + F +++ +P Q + E + I C+
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF---LKVGEPLWIRCKAVHVNHGFG 259
Query: 132 FSWTFNNSA--------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+W N A + ++R V + + N D G C S
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN---DTGYYTCSSSKHPSQ 315
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 2e-12
Identities = 27/199 (13%), Positives = 49/199 (24%), Gaps = 26/199 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I + + F A P + + W + K+ Q + S+ ++ G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCE--QKGLDNGYSISKFCNHKHQPGEYI 394
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-------- 128
N + F LN+ P +A SC D P
Sbjct: 395 FHAENDDAQFTKM-FTLNIRRKPQV---------LAEASASQASCFSDGYPLPSWTWKKC 444
Query: 129 ---DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ + + + S + S + C N +G
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAI--KGFLVKCCAYNSLGTSCE 502
Query: 186 PCVFHIVSAVTFHPPFNQK 204
+ + F K
Sbjct: 503 TILLNSPGPFPFIQDGGTK 521
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 5e-11
Identities = 19/168 (11%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TNQSLVLQRVNRQSAGNY 75
+ + + + A + W + +L+ + S+V+ ++ AG Y
Sbjct: 60 VDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
+ + F +++ + + + + + C ++ P W
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF--RKMENQDALVCISESVPE-PIVEWV 174
Query: 136 FNNS-AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+S E+ +++ + EL + C N++G
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVL------HELFGTDIRCCARNELGR 216
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-17
Identities = 24/177 (13%), Positives = 43/177 (24%), Gaps = 10/177 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E + C I V + ++++ + Y
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY 159
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPH---QQRVLGVARQEKVNISCEVDANPPDVKF 132
C + S +L V P + L R E I C
Sbjct: 160 VCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV 219
Query: 133 SWTFNNSA----ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
++ + + + LS+ A D G C SN +G +
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ---DAGIYSCVASNDVGTRTA 273
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 4e-12
Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 12/184 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
++ V C VEW +L + ++ G Y
Sbjct: 16 VEPGETVTLRCVSNG-----SVEWDGPISPY---WTLDPESPGSTLTTRNATFKNTGTYR 67
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C G + L V + + V ++ + C + S
Sbjct: 68 CTELEDPMAGSTTI-HLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMR 126
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVT 196
+ + + D T +C ++ V+ V
Sbjct: 127 EGGRQVLRKTVYFFSPWRGFIIRKAKVL---DSNTYVCKTMVNGRESTSTGIWLKVNRVH 183
Query: 197 FHPP 200
PP
Sbjct: 184 PEPP 187
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-07
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNK----TLHHNIAQGIIMTNQSLVLQRVNRQSA 72
C + V + + L+ + ++L L V+ Q A
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDA 257
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
G Y+CV N G + V+ S H
Sbjct: 258 GIYSCVASNDVGTRTATM-NFQVVESHHHHHHH 289
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 1e-17
Identities = 37/209 (17%), Positives = 60/209 (28%), Gaps = 15/209 (7%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK----TLHHNIAQGIIM 57
L ++D + C P V W K G +
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 58 TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKV 117
L + C+ + + LNV Y P ++ V
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLT-LNVQYEPEVTIEGFDGNWYLQRMDV 250
Query: 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177
++C+ DANPP ++ WT N + V ++ TL P + GT IC +
Sbjct: 251 KLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFK--GPINYSLAGTYICEAT 304
Query: 178 NKIGHQRVPCVFHIVSAVTFHPPFNQKLT 206
N IG + + +T
Sbjct: 305 NPIGTRSGQ----VEVNITEAAALEHHHH 329
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-09
Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 28/191 (14%)
Query: 19 EDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHNIAQ--------------------GI 55
+DV C P + +V W+ + N+A
Sbjct: 28 IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRP 87
Query: 56 IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP----TCKPHQQRVLGV 111
T+ ++ L R+ + G Y C + L VM P R
Sbjct: 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKG 147
Query: 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT-LSVVAYSPNSELDYG 170
+ + +C P SW E + + T +S P+ E
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQ 207
Query: 171 TLICWGSNKIG 181
+L C + +
Sbjct: 208 SLACIVNYHMD 218
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-17
Identities = 29/192 (15%), Positives = 46/192 (23%), Gaps = 12/192 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ED D C + V + R + +Y
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQ 160
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPH---QQRVLGVARQEKVNISCEVDANPPDVKFS 133
C S + L V P L R E I C + +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 134 WTFNNSA----ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
NN+ + + + TL++ G C SN G F
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ---HAGNYSCVASNVQGKHSTSMFF 277
Query: 190 HIV--SAVTFHP 199
+V + + H
Sbjct: 278 RVVESAGNSHHH 289
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-12
Identities = 22/184 (11%), Positives = 39/184 (21%), Gaps = 12/184 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+K + V C VEW + ++ L Q+ G Y
Sbjct: 16 VKPGATVTLRCVGNG-----SVEWDGPPSP---HWTLYSDGSSSILSTNNATFQNTGTYR 67
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C G + L V + + V + + C + + S
Sbjct: 68 CTEPGDPLGGSAAI-HLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVR 126
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVT 196
+ ++ C + V V
Sbjct: 127 VRGRPLMRHTNYSFSPWHGFTIHRAKFI---QSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Query: 197 FHPP 200
PP
Sbjct: 184 PGPP 187
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 2e-17
Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 24/176 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
L P ++ ++ V C P ++W HN + Q + N
Sbjct: 8 KLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPSYRFKAN 59
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G YTC S+ L V++ E + + C + P
Sbjct: 60 NNDSGEYTCQ---TGQTSLSDPVHLTVLFEWLVLQTPHLE--FQEGETIMLRCHSWKDKP 114
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
VK ++ N +Q T S+ + + G C G+
Sbjct: 115 LVKVTFFQN------GKSQKFSHLDPTFSIPQANHS---HSGDYHCTGNIGYTLFS 161
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-12
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+E + C P+ KV + N K+ + + + + + N +G
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH------LDPTFSIPQANHSHSG 147
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
+Y C G S + V
Sbjct: 148 DYHCTGNIGYTLFSSKPVTITV 169
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 1e-16
Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 19/181 (10%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--------IMTNQSL 62
+L +K ++ C V V + + W NK L + ++
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNISC 121
+ V R G YTC + + ++ + + + E+ S
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
A P ++ +WTF+ ++ Q + ++S N + G I N
Sbjct: 349 RFKAYPQ-IRCTWTFSR--KSFPCEQKGLDNGYSISK---FCNHKHQPGEYIFHAENDDA 402
Query: 182 H 182
Sbjct: 403 Q 403
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 1e-12
Identities = 21/193 (10%), Positives = 56/193 (29%), Gaps = 15/193 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-IAQGIIMTNQSLVLQRVNRQSAGNY 75
+ + + + A + W + +L+ S+V+ ++ AG Y
Sbjct: 60 VDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSW 134
+ + F +++ + + + + + C ++ P P V W
Sbjct: 119 LLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYF--RKMENQDALVCISESVPEPIV--EW 173
Query: 135 TFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193
+S E+ +++ + D C N++G + ++
Sbjct: 174 VLCDSQGESCKEESPAVVKKEEKVL---HELFGTDI---RCCARNELGRECTRLFTIDLN 227
Query: 194 AVTFHPPFNQKLT 206
L
Sbjct: 228 QTPQTTLPQLFLK 240
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I + + F A P + + W + K+ + S+ ++ G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYI 394
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
N + LN+
Sbjct: 395 FHAENDDAQFTKMF-TLNIRSGT 416
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-16
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 12/176 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-NIAQGIIMTNQSLVLQRVNRQSAGN 74
KE D CD+V+ P + W+H + + + I+++N L ++ + + G
Sbjct: 111 EFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 169
Query: 75 YTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRV-LGVARQEKVNISCEVDANPPDVKF 132
Y C G + + + V PT + Q V + V + C+ D P
Sbjct: 170 YRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TM 228
Query: 133 SWTFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
SWT + + E + S L++ N D +C NK G Q
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN---DEAEYVCIAENKAGEQD 281
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-15
Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 15/192 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-----NQSLVLQRVNRQS 71
I +F C + + W N Q I + + +L + N
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDV 130
AG Y CV +G + + K E I C+V ++ P +
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTI 132
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
W + +L + L + D GT C G +
Sbjct: 133 --IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT---DEGTYRCEGRILARGEINFKDI 187
Query: 190 HIVSAVTFHPPF 201
++ V P
Sbjct: 188 QVI--VNVPPTV 197
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-06
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSAGN 74
V CD P + W + + + + + L ++ V++
Sbjct: 210 LGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE 268
Query: 75 YTCVGFNIEGDGESNAFFLNVM 96
Y C+ N G+ +++ L V
Sbjct: 269 YVCIAENKAGEQDASI-HLKVF 289
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-16
Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 26/193 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+L P + ++ V C+++ +P +W N + S + +
Sbjct: 5 TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------TPSYRITSAS 56
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G Y C G S+ L + RV E + + C +
Sbjct: 57 VNDSGEYRCQR---GLSGRSDPIQLEIHRGWLLLQVSSRV--FTEGEPLALRCHAWKDKL 111
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188
+ N A + L+++ + + GT C G K +
Sbjct: 112 VYNVLYYRNGKAFKFFH------WNSNLTILKTNIS---HNGTYHCSGMGKHRYTSAG-- 160
Query: 189 FHIVSAVTFHPPF 201
+ F P
Sbjct: 161 ISVTVKELFPAPV 173
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 8e-16
Identities = 27/172 (15%), Positives = 44/172 (25%), Gaps = 13/172 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
E + C VY V + N K N +L + + N G
Sbjct: 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHNG 144
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ-EKVNISCEVDANPPDVKF 132
Y C G S + V V + V +SCE
Sbjct: 145 TYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGL 203
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
F+ + + + S ++ D G C + + G+
Sbjct: 204 QLYFSFYMGSKTLRGRN--TSSEYQILTARRE---DSGLYWCEAATEDGNVL 250
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-16
Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 7/188 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+K+D ++C I P + KV W + + + + L + ++ + +G+
Sbjct: 303 VKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
YTC N G S+ L V P + V + V++ CE+ PP + SW
Sbjct: 362 YTCEAHNAAGSASSST-SLKVKEPPVFRKKPHPVE-TLKGADVHLECELQGTPP-FQVSW 418
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194
+ E + + I+ L+ + D G C SN +G + +
Sbjct: 419 HKDKR-ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477
Query: 195 VTFHPPFN 202
F +
Sbjct: 478 PRFVKKLS 485
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 5e-16
Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 11/195 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGN 74
+ F C + P+ K+ W +N+ + + + +L + +V + AG
Sbjct: 209 LALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
YTC N+ G +A L V P + V + E C++ +P +K W
Sbjct: 268 YTCYASNVAGKDSCSAQ-LGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLW 325
Query: 135 TFNNS--AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192
+ + E+ + + L + S D G C N G +
Sbjct: 326 YKDETEIQESSKFRMSFVESVAVLEMYNLSVE---DSGDYTCEAHNAAGSASSSTSLKVK 382
Query: 193 SAVTF-HPPFNQKLT 206
F P +
Sbjct: 383 EPPVFRKKPHPVETL 397
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-14
Identities = 40/218 (18%), Positives = 64/218 (29%), Gaps = 26/218 (11%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIMTN 59
+ + R L H V F+C I P+ +V W + + L + + I
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNV 156
Query: 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG---VARQEK 116
+L + + ++ G Y C N G S+A L + P +A E
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSA-KLTLSEHEV-PPFFDLKPVSVDLALGES 214
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------D 168
C V P +K +W +N I G + + L D
Sbjct: 215 GTFKCHVTGTAP-IKITWAKDN---------REIRPGGNYKMTLVENTATLTVLKVTKGD 264
Query: 169 YGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKLT 206
G C+ SN G + F
Sbjct: 265 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 302
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 9e-14
Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 15/204 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRV 67
L + C + P + ++ W + L A + N SLV+ +V
Sbjct: 10 EPLEHVEAAIGEPITLQCKVDGTPEI-RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKV 68
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVD 124
+ G YTC N G S+A L + P+ + V V C ++
Sbjct: 69 DHSDVGEYTCKAENSVGAVASSA-VLVIKERKLPPSFARKLKDVH-ETLGFPVAFECRIN 126
Query: 125 ANPPDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ P ++ SW + + N+ + I TL ++ + G C SN +G
Sbjct: 127 GSEP-LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS---HVGQYNCSASNPLGT 182
Query: 183 QRVPCVFHIVSAVTFHPPFNQKLT 206
+S P F+ K
Sbjct: 183 ASSSAKLT-LSEHEVPPFFDLKPV 205
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-13
Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 20/174 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
+ +DV+ +C++ PP +V W + + L + I S+ + V+
Sbjct: 396 TLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIMSE--NFLTSIHILNVDSADI 452
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N G + + P K + E+V + ++ P +
Sbjct: 453 GEYQCKASNDVGSDTCVG-SITLKAPPRFVKKLSDISTV---VGEEVQLQATIEGAEP-I 507
Query: 131 KFSWTFNN---SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W + E+ N+ ++ TL P + G C N+ G
Sbjct: 508 SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA---NAGKYTCQIKNEAG 558
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRVNRQSAG 73
+V I P+ V W + + I ++ +L R +AG
Sbjct: 489 TVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 74 NYTCVGFNIEGDGESNAFFLNVM 96
YTC N G E A L+V+
Sbjct: 548 KYTCQIKNEAGTQECFA-TLSVL 569
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 6e-16
Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 17/192 (8%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQSA 72
P KEDSD C + P V + + K+L ++ +
Sbjct: 100 PLFGKEDSDALVRC-PLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR 158
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH---QQRVLGVARQEKVNISCEVDANPPD 129
C S+ F L V + P + + + + + C +
Sbjct: 159 LCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218
Query: 130 VKFSWTFNNSA---------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
V W N + + + R TL++ + + D G +C+ +N
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD---DSGVFMCYANNTF 275
Query: 181 GHQRVPCVFHIV 192
G V +V
Sbjct: 276 GSANVTTTLKVV 287
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 4e-08
Identities = 14/165 (8%), Positives = 33/165 (20%), Gaps = 13/165 (7%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96
V W + + ++ G YTC N G +++ ++ V
Sbjct: 39 FVRWTFKTYFNEMVENKK-----NEWIQEKAEATRTGTYTCSNSN----GLTSSIYVFVR 89
Query: 97 YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156
+ + C + +S + +
Sbjct: 90 DPAKLFLVGLPLF-GKEDSDALVRCPLTDPQVSQ-YSLIECDGKSLPTDLTFVPNPKAGI 147
Query: 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201
++ + + C V P
Sbjct: 148 TI--KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV 190
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 7e-16
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 13/178 (7%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-----HHNIAQGIIMTNQSLVLQRV 67
+ + C P ++ W + + G + +L
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Query: 68 NRQSAGNYTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN 126
++ N TC + + L V Y P Q + ++C+ +N
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN 244
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
P ++W+ + + + L + P + TLIC +N +G ++
Sbjct: 245 PEPTGYNWSTTMGP----LPPFAVAQGAQLLI---RPVDKPINTTLICNVTNALGARQ 295
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 4e-12
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ + ++ CD + P W L + L+++ V++
Sbjct: 222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL----PPFAVAQGAQLLIRPVDK 277
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNV 95
C N G ++ + V
Sbjct: 278 PINTTLICNVTNALGARQAE-LTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-09
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 21 SDVYFDCDIVAVPP----VYKVEWRHNNKTLHHNI--------------------AQGII 56
V C + V ++ W + ++ + G
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 57 MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
+ N SL + + + GNYTC+ S +L V+ P Q+V + +
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPV 134
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA---YSPNSELDYGTLI 173
C P + +W ++ N +Q SGT++V + P+S++D +
Sbjct: 135 PMARCVSTGGRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT 193
Query: 174 CWGSNKIG 181
C ++
Sbjct: 194 CKVEHESF 201
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 7e-16
Identities = 40/170 (23%), Positives = 60/170 (35%), Gaps = 14/170 (8%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-QSLVLQRVNRQSAGN 74
+ F C + + P ++ W N + + I N Q L + V G
Sbjct: 18 DALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGI 76
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
Y C N G + L V P T P +++ K + C NP P V
Sbjct: 77 YCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII---EGLKAVLPCTTMGNPKPSV- 132
Query: 132 FSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW +SA N ++ +L SG+L + D G C N +G
Sbjct: 133 -SWIKGDSALREN-SRIAVLESGSLRIHNVQKE---DAGQYRCVAKNSLG 177
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-09
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
I E C + P V W + L N ++ ++ + SL + V ++ AG Y
Sbjct: 111 KIIEGLKAVLPCTTMGNPK-PSVSWIKGDSALREN-SRIAVLESGSLRIHNVQKEDAGQY 168
Query: 76 TCVGFNIEGDGESNAFFLNVM 96
CV N G S L V
Sbjct: 169 RCVAKNSLGTAYSKLVKLEVE 189
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 9e-16
Identities = 28/176 (15%), Positives = 48/176 (27%), Gaps = 24/176 (13%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-----------AQGIIMTNQSLVLQRV 67
C + +V W + + L Q + L + +
Sbjct: 16 RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDA 125
G Y C+ F S ++ + P +P + VA N+SC+
Sbjct: 76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRT---VAANTPFNLSCQAQG 132
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P V W + + A H +L V + + C N G
Sbjct: 133 PPEPVDLLWLQDA--VPLATAPGH-GPQRSLHVPGLN-----KTSSFSCEAHNAKG 180
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-08
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ C P + W + L G L +++
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-----QRSLHVPGLNKTSSFS 172
Query: 77 CVGFNIEGDGESNAFFLNV 95
C N +G S + V
Sbjct: 173 CEAHNAKGVTTSRTATITV 191
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 1e-15
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 7/168 (4%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGNYT 76
+ V C A PP W+ N L + LV+ + AG+Y
Sbjct: 20 SAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
CV N G S L + ++ + + V +C + P + + W
Sbjct: 79 CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL 138
Query: 137 NNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
N + +G L + + D G C+ ++ I
Sbjct: 139 NEFPNFIPADGRRFVSQTTGNLYIAKTEAS---DLGNYSCFATSHIDF 183
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-11
Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 17/168 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ V +C P +++WR + + + + L +Q V+ + G Y
Sbjct: 218 YALTGQMVTLECFAFGNPVP-QIKWRKLDGSQT----SKWLSSEPLLHIQNVDFEDEGTY 272
Query: 76 TCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS 133
C NI+G + + P + SC P
Sbjct: 273 ECEAENIKGRDTYQG-RIIIHAQPDWLDVITDTE---ADIGSDLRWSCVASGKPR-PAVR 327
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + + + + G L D G C NK G
Sbjct: 328 WLRD--GQPLASQNRIEVSGGELRFSKLVLE---DSGMYQCVAENKHG 370
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-10
Identities = 34/208 (16%), Positives = 55/208 (26%), Gaps = 23/208 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRV 67
+P I E V F C P W N + T +L + +
Sbjct: 106 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKT 165
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFF----------LNVMYSPTCKPHQQRVLGVARQEKV 117
GNY+C + + F Y+P+ K + V
Sbjct: 166 EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV 225
Query: 118 NISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
+ C NP P + W + ++T + L + D GT C
Sbjct: 226 TLECFAFGNPVPQI--KWRKLDGSQTSKW----LSSEPLLHIQNVDFE---DEGTYECEA 276
Query: 177 SNKIGHQRVPCVFHIVSAVTF-HPPFNQ 203
N G I + + +
Sbjct: 277 ENIKGRDTYQGRIIIHAQPDWLDVITDT 304
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 6e-09
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
SD+ + C P V W + + L I ++ L ++ + +G Y
Sbjct: 305 EADIGSDLRWSCVASGKPRP-AVRWLRDGQPLASQ--NRIEVSGGELRFSKLVLEDSGMY 361
Query: 76 TCVGFNIEGDGESNAFFLNV 95
CV N G ++A L V
Sbjct: 362 QCVAENKHGTVYASA-ELTV 380
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 103 PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162
P + +EKV ++C ANPP + W N + + + L +G L V +
Sbjct: 11 PAHTLFPEGSAEEKVTLTCRARANPP-ATYRWKMNGTELKMGPDSRYRLVAGDL--VISN 67
Query: 163 PNSELDYGTLICWGSNKIG 181
P D G+ C +N G
Sbjct: 68 PVKAKDAGSYQCVATNARG 86
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 1e-15
Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 17/182 (9%)
Query: 19 EDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
S + C + V W L + G Q + + G Y+C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVDSDDQWGEYSC 66
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
V + + P K + + E + C+ ++ PP ++W
Sbjct: 67 VFLP----EPMGTANIQLHGPPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 138 NSAETVNVAQAHILR------SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191
+E + R G + + N E D G C G++ G + +
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Query: 192 VS 193
S
Sbjct: 182 RS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-----IIMTNQ---SLVL 64
+ +HI E C +VPPV W + + G + ++Q L +
Sbjct: 91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHI 150
Query: 65 QRVNRQS-AGNYTCVGFNIEGDGESNAFFLNVMY 97
+ +N ++ G Y C G + +G ++ L V
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAII-TLRVRS 183
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-15
Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 31/202 (15%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
L P + E V C P +W HN + S +
Sbjct: 11 FLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------ASSYFIDAAT 62
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G Y C + S+ L V + V ++ +++ C N
Sbjct: 63 VDDSGEYRC---QTQLSTLSDPVQLEVHIGWLLLQAPRWV--FKEEDPIHLRCHSWKNTA 117
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR---- 184
K ++ N + + + D G+ C G +
Sbjct: 118 LHKVTYLQNGKGRKYFH------HNSDFYIPKATLK---DSGSYFCRGLVGSKNVSSETV 168
Query: 185 ---VPCVFHIVSAVTFHPPFNQ 203
+ + + +F PP Q
Sbjct: 169 QITITQGLAVSTISSFFPPGYQ 190
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-15
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 11/169 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+K+D ++C I P + KV W + + + + L + ++ + +G+
Sbjct: 111 VKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
YTC N G S+ L V P KPH + V++ CE+ PP +
Sbjct: 170 YTCEAHNAAGSASSSTS-LKVKEPPVFRKKPHPVET---LKGADVHLECELQGTPP-FQV 224
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW + + I+ L+ + D G C SN +G
Sbjct: 225 SWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 5e-15
Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 17/199 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ F C + P+ K+ W +N+ + N ++ +L + +V + AG
Sbjct: 17 LALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 75
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
YTC N+ G +A L V P K R+ V + E C++ +P V
Sbjct: 76 YTCYASNVAGKDSCSA-QLGVQEPPRFIKKLEPSRI--VKQDEHTRYECKIGGSPEIKV- 131
Query: 132 FSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
W + + E+ + + L + S D G C N G
Sbjct: 132 -LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE---DSGDYTCEAHNAAGSASSSTSL 187
Query: 190 HIVSAVTF-HPPFNQKLTR 207
+ F P + +
Sbjct: 188 KVKEPPVFRKKPHPVETLK 206
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGN 74
+ +DV+ +C++ PP +V W + + L I+ N S+ + V+ G
Sbjct: 204 TLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 262
Query: 75 YTCVGFNIEGDGESNAFFLNV 95
Y C N G + +
Sbjct: 263 YQCKASNDVGSYTCVG-SITL 282
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-15
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 15/180 (8%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRV 67
L +++ S+ C + P V+W K + + + I + L++ V
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT-CKPHQQRVLG---VARQEKVNISCEV 123
A Y N G A L V P +G R E V+I
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 124 DANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL-DYGTLICWGSNKIG 181
P P + W N ++ + + + + + E D G + N+ G
Sbjct: 129 SGKPDPVIT--WQKGQDLIDNN-GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSA 72
H V P + W+ + +N +I+T + V R+ A
Sbjct: 115 HALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y N G + L+V
Sbjct: 174 GFYVVCAKNRFGIDQKTV-ELDV 195
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 3e-15
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 17/173 (9%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
V C++ + + W N L +N + + + +G Y
Sbjct: 15 RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKNASNMEYRINKPRAEDSGEY 71
Query: 76 TCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS 133
CV ++ ++NA + V +P T + + + C+ P ++
Sbjct: 72 HCV-YHFVSAPKANA-TIEVKAAPDITGHKRSEN---KNEGQDAMMYCKSVGYPH-PEWM 125
Query: 134 WTFNNSAETVNVAQA----HILRSGTLSVVA-YSPNSELDYGTLICWGSNKIG 181
W + ++ + I+ + + + D G C +N IG
Sbjct: 126 WRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 9e-05
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI----IM---TNQSLVLQRVN 68
+ E D C V P + WR + I+ I+ L + +
Sbjct: 103 NKNEGQDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161
Query: 69 RQS-AGNYTCVGFNIEGDGESNAFFLNV 95
G Y C N G + L V
Sbjct: 162 ITEDPGEYECNATNSIGSASVST-VLRV 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 3e-15
Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 15/173 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-----NQSLVLQRVNRQS 71
I +F C + + W N Q I + + +L + N
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPD 129
AG Y CV +G + + P Q E I C+V ++ P
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFK---EGEDAVIVCDVVSSLP- 129
Query: 130 VKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + + +L + L + D GT C G
Sbjct: 130 PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT---DEGTYRCEGRILAR 179
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVNRQSAGNY 75
KE D CD+V+ P + W+H + + +++N L ++ + + G Y
Sbjct: 112 FKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTY 170
Query: 76 TCVGFNIEGDGESNAFFLNVM 96
C G + GE N + V+
Sbjct: 171 RCEGRILAR-GEINFKDIQVI 190
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-15
Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 20/172 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ + V +C + + ++W + + + I ++ Q L L+ V R A
Sbjct: 14 VSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C + S +L V P T +P V +SCE P V
Sbjct: 73 GRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLA---VPPNAPFQLSCEAVGPPEPV 129
Query: 131 KFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
W + +L ++ C N G
Sbjct: 130 TIVWWRGTTKIGGPAPSPSVLNVTGVT----------QSTMFSCEAHNLKGL 171
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 9e-10
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ C+ V P + W + VL + ++
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGVTQSTMFS 162
Query: 77 CVGFNIEGDGESNAFFLNV 95
C N++G S +++
Sbjct: 163 CEAHNLKGLASSRTATVHL 181
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 7e-15
Identities = 25/176 (14%), Positives = 44/176 (25%), Gaps = 24/176 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
L P + E V C P +W HN + S +
Sbjct: 11 FLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------ASSYFIDAAT 62
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G Y C S+ L V + V ++ +++ C N
Sbjct: 63 VNDSGEYRC---QTNLSTLSDPVQLEVHIGWLLLQAPRWV--FKEEDPIHLRCHSWKNTA 117
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
K ++ N + + + D G+ C G +
Sbjct: 118 LHKVTYLQNGKDRKYFH------HNSDFHIPKATLK---DSGSYFCRGLVGSKNVS 164
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 7e-10
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
KE+ ++ C ++KV + N K N + + + +G
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK------YFHHNSDFHIPKATLKDSG 150
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYS 98
+Y C G + S + + +
Sbjct: 151 SYFCRGLVGSKNVSSETVNITITQA 175
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 8e-15
Identities = 28/195 (14%), Positives = 60/195 (30%), Gaps = 23/195 (11%)
Query: 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SL 62
+S I E V F + KV + N K + + + +
Sbjct: 4 PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCK--------------PHQQRV 108
++++ + G YT + + S + ++ K PH
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 123
Query: 109 LG--VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166
L V + V + C+V + W + ++V + H + G +++ + +
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDE--REISVDEKHDFKDGICTLLITEFSKK 181
Query: 167 LDYGTLICWGSNKIG 181
D G + G
Sbjct: 182 -DAGIYEVILKDDRG 195
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 3e-10
Identities = 9/74 (12%), Positives = 28/74 (37%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + +V C + + + W + + + + +L++ +++ AG Y
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYE 187
Query: 77 CVGFNIEGDGESNA 90
+ + G +S
Sbjct: 188 VILKDDRGKDKSRL 201
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-14
Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 10/182 (5%)
Query: 4 TRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSL 62
+ LT ++P K+ D C + + P V W ++N+ + ++ N +L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 63 VLQRVNRQSAGNYTCVGFNI-EGDGESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNIS 120
+ +N+ G Y C G G+ + + V P P + R E++ S
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 121 CEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
C +P P + SW N N + L+V + D G +C +NK
Sbjct: 120 CRASGSPEPAI--SWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNK 174
Query: 180 IG 181
G
Sbjct: 175 AG 176
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 8e-10
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ F C P + W N K + N + +N L ++ + G Y
Sbjct: 110 AERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 168
Query: 77 CVGFNIEGDGESNAFFLNV 95
C N G+ E A FL V
Sbjct: 169 CRATNKAGEDEKQA-FLQV 186
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-14
Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 9/194 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVN----RQ 70
+ ++ +C+ P W N++ + + M + +LV+ + +
Sbjct: 29 VDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N G SN L V SP + V + + C P
Sbjct: 88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP 147
Query: 131 KFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190
W ++ + +G L C H
Sbjct: 148 VIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD--MQTDYSCNARFHFTHTIQQKNPF 205
Query: 191 IVSAVTFHPPFNQK 204
+ +T +
Sbjct: 206 TLKVLTTRGVAERT 219
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-12
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ D+ +C VP + W L + A+ N++L + V+ + +G Y
Sbjct: 234 VLRGMDLLLECIASGVPTP-DIAWYKKGGDLPSDKAK-FENFNKALRITNVSEEDSGEYF 291
Query: 77 CVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
C+ N G + V +P +P +A E + C + NP W
Sbjct: 292 CLASNKMGSIRHTI-SVRVKAAPYWLDEPKNLI---LAPGEDGRLVCRANGNPK-PTVQW 346
Query: 135 TFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
N ++ + T+ + C SN+ G
Sbjct: 347 MVNGEPLQSAPPNPNREVAGDTIIFRDTQIS---SRAVYQCNTSNEHG 391
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-10
Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 18/211 (8%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+L+P ++E + + C+ P + W ++ + N L V
Sbjct: 121 ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVML 180
Query: 70 Q-SAGNYTCVGFNIEGD--GESNAFFLNVMYSPTCK---------PHQQRVLGVARQEKV 117
Q +Y+C + N F L V+ + V R +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177
+ C P +W + A+ + L + S D G C S
Sbjct: 241 LLECIASGVPT-PDIAWYKKGGDLPSDKAK-FENFNKALRITNVSEE---DSGEYFCLAS 295
Query: 178 NKIGHQRVPCVFHIVSAVTF-HPPFNQKLTR 207
NK+G R + +A + P N L
Sbjct: 296 NKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-10
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGN 74
+ D C P V+W N + L + +++ + S
Sbjct: 323 ILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAV 381
Query: 75 YTCVGFNIEGDGESNAFFLNVM 96
Y C N G +NA F++V+
Sbjct: 382 YQCNTSNEHGYLLANA-FVSVL 402
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-14
Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 17/197 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAG 73
+ +F C + P ++W + + + ++ L + N + AG
Sbjct: 16 LSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 73
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDV 130
Y C + +G + L + Q + E + C V ++P P V
Sbjct: 74 IYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE---FKQGEDAEVVCRVSSSPAPAV 130
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
SW ++N T++ + +L + L ++ + + D G C G + +
Sbjct: 131 --SWLYHNEEVTTISDNRFAMLANNNLQILNINKS---DEGIYRCEGRVEARGEIDFRDI 185
Query: 190 HIVSAVTFHPPFNQKLT 206
++ V QK
Sbjct: 186 IVIVNVPPAISMPQKSF 202
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 6e-14
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVNRQSAGN 74
K+ D C + + P V W ++N+ + ++ N +L + +N+ G
Sbjct: 109 EFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 75 YTCVGFNI-EGDGESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
Y C G G+ + + V P P + R E++ SC +P
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE-PAI 226
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW N N + L+V + D G +C +NK G
Sbjct: 227 SWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAG 272
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ F C P + W N K + N + +N L ++ + G Y
Sbjct: 206 AERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 264
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
C N G+ E A FL V
Sbjct: 265 CRATNKAGEDEKQA-FLQVFVQH 286
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-14
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ + E ++ C VYKV + + + L + N ++ + + +G
Sbjct: 94 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------ENHNISITNATVEDSG 147
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCK 102
Y C G + D ES + V+ +P K
Sbjct: 148 TYYCTGKVWQLDYESEPLNITVIKAPREK 176
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-13
Identities = 33/176 (18%), Positives = 51/176 (28%), Gaps = 24/176 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
SLNP I + +V C+ V +W HN TN SL +
Sbjct: 8 SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAK 59
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+ +G Y C + S +L V V V + + + C N
Sbjct: 60 FEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQASAEV--VMEGQPLFLRCHGWRNWD 114
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
K + + A + +S+ + D GT C G
Sbjct: 115 VYKVIYYKDGEALKYWY------ENHNISITNATVE---DSGTYYCTGKVWQLDYE 161
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-14
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNN---------KTLHHNIAQGIIMTNQSLVLQRV 67
E+ V CD P ++ W+ K+L I + SL ++ V
Sbjct: 12 TYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
+G Y C + G + + +L++ Y+P +Q +NISC+V +NP
Sbjct: 71 KLSDSGRYDCEAASRIGGHQKSM-YLDIEYAPKFISNQTIYY-SWEGNPINISCDVKSNP 128
Query: 128 PDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P W + N +G ++ +P S+ D+G C +N IG
Sbjct: 129 P-ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
E + + CD+ + PP + WR + L N+ L + +
Sbjct: 112 SWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP 99
G Y C N + L + P
Sbjct: 171 GRYNCTATN-HIGTRFQEYILALADVP 196
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 5e-14
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 13/179 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRV 67
+ + K C IV P ++W K L + + + +L +
Sbjct: 12 KEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDA 125
++ G YTC+ N G+ E+++ L + +P + A + +
Sbjct: 71 EQEDEGVYTCIATNEVGEVETSS-KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG 129
Query: 126 NP-PDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P P + +W + N+ + L + + + G SN G
Sbjct: 130 RPVPAM--TWFHGQKLLQNSENITIENTEHYTHLVMK--NVQRKTHAGKYKVQLSNVFG 184
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQS-AG 73
S + + P + W H K L ++ I T LV++ V R++ AG
Sbjct: 115 GAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAG 173
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
Y N+ G ++ + +
Sbjct: 174 KYKVQLSNVFGTVDAIL-DVEI 194
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-14
Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 35/206 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ V C P V + +W NK + + L+ V+ + AG Y
Sbjct: 30 VLAGQFVKLCCRATGHPFV-QYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYV 81
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG--------------VARQEKVNISCE 122
C N S L+V P + + + + C
Sbjct: 82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV 141
Query: 123 VDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+P + W N + + + V GT C N
Sbjct: 142 AVGSPI-PHYQWFKNE--LPLTHETKKLYM---VPYV-----DLEHQGTYWCHVYNDRDS 190
Query: 183 QRVPCVFHIVSA--VTFHPPFNQKLT 206
Q V I+ HP ++ T
Sbjct: 191 QDSKKVEIIIDELNNLGHPDNKEQTT 216
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 9e-14
Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 27/185 (14%)
Query: 21 SDVYFDCDI--VAVPPVYKVEWRHNNK--------TLHHN-IAQG----------IIMTN 59
V V++ P +V W +HH+ I
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNI 119
LV+ N GNY C E + L+V+ T H +R + +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKPLTLSVHSERSQ-FPDFSVLTV 124
Query: 120 SCEVDANPPDVKFSWTFNNSAETVNVAQ---AHILRSGTLSVVAYSPNSELDYGTLICWG 176
+C V+A P W E A + G+LSV + + + C G
Sbjct: 125 TCTVNAFPH-PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 177 SNKIG 181
N
Sbjct: 184 KNDKE 188
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 6e-04
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---IIMTNQSL---VLQRVNRQ 70
+ S + C + A P + V+W A + + SL V + +
Sbjct: 116 FPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP 174
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNV 95
TCVG N + E++ +++
Sbjct: 175 WHLPVTCVGKNDK--EEAHGVYVSG 197
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 2e-13
Identities = 27/207 (13%), Positives = 52/207 (25%), Gaps = 17/207 (8%)
Query: 9 GRSLNPDHIKEDSDVYFDCDIVAVPPV--------YKVEWRHNNKTLHHNIAQGIIMTNQ 60
D C + + V W KT + N
Sbjct: 33 FGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR---PLNRRVKNG 89
Query: 61 SLVLQRVNRQSAGN-YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNI 119
L + + Y C GD ++ P+C P + G + +++
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL-GTHDKYGIDL 148
Query: 120 SCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
C + +W NN ++ + + L + D G C+
Sbjct: 149 YCGILYAKHYNNITWYKNNQELIIDGTK-YSQSGQNLIIHNPELE---DSGRYDCYVHYD 204
Query: 180 IGHQRVPCVFHIVSAVTFHPPFNQKLT 206
+ V +T P + +
Sbjct: 205 DVRIKNDIVVSRCKILTVIPSQDHRFK 231
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-13
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 14/178 (7%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRV---- 67
+ + +C P +EW + + + +++ + SL R+
Sbjct: 20 IVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 68 -NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN 126
+R G Y CV N G+ S+ L V + VA E + C+
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRG 138
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
P+ SW + S + +R G L + + + D G +C G+N +G +
Sbjct: 139 HPEPTISWKKDGSPLDDKDER-ITIRGGKLMI---TYTRKSDAGKYVCVGTNMVGERE 192
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-10
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ +C P + W+ + L + I + L++ + AG Y
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER-ITIRGGKLMITYTRKSDAGKYV 181
Query: 77 CVGFNIEGDGESNAFFLNVMYSPT 100
CVG N+ G+ ES L V+ P+
Sbjct: 182 CVGTNMVGERESEVAELTVLERPS 205
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-13
Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 20/183 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSA 72
+ + V F C P + W N K G + SL+++ V
Sbjct: 30 AVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEVDANPP 128
GNYTCV N G L+V+ +P Q L V C+V ++
Sbjct: 89 GNYTCVVENEYGSINHTY-HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 147
Query: 129 DVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSEL--------DYGTLICWGSN 178
W + L+ S + S L D G IC SN
Sbjct: 148 -PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 179 KIG 181
IG
Sbjct: 207 YIG 209
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-06
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-------------IIMTNQSLVLQ 65
DV F C + + ++W + + + L L
Sbjct: 132 VGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
V AG Y C N G +A +L V+
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSA-WLTVLPKQ 223
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-13
Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 19/188 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQS- 71
++ F C PP + WR N K + ++ ++ L ++ V
Sbjct: 18 VRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD 76
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL------GVARQEKVNISCEVDA 125
Y CV N GD S L + + + V ++C+
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 126 NP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
NP P++ W N + ++ + + L+ G L + D G C N +G +
Sbjct: 137 NPTPNI--YWIKNQTKVDMSNPR-YSLKDGFLQIENSREE---DQGKYECVAENSMGTEH 190
Query: 185 VPCVFHIV 192
V
Sbjct: 191 SKATNLYV 198
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-10
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I+ V C + P + W N + + + + + L ++ + G Y
Sbjct: 122 IEVGHTVLMTCKAIGNPT-PNIYWIKNQTKVDMSNPR-YSLKDGFLQIENSREEDQGKYE 179
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
CV N G S A L V H
Sbjct: 180 CVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-12
Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 11/173 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSA 72
++ S+ C + P V+W K + + + I L++ V A
Sbjct: 16 VRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKP----HQQRVLGVARQEKVNISCEVDANPP 128
Y N G A L V + R E V+I P
Sbjct: 75 TVYQVRATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W N I+ S+V + D G + N+ G
Sbjct: 134 -PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS---LVLQR 66
+ H V P + W+ + +N +I+T +
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAF 91
V R+ AG Y N G +
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVE 192
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 1e-12
Identities = 33/177 (18%), Positives = 51/177 (28%), Gaps = 23/177 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGN 74
+ DV C + + W + + + + L L V N
Sbjct: 169 SVDVGDDVLLRCQVEGRGL-EQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKN 227
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFS 133
TC N G E + +NV P ++ I VD P P +
Sbjct: 228 VTCWAENDVGRAEVS-VQVNV-----SFPASVQLHTAVEMHHWCIPFSVDGQPAPSL--R 279
Query: 134 WTFNNSA---------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W FN S E + A +R G L + + + G +N G
Sbjct: 280 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV---NNGNYTLLAANPFG 333
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 99 PTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLS 157
PT K V + V + C+V+ W ++ V ++ L S L+
Sbjct: 159 PTLKVQVPNAS-VDVGDDVLLRCQVEGRGLEQA--GWILTELEQSATVMKSGGLPSLGLT 215
Query: 158 VVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ + S+L+ + CW N +G V
Sbjct: 216 LANVT--SDLNRKNVTCWAENDVGRAEV 241
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-12
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 21/203 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSAG 73
+ + V F C P + W N + G I SLV++ V G
Sbjct: 27 VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEVDANPPD 129
NYTCV N G L+V+ +P Q L V C+V ++
Sbjct: 86 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ- 143
Query: 130 VKFSWTFN---NSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSN 178
W + N ++ ++ + + + L D G +C +N
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 179 KIGHQRVPCVFHIVSAVTFHPPF 201
IG +
Sbjct: 204 FIGVAEKAFWLSVHGPRAAEEEL 226
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-06
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--------------IIMTNQSL 62
SDV F C + + ++W + + + + + L
Sbjct: 126 AVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRV 108
L V+ + G Y C N G E +L+V +
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAF-WLSVHGPRAAEEELVEA 229
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-12
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 19/172 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNRQSAGN 74
++ C P ++ W + + + + G I + + +L ++ G
Sbjct: 120 VERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 75 YTCVGFNIEGDGESNA--FFLNVMYSP---TCKPHQQRVLGVARQEKVNISCEVDANPPD 129
Y CV N G S+ ++ V + P ++ VNI+C +P
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPM- 234
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W E + + L + D C + +G
Sbjct: 235 PYVKWMQGA--EDLTPEDDMPVGRNVLELTDVK-----DSANYTCVAMSSLG 279
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-11
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 20/203 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQS-A 72
F C P +V W K ++ + I L +Q +
Sbjct: 18 GVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDE 76
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH------QQRVLGVARQEKVNISCEVDAN 126
Y CV N G+ +A L V+ ++ V R + C N
Sbjct: 77 NVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGN 135
Query: 127 P-PDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
P P++ +W + + + + LRSG L + + E D G C +N G +
Sbjct: 136 PDPEI--TWFKDFLPVDPSASNGRIKQLRSGALQI---ESSEETDQGKYECVATNSAGVR 190
Query: 184 RVPCVFHIVSAVTFHPPFNQKLT 206
V P F+
Sbjct: 191 YSSPANLYVRVQNVAPRFSILPM 213
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-08
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I +V C V P Y V+W + L M VL+ + + + NYT
Sbjct: 217 IMPGGNVNITCVAVGSPMPY-VKWMQGAEDLT----PEDDMPVGRNVLELTDVKDSANYT 271
Query: 77 CVGFNIEGDGESNAFFLNVMYSP--TCKPHQQ 106
CV + G E+ A + V P K H
Sbjct: 272 CVAMSSLGVIEAVA-QITVKSLPKAGTKHHHH 302
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 2e-12
Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 23/179 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E +++ C V P + V + + +Y
Sbjct: 106 FLTEITEITIPCR-VTDPQL-VVTLHEKKGDVALPV-------PYDHQRGFSGIFEDRSY 156
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ-EKVNISCEVDANPPDVKFSW 134
C + + +S+A+++ + + V V RQ E + + C V N V F W
Sbjct: 157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV-VNFEW 215
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQRV 185
T+ V Y S L D GT C + + +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDM----PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 19/170 (11%), Positives = 40/170 (23%), Gaps = 18/170 (10%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQS-LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V W ++ +A+ T S L L + G Y C + G L +
Sbjct: 27 PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Query: 96 MYSPTCKP-----HQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHI 150
++ + + ++ I C V V + + +
Sbjct: 87 FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVV--TLHEKKGDVALP-----V 139
Query: 151 LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
+ + IC + + V+
Sbjct: 140 PYDHQRGFSGIF-----EDRSYICKTTIGDREVDSDAYYVYRLQVSSINV 184
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-05
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-------SLVLQRVN 68
+++ ++ C ++ V EW + K + L +
Sbjct: 192 VVRQGENITLMCIVIGNEVV-NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250
Query: 69 RQSAGNYTCVGFNIEGDGESNA 90
+ +G YTC D +
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEK 272
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 3e-12
Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 25/188 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ----------GIIMTNQSLVLQR 66
I E++ V C +VEW+ + + + + +
Sbjct: 16 IPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFF-LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
V R+ G YTC+ G+ L V+ P+ KP + ++C
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS-KPTVNIPSSATIGNRAVLTCSEQD 133
Query: 126 NPPDVKFSWTFNNS---------AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
P +++W + N + +G L S + D G C
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS---DTGEYSCEA 190
Query: 177 SNKIGHQR 184
N G
Sbjct: 191 RNGYGTPM 198
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH---------HNIAQGIIMTNQSL 62
P + C P + W + + N + + T L
Sbjct: 114 NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 173
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNA 90
V ++ G Y+C N G ++
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSN 201
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 4e-12
Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 20/149 (13%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQ 65
+S I E V F + KV + N K + + + + ++
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ----------- 114
++ + G YT + + S + ++ K + + R+
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 115 -----EKVNISCEVDANPPDVKFSWTFNN 138
V + C+V + W +
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDE 260
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 7e-09
Identities = 9/76 (11%), Positives = 28/76 (36%)
Query: 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ + +V C + + + W + + + + +L++ +++ AG
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGI 290
Query: 75 YTCVGFNIEGDGESNA 90
Y + + G +S
Sbjct: 291 YEVILKDDRGKDKSRL 306
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 9e-07
Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ F+CD P + W + + + + + ++ + + +
Sbjct: 15 DDGVISLNFECD-KMTPKS-EFSWSKDYVSTEDS--PRLEVESKGNKTKMTFKDLGMDDL 70
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRV----------LGVARQEKVNISCE 122
G Y+C + +G S + H+ + + + + +V +
Sbjct: 71 GIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130
Query: 123 VDANPPDVKFSWTFNN 138
+ + K ++ FN
Sbjct: 131 AEKLSGNAKVNYIFNE 146
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-12
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 26/189 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG----------IIMTNQSLVLQR 66
+ E+ + C +VEW+ + + + ++ +
Sbjct: 13 VPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAF-FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
V R+ G YTC+ G L V+ P+ KP V + ++C
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPS-KPTISVPSSVTIGNRAVLTCSEHD 130
Query: 126 NPPDVKFSWTFNNS----------AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICW 175
P ++SW + +N + +SG L + D G C
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF---DSGEYYCQ 187
Query: 176 GSNKIGHQR 184
N G
Sbjct: 188 AQNGYGTAM 196
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 8e-06
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----------HHNIAQGIIMTNQSL 62
P + + C P + W + ++ N + I + L
Sbjct: 112 VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDL 171
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNA 90
+ V +G Y C N G +
Sbjct: 172 IFDPVTAFDSGEYYCQAQNGYGTAMRSE 199
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 1e-11
Identities = 37/185 (20%), Positives = 54/185 (29%), Gaps = 24/185 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAG 73
+ + V F C P + W N + G I SLV++ V G
Sbjct: 135 VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 193
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEVDANPPD 129
NYTCV N G L+V+ +P Q L V C+V ++
Sbjct: 194 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ- 251
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLI-------------CWG 176
W + V L A + ++ + L C
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLK-TAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 177 SNKIG 181
N IG
Sbjct: 311 GNSIG 315
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-10
Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 34/212 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
V C P+ W + L + + +++ Q L + + + +G Y+
Sbjct: 20 FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS--ERVLVGPQRLQVLNASHEDSGAYS 77
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPH-----------------------QQRVLGVAR 113
C + + + S +++L V
Sbjct: 78 CRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA 137
Query: 114 QEKVNISCEVDANP-PDVKFSWTFNN---SAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
V C NP P + SW N E + +L + + P+ D
Sbjct: 138 ANTVRFRCPAAGNPTPSI--SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS---DR 192
Query: 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201
G C NK G R ++ P
Sbjct: 193 GNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 224
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---------------IIMTNQS 61
SDV F C + + ++W + + + +
Sbjct: 234 AVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
L L V + AG YTC+ N G +A +L V+ +
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSA-WLVVLPAE 329
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-11
Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 23/181 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQS-A 72
F C P K+ W K + + + I + L +Q +
Sbjct: 18 GVSGGVASFICQATGDPRP-KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKP------HQQRVLGVARQEKVNISCEVDAN 126
Y CV N G+ + L V+ ++ V R + C N
Sbjct: 77 AIYECVASNNVGEISVST-RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 127 P-PDVKFSWTFNN-----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
P P++ +W + S + Q G L + + D G C +N
Sbjct: 136 PDPEI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES---DQGKYECVATNSA 190
Query: 181 G 181
G
Sbjct: 191 G 191
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 7e-09
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-----HHNIAQGIIMTNQSLVLQRVNRQS 71
++ C P ++ W + + + I Q + +L +++
Sbjct: 120 VERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
G Y CV N G S L V
Sbjct: 179 QGKYECVATNSAGTRYSAPANLYV 202
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 2e-11
Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 12/186 (6%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
++ V C + R+ K + + + + + AG C
Sbjct: 22 NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81
Query: 78 VGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSW 134
+ +S + + V+ + ++ EK+ ++C + F+W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQRVP 186
+ +S L++ + S L D G C S+ + ++
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Query: 187 CVFHIV 192
+
Sbjct: 201 TFVRVH 206
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-11
Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 19/178 (10%)
Query: 17 IKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAG 73
+KE + CD P W N + + + + TN +L + V G
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKG 79
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ--------EKVNISCEVDA 125
NY+C + + F+ ++ P V + + V + C
Sbjct: 80 NYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 126 NP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
NP PD+ W L + D G C N G
Sbjct: 140 NPVPDI--RWRKVLEPMPSTA--EISTSGAVLKIFNIQLE---DEGIYECEAENIRGK 190
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+V +C + P + WR + + I + L + + + G Y
Sbjct: 125 ALMGQNVTLECFALGNPVP-DIRWRKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYE 181
Query: 77 CVGFNIEGDGESNAFFLNV 95
C NI G + A + V
Sbjct: 182 CEAENIRGKDKHQA-RIYV 199
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 3e-11
Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 30/187 (16%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
L + E ++V C+ V + L+L+
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKV-TLNGVPAQPLGP----------RAQLLLKATPED 337
Query: 71 SAGNYTCVGFNI---EGDGESNAFFLNVMYSPTCKPHQQ-RVLGVARQEKVNISCEVDAN 126
+ +++C + ++ L V+Y P + C+ N
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 397
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186
P + + + L G V GT +C + G
Sbjct: 398 PL-PELKCLKDGTFP---------LPIGESVTVTRD-----LEGTYLCRARSTQGEVTRE 442
Query: 187 CVFHIVS 193
+++S
Sbjct: 443 VTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 3e-09
Identities = 26/205 (12%), Positives = 49/205 (23%), Gaps = 16/205 (7%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ P ++ C + P V K L A G + +
Sbjct: 92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP-AEVTTTVLVRR 150
Query: 69 RQSAGNYTCVGFNIEGDGESNAF-------FLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
N++C F L P P + + + C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 122 EVDANPP--DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
+D P + + + V + + S A + D GT +
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVI 266
Query: 180 IGHQRVPCVFHIVSAVTFHPPFNQK 204
+G+Q + + P
Sbjct: 267 LGNQSQETLQTVTIYSFPAPNVILT 291
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 2e-08
Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 23/199 (11%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
+P ++ D+ C + + PV +V ++ L+ + G + + V +
Sbjct: 196 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND-SFSAKASVSVTAE 254
Query: 71 SAGNYTCVGFNIEGDGESNAFF---LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
G I G+ + +P + V +V + CE
Sbjct: 255 DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS---EGTEVTVKCEAHPRA 311
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187
V + + L + E + + C + ++ Q +
Sbjct: 312 K-VTLNGVPAQP----------LGPRAQLLL---KATPEDNGRSFSCSATLEVAGQLIHK 357
Query: 188 VFHIVSAVTFHPPFNQKLT 206
V + P +++
Sbjct: 358 NQTRELRVLYGPRLDERDC 376
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-05
Identities = 22/167 (13%), Positives = 41/167 (24%), Gaps = 12/167 (7%)
Query: 33 PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92
P + +E K L N V + N Q C N + F
Sbjct: 28 PMLLGIETPLPKKELLLP-------GNNRKVYELSNVQEDSQPMCY-SNCPDGQSTAKTF 79
Query: 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT-FNNSAETVNVAQAHIL 151
L V ++P + + + C+V+ P + E
Sbjct: 80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP 139
Query: 152 RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFH 198
T +V+ + C + Q + + +
Sbjct: 140 AEVTTTVLVRRDH---HGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-11
Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 14/184 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ + +V C + + + W + + + + +L++ +++ AG
Sbjct: 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 74
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ--------EKVNISCEVDA 125
Y + + G +S L + + ++ E + + V
Sbjct: 75 IYEVILKDDRGKDKSRL-KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 126 NPPDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
D+K +W+ N SA + V L + +PN D G + +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN---DKGKYVMELFDGKTGH 190
Query: 184 RVPC 187
+
Sbjct: 191 QKTV 194
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-09
Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 32/189 (16%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH--NIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + KV W HN + + + G+ L + G Y
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK-------------------- 116
F+ + + L+ QR+ A EK
Sbjct: 181 MELFDGKTGHQKTVD-LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA 239
Query: 117 VNISCEVDANPPDVKFSWTFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172
+N++C V +PP + SW N S + N+ + R+ ++ S D G
Sbjct: 240 LNLTCNVWGDPP-PEVSWLKNEKALASDDHCNL-KFEAGRTAYFTINGVSTA---DSGKY 294
Query: 173 ICWGSNKIG 181
NK G
Sbjct: 295 GLVVKNKYG 303
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-07
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
I+E + C++ PP +V W N K L H N+ + V+ +
Sbjct: 234 IQEGKALNLTCNVWGDPPP-EVSWLKNEKALASDDHCNLKFEA-GRTAYFTINGVSTADS 291
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y V N G S+ ++V
Sbjct: 292 GKYGLVVKNKYGSETSDF-TVSV 313
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 6e-11
Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 17/182 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQS---- 71
+ +C P ++ W ++ T ++ I ++ LV +
Sbjct: 16 FSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 74
Query: 72 --AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
A Y C+ N G S + + + + + V R I C + + D
Sbjct: 75 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVAD 133
Query: 130 VK--FSWTFNNSAETVNVAQA----HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
SW + A+ +L SG L + E Y + C +++ +
Sbjct: 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI--REVGPEDGYKSYQCRTKHRLTGE 191
Query: 184 RV 185
Sbjct: 192 TR 193
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 5e-10
Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 23/175 (13%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVN 68
P + + C P W + + + + +L+++
Sbjct: 220 KPLELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDAN 126
+ +G Y CV N G L V P Q V +C+ N
Sbjct: 279 VEDSGKYLCVVNNSVGGESVET-VLTVTAPLSAKIDPPTQT---VDFGRPAVFTCQYTGN 334
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P SW + +A L + + D G C+ N
Sbjct: 335 PIK-TVSWMKD--------GKAIGHSESVLRIESVKKE---DKGMYQCFVRNDRE 377
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 24/218 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNKTLHHNIAQG----IIMTNQSLV 63
+N +H+ + C I + V V W + + + A+ +++ + L
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167
Query: 64 LQRVNRQ-SAGNYTCVGFNIEGDGE--SNAFFLNV------MYSPTCKPHQQRVLGVARQ 114
++ V + +Y C + S V +P Q+ L +
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 115 EKVNISCEVDANPPDVKFSWTFNNS----AETVNVAQAHILRSGTLSVVAYSPNSELDYG 170
+++ C P F W + V + SGTL + D G
Sbjct: 228 HTISLLCPAQGFPA-PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE---DSG 283
Query: 171 TLICWGSNKIGHQRVPCVFHIVSAVTFH-PPFNQKLTR 207
+C +N +G + V V + + ++ P Q +
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 321
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 8e-08
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ F C P V W + K + H+ L ++ V ++ G Y
Sbjct: 318 TVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS--------ESVLRIESVKKEDKGMY 368
Query: 76 TCVGFNIEGDGESNAFFLNV 95
C N E++A L +
Sbjct: 369 QCFVRNDRESAEASA-ELKL 387
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 1e-10
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 5/137 (3%)
Query: 48 HHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR 107
H + + + S+ + + G Y C G L V+ P+
Sbjct: 72 VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF-LLTVLVKPS-GTRCFV 129
Query: 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL 167
+ CE ++F W + ++T+ + S +SV S
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE--- 186
Query: 168 DYGTLICWGSNKIGHQR 184
GT C N++G +
Sbjct: 187 YSGTYSCTVQNRVGSDQ 203
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-07
Identities = 12/81 (14%), Positives = 28/81 (34%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
R + +D C+ + EW+ + + MT+ + ++ +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASS 185
Query: 70 QSAGNYTCVGFNIEGDGESNA 90
+ +G Y+C N G +
Sbjct: 186 EYSGTYSCTVQNRVGSDQCML 206
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 18/175 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ E S F+ I P +V W + + + + G+ ++ L + V + ++
Sbjct: 17 VLEGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP-----TCKPHQQRVLGVARQEKVNISCEVDANP 127
G Y+ N G S A L V + V + +V + V P
Sbjct: 76 GRYSLKATNGSGQATSTA-ELLVKAETAPPNFVQRLQSMT---VRQGSQVRLQVRVTGIP 131
Query: 128 -PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P VK + + + + I + G L + + D GT +N +G
Sbjct: 132 TPVVK--FYRDGAEIQSS-LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
+++ S V + +P V++ + + I+Q SL++ + +
Sbjct: 115 VRQGSQVRLQVRVTGIPT-PVVKFYRDGAEIQSSLDFQISQE--GDLYSLLIAEAYPEDS 171
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y+ N G S A L V
Sbjct: 172 GTYSVNATNSVGRATSTA-ELLV 193
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 2e-10
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
+ +KE V C + + W N+++L + N L + + R+
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIGANIQ--WLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
AG Y C N SN+ L++++ P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-09
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 30/210 (14%)
Query: 14 PDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQG------------------ 54
P + ED++V +P + W N T
Sbjct: 8 PPQVAEDNNVLLLV--HNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65
Query: 55 IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ 114
II +N SL+ Q + + G YT + +V T Q V
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKEL 125
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
+ V ++C +N W FN+ + + + L + P D G C
Sbjct: 126 DSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRI---DPIKREDAGEYQC 180
Query: 175 WGSNKIGHQRVPCVFHIVSAVTFHPPFNQK 204
SN + +R + + P +
Sbjct: 181 EISNPVSVRRSNSIKLDI----IFDPHHHH 206
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-10
Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 19/183 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSL----VLQRVNR 69
+K++ +C + P +EW + + + + + + +L +Q
Sbjct: 20 VVKKNEPATLNCKVEGKPEP-TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC-EVDANPP 128
Q G Y CV N G S L + + + VA+ E + C P
Sbjct: 79 QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE 138
Query: 129 DVKFSWTFNN-------SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + + ++ I+ G L + S +D G C N +G
Sbjct: 139 -PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI---SNVEPIDEGNYKCIAQNLVG 194
Query: 182 HQR 184
+
Sbjct: 195 TRE 197
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-09
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-------IMTNQSLVLQRVNR 69
+ + +C P + W + L A I+ +L++ V
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
GNY C+ N+ G ES+ L V H
Sbjct: 180 IDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-10
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGN 74
+E V + C I +V W + L ++ I + L ++ + + G
Sbjct: 13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGT 72
Query: 75 YTCVGFNIEGDGESNAFFLNV 95
Y C N G+ S A L V
Sbjct: 73 YRCKVVNDYGEDSSYA-ELFV 92
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 8e-10
Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 24/211 (11%)
Query: 9 GRSLNPDHIKEDSDVYFDCDIVAVP------PVYKVEWRHNNKTLHHNIAQG--IIMTNQ 60
GR + E V C V P + W N+ + + +
Sbjct: 22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG 81
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK---- 116
+L L ++ +G Y C N + + L V + +
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYCDKMSI-ELRVFENTDAFLPFISYPQILTLSTSGVL 140
Query: 117 --VNISCEVDANPPDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLI 173
++S K W ++ + N + + L V + D G
Sbjct: 141 VCPDLSEFTRDKTDV-KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE---DAGYYR 196
Query: 174 CWGSNKIG----HQRVPCVFHIVSAVTFHPP 200
C + + I P
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIP 227
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-07
Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 37/204 (18%)
Query: 14 PDHIKEDSDVYFDCDIVAVP----PVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVN 68
P + + C ++ K++W ++ L + + + + L++ V
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVA 188
Query: 69 RQSAGNYTCVGFNIEGDGESNA---FFLNVMYSPTCKP--------HQQRVLGVARQEKV 117
+ AG Y CV + N L + LG ++
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG----SRL 244
Query: 118 NISCEVDAN----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN--------- 164
I C+V + + WT N++ + + N
Sbjct: 245 TIPCKVFLGTGTPLTTMLW-WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 165 --SELDYGTL-ICWGSNKIGHQRV 185
+ D C N + Q +
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTL 327
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-09
Identities = 23/189 (12%), Positives = 46/189 (24%), Gaps = 27/189 (14%)
Query: 21 SDVYFDCDIVAVP-----PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
D C + + K++W + K L + L++ V + GNY
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEKHRGNY 177
Query: 76 TCVGFNIEGDGESNA---FFLNVMYSPTCKP-----HQQRVLGVARQEKVNISCEVDANP 127
TC + + + V ++ + C V
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL------------DYGTLICW 175
D+ W +N S + + ++ + C+
Sbjct: 238 SDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 296
Query: 176 GSNKIGHQR 184
N G
Sbjct: 297 AKNTHGIDA 305
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-08
Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 21/197 (10%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAGNYT 76
+ C + + W ++ + Q I + L + +G+Y
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG---VARQEKVNISC------EVDANP 127
CV N + + + + + + + C + + N
Sbjct: 79 CVVRNSSYCLRIK-ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNE 137
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG----HQ 183
K W + ++ L V+ + G C S
Sbjct: 138 LP-KLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEK---HRGNYTCHASYTYLGKQYPI 192
Query: 184 RVPCVFHIVSAVTFHPP 200
F + P
Sbjct: 193 TRVIEFITLEENKPTRP 209
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 2e-09
Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 17/194 (8%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80
V C V V W + ++ + L+L+ V +GNY+C
Sbjct: 22 DSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMGRRLLLRSVQLHDSGNYSC--- 77
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV----DANPP---DVKFS 133
+ L V P + ++ + N+ CE + +
Sbjct: 78 -YRAGRPAGTVHLLVDV----PPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVR 132
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR-VPCVFHIV 192
N+ AE + S S P + + + ++ +G + F
Sbjct: 133 KFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGC 192
Query: 193 SAVTFHPPFNQKLT 206
+ PP N +T
Sbjct: 193 GILQPDPPANITVT 206
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-09
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ S + C V P + +W N L H T + ++ V+ + G Y
Sbjct: 15 LMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYW 66
Query: 77 CVGFNIEGDGESNAFFLNVMYSPT 100
C +N +S + +
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDELNN 90
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 4e-09
Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 28/176 (15%)
Query: 19 EDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGI---------IMTNQSLVLQRVN 68
+ + + + +V W + + + I+ N L ++ +
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
R +G Y ++ G N + KP ++CEV
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMI-----YWECSNATLTCEVLEGTD 124
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
V+ LRS ++Y + C N++ +
Sbjct: 125 -VELKLYQGK----------EHLRSLRQKTMSYQWTN--LRAPFKCKAVNRVSQES 167
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-09
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+L + C P P ++ W +N+TL + + N++L ++RV
Sbjct: 15 GNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR 72
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
++ G YTC ++ G + A F + +
Sbjct: 73 KEDEGLYTCQACSVLGCAKVEA-FFIIEGAQE 103
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 5e-09
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 32/177 (18%)
Query: 21 SDVYFDCDIVAVP-PVYKVEWRH-----------NNKTLHHNIAQGIIMTNQSLVLQRVN 68
D+ D + + ++W K + N +L ++ +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 69 RQSAGNYTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
Y ++ +G F L + KP ++CEV N
Sbjct: 75 TDDQDIYKVSIYDTKGKNVLEKIFDLKI-QERVSKPKIS-----WTCINTTLTCEVM-NG 127
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
D + + + + + ++Q I T S C NK+ +
Sbjct: 128 TDPELNLYQDG--KHLKLSQRVITHKWTTS----------LSAKFKCTAGNKVSKES 172
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 6e-09
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ D C P + WR + + ++ + N L ++ G YT
Sbjct: 20 VAVDGTFVLSCVATGSPV-PTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYT 78
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
C+ G+ +A ++ V
Sbjct: 79 CIASTPSGEATWSA-YIEVQEFG 100
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-09
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E D C + P P ++ W N + + + + L +Q + G Y
Sbjct: 23 VIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARST-CEAGVAELHIQDALPEDHGTY 79
Query: 76 TCVGFNIEGDGESNAFFLNV 95
TC+ N G +A ++ V
Sbjct: 80 TCLAENALGQVSCSA-WVTV 98
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 8e-09
Identities = 22/187 (11%), Positives = 48/187 (25%), Gaps = 32/187 (17%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-----------------IMTNQS 61
V + A V + W N +L + + S
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNIS- 120
L L + + G+Y + + + +++ L ++ + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQ-ISTKTSAKLSSYTLRILRQLR-NIQVTNHSQLFQNMTCELHL 129
Query: 121 -CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
C V+ +V F W + + L+V S C N
Sbjct: 130 TCSVEDADDNVSFRWEALGNT---------LSSQPNLTVSWDPRIS--SEQDYTCIAENA 178
Query: 180 IGHQRVP 186
+ +
Sbjct: 179 VSNLSFS 185
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 9e-09
Identities = 27/174 (15%), Positives = 48/174 (27%), Gaps = 25/174 (14%)
Query: 34 PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA--- 90
+ W + + +I +L + GNYTCV E +
Sbjct: 153 VKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210
Query: 91 FFLNVMYSPTCK-------PHQQRVLGVARQEKVNISCEVDANP---PDVKFSWTFNNSA 140
+ V+ SP P+ V E++ I C V + + WT +
Sbjct: 211 LTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKK 270
Query: 141 ETVNVAQAHILRSGTLSVVAYSPNSEL---------DYGTL-ICWGSNKIGHQR 184
I S + S +++ D +C + G
Sbjct: 271 PDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVA 324
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-08
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 26/140 (18%)
Query: 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVG 79
+ + KV W HN + ++ + G+ L + G Y
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Query: 80 FNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK--------------------VNI 119
F+ + + L+ QR+ A EK +N+
Sbjct: 79 FDGKTGHQKTV-DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL 137
Query: 120 SCEVDANP-PDVKFSWTFNN 138
+C V +P P+V W N
Sbjct: 138 TCNVWGDPPPEVS--WLKNE 155
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-08
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-----SLVLQRVNRQS 71
I+E + C++ PP +V W N K L + + + V+
Sbjct: 129 IQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQT--DHCNLKFEAGRTAYFTINGVSTAD 185
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
+G Y V N G S+ ++V
Sbjct: 186 SGKYGLVVKNKYGSETSDF-TVSV 208
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-08
Identities = 25/184 (13%), Positives = 47/184 (25%), Gaps = 12/184 (6%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYK--VEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ P ++ C + P V K L A G + +
Sbjct: 92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP-AEVTTTVLVRR 150
Query: 69 RQSAGNYTCVGFNIEGDGESNAF-------FLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
N++C F L P P + + + C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+D P + + +N + + + S A + D GT + +G
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTY--GNDSFSAKASVSVTAEDEGTQRLTCAVILG 268
Query: 182 HQRV 185
+Q
Sbjct: 269 NQSQ 272
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-08
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQ 65
L I E V F C + P K+ W + K + I + SL
Sbjct: 13 MKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
GNYT + N +G L V
Sbjct: 72 ASTLDDDGNYTIMAANPQGRISCTG-RLMV 100
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-08
Identities = 27/181 (14%), Positives = 49/181 (27%), Gaps = 36/181 (19%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRH--NNKTLHHNIAQGIIMT-------------NQSLV 63
S+V + ++ W H N K L + + N +L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV 123
+ V+++ G+Y + + + V Y KP ++CEV
Sbjct: 73 IYNVSKEDRGDYYMRMLH--ETEDQWKITMEV-YEMVSKPMIYW-----ECSNATLTCEV 124
Query: 124 DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
DV+ LRS + S C N++ +
Sbjct: 125 L-EGTDVELKLYQGKE----------HLRSLRQKTM--SYQWTNLRAPFKCKAVNRVSQE 171
Query: 184 R 184
Sbjct: 172 S 172
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-08
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQ 65
+ + + F ++ + P +V+W HN L + I TN +L +
Sbjct: 13 LRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQES--SKIHYTNTSGVLTLEIL 69
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +G Y V N +G+ A L+V
Sbjct: 70 DCHTDDSGTYRAVCTNYKGEASDYA-TLDV 98
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-08
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQS 71
+ E V +C I A+P P K+ W+ NN+ + N + + + +L+++ VN++
Sbjct: 27 VLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSP 99
AG YT N G N L+V P
Sbjct: 85 AGWYTVSAVNEAGVTTCNT-RLDVTARP 111
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-08
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRVN 68
L ++E DV + P V W N + + + + L +
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAE 70
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNV 95
R AG YTC N G + A L V
Sbjct: 71 RGDAGFYTCKAVNEYGARQCEA-RLEV 96
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-08
Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 11/172 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ V C WR + + T +L + V+ + +Y
Sbjct: 13 AQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGKVT-NEGTTSTLTMNPVSFGNEHSYL 70
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSW 134
C E + + S P + + + + C V P ++
Sbjct: 71 CTATC-ESRKLEKGIQVEIY-SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 135 TFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ S E + A L + +L V ++P E L+C I
Sbjct: 129 LKGDHLMKSQEFLEDADRKSLETKSLEVT-FTPVIEDIGKVLVCRAKLHIDE 179
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-08
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ D C P + W T + I +L ++ + G YT
Sbjct: 20 LAVDGTALLKCKATGDPLP-VISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYT 78
Query: 77 CVGFNIEGDGESNAFFLNV 95
CV + G+ +A L+V
Sbjct: 79 CVATSSSGETSWSA-VLDV 96
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-08
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + C + + W + L + +T + + +Q +G Y
Sbjct: 15 VHPGDLLQLRCRLRDDVQ--SINWLRDGVQLAES--NRTRITGEEVEVQDSVPADSGLYA 70
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKP 103
CV + G ++ F +NV + P
Sbjct: 71 CVTSSPSGS-DTTYFSVNVSDALPSGP 96
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-08
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAG 73
+ E F CD P P V W + L + + T + + V G
Sbjct: 26 VYEGESARFSCDTDGEPVP--TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 83
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
NY+ V N EG E+ L +
Sbjct: 84 NYSVVVENSEGKQEAEF-TLTI 104
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 6e-08
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
++ +DV F C + P Y + W + + + N L ++ V AG Y
Sbjct: 21 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGK---LPSRAMDFNGILTIRNVQPSDAGTY 77
Query: 76 TCVGFNIEGDGESNAFFLNV 95
C G N+ + A L+V
Sbjct: 78 VCTGSNMFAMDQGTA-TLHV 96
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ V C++ A P ++ W + L + + L+L + Q G Y+
Sbjct: 22 VAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLP-------LPPSPVLILPEIGPQDQGTYS 73
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
CV + + + + P
Sbjct: 74 CVATHSSHGPQESRAVSISIIEP 96
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-07
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQR 66
+++ + E S FDC + P +V W ++ + + I + SL +
Sbjct: 46 KTILDMEVVEGSAARFDCKVEGYPD-PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISE 104
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
V YTC N G+ A L V + +E+
Sbjct: 105 VCGDDDAKYTCKAVNSLGEATCTA-ELLVETMGKEGEGEGEGEEDEEEEE 153
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-07
Identities = 19/188 (10%), Positives = 47/188 (25%), Gaps = 29/188 (15%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
H+ + + + V+ R I ++L + ++ Q +G +
Sbjct: 107 HLLQGQSLTLTLESPPGSSP-SVQCRSPRGK--------NIQGGKTLSVSQLELQDSGTW 157
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
TC + E + V+ + G + ++ V+ + W
Sbjct: 158 TCTVLQNQKKVEFKI-DIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ 216
Query: 136 FNNSA------------------ETVNVAQAHILRSGTLSVVAYSPNSEL-DYGTLICWG 176
++ + + + L + + G L
Sbjct: 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL 276
Query: 177 SNKIGHQR 184
K G
Sbjct: 277 EAKTGKLH 284
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-06
Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 42/183 (22%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT------------------- 58
K+ V C + + W+++N+ +
Sbjct: 7 KKGDTVELTCT-ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN 118
N L+++ + + + Y C + + + + F L + G + +
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA------NSDTHLLQG----QSLT 115
Query: 119 ISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ E +I TLSV D GT C
Sbjct: 116 LTLESPPGSS-PSVQCRSPRG--------KNIQGGKTLSVSQLELQ---DSGTWTCTVLQ 163
Query: 179 KIG 181
Sbjct: 164 NQK 166
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 21/192 (10%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQ 70
P ++ D+ C + + PV +V ++ L+ + + ++ V +
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71
Query: 71 SAGNYTCVGFNIEGDGESNAFF-LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
TC E+ + +P + V +V + CE
Sbjct: 72 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS---EGTEVTVKCEAHPRA-- 126
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
T N +A +L T E + + C + ++ Q +
Sbjct: 127 ---KVTLNGVPAQPLGPRAQLLLKAT---------PEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 190 HIVSAVTFHPPF 201
V + P
Sbjct: 175 TRELRVLYGPRL 186
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-06
Identities = 22/180 (12%), Positives = 44/180 (24%), Gaps = 30/180 (16%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
L + E ++V C+ V + L+L+
Sbjct: 104 ILTKPEVSEGTEVTVKCEAHPRAKVTL-NGVPA----------QPLGPRAQLLLKATPED 152
Query: 71 SAGNYTCVGFNI---EGDGESNAFFLNVMYSPTCKPHQQ-RVLGVARQEKVNISCEVDAN 126
+ +++C + ++ L V+Y P + C+ N
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 212
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186
P + + + L G V GT +C + G
Sbjct: 213 PL-PELKCLKDGT---------FPLPIGESVTVTRD-----LEGTYLCRARSTQGEVTRE 257
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-05
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
E+S C P +++ + V R G Y
Sbjct: 197 WPENSQQTPMCQAWGNPLP-ELKCLKDGTFP-----------LPIGESVTVTRDLEGTYL 244
Query: 77 CVGFNIEGDGESNAFFLNVMY 97
C + +G+ +NV+
Sbjct: 245 CRARSTQGEVTREV-TVNVLS 264
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-07
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSA 72
+ + V F C P + W N K G + SL+++ V
Sbjct: 19 AVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77
Query: 73 GNYTCVGFNIEGDGESNAFFLNVM 96
GNYTCV N G L+V+
Sbjct: 78 GNYTCVVENEYGSINHTY-HLDVV 100
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-07
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQ 65
+ I E D + +P P V W N +T+ + +I++ + SL+ +
Sbjct: 10 QVPENMSIDEGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V AG Y CV N G+ L+V
Sbjct: 68 VVRASDAGAYACVAKNRAGEATFTV-QLDV 96
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-07
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRV 67
+ + + SD +F +V P P + EW N + + LV++ V
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV 69
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ + + NI G+ S+A FL V
Sbjct: 70 TGEDSASIMVKAINIAGETSSHA-FLLV 96
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-07
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 32/210 (15%)
Query: 21 SDVYFDCDIVAVPPV----YKVEWRHNNKTLHHNIAQGIIMTNQ---------------- 60
S++ +C + V W +K + + + Q
Sbjct: 17 SNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLS 76
Query: 61 ----SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
+L + V Q AG Y C+ + G + + V + V+ E
Sbjct: 77 LGNAALQITDVKLQDAGVYRCM-IS-YGGADYKRITVKVNAPYNKINQRILVVDPVTSE- 133
Query: 117 VNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRS--GTLSVVAYSPNSELDYGTLI 173
++C+ + P +V WT ++ + +V + +
Sbjct: 134 HELTCQAEGYPKAEV--IWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFY 191
Query: 174 CWGSNKIGHQRVPCVFHIVSAVTFHPPFNQ 203
C + I HPP +
Sbjct: 192 CTFRRLDPEENHTAELVIPELPLAHPPNER 221
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-07
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSA 72
++E DC + +P P + W+ + K + + A +++ SL+++ V + A
Sbjct: 21 VQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G YTC+ N G + L V +
Sbjct: 79 GIYTCIATNRAGQNSFSL-ELVVAAKES 105
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-07
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG----IIMTNQSLVLQRV----- 67
+ + +C P +EW + + + +++ + SL R+
Sbjct: 21 VSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
+R G Y CV N G+ S+ L V + H
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHHH 117
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-07
Identities = 16/176 (9%), Positives = 49/176 (27%), Gaps = 31/176 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPV---YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ P+ W +++ +N +L + ++AG
Sbjct: 14 FLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------TATLTVADATSENAG 65
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ-RVLGVARQEKVNISCEVD-------A 125
+Y + + + + + + + V+ Q V + V A
Sbjct: 66 SYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA 125
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+ ++ +SW+ I + +++ ++ + G +
Sbjct: 126 DNYELHYSWSKGEDV---------IDTTQDITIQEFTAD---KNGVYTVKVWGESE 169
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-06
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 38/184 (20%)
Query: 17 IKEDSDVYFDCDIVA-------VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ +DV + W +I T Q + +Q
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED---------VIDTTQDITIQEFTA 154
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN--- 126
G YT + D ++A ++ + VA +++++ V +
Sbjct: 155 DKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVG 214
Query: 127 ------PPDVKFSW----------TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG 170
+K++W T S + I G L + + + D
Sbjct: 215 DSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD---DTA 271
Query: 171 TLIC 174
C
Sbjct: 272 KFWC 275
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 4e-07
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 6/130 (4%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVNRQSAG 73
+ + F C + V + + + S+V+ + ++ AG
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303
Query: 74 NYTCVGFNIEGDGESNAFFLNVM--YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
Y C + E + + + P V+ V + C +
Sbjct: 304 RYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSI 363
Query: 132 FSWTFNNSAE 141
W A+
Sbjct: 364 KYWCLWEGAQ 373
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 5e-07
Identities = 21/183 (11%), Positives = 44/183 (24%), Gaps = 42/183 (22%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT------------------- 58
K+ V C + W+++N+ +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN 118
N L+++ + + + Y C + E + + + + + +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVED--QKEEVQLLVFGLTANSDTH--------LLQGQSLT 116
Query: 119 ISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ E +I TLSV S D GT C
Sbjct: 117 LTLESPPGSS-PSVQCRSPR--------GKNIQGGKTLSV---SQLELQDSGTWTCTVLQ 164
Query: 179 KIG 181
Sbjct: 165 NQK 167
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-05
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
H+ + + + V+ R I ++L + ++ Q +G +
Sbjct: 108 HLLQGQSLTLTLESPPGSSP-SVQCRSPR--------GKNIQGGKTLSVSQLELQDSGTW 158
Query: 76 TCVGFNIEGDGESNA 90
TC + E
Sbjct: 159 TCTVLQNQKKVEFKI 173
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-07
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---IIMTNQSLVLQRVNRQSA 72
+I E C PP+ V+W N T+ + ++ ++ + +L V
Sbjct: 363 NISEGRMAELKCR---TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT 419
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
G YTC+ N+ G+ ++A +LNV + T H
Sbjct: 420 GVYTCMVTNVAGNSNASA-YLNVSTAGTHHHHHH 452
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-07
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 25 FDCDIVAVPPVYKVEWRHNNKTL------HHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
+ + PP + W HN + L H Q ++ L+ + + GNYT +
Sbjct: 25 IEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI 83
Query: 79 GFNIEGDGESNAFFLNVMYSP 99
N G + + P
Sbjct: 84 AKNPLGTANQTI-NGHFLKEP 103
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-07
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + C + + W + L + +T + + ++ +G Y
Sbjct: 21 VHPGDLLQLRCRLRDDVQ--SINWLRDGVQLVES--NRTRITGEEVEVRDSIPADSGLYA 76
Query: 77 CVGFNIEGDGESNAFFLNV 95
CV + G ++ F +NV
Sbjct: 77 CVTSSPSGS-DTTYFSVNV 94
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQS 71
+ E + V C++ A P + W + + L + NI + L + +
Sbjct: 29 YTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSP 99
GNY C N G L +P
Sbjct: 88 FGNYNCTAVNRIGQESLEF-ILVQADTP 114
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
Y + + MY+P + +VNI+CEV A P
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVY--TWEGNQVNITCEVFAYPS-ATI 50
Query: 133 SWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW + + N + I + + S + +P+SE D+G C N+IG
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIG 100
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-06
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 15 DHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHN-------IAQGIIMTNQSLVLQR 66
+ D + P P ++W +N L+ + + L L
Sbjct: 11 ESPTSDHHWCIPFTVKGNPKP--ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
+ G+YT + N G E + M P
Sbjct: 69 PTHMNNGDYTLIAKNEYGKDEKQI-SAHFMGWP 100
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-06
Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 10/103 (9%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--------S 61
S H C I + PP ++ W L + + +
Sbjct: 18 SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77
Query: 62 LVLQRVNRQ-SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKP 103
L + + R Y C +N G L S P
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEI-IRLKEQGSEMSGP 119
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 2e-04
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV 143
G S+ L V P Q + EK I C + + PP + +W++ +
Sbjct: 1 GSSGSSGT-LTVNGPPIISSTQTQH--ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
Query: 144 N-----VAQAHILRSGTLSVVAYSPNSELDYGTL-ICWGSNKIG 181
+ G +S + S D+ T+ C N G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
++ V + P+ W K + H + L + ++
Sbjct: 19 VRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSE--NGSKLTILAARQEHC 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP 99
G YT + N G ++ L V+ P
Sbjct: 76 GCYTLLVENKLGSRQAQV-NLTVVDKP 101
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-06
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRV 67
+ IK + D + P W + + + S+
Sbjct: 7 TASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPELLVDAKSSTTSIFFPSA 65
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNV 95
R +GNY N G+ E+ + V
Sbjct: 66 KRADSGNYKLKVKNELGEDEAIF-EVIV 92
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-06
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQR 66
L ++E S F C I V W + LH N I L L++
Sbjct: 18 EDLEDVDVQEGSSATFRCRISP-ANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQ 76
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
+ + +G GD ++A L V P+
Sbjct: 77 LALKDSGTIYFEA----GDQRASA-ALRVTEKPS 105
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-06
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ ++ C+I P +W N + + + + + LV+ +
Sbjct: 19 VNLGKEICLKCEISENIPG---KWTKNGLPVQES--DRLKVVQKGRIHKLVIANALTEDE 73
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G+Y + A ++V+ P+
Sbjct: 74 GDYVFA--PDAYNVTLPA-KVHVISGPS 98
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 4e-06
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNRQS-AGNYT 76
+ V C P ++ W+HN+K + + I +++ L L+ + +G Y
Sbjct: 127 SGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 183
Query: 77 CVGFNIEGDGESNAFFLNVM 96
C + + + +L
Sbjct: 184 CYPRGSKPEDANFYLYLRAR 203
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 39.1 bits (90), Expect = 4e-04
Identities = 23/193 (11%), Positives = 41/193 (21%), Gaps = 40/193 (20%)
Query: 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ED V CD + W + K + + L + G
Sbjct: 13 YDYQEDGSVLLTCDA----EAKNITWFKDGKMIGFLTE-----DKKKWNLGSNAKDPRGM 63
Query: 75 YTCVGFNIEGDGESNAFFLNV-------------------------MYSPTCKPHQQRVL 109
Y C G + + + Q
Sbjct: 64 YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELD 168
V ++C P + W N+ + LS+ +S
Sbjct: 124 VSISGTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE--Q 178
Query: 169 YGTLICWGSNKIG 181
G +C+
Sbjct: 179 SGYYVCYPRGSKP 191
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-06
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQR 66
L + DS F P P W + K + + L + +
Sbjct: 11 TGLQDTTVSSDSVAKFAVKATGEPRP--TAIWTKDGKAITQGGKYKLSEDKGGFFLEIHK 68
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +G YTC N G S+ L +
Sbjct: 69 TDTSDSGLYTCTVKNSAGSVSSSC-KLTI 96
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-06
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGN 74
+ CD KV +N+ + + G + + N L ++V + G
Sbjct: 257 EAHLGDTLTIRCDTKQQGMT-KVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGV 315
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
YTC + + L V H
Sbjct: 316 YTCYAMGETFNETLS-VELKVYNFTLHGHHD 345
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-06
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
+K F C V+ V +W N + + + I +++ LV+ V +
Sbjct: 20 VKAAEQAVFKC-EVSDEKV-TGKWYKNGVEVRPS--KRITISHVGRFHKLVIDDVRPEDE 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKP 103
G+YT V +A LN + P
Sbjct: 76 GDYTFVPDG--YALSLSA-KLNFLEIKVSGP 103
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 6e-06
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 21 SDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQ----------GIIMTNQSLVLQRVNR 69
SDV F C + W +N+ L + ++ L L+ V
Sbjct: 26 SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF 85
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNV 95
S G Y CV N G S L +
Sbjct: 86 TSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-06
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ E F+C + W KT+ + T Q LV++ A
Sbjct: 20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSS--SRFQATRQGRKYILVVREAAPSDA 77
Query: 73 GNYTCV 78
G
Sbjct: 78 GEVVFS 83
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-05
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
+ E C + +V V+W + N L + LV++ + Q +
Sbjct: 20 VLEGGAATLRCVLSSVAA--PVKWCYGNNVLRPG--DKYSLRQEGAMLELVVRNLRPQDS 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G Y+C GD ++A L V P+
Sbjct: 76 GRYSCSF----GDQTTSA-TLTVTALPS 98
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-05
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSA 72
E + C++ + PV EW ++TL + L ++ + + A
Sbjct: 31 ATEGATAVLRCELSKMAPV---EWWKGHETLRDG--DRHSLRQDGARCELQIRGLVAEDA 85
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G Y C+ G ++A L V P+
Sbjct: 86 GEYLCMC----GKERTSA-MLTVRAMPS 108
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-05
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQ 65
+ L E + C++ V PV EW+ +TL +++ Q T L +
Sbjct: 13 QDLKTKEASEGATATLQCELSKVAPV---EWKKGPETLRDGGRYSLKQ--DGTRCELQIH 67
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
++ AG Y+C+ G ++A L V P
Sbjct: 68 DLSVADAGEYSCMC----GQERTSA-TLTVRALPA 97
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-05
Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 7/153 (4%)
Query: 49 HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRV 108
+ GI +L + V +G Y C + + ++ +
Sbjct: 72 SILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVK-- 129
Query: 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGTLSVVAYSPNSEL 167
+ +++ C P + W+ N V + G +V A
Sbjct: 130 --GYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS 187
Query: 168 DYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
+ C + + I A F
Sbjct: 188 SGEGVSCTIRSSLLGLEKTASISI--ADPFFRS 218
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-05
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM----TNQSLVLQ 65
+ L V +C++ V+W N + + + L+++
Sbjct: 12 KQLEDTTAYCGERVELECEVSEDDA--NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ A Y+ + G+S+A L+V
Sbjct: 70 GATKADAAEYSVMT----TGGQSSA-KLSV 94
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAG 73
+ E V F C PP + W K L + G + + +L ++ Q G
Sbjct: 396 FVDEGHTVQFVCRADGDPPP-AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG 454
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
Y C+ N G +S L+V
Sbjct: 455 TYLCIAANAGG-NDSMPAHLHV 475
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
+ E F C ++A P V W +++ L + + L + RV
Sbjct: 494 VGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYN--GNDYGLTINRVKGDDK 550
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G YT N G E FLNV
Sbjct: 551 GEYTVRAKNSYGTKEEIV-FLNV 572
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-05
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 14/103 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYK--VEWRHNNK-----------TLHHNIAQGIIMTNQSLV 63
+K D+ F + A + K ++W L + + +
Sbjct: 19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
+ + AGNY C + + L V S P+
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFDSCSF-DLEVHESTGTTPNID 120
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI---IMTNQSLVLQRVNRQSA 72
++ E C V W N T+ + A + ++++ +L V Q
Sbjct: 352 NVTEGMAAELKCRASTSLT--SVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDT 409
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH 104
G YTC+ N G+ ++A LNV + H
Sbjct: 410 GMYTCMVSNSVGNTTASA-TLNVTGTHHHHHH 440
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-05
Identities = 31/191 (16%), Positives = 50/191 (26%), Gaps = 37/191 (19%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNK-----TLHHNIAQGI-----------------IMT 58
V DC Y +EW ++ L QG + +
Sbjct: 16 KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS 75
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT---CKPHQQRVLGVARQE 115
LVL +Y CV LNV P P++ + +
Sbjct: 76 QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 116 KVNISCEVDANPPDVKFSWTFNNSA---------ETVNVAQAHILRSGTLSVVAY---SP 163
+ +C P K +W N E ++ SG LS+ +
Sbjct: 136 QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195
Query: 164 NSELDYGTLIC 174
+ + C
Sbjct: 196 RKDDRDASFHC 206
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 42.4 bits (98), Expect = 5e-05
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
K C + +V W+ N L + +M ++L++ ++ +G
Sbjct: 542 QHFFKHGGTAELKCS--QKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 599
Query: 74 NYTCV 78
Y C+
Sbjct: 600 VYQCL 604
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-05
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----IAQGIIMTNQSLVLQRVNRQS 71
+ S F+ V KV W+ + + +G T +L ++ V
Sbjct: 20 VAAGSPAVFEA-ETERAGV-KVRWQRGGSDISASNKYGLATEG---TRHTLTVREVGPAD 74
Query: 72 AGNYTCV 78
G+Y +
Sbjct: 75 QGSYAVI 81
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-05
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
+ DV C++ V W + K + + Q + LV++ + + A
Sbjct: 20 VAPGEDVELRCELSRAGT--PVHWLKDRKAIRKS--QKYDVVCEGTMAMLVIRGASLKDA 75
Query: 73 GNYTCVGFNIEG 84
G YTC +
Sbjct: 76 GEYTCEVEASKS 87
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 41.6 bits (96), Expect = 8e-05
Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 17/173 (9%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
V CD + W + + ++ + ++L +Q AG YTC
Sbjct: 19 APGEMVVLTCDTPEEDGIT---WTLDQSSE-------VLGSGKTLTIQVKEFGDAGQYTC 68
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
+ G+ S++ L + K + CE W
Sbjct: 69 ---HKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTT 125
Query: 138 NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190
S + ++ S V G NK V C
Sbjct: 126 ISTDLTFSVKSSRGSSDPQGV----TCGAATLSAERVRGDNKEYEYSVECQED 174
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 9e-05
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 14/92 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPVYK--VEWRHNNK-----------TLHHNIAQGIIMTNQSLV 63
+ + F + + V+W LH + + + L
Sbjct: 16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ G+Y C + SN F L V
Sbjct: 76 ITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTV 106
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 1e-04
Identities = 9/86 (10%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL---HHNIAQGIIMTNQSLVLQRVNRQSAG 73
K + P +V W L ++ + +++ R +G
Sbjct: 36 RKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLDTSRVHVRTSD--FDTVFFVRQAARSDSG 92
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP 99
Y ++ + V+
Sbjct: 93 EYELSVQIENMK-DTATIRIRVVEKA 117
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 1e-04
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQ-GIIMTNQSLVLQRVNRQS 71
++E F C V WR L H +Q G L + + +
Sbjct: 20 VEEKGTAVFTCKTEHPAA--TVTWRKGLLELRASGKHQPSQEG---LTLRLTISALEKAD 74
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
+ YTC G +S A L V
Sbjct: 75 SDTYTCDI----GQAQSRA-QLLV 93
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--- 58
+ + V C++ V W + + + + + +++
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDF--PATWYKDGQKVEES--ELLVVKMDG 62
Query: 59 -NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
L+L Q +G + C + + V
Sbjct: 63 RKHRLILPEAKVQDSGEFECRT----EGVSAFF-GVTV 95
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 2e-04
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----IAQGIIMTNQSLVLQRVNRQS 71
+ +F+ + ++ P V +W+ + L + I G L+L
Sbjct: 17 VFVGETAHFEIE-LSEPDV-HGQWKLKGQPLAASPDCEIIEDG---KKHILILHNCQLGM 71
Query: 72 AGNYTCV 78
G +
Sbjct: 72 TGEVSFQ 78
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 38.6 bits (89), Expect = 2e-04
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 16 HIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQS----------LVL 64
+ + +C W + + H + QS L +
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 65 QRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
V R G YTC + + N+ F+ V P
Sbjct: 79 DGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKP 112
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 3e-04
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAG 73
+ + + + +A +V+W N + + + ++ I + ++L + + +
Sbjct: 28 VSKGHKIRLTVE-LADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 74 NYTCV 78
Y CV
Sbjct: 86 AYQCV 90
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 3e-04
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 13/92 (14%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIM----TNQSLV 63
L + V + V+ +V W N L L+
Sbjct: 13 TPLEDQQVFVGDRVEMAVE-VSEEGA-QVMWMKNGVELTREDSFKARYRFKKDGKRHILI 70
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V ++ G Y + G+ A L V
Sbjct: 71 FSDVVQEDRGRYQVIT----NGGQCEA-ELIV 97
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 4e-04
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----IAQGIIMTNQSLVLQRVNRQS 71
+ + V F + +A P + +V+W N + + + +G + L +
Sbjct: 20 VDKGGRVRFVVE-LADPKL-EVKWYKNGQEIRPSTKYIFEHKG---CQRILFINNCQMTD 74
Query: 72 AGNYTCV 78
Y
Sbjct: 75 DSEYYVT 81
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 37.0 bits (86), Expect = 6e-04
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQS 71
+ + C VA +V W + K L + + + LV+Q+ +
Sbjct: 22 QAEAGASATLSC-EVAQAQT-EVTWYKDGKKLSSS--SKVRVEAVGCTRRLVVQQAGQAE 77
Query: 72 AGNYTCV 78
AG Y+C
Sbjct: 78 AGEYSCE 84
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 38.0 bits (87), Expect = 9e-04
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 9/117 (7%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80
+ C + V+WR + +L + L ++ + +AG CVG
Sbjct: 23 ASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT---GRSVLTVRNASLSAAGTRVCVGS 79
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWT 135
G + L V P L ++C P S++
Sbjct: 80 C-GGRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACTAHKVTPVDPNALSFS 132
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 207 | |||
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.97 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.96 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.96 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.96 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.96 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.96 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.96 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.96 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.96 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.96 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.96 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.96 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.96 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.96 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.96 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.96 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.96 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.96 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.96 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.96 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.96 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.95 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.95 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.95 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.95 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.95 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.95 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.95 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.95 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.95 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.95 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.95 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.95 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.95 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.95 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.95 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.95 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.94 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.94 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.94 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.94 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.94 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.94 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.94 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.94 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.94 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.94 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.94 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.94 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.94 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.94 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.94 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.94 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.94 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.94 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.94 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.94 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.94 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.94 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.94 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.94 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.93 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.93 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.93 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.93 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.93 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.93 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.93 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.93 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.93 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.93 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.93 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.93 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.93 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.93 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.93 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.93 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.92 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.92 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.92 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.92 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.92 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.92 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.92 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.92 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.92 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.92 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.92 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.92 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.92 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.92 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.92 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.92 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.92 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.91 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.91 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.91 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.91 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.91 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.91 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.91 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.91 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.91 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.91 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.91 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.91 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.91 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.91 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.9 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.9 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.9 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.9 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.9 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.9 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.9 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.9 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.9 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.9 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.9 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.9 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.9 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.9 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.9 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.9 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.9 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.9 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.9 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.9 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.89 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.89 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.89 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.89 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.89 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.89 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.89 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.89 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.89 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.89 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.89 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.89 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.89 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.89 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.89 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.89 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.89 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.89 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.89 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.89 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.89 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.89 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.89 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.89 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.88 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.88 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.88 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.88 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.88 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.88 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.88 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.88 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.88 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.88 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.88 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.87 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.87 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.87 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.87 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.87 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.87 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.87 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.87 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.87 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.87 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.87 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.87 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.87 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.87 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.87 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.86 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.86 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.86 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.86 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.86 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.86 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.86 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.86 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.86 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.86 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.86 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.86 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.86 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.86 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.85 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.85 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.85 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.85 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.85 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.84 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.84 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.84 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.84 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.84 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.84 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.83 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.83 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.83 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.83 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.83 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.82 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.82 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.82 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.82 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.82 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.82 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.82 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.81 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.81 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.81 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.8 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.8 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.8 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.8 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.79 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.79 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.79 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.79 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.78 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.78 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.78 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.77 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.77 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.77 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.76 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.75 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.75 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.75 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.74 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.74 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.74 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.74 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.74 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.73 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.73 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.73 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.72 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.72 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.71 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.71 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.71 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.7 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.7 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.7 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.7 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.69 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.69 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.68 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.66 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.66 | |
| 3bn3_B | 196 | ICAM-5, intercellular adhesion molecule 5, telence | 99.66 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.66 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.65 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.65 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.65 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.65 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.64 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.64 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.64 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.64 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.64 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.63 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.63 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.63 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.63 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.63 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.62 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.62 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.61 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.61 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.61 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.61 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.61 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.6 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.6 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.6 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.6 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.6 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.6 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.6 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.59 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.59 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.59 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.59 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.59 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.59 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.58 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.58 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.58 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.58 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.58 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.58 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.58 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.57 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.57 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.56 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.56 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.56 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.56 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.56 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.56 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.55 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.55 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.55 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.55 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.55 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.55 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.54 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.54 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.54 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.54 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.53 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.53 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.53 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.53 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.53 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.52 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.52 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.52 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.52 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.51 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.51 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.51 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.51 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.51 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.51 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.51 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.51 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.5 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.5 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.5 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.49 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.49 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.49 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.49 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.48 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.48 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.48 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.48 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.47 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.47 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.47 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 99.47 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.47 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.47 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.47 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.46 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.46 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.46 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.46 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.46 | |
| 1zxq_A | 192 | ICAM-2, intercellular adhesion molecule-2; immunog | 99.46 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.46 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.46 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.45 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.45 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.45 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.45 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.44 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.44 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.44 | |
| 3rgv_A | 200 | YAE62 TCR A chain; TCR, MHC, MHC class I, immune s | 99.44 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.44 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.44 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 99.44 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.43 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.43 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.42 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.42 | |
| 1ntl_A | 551 | CRRY-IG; immunology, complement, glycoprotein, SCR | 99.42 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.42 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.42 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.42 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.42 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.42 | |
| 2vsd_A | 105 | CHIR AB1; immune system receptor, FC receptor; HET | 99.41 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.41 | |
| 2eys_A | 210 | NKT15; natural killer T cell receptor, immune syst | 99.41 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.41 | |
| 4f9l_D | 259 | 20.1 anti-BTN3A1 antibody fragment; B7 superfamily | 99.4 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.4 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.4 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.39 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.39 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.38 | |
| 3qr2_A | 137 | Basigin; CD147, EMMPRIN, immunoglobulin-like domai | 99.37 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.37 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.37 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.37 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 99.37 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.37 | |
| 2qsq_A | 111 | Carcinoembryonic antigen-related cell adhesion MO; | 99.36 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.35 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.35 | |
| 3qr2_A | 137 | Basigin; CD147, EMMPRIN, immunoglobulin-like domai | 99.35 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.35 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.34 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.34 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.33 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.33 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.33 | |
| 3q0h_A | 117 | T cell immunoreceptor with IG and ITIM domains; im | 99.31 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.31 | |
| 3r08_E | 82 | T-cell surface glycoprotein CD3 epsilon chain; ant | 99.31 | |
| 3c6l_A | 185 | TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus | 98.98 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.3 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.3 | |
| 2bnu_A | 203 | TCR alpha chain, T-cell receptor alpha chain C reg | 99.3 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.3 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.3 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 99.3 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.3 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.29 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.29 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.29 | |
| 4hwn_A | 108 | FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG | 99.29 | |
| 3gsn_A | 199 | RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human | 99.29 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 99.29 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.29 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.29 | |
| 4f9p_D | 254 | 103.2 anti-BTN3A1 antibody fragment; B7 superfamil | 99.27 | |
| 4ei6_A | 208 | Valpha1 XV19 type II natural killer T cell recept | 99.27 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.27 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.27 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.27 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.26 | |
| 2nw2_A | 200 | ELS4 TCR alpha chain; T cell receptor, immune syst | 99.25 | |
| 3tjh_C | 226 | 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, | 99.25 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.25 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.24 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.24 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.24 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.24 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.23 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.23 | |
| 3mbe_C | 229 | I-AG7; T cell receptor, histocompatability antigen | 99.23 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.23 | |
| 3udw_C | 118 | Poliovirus receptor; PVR tigit IGSF signal transdu | 99.22 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.22 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.21 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.21 | |
| 1kgc_D | 206 | T-cell receptor alpha chain; LC13 clone, immune sy | 99.21 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.21 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.2 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.2 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 99.2 | |
| 1eaj_A | 126 | Coxsackie virus and adenovirus receptor; virus/vir | 99.2 | |
| 2q20_A | 109 | VK1 O18/O8 germline light chain variable domain; A | 99.2 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.2 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.19 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.19 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.19 | |
| 1pko_A | 139 | Myelin oligodendrocyte glycoprotein; IGV-domain, i | 99.19 | |
| 1qfw_M | 108 | FV, antibody (anti beta subunit) (light chain); gl | 99.19 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.18 | |
| 1olz_A | 663 | Semaphorin 4D; developmental protein, CD100, beta- | 99.18 | |
| 1xau_A | 122 | B- and T-lymphocyte attenuator; IG domain, beta sa | 99.18 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.18 | |
| 2edo_A | 121 | CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte | 99.17 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.17 | |
| 2ak4_D | 211 | SB27 T cell receptor alpha chain; bulged epitopes, | 99.17 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 99.17 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.17 | |
| 2ptt_A | 110 | CD48 antigen; CD244, CD48, NK cell receptor, X-RAY | 99.16 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.16 | |
| 1xau_A | 122 | B- and T-lymphocyte attenuator; IG domain, beta sa | 99.16 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.16 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.16 | |
| 1i8k_A | 107 | Epidermal growth factor receptor antibody MR1SCFV | 99.16 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.16 | |
| 1mqk_L | 120 | Antibody 7E2 FV fragment, light chain; membrane pr | 99.15 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.14 | |
| 1h5b_A | 113 | Murine T cell receptor (TCR) valpha domain; immune | 99.14 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 99.14 | |
| 2e27_L | 119 | Anti-ciguatoxin antibody, light chain; immunoglobu | 99.13 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.13 | |
| 3kgr_A | 106 | LAIR-1, hlair1, leukocyte-associated immunoglobuli | 99.13 | |
| 3d85_D | 306 | IL-12B, interleukin-12 subunit P40, cytotoxic lymp | 99.13 | |
| 2vsd_A | 105 | CHIR AB1; immune system receptor, FC receptor; HET | 99.12 | |
| 1oga_D | 215 | T-cell receptor alpha chain V region, beta-2-micro | 99.12 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.12 | |
| 4gos_A | 125 | V-SET domain-containing T-cell activation inhibit; | 99.12 | |
| 4gjt_B | 123 | Poliovirus receptor-related protein 4; six-bladed | 99.11 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.11 | |
| 4hwn_A | 108 | FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG | 99.11 | |
| 2oyp_A | 109 | Hepatitis A virus cellular receptor 2; TIM-3, T-ce | 99.11 | |
| 1ymm_D | 207 | T cell receptor alpha chain; protein-protein compl | 99.1 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.1 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.1 | |
| 1xt5_A | 135 | Variable region-containing chitin-binding protein | 99.09 | |
| 2or8_A | 116 | Hepatitis A virus cellular receptor 1 homolog; bet | 99.09 | |
| 3r08_E | 82 | T-cell surface glycoprotein CD3 epsilon chain; ant | 99.09 |
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=165.45 Aligned_cols=181 Identities=15% Similarity=0.238 Sum_probs=137.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCC--eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQ--SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+......... ..++ .|.|.+++..|+|.|+|.+.|..
T Consensus 7 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 85 (197)
T 2j8h_A 7 FKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG 85 (197)
T ss_dssp EEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EEEcCCccEEcCCCEEEEEEEEeecCCC-EEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECC
Confidence 3444677788999999999999988877 99999999887653322211 1233 79999999999999999999876
Q ss_pred CCCccceEEEEEEeCCcccCCC----CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEE
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQ----QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVV 159 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 159 (207)
+.. ...+.|.|..+|...... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+...+....|
T Consensus 86 g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~-~~~~~~~~~~~~~~L 162 (197)
T 2j8h_A 86 GSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDN-NGHYQVIVTRSFTSL 162 (197)
T ss_dssp EEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCC-EEEEEESSCEECS-SSSCEEEECSSEEEE
T ss_pred Cce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCC-cEEEEECCEEeec-CCCEEEEEcCCceEE
Confidence 654 556778888766543211 234456789999999999998887 9999999887642 233444445556779
Q ss_pred EEec-CCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 160 AYSP-NSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 160 ~i~~-~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|.+ +..+|+|.|+|.|.|..|..+.++.+.|+
T Consensus 163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 9999 99999999999999999987666666553
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=161.68 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=138.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+...........+. +|.|.+++.+|+|.|+|.+.+..+
T Consensus 9 ~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~ 87 (197)
T 3lcy_A 9 GIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVG 87 (197)
T ss_dssp EEEECCCCEEEETTSEEEEEEEEEEESCC-EEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSC
T ss_pred cccccCCceEEeCCCcEEEEEEEecCCCC-EEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCC
Confidence 44555677788999999999999888877 999999998886543333333332 799999999999999999998776
Q ss_pred CCccceEEEEEEeCCcccCC--CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 85 DGESNAFFLNVMYSPTCKPH--QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
.. ...+.|.|..+|..... ......+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+...+....|.|.
T Consensus 88 ~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~ 164 (197)
T 3lcy_A 88 EV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQN-SENITIENTEHYTHLVMK 164 (197)
T ss_dssp EE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC-CSSEEEEECSSEEEEEES
T ss_pred ce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC-eeEEeECCEECCC-CCceEEEEcCCEEEEEEc
Confidence 54 44667788776654432 1233456789999999999999887 9999998876542 233344445555779999
Q ss_pred cCCC-CCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 163 PNSE-LDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 163 ~~~~-~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
++.. +|+|.|+|.|.|..|....++.+.|.
T Consensus 165 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 195 (197)
T 3lcy_A 165 NVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195 (197)
T ss_dssp SCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence 9985 89999999999999988666555554
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=160.89 Aligned_cols=173 Identities=17% Similarity=0.293 Sum_probs=131.9
Q ss_pred CCCcccC-CCcEEEEeEeccCCC-CcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 13 NPDHIKE-DSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~-g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
....+.+ |+++.|.|.+.+.+. ...+.|++++..+...... ..+..|.|.+++.+|+|.|.|.+.|. +.. ...
T Consensus 10 ~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~-~~~ 84 (190)
T 2wv3_A 10 EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---ASNMEYRINKPRAEDSGEYHCVYHFV-SAP-KAN 84 (190)
T ss_dssp CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC---CSEEEEEESSCCGGGCEEEEEEEEET-TEE-EEE
T ss_pred ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE---eccEEEEEecCCcccCEEEEEEEEeC-Ccc-ccc
Confidence 3344556 999999999988775 2389999999888753221 24567999999999999999999987 443 557
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEE--cCceeee--ccceeEEeecCceEEEEEecCC-
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF--NNSAETV--NVAQAHILRSGTLSVVAYSPNS- 165 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~--~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~- 165 (207)
+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|++ ++..+.. ......+...+....|.|.++.
T Consensus 85 ~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 162 (190)
T 2wv3_A 85 ATIEVKAAPDITGH-KRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQI 162 (190)
T ss_dssp EEEEEECCCEEEEE-CSEEEEETTSCEEEEEEEECSSCC-EEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCT
T ss_pred EEEEEecCCccccc-CCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccc
Confidence 78888888765533 334457899999999999999987 999999 5554432 2233444455556689999999
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.+|+|.|+|.|.|..|....++.+.|.
T Consensus 163 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 163 TEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp TTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 799999999999999988777666654
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=163.17 Aligned_cols=180 Identities=17% Similarity=0.261 Sum_probs=135.2
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecC--CeEEEEecCCCCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+.... .......+ ..|.|.+++..|+|.|.|.+.+.
T Consensus 7 ~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 85 (194)
T 2a38_A 7 TFTQPLQSVVVLEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNG 85 (194)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred eEEccCCceEEECCCEEEEEEEEEecCCC-EEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence 44555677788999999999999888877 999999998887543 12222222 37999999999999999999987
Q ss_pred CCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEE
Q psy10918 83 EGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVV 159 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 159 (207)
.+.. .....|.|.. +|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+..++....|
T Consensus 86 ~~~~-~~~~~l~v~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~~~L 161 (194)
T 2a38_A 86 SGQA-TSTAELLVKAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTP-VVKFYRDGAEIQS-SLDFQISQEGDLYSL 161 (194)
T ss_dssp TEEE-EEEEEEEEECCCEEEEEEE-CCCCEEECTTEEEEEEEEEEEESCC-EEEEEETTEECCC-SSSEEEEEETTEEEE
T ss_pred CceE-eEEEEEEEccCCCCCEEEe-CCccEEEcCCCEEEEEEEEEEecCC-eEEEEECCEECCC-CCcEEEEEcCCEEEE
Confidence 6654 3456677763 333322 2333456789999999999998887 8999999877543 233445555666679
Q ss_pred EEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 160 AYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 160 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 162 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 162 LIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 99999999999999999999998766655443
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=164.14 Aligned_cols=183 Identities=20% Similarity=0.351 Sum_probs=132.7
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+.+...+.+..+.+|+++.|.|.+.+.+.+ .+.|++++..+......+ ....+++|.|.+++..|+|.|+|.+.+..+
T Consensus 3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 81 (189)
T 2v5t_A 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81 (189)
T ss_dssp CEEEECCSSEEEETTSCEEECCEEECSSCC-EEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred ceeeccCCCEEEeCCCcEEEEEEEcCCCCC-EEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence 355566778889999999999999888877 899999998776432222 234456899999999999999999987764
Q ss_pred CC-ccceEEEEEEeCCcccCCCCc-eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 85 DG-ESNAFFLNVMYSPTCKPHQQR-VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 85 ~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
.. ....+.+.+..+|.+...... ...+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .... .+....|.|.
T Consensus 82 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~-~~~~--~~~~~~L~i~ 157 (189)
T 2v5t_A 82 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENE-KYIL--KGSNTELTVR 157 (189)
T ss_dssp TEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC-EEEEEETTEECCCSS-SEEE--ETTTTEEEEC
T ss_pred CceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCC-eEEEEECCEECcCCC-cEEE--ecCCCEEEEc
Confidence 32 234556677766654433222 3345689999999999998887 999999987654322 1222 2223469999
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
++..+|+|.|+|.|.|..|....++.+.|.+
T Consensus 158 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 158 NIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 9999999999999999999887777777664
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=162.60 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=134.1
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe---cCCeEEEEec-CCCCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRV-NRQSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~~l~i~~~-~~~d~g~Y~C~~~~~ 82 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... .+..|.|.++ +..|+|.|+|.+.|.
T Consensus 8 ~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~ 86 (212)
T 2yd6_A 8 RFTRTPVDQTGVSGGVASFICQATGDPRP-KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN 86 (212)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEET
T ss_pred eEEeCcceeEEecCCeEEEEEEEeeCCCC-EEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcC
Confidence 44555677888999999999999988877 999999998876532222221 2346999999 599999999999987
Q ss_pred CCCCccceEEEEEEeCCccc------CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc--ceeEEeecC
Q psy10918 83 EGDGESNAFFLNVMYSPTCK------PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV--AQAHILRSG 154 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~------~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~ 154 (207)
.+.. ...+.|.|...+..+ ...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... ........+
T Consensus 87 ~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~ 164 (212)
T 2yd6_A 87 VGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQLRSE 164 (212)
T ss_dssp TEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEEC------CCEEEEEET
T ss_pred CCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-eEEEEECCccccCcCCCceEEEEecC
Confidence 7764 556778887643211 112333456789999999999999887 999999988765331 222333344
Q ss_pred ceEEEEEecCCCCCCeEEEEEEecCCCCCcc-ceEEEEee
Q psy10918 155 TLSVVAYSPNSELDYGTLICWGSNKIGHQRV-PCVFHIVS 193 (207)
Q Consensus 155 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~-~~~~~v~~ 193 (207)
....|.|.++..+|+|.|+|.|.|..|.... .+.+.+..
T Consensus 165 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence 5678999999999999999999999987643 45555554
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=163.40 Aligned_cols=179 Identities=18% Similarity=0.303 Sum_probs=132.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecC--CeEEEEecCC-CCCeeeEEEEeee
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTN--QSLVLQRVNR-QSAGNYTCVGFNI 82 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~--~~l~i~~~~~-~d~g~Y~C~~~~~ 82 (207)
+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+......... ..+ ..|.|.+++. .|+|.|+|.+.|.
T Consensus 9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~ 87 (212)
T 2yd1_A 9 IIRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENG 87 (212)
T ss_dssp EEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECS
T ss_pred EEcCCCceEEecCCEEEEEEEEccCCCC-eEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeC
Confidence 3445677788999999999999988887 99999999888632222111 122 4799999999 9999999999988
Q ss_pred CCCCccceEEEEEEeCCccc------CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCce
Q psy10918 83 EGDGESNAFFLNVMYSPTCK------PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~------~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
.+...+..+.|.|...+..+ ...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+......... .++
T Consensus 88 ~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~-~~~-- 163 (212)
T 2yd1_A 88 VGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP-NIYWIKNQTKVDMSNPRYSL-KDG-- 163 (212)
T ss_dssp SSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCC-EEEEEETTEECCTTSTTEEE-ETT--
T ss_pred CCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCC-eEEEEECCeEcccCCCeEEc-cCC--
Confidence 87744667788888653211 112333456789999999999999887 99999998775432222222 222
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCCCCccc-eEEEEe
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVP-CVFHIV 192 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~-~~~~v~ 192 (207)
.|.|.++..+|+|.|+|.|.|..|..... +.+.|.
T Consensus 164 -~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~ 199 (212)
T 2yd1_A 164 -FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199 (212)
T ss_dssp -EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred -eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence 59999999999999999999999977543 455544
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=165.38 Aligned_cols=178 Identities=17% Similarity=0.149 Sum_probs=131.5
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+++...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+... .+..|.|.+++..|+|.|+|.+.+..+.
T Consensus 19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 90 (218)
T 3k0w_A 19 SKITVNPESKAVLAGQFVKLCCRATGHPFV-QYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVNNNFTF 90 (218)
T ss_dssp CCEEECCCCEEEETTSBEEEECEETTTTSS-EEEEEETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEECTTCC
T ss_pred CEEEECCCCeEEeCCCcEEEEeeecCCCCC-EEEEEECCEECCCC-------CCCEEEEccCChhhCeEeEEEEEcCCCC
Confidence 345556777888999999999999988877 99999999877642 2468999999999999999999988776
Q ss_pred CccceEEEEEEeCCcc--------------cCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe
Q psy10918 86 GESNAFFLNVMYSPTC--------------KPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL 151 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~--------------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 151 (207)
..+..+.|.|...+.. ....+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..
T Consensus 91 ~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~~~~~~~-------- 161 (218)
T 3k0w_A 91 EFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTH-------- 161 (218)
T ss_dssp EECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC-EEEEEETTEECTT--------
T ss_pred ceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC-eEEEEECCEECCC--------
Confidence 5566677888865321 1112333456789999999999998887 9999998876431
Q ss_pred ecCceEEEEEecCCCCCCeEEEEEEecCCCC-CccceEEEEeecccCCCCCC
Q psy10918 152 RSGTLSVVAYSPNSELDYGTLICWGSNKIGH-QRVPCVFHIVSAVTFHPPFN 202 (207)
Q Consensus 152 ~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~~~~~~v~~~~~~~~p~~ 202 (207)
.....|.|.++..+|+|.|+|.|.|..|. .+..+.+.|.....+..|..
T Consensus 162 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~~~P~~ 211 (218)
T 3k0w_A 162 --ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDN 211 (218)
T ss_dssp --CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC---------
T ss_pred --CCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccCCCCCc
Confidence 22346999999999999999999998876 44555666555445555543
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=160.68 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=130.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC----CeEEEEecCCCCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+............ ..|.|.+++..|+|.|.|.+.+.
T Consensus 4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 82 (182)
T 1rhf_A 4 KLMGAPVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG 82 (182)
T ss_dssp ---CCCEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred EEEeCCcceEEeCCCcEEEEEEEeCCCCC-eEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcC
Confidence 44555666788999999999999987777 99999999888764333332222 57999999999999999999987
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
.+...+..+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.+..+.|++++..+.... .....|.|.
T Consensus 83 ~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~--------~~~~~L~i~ 153 (182)
T 1rhf_A 83 GETEISQPVWLTVEGVPFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA--------PSPSVLNVT 153 (182)
T ss_dssp TTCEECCCEEEEEECSCEEEEC-CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE--------ESSEEEEEC
T ss_pred CCcEEEEEEEEEEecCCeEEec-CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC--------CCceEEEEe
Confidence 6665566788999988765432 3334577999999999999988765999999987643211 134568888
Q ss_pred cCCCCCCeEEEEEEecCCCCCc-cceEEEE
Q psy10918 163 PNSELDYGTLICWGSNKIGHQR-VPCVFHI 191 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~-~~~~~~v 191 (207)
++ +|+|.|+|.|.|..|... ..+.+.|
T Consensus 154 ~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 154 GV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp CC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 77 589999999999998763 3555544
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=163.55 Aligned_cols=185 Identities=17% Similarity=0.352 Sum_probs=133.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc----------ccccCCeEecCCeEEEEecCCCCCeeeE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH----------HNIAQGIIMTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+. .....+....+..|.|.+++..|+|.|+
T Consensus 3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~ 81 (212)
T 1f97_A 3 SVYTAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT 81 (212)
T ss_dssp EEECSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred eEEecCCCeEEEcCCCEEEEeEeCCCCCc-EEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence 44455667788999999999999988776 999999887631 1122344455688999999999999999
Q ss_pred EEEeeeCCCC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEE-eccCCCCceEEEEEcCc-eeeeccce------
Q psy10918 77 CVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCE-VDANPPDVKFSWTFNNS-AETVNVAQ------ 147 (207)
Q Consensus 77 C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~~W~~~~~-~~~~~~~~------ 147 (207)
|.+.+..+.. ....+.|.|..+|........ ..+..|+.+.|.|. +.+.|.+ .+.|++++. .+......
T Consensus 82 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~l~~~~~~~~~~~~ 159 (212)
T 1f97_A 82 CMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMN 159 (212)
T ss_dssp EEEEETTSSSEEEEEEEEEEEBCCCCCEEECC-SEEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSS
T ss_pred EEEEccCCCcccEEEEEEEEEcCCCCcccCCc-cccCCCCeEEEEEEcccCcCCC-EEEEEeCCcccccccccccccccC
Confidence 9999876632 245677888877765533222 34678999999999 6788887 999999987 65432211
Q ss_pred eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 148 AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 148 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
...........|.|.++..+|+|.|+|.|.|..|....+..+.|.+.
T Consensus 160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp SCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred ceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 11222233446999999999999999999999998833444444443
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=162.00 Aligned_cols=174 Identities=14% Similarity=0.196 Sum_probs=132.3
Q ss_pred eeeecCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCcccccccc--CCeEec---------CCeEEEEecCCCCCeee
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIA--QGIIMT---------NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~--~~~~~~---------~~~l~i~~~~~~d~g~Y 75 (207)
|...+....+.+|+++.|.|.+. +.+.+ .+.|++++..+..... ...... +..|.|.+++..|+|.|
T Consensus 5 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 83 (195)
T 2c5d_C 5 FVGNPGNITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQY 83 (195)
T ss_dssp EEECCCCEEECTTCCEEEEEEEEEESSCC-CCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEE
T ss_pred eccChhheEEecCCcEEEecccccCCCCc-EEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEE
Confidence 44557778899999999999998 88877 9999999988876422 111111 35799999999999999
Q ss_pred EEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCc
Q psy10918 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT 155 (207)
Q Consensus 76 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 155 (207)
.|.+.+..+...+..+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+.|.+..+.|++++..+...... ..
T Consensus 84 ~C~~~~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~------~~ 156 (195)
T 2c5d_C 84 QCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH------GP 156 (195)
T ss_dssp EEEEEETTEEEECCCEEEEECCSCEEEE-CCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS------SC
T ss_pred EEEEEeCCCceecccEEEEEecCCeEEc-CCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc------CC
Confidence 9999987665545567888888776543 3333456789999999999998875589999998775432211 23
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCc-cceEEEE
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQR-VPCVFHI 191 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~~~v 191 (207)
...|.|.+++ |+|.|+|.|.|..|... ..+.+.|
T Consensus 157 ~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp CEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 4568888876 78999999999998774 5766665
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=161.83 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=123.2
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.++.+.|.|.+.+.++...+.|++++..+...........+. .|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|.
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~v~ 94 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQ 94 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHH
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEEEe
Confidence 466678888887754334999999999887644333333333 49999999999999999999866544 234444332
Q ss_pred e--------------------CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecCc
Q psy10918 97 Y--------------------SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGT 155 (207)
Q Consensus 97 ~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~ 155 (207)
. .|.+....+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... ...+. ..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~-~~~~~~~~~~ 172 (212)
T 2r15_A 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQTD-HCNLKFEAGR 172 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCC-EEEEEETTEEECCCS-SEEEEEETTT
T ss_pred eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeECccCC-CEEEEEcCCC
Confidence 1 22222223344567899999999999999987 999999987765332 22332 2355
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
...|.|.++..+|+|.|+|.|.|..|.....+.+.|.
T Consensus 173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 6789999999999999999999999988766666655
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=161.62 Aligned_cols=168 Identities=14% Similarity=0.146 Sum_probs=121.8
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+....+.+|++++|.|.+.+.+.+..+.|++++..+... ...|.|.+++.+|+|.|+|.+.|.. .+.
T Consensus 12 ~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~---~s~ 80 (204)
T 3sgj_C 12 LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------ASSYFIDAATVDDSGEYRCQTQLST---LSD 80 (204)
T ss_dssp EESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--------SSEEEESSCCGGGCEEEEEEETTSB---CCC
T ss_pred EcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--------ccEEEEecccccCCEEEEEEeCCCc---ccc
Confidence 33455678999999999999988766459999999877642 2789999999999999999998643 244
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.+.|.|..++....... ..+.+|+.+.|.|.+.+.++...+.|++++..+... .....|.|.+++.+|+
T Consensus 81 ~~~l~V~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~---------~~~~~L~i~~v~~~D~ 149 (204)
T 3sgj_C 81 PVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF---------HHNSDFYIPKATLKDS 149 (204)
T ss_dssp CEEEEEECSSEEEECSC--SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------EECCCEEESSCCGGGC
T ss_pred cEEEEEecCceEecCCc--eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc---------cCCceEEECcCCcccC
Confidence 67788887765433222 456789999999999877554599999998764321 1123589999999999
Q ss_pred eEEEEEEecCC-CCCccceEEEEeecccCCCCC
Q psy10918 170 GTLICWGSNKI-GHQRVPCVFHIVSAVTFHPPF 201 (207)
Q Consensus 170 g~y~C~~~n~~-g~~~~~~~~~v~~~~~~~~p~ 201 (207)
|.|+|.|.|.. +..+.. +.|.+.++|.+|.
T Consensus 150 G~Y~C~a~n~~~~~~s~~--~~l~V~~~~~~P~ 180 (204)
T 3sgj_C 150 GSYFCRGLVGSKNVSSET--VQITITQGLAVST 180 (204)
T ss_dssp EEEEEEEEETTEEEECCC--EEEEEEC------
T ss_pred EEEEEEEEeCCCceecCc--EEEEEeCcCCCCc
Confidence 99999999954 444344 4555556665554
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=160.66 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=131.9
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeE----ecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGII----MTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+...+....+.+|+++.|.|.+.+.+....+.|++ ++..+......... .....|.|.+++..|+|.|.|.+.+
T Consensus 4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (191)
T 1epf_A 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83 (191)
T ss_dssp CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEc
Confidence 445567778899999999999998876333999999 88777643322221 1235799999999999999999998
Q ss_pred eCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEE
Q psy10918 82 IEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVA 160 (207)
Q Consensus 82 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~ 160 (207)
..+......+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ......++ .|.
T Consensus 84 ~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~---~L~ 158 (191)
T 1epf_A 84 EDGTQSEATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNN---YLQ 158 (191)
T ss_dssp TTTEEEEEEEEEEEECCSEEEE-CCSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTTS---CEE
T ss_pred CCCcceEEEEEEEeecCceEec-CCCcEeecCCCeEEEEEEECCCCCC-EEEEEECCEEeeccCCceEEEecCC---eEE
Confidence 7754445667788877766543 2333456789999999999999987 8999999877543221 12222222 489
Q ss_pred EecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 161 YSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 161 i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.++..+|+|.|+|.|.|..+.......+.|
T Consensus 159 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 159 IRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp ETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred ECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 9999999999999999998876544444444
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=168.76 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=143.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCC--eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQ--SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+......... ..++ .|.|.+++.+|+|.|+|.+.|..
T Consensus 7 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 85 (305)
T 2nzi_A 7 FKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG 85 (305)
T ss_dssp EEECCCCEEECTTCCEEEEEEEECSSCC-EEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred eeecccceEEeCCCcEEEEEEEeCCCCC-eEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCC
Confidence 3344667888999999999999988877 99999999887653322211 2233 79999999999999999999887
Q ss_pred CCCccceEEEEEEeCCcccCCC----CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEE
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQ----QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVV 159 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 159 (207)
|.. ...+.|.|..+|.+.... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ....+...+....|
T Consensus 86 g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~-~~~~~~~~~~~~~l 162 (305)
T 2nzi_A 86 GSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNN-GHYQVIVTRSFTSL 162 (305)
T ss_dssp EEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCC-EEEEEESSSBCCSS-SSCEEEECSSEEEE
T ss_pred CCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCC-EEEEEECCEECCCC-CcEEEEEcCCceEE
Confidence 654 556778887665433211 123456789999999999999987 99999988765422 23334444556678
Q ss_pred EEec-CCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCCcee
Q psy10918 160 AYSP-NSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKL 205 (207)
Q Consensus 160 ~i~~-~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~~~~ 205 (207)
.|.+ +..+|.|.|+|.|.|..|....+ +.+.+..+|.+|.++++
T Consensus 163 ~i~~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~v~~~P~~p~~~~~ 207 (305)
T 2nzi_A 163 VFPNGVERKDAGFYVVCAKNRFGIDQKT--VELDVADVPDPPRGVKV 207 (305)
T ss_dssp EETTCCCSTTCEEEEEEEEETTEEEEEE--EEEEEEBCCCCCEEEEE
T ss_pred EEecCCccCccEEEEEEEEeCCCceeeE--EEEEEecCCCCCCCcee
Confidence 9998 99999999999999999987555 45556678888876654
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=173.22 Aligned_cols=188 Identities=22% Similarity=0.428 Sum_probs=144.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Cccccccc---cCCeEe----cCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLHHNI---AQGIIM----TNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~~~~---~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+.+..+.+|+++.|.|.+.+.|.+ .+.|+++ +..+.... ..++.. ....|.|.+++.+|+|.|.|.+.|.
T Consensus 7 ~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 85 (389)
T 2jll_A 7 LKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85 (389)
T ss_dssp CCCEEEETTSEEEEEEEEECSSCC-EEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECS
T ss_pred cCceEEeCCCeEEEEEEeecccCC-eEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeC
Confidence 455677889999999999999887 9999999 77765421 112222 2357999999999999999999998
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEE
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAY 161 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i 161 (207)
.|.. +..+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... ....+...+....|.|
T Consensus 86 ~g~~-~~~~~l~V~~~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i 162 (389)
T 2jll_A 86 IGGH-QKSMYLDIEYAPKFIS-NQTIYYSWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEI 162 (389)
T ss_dssp SCEE-EEEEEEEEEEEEEECC-SCCEEEECTTCCEEEEECEEEESCC-EEEEEETTEESSCTTCTTEEEEECSSCEEEEE
T ss_pred CCCc-ceEEEEEEEeCCEEec-CcceEEeccCCEEEEEEEEEecCCC-eEEEEECCccCCcccCceEEEeccCCEEEEEE
Confidence 8865 6678899998887654 2333356789999999999999986 999999987754432 2344555566678999
Q ss_pred ecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCCcee
Q psy10918 162 SPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKL 205 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~~~~ 205 (207)
.++...|+|.|+|.|.|..|..... +.+.+..+|.+|.++.+
T Consensus 163 ~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~v~~~P~~P~~~~~ 204 (389)
T 2jll_A 163 APTSDNDFGRYNCTATNHIGTRFQE--YILALADVPSSPYGVKI 204 (389)
T ss_dssp CCCSTTSSEEEEEEEEETTEEEEEE--EEEEECCCCCCCEEEEE
T ss_pred CCCChhhCEEEEEEEEcCCCcEEEE--EEEEecCCCCCCcceEE
Confidence 9999999999999999999986544 55566778888865543
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=165.77 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=119.3
Q ss_pred CCcccCCCcEEEEeE---eccCCCCcEEEEEECCccccccc---------------cCCe--Ee--cCCeEEEEecCCCC
Q psy10918 14 PDHIKEDSDVYFDCD---IVAVPPVYKVEWRHNNKTLHHNI---------------AQGI--IM--TNQSLVLQRVNRQS 71 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~---~~~~~~~~~i~W~~~~~~~~~~~---------------~~~~--~~--~~~~l~i~~~~~~d 71 (207)
+.++..|++++|.|. +.+.|.+ .++|+|++....... ...+ .. ....|.|.+++.+|
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 80 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 80 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence 356788999999995 4566777 999999875443100 0000 11 12359999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec---ccee
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN---VAQA 148 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~ 148 (207)
+|.|.|.+.|..|.. ...+.|.|..+|.+. ..+....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ..+.
T Consensus 81 ~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~-~~~~~~~v~~g~~~~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~r~ 157 (203)
T 4fa8_A 81 DGNYLCRMKLGETEV-TKQEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGVEPAPTAANGGV 157 (203)
T ss_dssp CEEEEEEEEETTEEE-EEEEEEEEEEEEEEE-EEEEECCSSCSCCEEEEEEEEEESCC-EEEECCC------------CC
T ss_pred CeEEEEEEEcCCCcE-EEEEEEEecCCceee-ecceeEEEcCCCEEEEEEEcCCCCCC-EEEEEECCeeecCcccccceE
Confidence 999999999887765 446778888665543 23344456789999999999999998 99999876554322 1233
Q ss_pred EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 149 HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 149 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+..++...++.+.++..+|+|.|+|.|.|..|...
T Consensus 158 ~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~ 193 (203)
T 4fa8_A 158 MKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 193 (203)
T ss_dssp EECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred EEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence 455667777788889999999999999999999764
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=163.64 Aligned_cols=181 Identities=18% Similarity=0.317 Sum_probs=139.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|++++|.|.+.+.+.+ .+.|++++..+.......... ....|.|.+++..|+|.|+|.+.|..+.
T Consensus 8 ~~~~p~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 86 (284)
T 2rik_A 8 FDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86 (284)
T ss_dssp EEECCCCEEEETTCCEEEEEEEESSSCC-EEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred EEccccceEecCCCcEEEEEEEEcCCCC-EEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCce
Confidence 3344667788999999999999988877 999999998887543322222 2357999999999999999999987765
Q ss_pred CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC
Q psy10918 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS 165 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 165 (207)
. +..+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+ .+.|++++..+... .............|.|.+++
T Consensus 87 ~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~ 163 (284)
T 2rik_A 87 D-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQES-SKFRMSFVESVAVLEMYNLS 163 (284)
T ss_dssp E-EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCC-EEEEEETTEECCCS-SSEEEEEETTEEEEEECSCC
T ss_pred E-EEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCC-EEEEEECCEECcCC-CcEEEEEcCCEEEEEECCCC
Confidence 4 557788888887755444444457799999999999998887 99999998765432 22333444556779999999
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.+|+|.|+|.|.|..|.......+.|.
T Consensus 164 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 190 (284)
T 2rik_A 164 VEDSGDYTCEAHNAAGSASSSTSLKVK 190 (284)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cccCEEEEEEEEcCCCceeEEEEEEEe
Confidence 999999999999999877666555554
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=165.10 Aligned_cols=185 Identities=22% Similarity=0.294 Sum_probs=130.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+++.|.|.+.+.+.+ .+.|++++..+...... ........|.|.+++..|+|.|+|.+.|..+.. ..
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~ 104 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NH 104 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred eeEEEccCCCEEEEEecccCCCC-eEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc-cc
Confidence 56678899999999999988877 89999999888654322 222334579999999999999999999876654 44
Q ss_pred eEEEEEEeCCc----ccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEE----cCceeeeccce-eEEee-----cCc
Q psy10918 90 AFFLNVMYSPT----CKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF----NNSAETVNVAQ-AHILR-----SGT 155 (207)
Q Consensus 90 ~~~l~v~~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~----~~~~~~~~~~~-~~~~~-----~~~ 155 (207)
.+.|.|...+. .....+....+..|+.+.|.|.+.+.|.+ .+.|++ ++..+...... ..... ...
T Consensus 105 ~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (231)
T 3ojm_B 105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183 (231)
T ss_dssp EEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSC
T ss_pred cEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEEEEECCCCCCccccCCCcceEeEecccccccCC
Confidence 66777775332 22222344567789999999999999887 999999 55543322111 11111 112
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCC
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFN 202 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~ 202 (207)
...|.|.++..+|+|.|+|.|.|..|....+ +.+.+..+|.+|..
T Consensus 184 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~p~~p~~ 228 (231)
T 3ojm_B 184 AEVLALFNVTEADAGEYICKVSNYIGQANQS--AWLTVLPKQQAPGR 228 (231)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEEE--EEEEEECCC-----
T ss_pred ccEEEEecCCHHHCeEEEEEEEeccceEeeE--EEEEEecCCCCCcc
Confidence 3469999999999999999999999987555 44555567777654
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=159.14 Aligned_cols=178 Identities=20% Similarity=0.277 Sum_probs=133.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+....... ....+..|.|.+++..|+|.|.|.+.+..+..
T Consensus 10 i~~~~~~~~~~~G~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 88 (192)
T 2iep_A 10 ITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88 (192)
T ss_dssp ESSCCCEEEEETTSCEEEECCEEEESCC-EEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred eecCccceeeeCCCcEEEEeeCCCCCCC-eEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCce
Confidence 3444566778999999999999888877 999999998876533222 22344579999999999999999999887775
Q ss_pred ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 87 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
......|.|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ........+ .|.|.++..
T Consensus 89 ~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~-~~~~~~~~~---~L~i~~~~~ 162 (192)
T 2iep_A 89 VESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKP-SVSWIKGDSALREN-SRIAVLESG---SLRIHNVQK 162 (192)
T ss_dssp EEEEEEEEEEEEEEEEEC-CCCEEEETTSCEEECCEEEEESCC-EEEEEETTEECCCC-SSEEECTTS---CEEESSCCG
T ss_pred eEeEEEEEEEeCCccccC-CcceEEeCCCcEEEEEEEeccCCc-eEEEEeCCEEccCC-CcEEEecCC---cEEEecCCh
Confidence 555677888877765432 334457789999999999998887 99999998765422 122222222 489999999
Q ss_pred CCCeEEEEEEecCCCCC-ccceEEEEe
Q psy10918 167 LDYGTLICWGSNKIGHQ-RVPCVFHIV 192 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~-~~~~~~~v~ 192 (207)
+|+|.|+|.|.|..|.. +..+.+.|.
T Consensus 163 ~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 163 EDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred hhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 99999999999999876 345555443
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=164.39 Aligned_cols=184 Identities=19% Similarity=0.231 Sum_probs=127.3
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+++.|.|.+.+.+.+ .+.|++++..+...... .......+|.|.+++..|+|.|+|.+.+..+.. ..
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~ 100 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQ 100 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred cceEEcCCCeEEEEEEecCCCCc-eeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EE
Confidence 34567899999999999988877 99999999888653322 223345679999999999999999999876654 44
Q ss_pred eEEEEEEeCCc----ccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEE----cCceeeeccceeEE-------eecC
Q psy10918 90 AFFLNVMYSPT----CKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF----NNSAETVNVAQAHI-------LRSG 154 (207)
Q Consensus 90 ~~~l~v~~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~----~~~~~~~~~~~~~~-------~~~~ 154 (207)
.+.|.|...+. .....+....+..|+.+.|.|.+.+.|.+ .+.|++ ++..+......... ....
T Consensus 101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 179 (241)
T 3grw_A 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179 (241)
T ss_dssp EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSE
T ss_pred EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEEEEcccCCCcccCCCCceeeeeeeEeeeeecC
Confidence 56677775322 11112333456789999999999999887 999999 66554322211110 0111
Q ss_pred ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCC
Q psy10918 155 TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201 (207)
Q Consensus 155 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~ 201 (207)
....|.|.++..+|+|.|+|.|.|..|....+ +.+.+.++|.+|.
T Consensus 180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~--~~l~V~~~p~~~~ 224 (241)
T 3grw_A 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKA--FWLSVHGPRAAEE 224 (241)
T ss_dssp EEEEEEECSCCGGGCEEEEEEEECSSCEEEEE--EEEEC--------
T ss_pred CceEEEECcCCcccCcEEEEEEecCcceEEEE--EEEEecCCCCCCc
Confidence 34569999999999999999999999987555 5555556665554
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-28 Score=184.54 Aligned_cols=177 Identities=18% Similarity=0.341 Sum_probs=138.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+...+ .+|.|.+++.+|+|.|.|.+.|..|.. ..
T Consensus 391 ~~~~~~~~G~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~ 468 (570)
T 3b43_A 391 PHPVETLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD-TC 468 (570)
T ss_dssp CCCEEECTTCCEEEEEEEESSSSC-CCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred CCceeecCCCEEEEEEEEecCCCC-EEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeE-EE
Confidence 445567789999999999999987 99999999988754333333333 369999999999999999999998876 44
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
...|.|..+|.+... +....+..|+.+.|.|.+.|.|++ .+.|++++..+........+...+....|.|.++..+|+
T Consensus 469 ~~~l~v~~~P~~~~~-~~~~~~~~g~~~~l~c~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 546 (570)
T 3b43_A 469 VGSITLKAPPRFVKK-LSDISTVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANA 546 (570)
T ss_dssp EEEEEECCCCEEEEC-CCCBCCBTTCCEEEEEEEESCSSC-CCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCC
T ss_pred EEEEEeccCCccccc-CCCceecCCCeEEEEEEEecCCCC-EEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHC
Confidence 667888877765532 333456789999999999998887 999999986543333344454555667899999999999
Q ss_pred eEEEEEEecCCCCCccceEEEEe
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
|.|+|.|.|..|..+.++.|.|+
T Consensus 547 G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 547 GKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp EEEEEEEECSSCEEEEEEEECCB
T ss_pred EEEEEEEEECCcEEEEEEEEEEe
Confidence 99999999999999877776554
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=158.64 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=116.8
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe-EecCCeEEEEecCCCCCeeeEEEEeeeCC-CCcc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVNRQSAGNYTCVGFNIEG-DGES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~-~~~~ 88 (207)
.+.. .+.+|++++|.|.+.+ +.+ .+.|+|++..+........ ...+..|.|.+++.+|+|.|.|.+.|..+ ...+
T Consensus 11 ~p~~-~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s 87 (196)
T 3p2t_A 11 EPGS-VISWGNSVTIWCQGTL-EAR-EYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS 87 (196)
T ss_dssp ESCS-EEETTCCEEEEEECCT-TCC-EEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred cCCC-cCCCCCcEEEEeeCCC-CCC-EEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCC
Confidence 3444 7889999999999888 445 8999999987754221111 12346799999999999999999998876 3445
Q ss_pred ceEEEEEEeCCccc--CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 89 NAFFLNVMYSPTCK--PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 89 ~~~~l~v~~~~~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
..+.|.|...+..+ ...+. ..+.+|+.++|.|.+.+. ++ .+.|++++..+.................|.|.+++.
T Consensus 88 ~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 164 (196)
T 3p2t_A 88 DPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLCQSRSP-MD-TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTS 164 (196)
T ss_dssp CCEEEEEECSSCCCEEEEESC-SEECTTCCEEEEEEEEEE-EE-EEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCG
T ss_pred ccEEEEecCCCCCCEEEeCCc-ceecCCCeEEEEEecCCC-CC-EEEEEeCCCcccceeecccccccCcceEEEeCCCcc
Confidence 56778887432211 11122 246789999999999873 43 899999987653322111221223345699999999
Q ss_pred CCCeEEEEEEecCCC
Q psy10918 167 LDYGTLICWGSNKIG 181 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g 181 (207)
+|+|.|+|.|.|..+
T Consensus 165 ~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 165 VHGGTYRCFSSHGFS 179 (196)
T ss_dssp GGCEEEEEEEECGGG
T ss_pred cCCCeEEEEEEcCCC
Confidence 999999999999876
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=161.21 Aligned_cols=180 Identities=18% Similarity=0.274 Sum_probs=129.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc--CCeEecCCeE----EEEecCCCCCeeeEEEEee
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA--QGIIMTNQSL----VLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~~l----~i~~~~~~d~g~Y~C~~~~ 81 (207)
+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+..... ......++.+ .|.+++..|+|.|+|.+.|
T Consensus 12 i~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n 90 (217)
T 2vr9_A 12 IIEHPTDLVVKKNEPATLNCKVEGKPEP-TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKN 90 (217)
T ss_dssp EEECCCCEEECTTSCEEECCEEECSSCC-EEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEE
T ss_pred EecCCCceEEeCCCcEEEEEEcCCCCCC-eEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEec
Confidence 3444667788999999999999988877 9999999988865321 1222333333 6788899999999999998
Q ss_pred eCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeec-------cceeEEeec
Q psy10918 82 IEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVN-------VAQAHILRS 153 (207)
Q Consensus 82 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~ 153 (207)
..+...+....|.|...+......+....+..|+.+.|.|.+ .+.|.+ .+.|++++..+... .........
T Consensus 91 ~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~ 169 (217)
T 2vr9_A 91 RVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169 (217)
T ss_dssp TTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EEEEEETTEEECCCCCC---CCCSEEEETT
T ss_pred CCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eEEEEECCcCCCcccccccccCCcEEecCC
Confidence 776554445667776543333334445567799999999999 778887 99999998765421 111112211
Q ss_pred CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 154 GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 154 ~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
..|.|.+++.+|+|.|+|.|.|..|....+..+.++
T Consensus 170 ---~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 170 ---GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp ---TEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ---CcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 259999999999999999999999987666554443
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=163.20 Aligned_cols=172 Identities=20% Similarity=0.401 Sum_probs=135.1
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
..+.+|+.+.|.|.+.+.|.+ .+.|++++..+.......... ....|.|.+++..|+|.|+|.+.|..|.. ...+.
T Consensus 109 ~~v~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~ 186 (284)
T 2rik_A 109 RIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTS 186 (284)
T ss_dssp EEEETTCCEEEEEEEESSSCC-EEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEE
T ss_pred eEecCCceEEEEEEEeeeCCC-EEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce-eEEEE
Confidence 357889999999999988877 999999998887543222222 23569999999999999999999887765 55778
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|.|..+|.+.. .+....+..|+.+.|.|.+.+.|++ .+.|++++..+... ....+...+....|.|.++..+|+|.|
T Consensus 187 l~V~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y 263 (284)
T 2rik_A 187 LKVKEPPVFRK-KPHPVETLKGADVHLECELQGTPPF-QVSWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEY 263 (284)
T ss_dssp EEEECCCBCCS-CCCCEEECTTCCEEEEEECBSSSCC-EEEEEETTEEECBT-TTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred EEEecCCccee-CCCcceecCCCeEEEEEEEEecCCC-EEEEEECCEECcCC-CCEEEEEcCCEEEEEEcCCCcccCEEE
Confidence 88888776553 3334456789999999999999887 99999998875433 233444555567899999999999999
Q ss_pred EEEEecCCCCCccceEEEE
Q psy10918 173 ICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~~~v 191 (207)
+|.|.|..|....++.+.|
T Consensus 264 ~C~a~N~~G~~~~~~~l~V 282 (284)
T 2rik_A 264 QCKASNDVGSYTCVGSITL 282 (284)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeCCCceeEEEEEEE
Confidence 9999999998866665554
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-28 Score=161.80 Aligned_cols=180 Identities=18% Similarity=0.328 Sum_probs=131.1
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc----------ccccCCeEecCCeEEEEecCCCCCeeeE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH----------HNIAQGIIMTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+. .....+....+..|.|.+++..|+|.|+
T Consensus 6 ~i~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~ 84 (209)
T 1nbq_A 6 TVHSSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT 84 (209)
T ss_dssp EEECSCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred EEEcCCCceEEEcCCCEEEEEEEeCCCCc-EEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEE
Confidence 34455677788999999999999988776 999999886631 1112234444588999999999999999
Q ss_pred EEEeeeCCC-CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccce------e
Q psy10918 77 CVGFNIEGD-GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQ------A 148 (207)
Q Consensus 77 C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~------~ 148 (207)
|.+.+..+. .....+.|.|..+|..+..... ..+..|+.+.|.|.+ .+.|.+ .+.|++++..+...... .
T Consensus 85 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 85 CMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIP-SSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEETTSSCEECCEEECCEEBCCCCCCCCCB-SEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEecCCCCccceEEEEEEEecCCcCCCcccc-cceecCCEEEEEEeCCCCCCCc-eeEEEECCeeCCCccccceeeecc
Confidence 999987652 2245677888887766544332 346789999999997 788887 99999998765432211 1
Q ss_pred EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 149 HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 149 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
..........|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus 163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 203 (209)
T 1nbq_A 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203 (209)
T ss_dssp CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCB
T ss_pred ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccE
Confidence 11112233469999999999999999999999987334333
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=153.70 Aligned_cols=163 Identities=14% Similarity=0.128 Sum_probs=111.8
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeC-C-CCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIE-G-DGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~-~-~~~~~~~ 91 (207)
..+.+|++++|.|.+.+.+. .+.|+|++..+...... .....+..|.|.+++..|+|.|+|.+.|.. + ...+..+
T Consensus 14 ~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~ 91 (198)
T 1ugn_A 14 SVITQGSPVTLRCQGGQETQ--EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPL 91 (198)
T ss_dssp SEEETTCCEEEEEECCTTCC--CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCE
T ss_pred CcccCCCcEEEEEEecCCCc--EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccE
Confidence 47889999999999988764 79999999877432111 112345789999999999999999999866 4 2335567
Q ss_pred EEEEEeCCcccCCC-CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-cCceEEEEEecCCCCCC
Q psy10918 92 FLNVMYSPTCKPHQ-QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGTLSVVAYSPNSELDY 169 (207)
Q Consensus 92 ~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~ 169 (207)
.|.|...+..+... .....+.+|+.+.|.|.+.+. ++ .+.|++++..+........... .+....|.|.+++.+|+
T Consensus 92 ~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~ 169 (198)
T 1ugn_A 92 ELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FD-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRR 169 (198)
T ss_dssp EEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CS-EEEEEEC------CEEEC------CCEEEEEECCCCTTSC
T ss_pred EEEEcccccCCccccCCccccCCCCcEEEEEecCCC-Cc-EEEEEECCCccCCccccccccCCCcceeEEEecccCcccC
Confidence 78888632211111 112356799999999999988 55 9999999876432211111111 22346799999999999
Q ss_pred eEEEEEEecCCC
Q psy10918 170 GTLICWGSNKIG 181 (207)
Q Consensus 170 g~y~C~~~n~~g 181 (207)
|.|+|.|.|..+
T Consensus 170 G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 170 WWYRCYAYDSNS 181 (198)
T ss_dssp EEEEEEEECTTS
T ss_pred eEEEEEEEeCCC
Confidence 999999999865
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=164.94 Aligned_cols=180 Identities=20% Similarity=0.354 Sum_probs=134.2
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCCC-Ccc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD-GES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~ 88 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+....... ....++.|.|.+++..|+|.|+|.+.|..+. ...
T Consensus 106 ~~~~~~~~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 184 (291)
T 1qz1_A 106 APTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINF 184 (291)
T ss_dssp CCSSEEEETTSCEEECCEEECSSCC-EEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred CCCcccccCCCeEEEEEEeccCCCC-EEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceee
Confidence 3456678899999999999998877 899999998876433222 3345678999999999999999999986533 334
Q ss_pred ceEEEEEEeCCcccCCC-CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCC
Q psy10918 89 NAFFLNVMYSPTCKPHQ-QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 89 ~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~ 166 (207)
..+.+.|..+|.+.... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ...+........|.|.++..
T Consensus 185 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 263 (291)
T 1qz1_A 185 KDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK 263 (291)
T ss_dssp EEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG
T ss_pred EEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC-cEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecCh
Confidence 45677777777654322 223345689999999999999987 9999999877543321 01222233345799999999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 264 ~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 264 NDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 99999999999999988777666655
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=171.14 Aligned_cols=171 Identities=19% Similarity=0.288 Sum_probs=134.3
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe----cCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM----TNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.......+.. .+..|.|.+++.+|+|.|.|.+.|..|...+
T Consensus 220 ~~~~~~~G~~v~l~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 298 (395)
T 1bih_A 220 KDMMAKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298 (395)
T ss_dssp CSEEEETTSCEEEEEEEECSSCC-CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred CceEEECCCcEEEEEEeccCCCC-eEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceE
Confidence 45668899999999999998887 899999998886543333221 2237999999999999999999998887755
Q ss_pred ceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 89 NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 89 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
..+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+ .+.|++++..+... +..+ .+. .|.|.++..+|
T Consensus 299 ~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~--~~~--~L~i~~~~~~d 371 (395)
T 1bih_A 299 HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLSGG--RATV--TDS--GLVIKGVKNGD 371 (395)
T ss_dssp EEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTEECCSS--SEEE--ETT--EEEESSCCSTT
T ss_pred EEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCC-eeEEEECCEECCCC--ceEE--ECC--EEEEeeCCccc
Confidence 57889999888765433333567899999999999999987 89999998775322 2222 222 69999999999
Q ss_pred CeEEEEEEecCCCCCccceEEEE
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+|.|+|.|.|..|....++.+.|
T Consensus 372 ~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 372 KGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEEEEccCCCceEEEEEEE
Confidence 99999999999998866655544
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=155.27 Aligned_cols=180 Identities=18% Similarity=0.318 Sum_probs=128.9
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc----CCeEecCCe-----EEEEecCCCCCeeeEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA----QGIIMTNQS-----LVLQRVNRQSAGNYTC 77 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~~-----l~i~~~~~~d~g~Y~C 77 (207)
.+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+..... ......++. |.|.+++..|+|.|+|
T Consensus 11 ~i~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 89 (212)
T 2v9r_A 11 RIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVC 89 (212)
T ss_dssp EEEECCCCEEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEE
T ss_pred ceecCCCceEEeCCCcEEEEEEcCCCCCC-EEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEE
Confidence 44455677788999999999999888877 9999999988764321 112223333 3445668999999999
Q ss_pred EEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEeecCce
Q psy10918 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156 (207)
Q Consensus 78 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
.+.+..+...+..+.|.|...+......+....+..|+.+.|.|.+ .+.|.+ .+.|++++..+......... ..
T Consensus 90 ~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~l~~~~~~~~~-~~--- 164 (212)
T 2v9r_A 90 VARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDKDERITI-RG--- 164 (212)
T ss_dssp EEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EEEEEETTEEECTTSTTEEE-ET---
T ss_pred EEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EEEEEECCccCCCCcceEEc-cC---
Confidence 9998776554556677777654433334444567899999999998 778887 99999998775432222111 22
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCCCCcc-ceEEEEe
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIGHQRV-PCVFHIV 192 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~-~~~~~v~ 192 (207)
..|.|.++..+|+|.|+|.|.|..|.... .+.+.|.
T Consensus 165 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~ 201 (212)
T 2v9r_A 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201 (212)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence 25899999999999999999999987543 3455544
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=151.19 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=119.9
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+....+.+|++++|.|.+.+.+.+..+.|++++..+.. .+..|.|.+++.+|+|.|.|.+.+..+ +.
T Consensus 12 ~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~ 80 (175)
T 1fnl_A 12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTNLSTL---SD 80 (175)
T ss_dssp EESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECSSSCC---CC
T ss_pred EcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------CceEEEEeCCCcccCEEEEEEeeCCcc---cc
Confidence 3455667899999999999988876645899999877653 256899999999999999999987443 44
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.+.|.|..++..... ....+.+|+.+.|.|.+.+.+++..+.|++++..+... .....|.|.+++.+|+
T Consensus 81 ~~~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~---------~~~~~L~i~~v~~~d~ 149 (175)
T 1fnl_A 81 PVQLEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDS 149 (175)
T ss_dssp CEEEEEECSSEEEEC--SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------EECCCEEESSCCGGGC
T ss_pred cEEEEEeCCCceeeC--CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC---------CCCCEEEEcccChhhC
Confidence 667888755443322 22346789999999999988765699999998765321 1123589999999999
Q ss_pred eEEEEEEecCCCC-CccceEEEE
Q psy10918 170 GTLICWGSNKIGH-QRVPCVFHI 191 (207)
Q Consensus 170 g~y~C~~~n~~g~-~~~~~~~~v 191 (207)
|.|+|.|.|..+. .+..+.+.|
T Consensus 150 G~Y~C~a~n~~~~~~s~~~~l~V 172 (175)
T 1fnl_A 150 GSYFCRGLVGSKNVSSETVNITI 172 (175)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEEEEEcCCCCccCccEEEEE
Confidence 9999999997653 333444433
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=175.86 Aligned_cols=179 Identities=18% Similarity=0.321 Sum_probs=138.0
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... ....|.|.+++.+|+|.|+|.+.|..|.. +
T Consensus 203 ~p~~~~v~~G~~~~l~C~~~g~p~p-~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~ 280 (570)
T 3b43_A 203 KPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-S 280 (570)
T ss_dssp CCCCBCCBSBSCEEEEEEEESSSCC-EEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEE-E
T ss_pred CCceeEecCCCeEEEEEEEEECCCC-EEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcE-E
Confidence 3455667899999999999998877 999999999886543322222 23579999999999999999999987765 5
Q ss_pred ceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 89 NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 89 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
..+.|.|..+|.+.........+..|+.+.|.|.+.|.|.+ .+.|++++..+... ....+........|.|.+++.+|
T Consensus 281 ~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p-~v~W~k~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~D 358 (570)
T 3b43_A 281 CSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQES-SKFRMSFVESVAVLEMYNLSVED 358 (570)
T ss_dssp EEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSC-EEEEEETTEECCCS-SSEEEEEETTEEEEEEESCCGGG
T ss_pred EEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCC-EEEEeECCEECCCC-CcEEEEEECCEEEEEECCCCccc
Confidence 56778888777654333333346789999999999999887 99999998875432 22333344556679999999999
Q ss_pred CeEEEEEEecCCCCCccceEEEEee
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
+|.|+|.|.|..|....++.+.|..
T Consensus 359 ~G~Y~C~a~N~~g~~~~~~~l~V~~ 383 (570)
T 3b43_A 359 SGDYTCEAHNAAGSASSSTSLKVKE 383 (570)
T ss_dssp CEEEEEEEEBTTBCCEEEEEECEEC
T ss_pred CEEEEEEEEeCCCEEEEEEEEEecC
Confidence 9999999999999887776665543
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=155.54 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=118.8
Q ss_pred CcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecC--C--eEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 15 DHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTN--Q--SLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+.+|+.+.|.|.+.. .|.+ .+.|++|+.++.......+..+. + +|.|.+++.+|+|.|+|.+.| |.. ..
T Consensus 12 ~~v~eg~~v~l~c~~~~~~P~p-~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a-~~ 87 (207)
T 3rbs_A 12 VEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKA-TN 87 (207)
T ss_dssp EEECGGGCEEEEEECSCCCSCC-EEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTE-EE
T ss_pred eEEEeCCeEEEEEEEecCCCCC-EEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCe-EE
Confidence 56789999999999865 5766 99999999999765444443332 2 599999999999999999998 333 22
Q ss_pred eEEEEEE---------------------eCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce
Q psy10918 90 AFFLNVM---------------------YSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ 147 (207)
Q Consensus 90 ~~~l~v~---------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~ 147 (207)
...+.+. .+|.+.. .. ...+.+|..+.|.|.+.+. |.| .+.|++++..+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~-~~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~l~~~~-- 162 (207)
T 3rbs_A 88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YL-SWEVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDE-- 162 (207)
T ss_dssp EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEE-EE-EEEEETTTEEEEEEEEESCCTTC-EEEEEETTEEECCCC--
T ss_pred EEEEEEEccchhhhcccccccccccccCCCCceEe-cC-CcEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEECCCCC--
Confidence 2222211 0222211 11 2456789999999999998 776 999999998764321
Q ss_pred eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 148 AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 148 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
++........|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 163 -~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 203 (207)
T 3rbs_A 163 -KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203 (207)
T ss_dssp -CCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred -ceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 12223344569999999999999999999999987665444
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=156.67 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=120.0
Q ss_pred cCCCcccCC--CcEEEEeEeccCCCCcEEEEEEC---CccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKED--SDVYFDCDIVAVPPVYKVEWRHN---NKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g--~~v~l~C~~~~~~~~~~i~W~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+| ++++|.|.+.+ |.+ .+.|+++ +..+... ..........|.|.+++.+|+|.|.|.+.|..+..
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~-~v~w~~~~~~g~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~ 90 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRFVPDG-NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESY 90 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTC-CEEEEEETTTEEECCCS-SSCEEETTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred ceEEEEecCCCccEEEeeccCC-CCc-EEEEEhhcCCCccccCC-CcccccCCccEEEccCChhcCceEEEEEEECCeeE
Confidence 355678889 99999999976 555 8999884 5555433 22333445689999999999999999998754444
Q ss_pred ccceEEEEEEe--CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccc-eeEEee------cCce
Q psy10918 87 ESNAFFLNVMY--SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVA-QAHILR------SGTL 156 (207)
Q Consensus 87 ~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~------~~~~ 156 (207)
.+..+.|.|.. +|.+.........+.+|+.+.|.|.+.+.|. +..+.|++++..+..... ...... ....
T Consensus 91 ~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (213)
T 2x1w_L 91 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 170 (213)
T ss_dssp ECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEE
T ss_pred EEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeee
Confidence 34446666643 1222222223336789999999999998654 348999998876322111 001110 1124
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus 171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 206 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206 (213)
T ss_dssp EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence 569999999999999999999999988666665554
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=149.62 Aligned_cols=169 Identities=15% Similarity=0.267 Sum_probs=122.3
Q ss_pred CCcccCCCcEEEEeEeccCCCC-cEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
...+.+|++++|.|.+.+.+.+ ..+.|++++..+....... ....|.|. +..|+|.|.|.+.+ .....+.
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~---~~~~l~i~--~~~d~G~Y~C~~~n----~~~~~~~ 77 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---QKTEFKVD--SDDQWGEYSCVFLP----EPMGTAN 77 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC---SEEEEEEC--GGGCCEEEEEEEES----TTSCEEE
T ss_pred EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC---CcEEEEEe--chhhCeEEEEEEEC----CcCcEEE
Confidence 3457889999999998775443 2899999998876532111 12235444 68999999999997 2235677
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEE---cCceeeecc--ceeEEeecCceEEEEEecCC-C
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF---NNSAETVNV--AQAHILRSGTLSVVAYSPNS-E 166 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~---~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~ 166 (207)
|.|..+|.+.... ....+..|+.+.|.|.+.+.|+++.+.|++ ++....... .+..+...+..+.|.|.++. .
T Consensus 78 l~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 156 (184)
T 3b5h_A 78 IQLHGPPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156 (184)
T ss_dssp EEECCSCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT
T ss_pred EEEecCCceeecC-CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc
Confidence 8888877655433 334567899999999999998334999999 454432221 33445555666789999999 8
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|+|.|+|.|.|..|.....+.+.|.
T Consensus 157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 157 ADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCceEEEEEEeCCCcceEEEEEEEe
Confidence 99999999999999987666555543
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=152.59 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=106.3
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC-ccceEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG-ESNAFF 92 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~~ 92 (207)
..+.+|++++|.|.+.+.+. .+.|+|++..+...... .....+..|.|.+++..|+|.|+|.+.|..+.. .+..+.
T Consensus 14 ~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 91 (196)
T 2d3v_A 14 SVISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLE 91 (196)
T ss_dssp SEEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEE
T ss_pred CcccCCCeEEEEEeCCCCCc--EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEE
Confidence 37889999999999987653 89999999877532111 112234579999999999999999998865532 245677
Q ss_pred EEEEeC---CcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-CceEEEEEecCCCCC
Q psy10918 93 LNVMYS---PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELD 168 (207)
Q Consensus 93 l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~ 168 (207)
|.|... |.+.. .+ ...+.+|+.+.|.|.+.+.| + .+.|++++..+............ .....|.|.+++.+|
T Consensus 92 l~V~~~~~~p~i~~-~~-~~~v~~G~~v~L~C~~~~~p-~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 167 (196)
T 2d3v_A 92 LVVTGFYNKPTLSA-LP-SPVVTSGENVTLQCGSRLRF-D-RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSH 167 (196)
T ss_dssp EEEECSSCCCEEEC-------------CEEEEEESSCC-S-EEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTB
T ss_pred EEecCCCCCCeEEc-cC-CccccCCCcEEEEEEcCCCC-C-EEEEEccCCcccccccccccccCCCceeEEEeeecCccc
Confidence 888763 32221 22 23567899999999999887 5 99999998765322111111111 234679999999999
Q ss_pred CeEEEEEEecCCC
Q psy10918 169 YGTLICWGSNKIG 181 (207)
Q Consensus 169 ~g~y~C~~~n~~g 181 (207)
+|.|+|.|.|..+
T Consensus 168 ~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 168 RWMLRCYGSRRHI 180 (196)
T ss_dssp CEEEEEEEEETTE
T ss_pred CeeEEEEEEccCC
Confidence 9999999999654
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=151.73 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=117.8
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....+.+|++++|.|.+.+.+.+..+.|++++..+.. .+..|.|.+++.+|+|.|.|.+.+..+ +..
T Consensus 10 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~ 78 (176)
T 1f2q_A 10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQQVNE---SEP 78 (176)
T ss_dssp ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECTTSSC---CCC
T ss_pred CCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------CceEEEEeccceecCEEEEEEcCCccc---ccc
Confidence 355567899999999999988876547999999987653 257899999999999999999987543 445
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
+.|.|..++..... ....+.+|+.+.|.|.+.+.++.+.+.|++++..+.. ......|.|.+++.+|+|
T Consensus 79 ~~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~---------~~~~~~L~i~~v~~~d~G 147 (176)
T 1f2q_A 79 VYLEVFSDWLLLQA--SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY---------WYENHNISITNATVEDSG 147 (176)
T ss_dssp EEEEEECSSEEEEE--SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS---------CCCSSEEEESSCCGGGCE
T ss_pred EEEEEeCcceeecC--CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee---------ecCCCeEEECCCCcccCE
Confidence 67777744433221 2235679999999999965444349999999876532 122346999999999999
Q ss_pred EEEEEEecCCC-CCccceEEEEeecccCC
Q psy10918 171 TLICWGSNKIG-HQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 171 ~y~C~~~n~~g-~~~~~~~~~v~~~~~~~ 198 (207)
.|+|.|.|..+ ..+.. +.|.+.++|.
T Consensus 148 ~Y~C~a~n~~~~~~s~~--~~l~V~~~p~ 174 (176)
T 1f2q_A 148 TYYCTGKVWQLDYESEP--LNITVIKAPR 174 (176)
T ss_dssp EEEEEEEETTEEEECCC--EEEEEECSCC
T ss_pred EEEEEEEeCCcceEecC--EEEEEecCCC
Confidence 99999999743 33333 4455555553
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=163.21 Aligned_cols=177 Identities=19% Similarity=0.350 Sum_probs=128.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCCCC-ccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG-ESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~ 89 (207)
+....+.+|+++.|.|.+.+.+.+ .+.|++++..+....... ....+..|.|.+++..|+|.|.|.+.+..+.. ...
T Consensus 105 ~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~ 183 (291)
T 2wim_A 105 VSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 183 (291)
T ss_dssp CCSEEEETTSCEEECCCCBCSSCC-EEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred CCChhhcCCCCEEEEEEEccCCCC-EEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEe
Confidence 345567899999999999998877 899999998776432222 33446789999999999999999999876432 234
Q ss_pred eEEEEEEeCCcccCCCCc-eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQR-VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
.+.+.+..+|.+...... ...+..|+.+.|.|.+.+.|.+ .+.|++++..+.... ...+ ......|.|.++..+|
T Consensus 184 ~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~-~~~~--~~~~~~L~i~~~~~~d 259 (291)
T 2wim_A 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENE-KYIL--KGSNTELTVRNIINSD 259 (291)
T ss_dssp EEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCC-EEEEEETTEECCCTT-TEEE--CSTTCEEEEESCCSTT
T ss_pred eEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCC-eEEEEECCEECcCCc-cEEE--cCCccEEEEeeCCccc
Confidence 566777777765433221 3345689999999999999887 999999987654322 1222 2233469999999999
Q ss_pred CeEEEEEEecCCCCCccceEEEEee
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
+|.|+|.|.|..|....++.+.|..
T Consensus 260 ~G~Y~C~a~N~~G~~~~~~~l~v~~ 284 (291)
T 2wim_A 260 GGPYVCRATNKAGEDEKQAFLQVFV 284 (291)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEC--
T ss_pred CEEEEEEEEECCCceeeeEEEEEEE
Confidence 9999999999999887776665554
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=153.68 Aligned_cols=181 Identities=19% Similarity=0.236 Sum_probs=123.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc------------------ccCCeEecCCeEEEEecCCCCCe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN------------------IAQGIIMTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~------------------~~~~~~~~~~~l~i~~~~~~d~g 73 (207)
+.+..+.+|+++.|.|...+.+.+ .+.|++++...... ........+++|.|.+++..|+|
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 6 AVPPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG 84 (208)
T ss_dssp EESSEEETTCCEEEEEECCCSSCS-EEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCE
T ss_pred CccceeecCCcEEEEEeCCCCCce-EEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCe
Confidence 344668899999999997777766 99999975432210 01112233467999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS 153 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 153 (207)
.|+|.+.+..+......+.|.|..++..+........+..|+.+.|.|.+.+.| + .+.|++++..+... ........
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~p-p-~i~W~~~g~~l~~~-~~~~~~~~ 161 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-A-NIQWLFNSQSLQLT-ERMTLSQN 161 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTT-C-EEEEEETTEECCCC-SSEEEETT
T ss_pred EEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCC-C-ceEEEECCEeCCCC-CCeEEcCC
Confidence 999999987544445566788876543332221111267899999999999865 5 99999988765422 12222222
Q ss_pred CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCC
Q psy10918 154 GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHP 199 (207)
Q Consensus 154 ~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~ 199 (207)
+ ..|.|.++..+|+|.|+|.|.|..|... +..+.+.+..++..
T Consensus 162 ~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 162 N--SILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKLDIIFDPHH 204 (208)
T ss_dssp T--TEEEESSCCGGGCEEEEEEEECTTCCEE-CCCEEECCC-----
T ss_pred C--CEEEEeccCHHhCeEEEEEEecCCCccc-CCceeeeEEeCCcc
Confidence 2 4699999999999999999999998754 33455555555443
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=160.87 Aligned_cols=182 Identities=15% Similarity=0.229 Sum_probs=130.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEe----cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIM----TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+...+....+.+|+++.|.|.+.+.++...+.|++ ++..+.......... ....|.|.+++..|+|.|+|.+.+
T Consensus 4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 83 (291)
T 1qz1_A 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83 (291)
T ss_dssp CEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred ceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEc
Confidence 344557777899999999999999876333999999 777766433222111 235799999999999999999998
Q ss_pred eCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEE
Q psy10918 82 IEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVA 160 (207)
Q Consensus 82 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~ 160 (207)
..+...+..+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..... ......+ ..|.
T Consensus 84 ~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~---~~L~ 158 (291)
T 1qz1_A 84 EDGTQSEATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN---NYLQ 158 (291)
T ss_dssp TTSCEEEEEEEEEEECCSEEEE-CCSSEEEETTSCEEECCEEECSSCC-EEEEEETTSCSSTTCCTTEEECTT---SCEE
T ss_pred CCCCeeEEEEEEEeeccccccC-CCCcccccCCCeEEEEEEeccCCCC-EEEEEECCEEcccCCCceEEEccC---CcEE
Confidence 8765555677788876665443 2334457899999999999999887 9999999876532221 1112222 2489
Q ss_pred EecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 161 YSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 161 i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
|.++..+|+|.|+|.|.|..+.......+.+.+
T Consensus 159 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v 191 (291)
T 1qz1_A 159 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191 (291)
T ss_dssp ETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred EccCccccCeEEEEEEEecCCCceeeEEEEEEE
Confidence 999999999999999999765433333333333
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=174.46 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=135.5
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
...+.+|+++.|.|.+.+ +.+ .+.|++++..+.......+...+..|.|.+++..|+|.|.|.+.|..|...+..+.|
T Consensus 476 ~~~v~~g~~v~l~C~~~~-~~~-~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l 553 (642)
T 1e07_A 476 SKPVEDKDAVAFTCEPEA-QNT-TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553 (642)
T ss_pred ceeecCCCeEEEEEECCC-CCc-EEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEE
Confidence 345678999999999984 555 999999999887644333334467899999999999999999999988766667889
Q ss_pred EEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 94 NVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
.|..+|..+...+....+..|+.+.|.|.+.+.|++ .+.|+++|..+.. ...|.|.++..+|+|.|+
T Consensus 554 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~g~~i~~------------~~~L~i~~~~~~d~G~Y~ 620 (642)
T 1e07_A 554 DVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP-QYSWRINGIPQQH------------TQVLFIAKITPNNNGTYA 620 (642)
T ss_pred EEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCC-eEEEEECCEECcc------------CceEEECcccccCCeEEE
Confidence 998877655445555667899999999999999987 9999999876421 135889999999999999
Q ss_pred EEEecCCCCCccceEEEEeec
Q psy10918 174 CWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 174 C~~~n~~g~~~~~~~~~v~~~ 194 (207)
|.|.|..|....++.+.|.+.
T Consensus 621 C~a~N~~G~~~~s~~l~V~v~ 641 (642)
T 1e07_A 621 CFVSNLATGRNNSIVKSITVS 641 (642)
T ss_pred EEEEecccCcceeEEEEEEEc
Confidence 999999999988888777654
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=169.63 Aligned_cols=168 Identities=20% Similarity=0.315 Sum_probs=130.0
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
...+.+|+++.|.|.+.+.|.+ .+.|+++ +..+... ......++.|.|.+++.+|+|.|+|.+.|..|.. .....
T Consensus 214 ~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 289 (384)
T 3kld_A 214 TVPAEKGTTVKLECFALGNPVP-TILWRRADGKPIARK--ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQ 289 (384)
T ss_dssp EEEEETTSCEEEEEEEEEESCC-EEEEEETTCCCCCTT--CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred ceEecCCCcEEEEEEEeecCCC-cEEEEeCCCcccccc--ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEE
Confidence 4457789999999999999988 9999995 4444331 1222345689999999999999999999988866 44667
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|.|..+|.+... +....+..|+.+.|.|.+.|.|.| .+.|+++|..+... .+..+ ..+ .|.|.++..+|+|.|
T Consensus 290 l~v~~~P~~~~~-~~~~~v~~g~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~-~~~~~-~~~---~L~i~~v~~~D~G~Y 362 (384)
T 3kld_A 290 LTFYAQPNWVQI-INDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPLLTR-DRIQI-EQG---TLNITIVNLSDAGMY 362 (384)
T ss_dssp EEEEEEEEEEEC-CCCEEECTTCCEEEECEEEEESCC-EEEEEETTEECCCB-TTEEE-ETT---EEEESSCCGGGCEEE
T ss_pred EEEecCCccccC-CCceEecCCCCEEEEeECCccCCC-eEEEEECCEECCCC-ccEEE-eCC---EEEEeecChhhCEEE
Confidence 888877765432 333456789999999999999987 99999999775422 12222 222 589999999999999
Q ss_pred EEEEecCCCCCccceEEEEe
Q psy10918 173 ICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|.|.|..|....++.|.|+
T Consensus 363 ~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 363 QCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEeCCceEEeceEEEEe
Confidence 99999999998888777765
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=169.15 Aligned_cols=176 Identities=18% Similarity=0.298 Sum_probs=135.9
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...........+..|.|.+++.+|+|.|+|.+.|..+.. ...
T Consensus 227 ~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~ 304 (403)
T 3laf_A 227 RPSNVIAIEGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SAS 304 (403)
T ss_dssp CCCCEEEETTSCEEECCEEEEESCC-EEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred CCCceEecCCCcEEEEEEcCCCCCC-eEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCce-EEE
Confidence 3455667899999999999998887 99999999888765444445567789999999999999999999887655 557
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ...... .+ ..|.|.++..+|+|
T Consensus 305 ~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~-~~~~~~-~~--~~L~i~~v~~~d~G 378 (403)
T 3laf_A 305 AELTVLVPPWFLNH-PSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVIPS-DYFQIV-GG--SNLRILGVVKSDEG 378 (403)
T ss_dssp EEEEEEEEEEEEEC-CCCEECCTTCCEEECCEEEEESCC-EEEEEETTEECCCS-SSEEEE-TT--TEEEESSCCGGGCE
T ss_pred EEEEEECCCcEeec-CcceEEecCCeEEEEEEEeeccCC-EEEEEECCEECCCC-CcEEEe-cC--ccEEEeccccccCE
Confidence 78888887765432 333456789999999999999987 99999998765322 122222 22 35899999999999
Q ss_pred EEEEEEecCCCCCccceEEEEeeccc
Q psy10918 171 TLICWGSNKIGHQRVPCVFHIVSAVT 196 (207)
Q Consensus 171 ~y~C~~~n~~g~~~~~~~~~v~~~~~ 196 (207)
.|+|.|.|..|....++.+ .+.+|
T Consensus 379 ~Y~C~a~N~~G~~~~~~~l--~V~~P 402 (403)
T 3laf_A 379 FYQCVAENEAGNAQSSAQL--IVPKP 402 (403)
T ss_dssp EEEEEEEETTEEEEEEEEE--ECCCC
T ss_pred EEEEEEEcCCceEEEEEEE--EEeCC
Confidence 9999999999988666444 44444
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=169.84 Aligned_cols=171 Identities=18% Similarity=0.306 Sum_probs=133.3
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+.+|+++.|.|.+.+.|.+ .+.|++++..+..... .....+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|.
T Consensus 232 ~~~~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 308 (404)
T 3p3y_A 232 QMVLRGMDLLLECIASGVPTP-DIAWYKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVR 308 (404)
T ss_dssp EEEETTSCEEEECCBCCSSCC-EEEEEETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEE
T ss_pred ceEecCCCEEEEEEECCCCCC-cEEEEECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEE
Confidence 347789999999999998887 9999999988765332 333446789999999999999999999988765 5577888
Q ss_pred EEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 95 VMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+............+. .|.|.++..+|+|.|+|
T Consensus 309 V~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C 384 (404)
T 3p3y_A 309 VKAAPYWLD-EPKNLILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQC 384 (404)
T ss_dssp EEEEEEEEE-CCCCEEECTTCCEEEECEEEEESCC-EEEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEE
T ss_pred EeCCCeeec-cCCcceeecCCcEEEEEEccccCCC-ceEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEE
Confidence 888776543 3333456789999999999999887 9999999887543321111222222 59999999999999999
Q ss_pred EEecCCCCCccceEEEEe
Q psy10918 175 WGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 175 ~~~n~~g~~~~~~~~~v~ 192 (207)
.|.|..|....++.+.|+
T Consensus 385 ~a~N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 385 NTSNEHGYLLANAFVSVL 402 (404)
T ss_dssp EEEETTEEEEEEEEEEEC
T ss_pred EEEeCCCcEEEEEEEEEE
Confidence 999999988777666554
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=144.76 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=117.1
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
|...+. ..+....+.+|+++.|.|.+.+.+....+.|++++..+... ...+.+.+++..|+|.|+|.+.+
T Consensus 3 p~p~i~--~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~~ 72 (170)
T 3ry4_A 3 PKAVLK--LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQ 72 (170)
T ss_dssp CBCEEE--EESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEEETT
T ss_pred CCCEEE--eCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------ccceEEEecccccCeEEEEEEeC
Confidence 444444 33555678899999999999887644489999999887652 34577889999999999999986
Q ss_pred eCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 82 IEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 82 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
... +..+.|.|..++..... ....+.+|+.+.|.|.+.+.++...+.|++++..+.. ......|.|
T Consensus 73 ~~~---s~~~~l~v~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~---------~~~~~~L~i 138 (170)
T 3ry4_A 73 TSL---SDPVHLTVLFEWLVLQT--PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF---------SHLDPTFSI 138 (170)
T ss_dssp SBC---CCCEEEEEECCSEEEEC--SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE---------ESSCCEEEE
T ss_pred CCc---eEeEEEEEECCceEecC--CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc---------cCCCCeEEE
Confidence 433 44677888876543322 2234678999999999965544349999998876432 122345899
Q ss_pred ecCCCCCCeEEEEEEecCCCC
Q psy10918 162 SPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.++..+|+|.|+|.|.|..|.
T Consensus 139 ~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 139 PQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp SSCCGGGCEEEEEEEEETTEE
T ss_pred EeccccCCEEEEEEEEeCcCc
Confidence 999999999999999999885
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=161.80 Aligned_cols=182 Identities=16% Similarity=0.247 Sum_probs=125.8
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC---CeEEEEecCC-CCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNR-QSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~-~d~g~Y~C~~~~~ 82 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...........+ ..|.|.+++. .|+|.|+|.+.|.
T Consensus 8 ~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~ 86 (304)
T 2yd9_A 8 RFIKEPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNS 86 (304)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECS
T ss_pred eeeecCCceEecCCCeEEEEEEEEEeCCC-eEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECC
Confidence 34455677788999999999999988887 99999999887543211111122 4699999998 9999999999988
Q ss_pred CCCCccceEEEEEEeCCccc------CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCce
Q psy10918 83 EGDGESNAFFLNVMYSPTCK------PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~------~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
.|.. ...+.|.|...+..+ ...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+........+.....
T Consensus 87 ~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~- 163 (304)
T 2yd9_A 87 VGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRS- 163 (304)
T ss_dssp SCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCC-EEEEEETTEECCGGGGTTSEEECTT-
T ss_pred CCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCC-eEEEEECCEECcCCCCcceEEeCCC-
Confidence 7764 557788888653221 112334456789999999999999887 9999999876543322112211111
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCCCCccc-eEEEEe
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVP-CVFHIV 192 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~-~~~~v~ 192 (207)
..|.|.+++.+|+|.|+|.|.|..|..... ..+.|.
T Consensus 164 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~ 200 (304)
T 2yd9_A 164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200 (304)
T ss_dssp SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEE
Confidence 258999999999999999999998865433 455554
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=156.81 Aligned_cols=175 Identities=17% Similarity=0.293 Sum_probs=121.5
Q ss_pred ecCCCcccCCCcEEEEeEeccCCC---CcEEEEEECC----------------ccccc---cccCCeEe-------cCCe
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHNN----------------KTLHH---NIAQGIIM-------TNQS 61 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~~----------------~~~~~---~~~~~~~~-------~~~~ 61 (207)
......+.+|+++.|.|.+.+.+. ...+.|++++ ..+.. ....+... .+.+
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 345567889999999999987652 1389999843 22221 00112222 2457
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCce
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSA 140 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~ 140 (207)
|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..+|....... ...+..|+.+.|.|.+ .+.|.+ .+.|++++..
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~-~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~~~~ 162 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFV-DGSEEIGNDFKLKCEPKEGSLPL-QFEWQKLSDS 162 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEE-ESCCBTTCCEEEEEECSBCCSSC-EEEEEECSTT
T ss_pred EEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeee-ecceecCCcEEEEecCCCCCCCC-EEEEEECCCC
Confidence 9999999999999999999876644 5577889988776543322 2235689999999999 777876 9999996543
Q ss_pred eeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 141 ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
........ .......|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 163 ~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 210 (214)
T 3jz7_A 163 QTMPTPWL---AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210 (214)
T ss_dssp CCCCGGGG---GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred CccCccce---eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 22221110 1112236999999999999999999999998755544443
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=154.51 Aligned_cols=178 Identities=14% Similarity=0.151 Sum_probs=122.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCC--cEEEEEECCccccccc----------------cCCeE-------ecCCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNI----------------AQGII-------MTNQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~~~~~----------------~~~~~-------~~~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+.+ ..+.|+|++..+.... ..+.. ..+.+|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 355678899999999999887654 2489999876543210 00011 1134699999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA 146 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~ 146 (207)
++.+|+|.|.|.+.+..+........+.+..++...........+..|..+.+.|.+.+.|+| .+.|++++..+....
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W~~~~~~~~~~~- 163 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTWDTEVKGTTSSR- 163 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEEEESSCCEEEEE-
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEEEECCcccccCc-
Confidence 999999999999987766544444444444443322222333344578899999999999987 999999987654321
Q ss_pred eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 147 QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 147 ~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
.....+. .+.|.|.+++.+|+|.|+|.|+|..|.....+.+.|-+
T Consensus 164 --~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 164 --SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp --EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred --eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 1122221 35699999999999999999999999887666555443
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=152.51 Aligned_cols=167 Identities=13% Similarity=0.125 Sum_probs=115.0
Q ss_pred cCCCcc-cCCCcEEEEeEeccCCCCcEEEEEECC-ccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 12 LNPDHI-KEDSDVYFDCDIVAVPPVYKVEWRHNN-KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v-~~g~~v~l~C~~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
+....+ .+|+++.|.|.+.|.|.+ .+.|++.. .++.. .......+..|.|.+++..|+|.|.|.+.|..+.. +.
T Consensus 7 p~~~~~~~~G~~v~L~C~~~g~P~p-~i~W~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~ 82 (202)
T 1vca_A 7 PESRYLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EK 82 (202)
T ss_dssp SSSEEEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCSS--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EE
T ss_pred CCCcEEEcCCCcEEEEEeecCCCCC-eEEEECCCCCCccc--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE-ee
Confidence 444434 489999999999998887 89999842 22211 00111123469999999999999999999876643 55
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccceeEEee---cCceEEEEEecC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVAQAHILR---SGTLSVVAYSPN 164 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~ 164 (207)
.+.|.|..+|..+...+. ..+.+|+.+.|.|.+.+.+++ +.|.|++++..+........... ......|.|...
T Consensus 83 ~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~ 161 (202)
T 1vca_A 83 GIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161 (202)
T ss_dssp EEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred EEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee
Confidence 778999877764433333 457799999999999986542 37999999876542210000000 111334677788
Q ss_pred CCCCCeEEEEEEecCCCCC
Q psy10918 165 SELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~ 183 (207)
..+|.|.|+|.|.|..+..
T Consensus 162 ~~d~~g~ytC~A~n~~~~~ 180 (202)
T 1vca_A 162 IEDIGKVLVCRAKLHIDEM 180 (202)
T ss_dssp GGGTTCEEEEEEEECSCCC
T ss_pred eccCCCeEEEEEEccccCC
Confidence 8889999999999998763
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-26 Score=161.61 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=125.3
Q ss_pred cccCCCcEEEEeEecc----------CCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVA----------VPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~----------~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+.+|+.+.|.|.+.+ .|.+ .+.|++++..+...........+. .|.|.+++..|+|.|+|.+.|..
T Consensus 109 ~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 187 (317)
T 2y25_A 109 IALSATDLKIQSTAEGIQLYSFVTYYVEDL-KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187 (317)
T ss_dssp HHTCBCCCEEEECSSEEEEEEEBSSCCSSC-EEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred ecccCCCeEEEeeccccEEEEEeccCCCCc-EEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCC
Confidence 3457888888888776 5666 999999999887543333323332 49999999999999999999876
Q ss_pred CCCccceEEEEEEe--------------------CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee
Q psy10918 84 GDGESNAFFLNVMY--------------------SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV 143 (207)
Q Consensus 84 ~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~ 143 (207)
+.. ...+.+.+.. .|.+....+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..
T Consensus 188 g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~ 265 (317)
T 2y25_A 188 TGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAS 265 (317)
T ss_dssp CEE-EEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCC-EEEEEESSSEECC
T ss_pred ceE-EEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCC-EEEEEECCEeCCC
Confidence 654 3344443321 11122222334567899999999999999987 9999999987643
Q ss_pred ccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 144 NVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 144 ~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
. ....+... +..+.|.|.+++.+|+|.|+|.|.|..|..+.++.+.|.
T Consensus 266 ~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 266 D-DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314 (317)
T ss_dssp C-SSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred C-CcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 2 22333333 556789999999999999999999999988777666665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=165.99 Aligned_cols=177 Identities=15% Similarity=0.216 Sum_probs=131.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeeeCCCCcc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNIEGDGES 88 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~~ 88 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|++++..+............++|.|.+++..|+| .|+|.+.|..|.. .
T Consensus 163 ~~~~~~~v~~G~~v~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~ 240 (347)
T 2ifg_A 163 VQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-E 240 (347)
T ss_dssp EECCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC-C
T ss_pred ccCCceEEeCCCcEEEEEEEecCCCC-EEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCE-E
Confidence 34567788999999999999998887 8999999876554332223334567999999999999 9999999887765 4
Q ss_pred ceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEee-----cCceEEEEEe
Q psy10918 89 NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILR-----SGTLSVVAYS 162 (207)
Q Consensus 89 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~-----~~~~~~l~i~ 162 (207)
..+.|.|..+|.+ .......|+.+.|.|.+.|.|.| .+.|+++|..+...... ..... ......|.|.
T Consensus 241 ~~~~l~V~~~P~i-----~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~ 314 (347)
T 2ifg_A 241 VSVQVNVSFPASV-----QLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314 (347)
T ss_dssp EEECCCCBEEEEE-----EECCCEESSSEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEES
T ss_pred EEEEEEEcCCCee-----eeccCccCceEEEEEEeeecCCC-cEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEEC
Confidence 4666777766654 11234578999999999999887 99999998775522111 11111 1124569999
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEeeccc
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVT 196 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~ 196 (207)
+++.+|+|.|+|.|.|..|..+.+ +.+.+.++
T Consensus 315 ~v~~~d~G~Y~C~a~N~~G~~~~~--~~l~V~~~ 346 (347)
T 2ifg_A 315 QPTHVNNGNYTLLAANPFGQASAS--IMAAFMDN 346 (347)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEE--EEECSCCC
T ss_pred CCCcccCceEEEEEecCCCceeeE--EEEEecCC
Confidence 999999999999999999987555 44444443
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=153.17 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=123.4
Q ss_pred cCCCcccCCCcEEEEeE-eccCCC-CcEEEEEECCccccccccC--CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 12 LNPDHIKEDSDVYFDCD-IVAVPP-VYKVEWRHNNKTLHHNIAQ--GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~-~~~~~~-~~~i~W~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
.....+.+|+++.|.|. +.+.+. + .+.|++++..+...... .....+.+|.|.+++.+|+|.|+|.+.+..+...
T Consensus 15 ~~~~~v~~G~~v~L~C~~~~~~p~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~ 93 (201)
T 3s97_C 15 RPEVRVKEGKGMVLLCDPPYHFPDDL-SYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS 93 (201)
T ss_dssp CCCEEEETTCCEEECCCCCSEESSCC-EEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred CceEEEECCCCEEEeccccccCCCce-EEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence 45667899999999999 777777 6 99999999887532222 2223457899999999999999999998664432
Q ss_pred c--ceEEEEEEe-------CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEE
Q psy10918 88 S--NAFFLNVMY-------SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSV 158 (207)
Q Consensus 88 ~--~~~~l~v~~-------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 158 (207)
. ..+.+.+.. +|.+.... ....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ...... ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~---~~~~~~--~~~ 166 (201)
T 3s97_C 94 VFSKFIPLIPIPERTTKPYPADIVVQF-KDVYALMGQNVTLECFALGNPVP-DIRWRKVLEPMPST---AEISTS--GAV 166 (201)
T ss_dssp EECCCEEEEEECCSSCCCEEEEEEEEC-CCEEEETTCCEEEEEEEEEESCC-EEEEEETTBCCCTT---CEEETT--TTE
T ss_pred hhhcccceeeccccccCCCCCceEecC-CceEEecCCcEEEEEEccCCCCC-ceEEEeCCCcCCCc---eeecCC--CCE
Confidence 2 233333331 22222111 23456789999999999999887 99999998754321 222222 236
Q ss_pred EEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 167 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 199 (201)
T 3s97_C 167 LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199 (201)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEccCChhhCEEEEEEEEecCCceeeeEEEEE
Confidence 999999999999999999999998866655554
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=153.37 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=116.3
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCC--eEEEEecCCCCCeeeEEEEeeeCCC-Cccce
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGD-GESNA 90 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~ 90 (207)
..+.+|++++|.|.+.+ +.+ .+.|+|++..+...... .....+. .|.|.+++..|+|.|.|.+.|..+. ..+..
T Consensus 18 ~~v~~G~~vtL~C~~~~-~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~ 95 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIR-EAY-LTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT 95 (218)
T ss_dssp SEEETTCCEEEEECCCT-TCS-EEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred CccCCCCCEEEEEEcCC-CCC-EEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCC
Confidence 46889999999999876 445 99999998876532111 0112234 8999999999999999999986542 22445
Q ss_pred EEEEEEeC---CcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCC
Q psy10918 91 FFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 91 ~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 167 (207)
+.|.|... |.+. ..+ ...+.+|+.++|.|...+.+.+ .+.|+++|..+... .. .......|.|.+++.+
T Consensus 96 ~~l~V~~~~~~P~i~-~~p-~~~v~~G~~v~L~C~~~~~~~~-~~~W~k~g~~~~~~----~~-~~~~~~~L~I~~v~~~ 167 (218)
T 1uct_A 96 LELVVTGLYGKPFLS-ADR-GLVLMPGENISLTCSSAHIPFD-RFSLAKEGELSLPQ----HQ-SGEHPANFSLGPVDLN 167 (218)
T ss_dssp EEEEEECSSCCCEEE-ESS-CSEECTTCCCEEEEECSSSCCS-EEEEEETTCSSCCS----EE-ECSSSEEEECCSCCGG
T ss_pred EEEEEcCcccCCEEE-eCC-CCccCCCCCEEEEEeCCCCCCC-EEEEEECCCccccc----cc-CCCccCEEEEccCCcc
Confidence 67777752 2222 122 2356799999999977666665 99999998765321 11 2233457999999999
Q ss_pred CCeEEEEEEecCCC---CCccceEEEEeecccC
Q psy10918 168 DYGTLICWGSNKIG---HQRVPCVFHIVSAVTF 197 (207)
Q Consensus 168 ~~g~y~C~~~n~~g---~~~~~~~~~v~~~~~~ 197 (207)
|+|.|+|.|.|... ....+..+.|.+.+.+
T Consensus 168 D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 168 VSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp GCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred cCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 99999999998642 1223344555555543
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=157.73 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=127.0
Q ss_pred CcccCCCcEEEEeEeccCC-CCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeee--CCCCc---c
Q psy10918 15 DHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI--EGDGE---S 88 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~--~~~~~---~ 88 (207)
..+.+|+++.|.|.+.+.| .+ .+.|++++..+.... ..+...+..|.|.+++.+|+|.|+|.+.|. .+... +
T Consensus 138 ~~~~~G~~v~L~C~~~g~p~~~-~i~W~k~~~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s 215 (329)
T 3oq3_B 138 LGTHDKYGIDLYCGILYAKHYN-NITWYKNNQELIIDG-TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215 (329)
T ss_dssp TTSSTTTCEEEECCCCSCCCCC-EEEEEETTEECCCSS-SSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEE
T ss_pred eEEeCCCcEEEEeccCCCCCCc-eEEEEECCccCCCCC-ceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEE
Confidence 3456799999999999988 66 999999999885432 334344789999999999999999999987 54332 2
Q ss_pred ceEEEEEEeCCcc--cCCCCceeeeeeCCcEEEEEEeccCC--CCc-eEEEEEcCceeeeccceeEEe--ecC--ceEEE
Q psy10918 89 NAFFLNVMYSPTC--KPHQQRVLGVARQEKVNISCEVDANP--PDV-KFSWTFNNSAETVNVAQAHIL--RSG--TLSVV 159 (207)
Q Consensus 89 ~~~~l~v~~~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~-~~~W~~~~~~~~~~~~~~~~~--~~~--~~~~l 159 (207)
..+.|.|..++.. +...+....+..|+.+.|.|.+.+.| +++ .+.|++++..+.......... ..+ ....|
T Consensus 216 ~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L 295 (329)
T 3oq3_B 216 RCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295 (329)
T ss_dssp EEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEE
T ss_pred eeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEE
Confidence 2366778766521 11134445678999999999999998 344 899999987632221111111 112 34679
Q ss_pred EEecCCCCCCe-EEEEEEecCCCCCccceEEEE
Q psy10918 160 AYSPNSELDYG-TLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 160 ~i~~~~~~~~g-~y~C~~~n~~g~~~~~~~~~v 191 (207)
.|.+++.+|+| .|+|.|.|..|....++.+.|
T Consensus 296 ~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 99999999999 999999999998866655443
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=164.33 Aligned_cols=175 Identities=20% Similarity=0.312 Sum_probs=127.5
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+.+|+++.|.|.+.+.|.+ .+.|++++..+...... .......+|.|.+++..|+|.|+|.+.|..+.. ...+
T Consensus 133 ~~v~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~ 210 (334)
T 1ry7_B 133 LAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTY 210 (334)
T ss_dssp EEEETTCCEEEECCCCCSSCC-EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEE
T ss_pred EEecCCCcEEEEEEccCCCCC-eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEE
Confidence 456789999999999988877 99999999887654322 112234579999999999999999999887654 4567
Q ss_pred EEEEEeCC----cccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEE----cCceeeeccce-eEEee-------cCc
Q psy10918 92 FLNVMYSP----TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF----NNSAETVNVAQ-AHILR-------SGT 155 (207)
Q Consensus 92 ~l~v~~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~----~~~~~~~~~~~-~~~~~-------~~~ 155 (207)
.|.|...+ .+....+....+..|+.+.|.|.+.+.|.+ .+.|++ ++..+...... ..+.. +..
T Consensus 211 ~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (334)
T 1ry7_B 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE 289 (334)
T ss_dssp EEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE-EEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTT
T ss_pred EEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC-eEEEEECCcCCCccccCCCCeeEEEeecCcccccccc
Confidence 78887532 222222344567899999999999998887 999999 55543322110 01111 112
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
...|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 290 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 326 (334)
T 1ry7_B 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326 (334)
T ss_dssp CCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred ccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence 2369999999999999999999999988777666555
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=160.31 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=123.5
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC--CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ--GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...... .....++.|.|.+++..|+|.|+|.+.|..|...+
T Consensus 114 ~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 192 (304)
T 2yd9_A 114 GPQLKVVERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192 (304)
T ss_dssp CCCCEEEETTSCEEECCEEECSSCC-EEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred CCccEEEeCCCeEEEEEECccCCCC-eEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEe
Confidence 3455667889999999999998887 99999999887653221 22344568999999999999999999998776544
Q ss_pred ceEEEEEE---eCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC
Q psy10918 89 NAFFLNVM---YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS 165 (207)
Q Consensus 89 ~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 165 (207)
....+.|. .+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .......|.+.++
T Consensus 193 ~~~~l~v~~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~l~~~~~-----~~~~~~~L~i~~~- 264 (304)
T 2yd9_A 193 SPANLYVRVQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMP-YVKWMQGAEDLTPEDD-----MPVGRNVLELTDV- 264 (304)
T ss_dssp CCEEEEEECCCEEEEEEE-CCCCBCCCTTCCEEEEEEEEEESCC-EEEEEETTEECSCSSS-----CCBSEEEEEECSC-
T ss_pred ccEEEEEEeeccCCcEEe-cCCceEEcCCCeEEEEEEEeeeCCC-EEEEEECCEECCCccc-----ccCCcEEEEEccc-
Confidence 33455554 2333322 2333456789999999999999987 9999999876543211 1122334666555
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|+|.|+|.|.|..|....++.+.|.
T Consensus 265 -~d~G~Y~C~a~N~~G~~~~~~~l~V~ 290 (304)
T 2yd9_A 265 -KDSANYTCVAMSSLGVIEAVAQITVK 290 (304)
T ss_dssp -CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred -ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence 68999999999999988666554443
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=152.07 Aligned_cols=188 Identities=11% Similarity=0.122 Sum_probs=116.5
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCC--cEEEEEECCcccc-----------ccc----cCCeE-------ecCC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLH-----------HNI----AQGII-------MTNQ 60 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~~-----------~~~----~~~~~-------~~~~ 60 (207)
++++..+..+..+.+|++++|.|.+.+.+.+ ..+.|+|++.... ... ..+.. ..+.
T Consensus 4 Qf~V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~ 83 (226)
T 4f80_A 4 QFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKA 83 (226)
T ss_dssp CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEE
T ss_pred eEEEECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeE
Confidence 3344445566778899999999998764432 3799999764321 100 00111 1124
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCc
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNS 139 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~ 139 (207)
+|.|.+++..|+|.|.|.+.|..+.. ...+.+...+.... ......+..|..+.|.|.+.+. |+| .+.|+++++
T Consensus 84 ~L~I~~v~~~D~G~Y~C~a~n~~~~~---~~~v~~~~~~~~~~-~~~~~~~~~g~~v~l~c~~~g~~P~p-~i~W~k~~~ 158 (226)
T 4f80_A 84 ALRIHNVTASDSGKYLCYFQDGDFYE---KALVELKVAALGSD-LHVDVKGYKDGGIHLECRSTGWYPQP-QIQWSNNKG 158 (226)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEE---EEEEEEEEEBCCCC-CEEEEEEEETTEEEEEEEEEEEBSCC-EEEEECTTS
T ss_pred EEEEeeCchHHCeeEEEEEECCCcEE---EEEEEEeeccceec-ccceeeeccCCceeeEEEeccCCCCC-EEEEEECCc
Confidence 69999999999999999999866543 23344443333222 2333456789999999999985 666 999999665
Q ss_pred eeeeccce-eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCC
Q psy10918 140 AETVNVAQ-AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHP 199 (207)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~ 199 (207)
........ .....++....+.+..++.+|+|.|+|.|+|..|...+.+ .|.+.+|..+
T Consensus 159 ~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~--~v~v~ep~~~ 217 (226)
T 4f80_A 159 ENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTA--SISIADPFFR 217 (226)
T ss_dssp CBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEE--EECCCTTTC-
T ss_pred eEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEE--EEEECCCCCC
Confidence 43222211 2222333444555667788999999999999999886664 4455555443
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=146.09 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=115.0
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
|...|... +.. .+.+|++++|.|.+.+.+ . .+.|+|++..+...... .....+..|.|.+++..|+|.|.|.+.
T Consensus 3 ~~P~i~~~--p~~-~v~~G~~v~L~C~~~~~~-~-~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 77 (188)
T 1oll_A 3 PKPFIWAE--PHF-MVPKEKQVTICCQGNYGA-V-EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR 77 (188)
T ss_dssp CCCEEEEE--SCS-EEETTCCEEEEEECCTTC-C-EEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEee--cCC-cCCCCCCEEEEEecCCCC-C-EEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEec
Confidence 44444433 333 688999999999987543 3 89999999876521111 112234679999999999999999998
Q ss_pred eeCCC-CccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCce
Q psy10918 81 NIEGD-GESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156 (207)
Q Consensus 81 ~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
+..+. ..+..+.|.|.. +|.+. ..+ ...+.+|+.++|.|.+.+. ++ .+.|++++..+... .......
T Consensus 78 ~~~~~~~~s~~~~l~V~~~~~~p~i~-~~p-~~~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~-----~~~~~~~ 148 (188)
T 1oll_A 78 VGELWSEPSNLLDLVVTEMYDTPTLS-VHP-GPEVISGEKVTFYCRLDTA-TS-MFLLLKEGRSSHVQ-----RGYGKVQ 148 (188)
T ss_dssp ETTEECCCCCCEEEEEESCSCCCEEE-EES-CSEEETTCEEEEEEECSSS-CS-EEEEEEESSSCEEE-----EEECSSE
T ss_pred CCCCCCCCCCceEEEecccCCCCeEE-ECC-CCccccCCEEEEEEEcCCC-CC-EEEEEECCcccccc-----ccCCCce
Confidence 75432 235567777764 23322 122 2346799999999998764 44 99999998765431 1123445
Q ss_pred EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..|.|.+++.+|+|.|+|.|.|..
T Consensus 149 ~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 149 AEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp EEEEEEECCGGGCEEEEEECEEET
T ss_pred eEEEECCCCcCCCcEEEEEEEcCC
Confidence 679999999999999999999864
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=166.06 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=120.1
Q ss_pred CCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC--------CeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 14 PDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ--------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
...+.+|+++.|.|.+.+ .+.+ .+.|++++..+...... .......+|.|.+++.+|+|.|.|.+.|.
T Consensus 236 ~~~v~~G~~v~L~C~~~g~~p~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-- 312 (423)
T 3qs7_E 236 QLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-- 312 (423)
T ss_dssp EEEEETTSCEEEEEEEEESSSCC-CEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE--
T ss_pred ceEEeCCCeEEEEEEEEcCCCCc-EEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC--
Confidence 456788999999999998 5555 99999999887543111 11222346999999999999999999987
Q ss_pred CCccceEEEEEEeCCcccCCC-CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 85 DGESNAFFLNVMYSPTCKPHQ-QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
....+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.| .+.|+++|..+..... . ..... .+....
T Consensus 313 --~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~---~-~~~~~-~~~~~~ 384 (423)
T 3qs7_E 313 --PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQK---G-LDNGY-SISKFC 384 (423)
T ss_dssp --EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC-EEEEEETTEEEECBCC---B-CSSSS-EEEEEC
T ss_pred --CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC-eEEEEECCEECCCccc---c-ccCCc-EEEEEe
Confidence 3567788888777543222 123456789999999999999997 9999999987643210 0 00111 122245
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCC
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFN 202 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~ 202 (207)
...+|+|.|+|.|.|..|..+. .+.|.+.+.|++|..
T Consensus 385 ~~~~D~G~YtC~A~N~~G~~~~--s~~L~v~~~p~~~~~ 421 (423)
T 3qs7_E 385 NHKHQPGEYIFHAENDDAQFTK--MFTLNIRSGTKHHHH 421 (423)
T ss_dssp CCTTCCSCEEEEEEETTEEEEE--EEEEC----------
T ss_pred cccccCEEEEEEEEcCCceEEE--EEEEEEecCCccccc
Confidence 6778999999999999998754 477777788887754
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-25 Score=169.63 Aligned_cols=170 Identities=21% Similarity=0.342 Sum_probs=134.3
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
.+..|+.+.|.|.+.+.+ + .+.|++++..+...........+..|.|.+++..|+|.|.|.+.|..|...+..+.|.|
T Consensus 300 ~~~~g~~v~l~C~~~~~p-~-~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 377 (642)
T 1e07_A 300 PVEDEDAVALTCEPEIQN-T-TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377 (642)
T ss_pred eEecCCcEEEEEECCCCC-c-cEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEE
Confidence 344477799999998876 4 89999999888654433333456789999999999999999999998876666788999
Q ss_pred EeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 96 MYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
..+|..+...+....+..|+.+.|.|.+.+.|++ .+.|+++|..+. ....|.|.++..+|+|.|+|.
T Consensus 378 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~~~------------~~~~L~i~~~~~~d~G~Y~C~ 444 (642)
T 1e07_A 378 LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA-QYSWLIDGNIQQ------------HTQELFISNITEKNSGLYTCQ 444 (642)
T ss_pred EcCCCCCeecCCceEecCCCcEEEEEEcCccCCC-eEEEEECCEEcC------------CCceEEEccCChhhCeEEEEE
Confidence 8877655444555567799999999999999987 999999986532 123488999999999999999
Q ss_pred EecCCCCCccceEEEEeecccCCCC
Q psy10918 176 GSNKIGHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 176 ~~n~~g~~~~~~~~~v~~~~~~~~p 200 (207)
|.|..|....+..+.|.+.+++.+|
T Consensus 445 a~n~~g~~~~s~~~~v~v~~~~~~p 469 (642)
T 1e07_A 445 ANNSASGHSRTTVKTITVSAELPKP 469 (642)
T ss_pred EEcCCCCCcccceEEEEEeccCCCc
Confidence 9999988777766666666544333
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=164.76 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=127.6
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc----ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
...+.+|+++.|.|.+.+.|.+ .+.|++++..+... ........+..|.|.+++..|+|.|+|.+.|..|.. +.
T Consensus 221 ~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~ 298 (388)
T 2v5m_A 221 PLELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SV 298 (388)
T ss_dssp CEEEETTSCEEECCCCEEESCC-EEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred ceEEeeCCcEEEEEECCCCCCC-EEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCce-eE
Confidence 3457789999999999988887 99999986543211 112333456789999999999999999999988865 55
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+.. ....|.|.++..+|+
T Consensus 299 ~~~l~V~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~i~~-----------~~~~L~i~~v~~~d~ 365 (388)
T 2v5m_A 299 ETVLTVTAPLSAKI-DPPTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGH-----------SESVLRIESVKKEDK 365 (388)
T ss_dssp EEEEEEEEEEEEEE-ESSEEEECTTSCEEEEEEEEEECCC-EEEEEETTEECSC-----------CSSEEEESSCCGGGC
T ss_pred EEEEEEeCCCcccc-CCCcEEecCCCCEEEEEEeccccCC-eEEEEECCEECcc-----------CCCEEEEecCChhhC
Confidence 77788887665433 3344567799999999999999987 9999999876431 123699999999999
Q ss_pred eEEEEEEecCCCCCccceEEEE
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.|+|.|.|..|....++.|.|
T Consensus 366 G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 366 GMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEEEe
Confidence 9999999999998876655543
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=158.70 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=126.7
Q ss_pred CcccCCCcEEEEeEe------ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe-eeCCCCc
Q psy10918 15 DHIKEDSDVYFDCDI------VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF-NIEGDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~------~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~-~~~~~~~ 87 (207)
..+..|+++.|.|.+ .+.|.+ .+.|++++..+.... ......+..|.|.+++..|+|.|+|.+. +..|...
T Consensus 113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~-~i~W~k~~~~l~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~ 190 (315)
T 1itb_B 113 QKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKPLLLDN-IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190 (315)
T ss_dssp EEEETTSCEEEECSSCTTTCTTTTCCC-CCEEEETTEECCCCS-SSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred eEEecCCCeEEEEecccccccCCCCCC-EEEEEECCEECCCcc-ceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEE
Confidence 356789999999998 777877 999999999886532 3445567799999999999999999999 6766553
Q ss_pred c--ceEEEEEE-----eCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce---eEEeecC---
Q psy10918 88 S--NAFFLNVM-----YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ---AHILRSG--- 154 (207)
Q Consensus 88 ~--~~~~l~v~-----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~--- 154 (207)
. ..+.+.+. .+|.+.........+..|+.+.|.|.+.+.|.| .+.|+++|..+...... .......
T Consensus 191 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~ 269 (315)
T 1itb_B 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYSVENPAN 269 (315)
T ss_dssp EEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS-EEEEEETTEECCTTCSSEEEEEEEECCSSC
T ss_pred EEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC-eeEEEECCEECCcccccccccceeeeccCC
Confidence 2 23334333 334443322223456799999999999999987 99999998765432210 1111111
Q ss_pred -----ceEEEEEecCCCCC-CeEEEEEEecCCCCCccceEEEE
Q psy10918 155 -----TLSVVAYSPNSELD-YGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 155 -----~~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
..+.|.|.+++.+| +|.|+|.|.|..|....++.|.|
T Consensus 270 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v 312 (315)
T 1itb_B 270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312 (315)
T ss_dssp GGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred CceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence 23479999999999 99999999999998876655544
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=151.27 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=115.1
Q ss_pred ecCCCcccCCCcEEEEeEeccCCC----CcEEEEEECCccccc---------c----ccCCeEe-------cCCeEEEEe
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPP----VYKVEWRHNNKTLHH---------N----IAQGIIM-------TNQSLVLQR 66 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~----~~~i~W~~~~~~~~~---------~----~~~~~~~-------~~~~l~i~~ 66 (207)
+.....+.+|+++.|.|.+.+.+. ...+.|++++..+.. . ...+... .+.+|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 345556788999999999866542 238999997532211 0 0011111 123799999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA 146 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~ 146 (207)
++.+|+|.|.|.+.+ .+. ....+.|.|..++..+.... ...+..|+.+.|.|.+.|.|.+ .+.|++++........
T Consensus 87 v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~-~~~~~~g~~v~L~C~~~g~P~p-~i~W~~~~g~~~~~~~ 162 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRI-LVVDPVTSEHELTCQAEGYPKA-EVIWTSSDHQVLSGKT 162 (222)
T ss_dssp CCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEE-EEEETTTTEEEEEEEEEEBSCC-EEEEEETTCCEECCEE
T ss_pred cccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCcee-eeeecCCCcEEEEEEecCCCCC-eEEEEECCCceecCcc
Confidence 999999999999987 333 35567788886554332111 1134678999999999998887 9999998433221111
Q ss_pred eeEEe--ecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCC
Q psy10918 147 QAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201 (207)
Q Consensus 147 ~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~ 201 (207)
..... .++.........+...|.|.|+|.|.|..|.....+.+.|.......||.
T Consensus 163 ~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~p~ 219 (222)
T 3sbw_C 163 TTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219 (222)
T ss_dssp EEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-------
T ss_pred ceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcccCCCC
Confidence 11111 12222233333456789999999999999988777666655444444444
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=155.23 Aligned_cols=175 Identities=14% Similarity=0.178 Sum_probs=119.0
Q ss_pred eeeeeecCCCcccCCCcEEEEeEecc---CCCCcEEEEEECCcccc----------------------------ccccCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVA---VPPVYKVEWRHNNKTLH----------------------------HNIAQG 54 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~~i~W~~~~~~~~----------------------------~~~~~~ 54 (207)
+.+..+.....+.+|++++|.|.+.+ .+.+ .+.|++++.... .....+
T Consensus 3 ~~v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 81 (250)
T 2fbo_J 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPP-VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGR 81 (250)
T ss_dssp EEEECSCSEEEECTTSCEEECCEEEECSCCSCC-EEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTT
T ss_pred EEEEcCCCceEEecCCeEEEEEEeEcCCCCCce-EEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCce
Confidence 34445566778899999999999876 6666 899999875431 000111
Q ss_pred eEec---CCeEEEEecCCCCCeeeEEEEeeeCCCCc----cceEEEEEEeCC--ccc-CCCCceeeeeeCCcEEEEEEec
Q psy10918 55 IIMT---NQSLVLQRVNRQSAGNYTCVGFNIEGDGE----SNAFFLNVMYSP--TCK-PHQQRVLGVARQEKVNISCEVD 124 (207)
Q Consensus 55 ~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~----~~~~~l~v~~~~--~~~-~~~~~~~~~~~g~~~~l~C~~~ 124 (207)
.... +.+|.|.+++.+|+|.|.|.+.+..+... ...+.|.|..++ ... ...+....+.+|+.+.|.|.+.
T Consensus 82 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~ 161 (250)
T 2fbo_J 82 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161 (250)
T ss_dssp EECSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEE
T ss_pred EEeccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEec
Confidence 1111 24799999999999999999998766432 235667776542 222 1123334456799999999999
Q ss_pred cCCCCceEEEEEcCceeeeccce---------------------eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 125 ANPPDVKFSWTFNNSAETVNVAQ---------------------AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 125 ~~~~~~~~~W~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.| .+.|++++..+...... ...... ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 162 g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 162 DCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp SCTTC-EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred CCCCC-eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCCcccc
Confidence 99988 99999987654321100 000000 11469999999999999999999966643
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=155.38 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=124.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-CcEEEEE-ECCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeeeCCCCcc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-VYKVEWR-HNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNIEGDGES 88 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~~ 88 (207)
.....+.+|+++.|.|.+.+ |. + .+.|+ +++..+... .......+..|.|.+++..|+| .|+|.+.|..+...+
T Consensus 98 ~~~~~~~~g~~v~l~C~~~~-p~~~-~v~W~~~~g~~l~~~-~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s 174 (290)
T 2o26_X 98 GLPLFGKEDSDALVRCPLTD-PQVS-QYSLIECDGKSLPTD-LTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS 174 (290)
T ss_dssp CCCEEEETTSCEEECCCBSC-CSCE-EEEEEETTSCCCCTT-CEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEEC
T ss_pred ccceEEecCCeEEEeCcCCC-CCCc-eEEEEeCCCcCCCCC-CceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEe
Confidence 34456778999999999985 55 5 99995 677776543 2222344578999999999999 999999987554445
Q ss_pred ceEEEEEE----eCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCcee----eeccceeEEe---ecCceE
Q psy10918 89 NAFFLNVM----YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE----TVNVAQAHIL---RSGTLS 157 (207)
Q Consensus 89 ~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~---~~~~~~ 157 (207)
..+.|.|. .+|.+.. .+....+..|+.+.|.|.+.+.|.+..+.|++++..+ ..... .... ......
T Consensus 175 ~~~~l~V~~~~~~~P~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 252 (290)
T 2o26_X 175 DKFTLKVREAIKAIPVVSV-PETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN-SWHRGDFNYERQE 252 (290)
T ss_dssp CCEEEEEECCCCSCCEEEC-SCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECC-EEEEETTEEEEEE
T ss_pred EEEEEEEEeCCCCCCcccc-CCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccc-ccccCceeeEEEE
Confidence 56778887 3444432 2333367799999999999999887459999998763 22111 1111 112345
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
.|.|.++..+|+|.|+|.|.|..|..+..+.+.
T Consensus 253 ~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~ 285 (290)
T 2o26_X 253 TLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285 (290)
T ss_dssp EEEESSCCSSSCEEEEEEEECSSCEEEEEEEEC
T ss_pred EEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEE
Confidence 799999999999999999999999885554443
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=169.30 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=132.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccc--cccccCC-----eEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL--HHNIAQG-----IIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~--~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+....+.+|+++.|.|.+.+.+.+..+.|++++..+ ....... .......|.|.+++.+|+|.|.|.+.|..|
T Consensus 218 ~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 297 (524)
T 2ec8_A 218 KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297 (524)
T ss_dssp CSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred CCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCC
Confidence 444568899999999999988877459999999873 3211111 123346799999999999999999999887
Q ss_pred CCccceEEEEEEeCCcccCCC--CceeeeeeCCcEEEEEEeccCCCCce-EEEEEcCceeeeccceeEEeecC----ceE
Q psy10918 85 DGESNAFFLNVMYSPTCKPHQ--QRVLGVARQEKVNISCEVDANPPDVK-FSWTFNNSAETVNVAQAHILRSG----TLS 157 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~----~~~ 157 (207)
.. ...+.|.|..+|.+.... .....+..|+.+.|.|.+.+.|.+ . +.|++++..+............+ ...
T Consensus 298 ~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p-~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~ 375 (524)
T 2ec8_A 298 SA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKP-EHQQWIYMNRTFTDKWEDYPKSENESNIRYVS 375 (524)
T ss_dssp EE-EEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCC-CEEEEESSSCBCSSSBCCEESCCSSSCCEEEE
T ss_pred ce-EEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCC-cEEEEEECCeeccCCccceeEEccCCCceeEE
Confidence 76 347788898777654322 234567899999999999999987 6 99999987754332222222222 246
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|.|.++..+|+|.|+|.|.|..|..+.++.+.|.
T Consensus 376 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 410 (524)
T 2ec8_A 376 ELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN 410 (524)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe
Confidence 79999999999999999999999987666555544
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=148.49 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=116.5
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCC-CCccceEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG-DGESNAFFL 93 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~-~~~~~~~~l 93 (207)
.+.+|++|+|.|.+.+.+ . .+.|+|++..+...... .....+..|.|.+++..|+|.|+|.+.+..+ ...+..+.|
T Consensus 17 ~v~~G~~VtL~C~~~~~~-~-~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L 94 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNYGA-V-EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 94 (242)
T ss_dssp EEETTCCEEEEEECCTTC-C-EEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred ccCCCCcEEEEEeeCCCC-c-EEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEE
Confidence 788999999999986533 3 89999999766421111 1112345799999999999999999976533 233556777
Q ss_pred EEEe---CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe
Q psy10918 94 NVMY---SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 94 ~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
.|.. +|.+. ..+ ...+.+|+.++|.|.+.+. .+ .+.|+++|..+.. ..........|.|.+++.+|+|
T Consensus 95 ~V~~~~~~P~i~-~~p-~~~v~~G~~vtL~C~~~~~-~~-~~~w~k~g~~~~~-----~~~~~~~~~~l~I~~v~~~d~G 165 (242)
T 1p6f_A 95 VVTEMYDTPTLS-VHP-GPEVISGEKVTFYCRLDTA-TS-MFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRG 165 (242)
T ss_dssp EEECCSCCCEEE-EES-CSEEETTCEEEEEEECTTS-CS-EEEEEECSSSCEE-----EEEECSSEEEEEEEECCGGGCE
T ss_pred EeecccCCCceE-ccC-CCccCCCCcEEEEEecCCC-CC-EEEEEECCCccCc-----cccCCCceEEEEeCCCccccCE
Confidence 7774 23222 122 2346799999999998764 34 9999999876543 1122344567999999999999
Q ss_pred EEEEEEecCC-CCCccceEEEEeecccCCCC
Q psy10918 171 TLICWGSNKI-GHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 171 ~y~C~~~n~~-g~~~~~~~~~v~~~~~~~~p 200 (207)
.|+|.+.|.. .....+..+.|.+.+++..|
T Consensus 166 ~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 166 TYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp EEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred EEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 9999999864 11223444555555554433
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=162.15 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=128.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEec-------cCCCCcEEEEEECCccc--cccccCCeEecCCeEEEEecCCCCCeeeEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIV-------AVPPVYKVEWRHNNKTL--HHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~-------~~~~~~~i~W~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 77 (207)
.+...+....+.+|+++.|.|.+. +.+.+ .+.|++++..+ ......++...+++|.|.+++..|+|.|.|
T Consensus 20 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 98 (339)
T 3o4o_C 20 FRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC 98 (339)
T ss_dssp EEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCC-BCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEEC
T ss_pred hhCcCceEEEEECCccEEEEeccccccccccCCCCc-eEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEE
Confidence 455566788899999999999997 77776 99999999874 333234555667899999999999999999
Q ss_pred EEeeeCCCCccceEEEEEEeCCcccC-CCCceeeeeeCCcEEEEEE-----eccCCCCceEEEEEcCceeeeccceeEEe
Q psy10918 78 VGFNIEGDGESNAFFLNVMYSPTCKP-HQQRVLGVARQEKVNISCE-----VDANPPDVKFSWTFNNSAETVNVAQAHIL 151 (207)
Q Consensus 78 ~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 151 (207)
.+.|..+.. ...+.|.|...+.... .......+..|+.+.|.|. +.+.|.+ .+.|++++..+.........
T Consensus 99 ~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~-~v~W~k~g~~~~~~~~~~~~- 175 (339)
T 3o4o_C 99 TTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV-KIQWYKDSLLLDKDNEKFLS- 175 (339)
T ss_dssp CEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC-CBCCEESSCBCCTTCSSEEE-
T ss_pred EEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc-eEEEecCCeeCCCCCceeEE-
Confidence 999876644 5567788886654321 1112235678999999999 6777777 99999998775433222222
Q ss_pred ecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 152 RSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 152 ~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 176 -~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 205 (339)
T 3o4o_C 176 -VRGTTHLLVHDVALEDAGYYRCVLTFAHEG 205 (339)
T ss_dssp -CTTSSEEEESSCCGGGCEEEEEEEECCBTT
T ss_pred -cCCcceEEEcccCHhhCeEEEEEEEECCCC
Confidence 222246999999999999999999998874
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=143.32 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=107.9
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC-CccceEEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD-GESNAFFLN 94 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~~l~ 94 (207)
.+.+|++++|.|.+.+ +.+ .+.|+|++.. ....+..|.|.+++..|+|.|+|.+.|..+. ..+..+.|.
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 87 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVD-LYRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELV 87 (184)
T ss_dssp EEETTCCEEEEEECST-TCS-EEEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred cccCCCcEEEEEeCCC-CCC-EEEEEECCcc--------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEE
Confidence 7889999999999877 555 9999999865 2244678999999999999999999986652 334566777
Q ss_pred EEeC---CcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 95 VMYS---PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 95 v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
|... |.+. ..+ ...+.+|+.+.|.|.+.+.+ + .+.|++++..+..... .......|.|.+++.+|+|.
T Consensus 88 V~~~~~~p~i~-~~p-~~~v~~G~~v~l~C~~~~~~-~-~~~w~k~g~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~ 158 (184)
T 2gi7_A 88 ATGVFAKPSLS-AQP-GPAVSSGGDVTLQCQTRYGF-D-QFALYKEGDPAPYKNP-----ERWYRASFPIITVTAAHSGT 158 (184)
T ss_dssp EESSSCCCEEE-EEC-CCSSCCTTCEEEEEECSSCC-C-EEEEEECCCCTTSCCC-----CEEEEESSSEEEETTCCSEE
T ss_pred ecCcCCCCEEE-eCC-CceecCCCcEEEEEEcCCCC-c-EEEEEECCCcCcceec-----CCCceEEEEEccCCccCCeE
Confidence 7542 2221 112 22456899999999987654 4 9999999876432110 11123347888999999999
Q ss_pred EEEEEecCCC
Q psy10918 172 LICWGSNKIG 181 (207)
Q Consensus 172 y~C~~~n~~g 181 (207)
|+|.|.|..+
T Consensus 159 Y~C~a~n~~~ 168 (184)
T 2gi7_A 159 YRCYSFSSRD 168 (184)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEEeCCC
Confidence 9999999764
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=153.77 Aligned_cols=185 Identities=16% Similarity=0.278 Sum_probs=130.1
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeee
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+.+...+....+.+|+++.|.|.+.+.+ + .+.|++ ++..+...........+ ..|.|.+++..|+|.|+|.+.+.
T Consensus 5 p~v~~~~~~~~v~~G~~v~l~C~~~~~p-~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~ 82 (291)
T 2wim_A 5 LQVTISLSKVELSVGESKFFTCTAIGEP-E-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82 (291)
T ss_dssp CEEEESCSEEEEETTCCEEEEEEEESCC-S-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred ceEEEeccceEecCCCcEEEEEEEeCCC-C-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecc
Confidence 3444556777899999999999998876 3 899999 66666543322222222 37999999999999999999988
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEE
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAY 161 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i 161 (207)
.+......+.|.|..++.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .......++ .|.|
T Consensus 83 ~g~~~~~~~~l~v~~~~~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i 157 (291)
T 2wim_A 83 KGQTQEATVVLEIYQKLTFRE-VVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANN---NLQI 157 (291)
T ss_dssp SSCEEEEEEEEEEECCCBCCS-CCCSEEEETTSCEEECCCCBCSSCC-EEEEECC----CBCCCSSEEECTTS---CEEE
T ss_pred cCceEEEEEEEEecCCcceEe-CCCChhhcCCCCEEEEEEEccCCCC-EEEEEECCccccccCCceEEEccCC---CEEE
Confidence 776655567788877766543 2334457899999999999998887 999999887644221 112222222 4899
Q ss_pred ecCCCCCCeEEEEEEecCCCCCccceEEEEeecccC
Q psy10918 162 SPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTF 197 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~ 197 (207)
.++..+|+|.|+|.+.|..+.......+.+.+..+|
T Consensus 158 ~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p 193 (291)
T 2wim_A 158 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 193 (291)
T ss_dssp TTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCC
T ss_pred EecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCC
Confidence 999999999999999998765433344444444444
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=147.78 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=108.2
Q ss_pred cccCCCcEEEEeEecc--CCCCcEEEEEECCccccc---------cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 16 HIKEDSDVYFDCDIVA--VPPVYKVEWRHNNKTLHH---------NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.+|++++|.|.... .+.+ .+.|+|++..+.. ...+.....+++|.|.+++.+|+|.|.|.+.|..|
T Consensus 7 ~~~~G~~v~L~c~~~~~~~~~~-~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g 85 (176)
T 1hng_A 7 WGALGHGINLNIPNFQMTDDID-EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85 (176)
T ss_dssp EEETTSCEEECCTTCCCCTTEE-EEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEcCCcEEEcCCCCCcccccc-cEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence 4578999999995433 3334 8999999865421 11122223456799999999999999999998877
Q ss_pred CC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 85 DG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 85 ~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
.. ....+.|.|..++.. +.. ...+..+.|.|.+.+.|++ .+.|++++..+... .. +.+..
T Consensus 86 ~~~~~~~~~l~V~~~~~~----p~i--~~~~~~v~L~C~~~g~p~p-~i~W~~~g~~l~~~---------~~---~~i~~ 146 (176)
T 1hng_A 86 TRILNKALDLRILEMVSK----PMI--YWECSNATLTCEVLEGTDV-ELKLYQGKEHLRSL---------RQ---KTMSY 146 (176)
T ss_dssp CEEEEEEEEEEEECCCCC----CEE--EEETTTTEEEEECSSCSSC-EEEEEETTEEEEEE---------SS---SEEEE
T ss_pred CEEEEEEEEEEEeCCCCC----CEE--EecCCcEEEEEEecCCCCc-EEEEEECCEECCCC---------Cc---EEEEE
Confidence 65 344567777754321 111 1235569999999999986 99999998765321 11 33446
Q ss_pred CCCCCCeEEEEEEecCCCCCccceE
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
+..+|+|.|+|.|.|..|.......
T Consensus 147 ~~~~d~G~Y~C~a~N~~g~~~~~~~ 171 (176)
T 1hng_A 147 QWTNLRAPFKCKAVNRVSQESEMEV 171 (176)
T ss_dssp ECSCCSSCEEEEEEETTEEEEEEEC
T ss_pred EEccCCeEEEEEEEecCCCceeccc
Confidence 7789999999999999997755533
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=145.62 Aligned_cols=161 Identities=12% Similarity=0.120 Sum_probs=114.8
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc------------ccCCeEe-----c--CCeEEEEecCCCCCeee
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN------------IAQGIIM-----T--NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~------------~~~~~~~-----~--~~~l~i~~~~~~d~g~Y 75 (207)
..+.+|+++.|.|.+.+.+.+ .+.|++++..+... ...+... . ..+|.|.+++.+|+|.|
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 5 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEeCCCCEEEEEEEcCCCce-EEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 456789999999999877776 99999988532110 0011111 1 34599999999999999
Q ss_pred EEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCc
Q psy10918 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT 155 (207)
Q Consensus 76 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 155 (207)
.|.+.+..+ .+.|.|...+. +....+..|+.+.|.|.+.+.|.+ .+.|++++.... ..
T Consensus 84 ~C~~~~~~~-----~~~l~V~~~~~-----~~~~~v~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~-----------~~ 141 (184)
T 2ny1_B 84 ICEVEDQKE-----EVQLLVFGLTA-----NSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNI-----------QG 141 (184)
T ss_dssp EEEETTEEE-----EEEEEEEEEEE-----SSCSEEETTCCEEEEEECCTTCCC-EEEEECTTSCEE-----------EE
T ss_pred EEEEEcCCC-----cEEEEEEEecC-----CCCceeecCCCEEEEEEcCCCCCC-EEEEEeCCCccc-----------cC
Confidence 999987643 45566664221 122356799999999999998876 999999876531 12
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCC
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p 200 (207)
...|.|.+++.+|+|.|+|.|.|..+..+.. +.+.+.+.|.+|
T Consensus 142 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~--~~l~V~~~p~~~ 184 (184)
T 2ny1_B 142 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFK--IDIVVLAFQKAS 184 (184)
T ss_dssp SSEEEESSCCGGGCEEEEEEEEETTEEEEEE--EEEEEECCCC--
T ss_pred ceEEEEecCCcCCCeEEEEEEEECCceEEEE--EEEEEEecCCCC
Confidence 2358999999999999999999988776555 455555666543
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=160.23 Aligned_cols=178 Identities=16% Similarity=0.310 Sum_probs=134.1
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc--ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
......+.+|+++.|.|.+.+.+.+ .+.|++++..+... ........++.|.|.+++..|+|.|+|.+.|..+....
T Consensus 127 ~~~~~~~~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~ 205 (403)
T 3laf_A 127 QTESITAFMGDTVLLKCEVIGDPMP-TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTG 205 (403)
T ss_dssp CCCCEEEETTSCEEECCCEECSSCC-EEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBC
T ss_pred CCCcEEEEcCCeEEEEEEEcccCCC-eEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceec
Confidence 3445677899999999999888877 99999999887532 12223344678999999999999999999988776655
Q ss_pred ceEEEEEEeCCccc-----CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 89 NAFFLNVMYSPTCK-----PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 89 ~~~~l~v~~~~~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
..+.+.|...|... ...+....+.+|+.+.|.|.+.+.|++ .+.|++++..+........... + ..|.|.+
T Consensus 206 ~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~-~--~~L~i~~ 281 (403)
T 3laf_A 206 NEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLG-G--SNLLISN 281 (403)
T ss_dssp CCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCC-EEEEEETTEECCCSSSSEEEET-T--TEEEECS
T ss_pred cceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCC-eEEEEECCeeccCCCceEEECC-c--cEEEEeC
Confidence 66778888665432 112333456789999999999998887 9999998876543322222222 2 2589999
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
+..+|+|.|+|.|.|..|..+.+..+.|..
T Consensus 282 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 311 (403)
T 3laf_A 282 VTDDDSGTYTCVVTYKNENISASAELTVLV 311 (403)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CCHHHCEEEEEEEEcCCCceEEEEEEEEEC
Confidence 999999999999999998876676666654
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=160.88 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=130.8
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. .....+..|.|.+++..|.|.|+|.+.|..|.. ...+.
T Consensus 215 ~~~~~~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~ 288 (382)
T 1cs6_A 215 ADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGSQTS----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGR 288 (382)
T ss_dssp SEEEEETTCCEEEECEEEEESCC-EEEEEECCSCCSC----CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred CceEEeCCCeEEEEEEEccCCCC-EEEEEECCccccc----EEecCCcEEEEccCChhhCEEEEEEEEcCCCeE-EEEEE
Confidence 35567889999999999988877 9999998877543 122345789999999999999999999887764 55677
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|.|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+... .+..+ .. ..|.|.++..+|+|.|
T Consensus 289 l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~-~~~~~--~~--~~L~i~~v~~~d~G~Y 361 (382)
T 1cs6_A 289 IIIHAQPDWLDV-ITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLASQ-NRIEV--SG--GELRFSKLVLEDSGMY 361 (382)
T ss_dssp EEEEEEEEEEEC-CCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECCCC-SSEEE--ET--TEEEESSCCGGGCEEE
T ss_pred EEEecCCCcccC-CCccEEcCCCeEEEEEEeeeecCC-EEEEEECCEECCCC-ceEEE--EC--CEEEECcCCcccCEEE
Confidence 888877765432 333457789999999999999987 99999998775432 11222 12 2599999999999999
Q ss_pred EEEEecCCCCCccceEEEEe
Q psy10918 173 ICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|.|.|..|....++.+.|.
T Consensus 362 ~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 362 QCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeCCCeEEEEEEEEEe
Confidence 99999999988777666654
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=155.45 Aligned_cols=174 Identities=13% Similarity=0.196 Sum_probs=123.2
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
....+.+|+++.|.|.+.+.+.+..+.|++ ++..+.. ........+..|.|.+++..|+|.|+|.+.+......+..+
T Consensus 97 ~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~ 175 (289)
T 3ejj_X 97 QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175 (289)
T ss_dssp SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT-TCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC-CccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccE
Confidence 456678899999999998876653599987 5544443 22333345678999999999999999999854333335567
Q ss_pred EEEEEe----CCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeec--CceEEEEEecC
Q psy10918 92 FLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRS--GTLSVVAYSPN 164 (207)
Q Consensus 92 ~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~ 164 (207)
.|.|.. +|.+.. .+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+...... ..... .....|.|.++
T Consensus 176 ~l~V~~~~~~~p~i~~-~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v 252 (289)
T 3ejj_X 176 WLKVNRVHPEPPQIKL-EPSKLVRIRGEAAQIVCSATNAEVGF-NVILKRGDTKLEIPLNS-DFQDNYYKKVRALSLNAV 252 (289)
T ss_dssp EEEEESSCCCCCEEEE-ESSSEECCSSSCEEEEEEEEESSSCC-EEEEEETTEECCCCEEE-EECSSSEEEEEEEEESSC
T ss_pred EEEEEECCCCCCeEEe-cCCceEEEeCCcEEEEEEeCCCCCce-EEEEEECCEEeeccCCc-ccccceEEeeEEEEEEee
Confidence 788873 343332 233334568999999999998 5665 99999998765322111 11111 12457999999
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.+|+|.|+|.|.|..|....++.+.
T Consensus 253 ~~~d~G~Y~C~a~N~~G~~~~s~~L~ 278 (289)
T 3ejj_X 253 DFQDAGIYSCVASNDVGTRTATMNFQ 278 (289)
T ss_dssp CSSSCEEEEEEEECSSCEEEEEEEEE
T ss_pred cccCCEEEEEEEEcCCCCccccEEEE
Confidence 99999999999999999887665554
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=149.91 Aligned_cols=175 Identities=14% Similarity=0.195 Sum_probs=116.6
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--cc----------cccccCCeEe--c--CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TL----------HHNIAQGIIM--T--NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~----------~~~~~~~~~~--~--~~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|+++.|.|.+.+.+.+ .+.|++++. .+ ......++.. . ..+|.|.+++.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEeCCccEEEeCCCcEEEEEECCCCCCC-CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChh
Confidence 34455677788999999999999988876 899998542 11 0000112211 1 237999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeec-c
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVN-V 145 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~-~ 145 (207)
|+|.|.|.+.+..+........|.|.. +|.+....+.. ....|+.+.|.|.+.+ .|++..+.|+++|..+... .
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 160 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 160 (213)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred hCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCCh-hhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence 999999999987665444445677764 33332212211 1236889999999987 4544589999998765432 1
Q ss_pred ceeEEeec--Cc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 146 AQAHILRS--GT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 146 ~~~~~~~~--~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
........ +. .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 11111111 11 2479999999999999999999987654
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=152.00 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=112.7
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC----CCccce
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG----DGESNA 90 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~----~~~~~~ 90 (207)
..+.+|++++|.|.+.+. .+ .+.|+|++..+.... .....+..|.|.+++.+|+|.|.|.+.+..+ ...+..
T Consensus 33 ~~v~~G~~v~L~C~~~~~-~~-~~~W~k~g~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~ 108 (316)
T 3vh8_G 33 AVVPRGGHVTLRCHYRHR-FN-NFMLYKEDRIHIPIF--HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNP 108 (316)
T ss_dssp SEEETTSCEEEEEEBTTB-CC-SEEEEESSCSSSCHH--HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCC
T ss_pred CccCCCCCEEEEEEccCC-Cc-eEEEEeCCCccceee--cCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCc
Confidence 567899999999999887 34 899999998754311 1123357899999999999999999985322 223456
Q ss_pred EEEEEEeCCccc--CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 91 FFLNVMYSPTCK--PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 91 ~~l~v~~~~~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
+.|.|...+..+ ...+.. .+.+|+.+.|.|.+.+ +++ .+.|++++..+.................|.|.+++.+|
T Consensus 109 ~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 185 (316)
T 3vh8_G 109 VVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWSDI-MFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185 (316)
T ss_dssp EEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEESS-CCS-EEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGG
T ss_pred EEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcCCC-CCc-EEEEEECCCccccceeeeeecCCCceEEEEECCCChhh
Confidence 677776543211 112222 2678999999999954 444 89999988765322111112222234579999999999
Q ss_pred CeEEEEEEecCCCC
Q psy10918 169 YGTLICWGSNKIGH 182 (207)
Q Consensus 169 ~g~y~C~~~n~~g~ 182 (207)
+|.|+|.|.|..|.
T Consensus 186 ~G~Y~C~a~n~~g~ 199 (316)
T 3vh8_G 186 AGTYRCYGSVTHTP 199 (316)
T ss_dssp CEEEEEEEECTTCT
T ss_pred CceEEEEEecCCCC
Confidence 99999999998774
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=162.03 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=99.5
Q ss_pred cccCCCcEEEEeEe-----ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC-CCC--c
Q psy10918 16 HIKEDSDVYFDCDI-----VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE-GDG--E 87 (207)
Q Consensus 16 ~v~~g~~v~l~C~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~-~~~--~ 87 (207)
.+.+|+++.|.|.+ .+.|.+ .+.|++++..+... ..+...+..|.|.+++.+|+|.|+|.+.|.. +.. .
T Consensus 131 ~~~~g~~~~l~C~~~~~~~~g~p~~-~v~W~k~~~~l~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~ 207 (349)
T 4dep_C 131 LYIEYGIQRITCPNVDGYFPSSVKP-TITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHL 207 (349)
T ss_dssp EETTCSEEEEECCSCTTSSCTTSCC-EEEEEETTEECCSC--SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred eeecCccEEEEcCCCcccccCCCCc-eEEEeeCCEECCCc--cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEE
Confidence 56789999999985 566776 99999999988542 3455566789999999999999999999987 433 2
Q ss_pred cceEEEEEEeC------CcccCCCCce-eeeeeCCcEEEEEEec----cCCCCceEEEEEcCceeeeccceeEE-----e
Q psy10918 88 SNAFFLNVMYS------PTCKPHQQRV-LGVARQEKVNISCEVD----ANPPDVKFSWTFNNSAETVNVAQAHI-----L 151 (207)
Q Consensus 88 ~~~~~l~v~~~------~~~~~~~~~~-~~~~~g~~~~l~C~~~----~~~~~~~~~W~~~~~~~~~~~~~~~~-----~ 151 (207)
+..+.|.|..+ |.+....... ..+..|+.+.|.|.+. +.|.+ .+.|++++..+......... .
T Consensus 208 ~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~ 286 (349)
T 4dep_C 208 TRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRN-EVWWTIDGKKPDDITIDVTINESISH 286 (349)
T ss_dssp EEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCC-EEEEESSCC--------CCCCEEEEC
T ss_pred EEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCC-EEEEEECCEEccccCCccccccceee
Confidence 45666777653 3332211111 1567899999999999 45666 99999998775431111111 0
Q ss_pred e--cC--ceEEEEEecCCCCCC-eEEEEEEecCCCCCccceEEEE
Q psy10918 152 R--SG--TLSVVAYSPNSELDY-GTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 152 ~--~~--~~~~l~i~~~~~~~~-g~y~C~~~n~~g~~~~~~~~~v 191 (207)
. .+ ....|.|.++..+|+ |.|+|.|.|..|.....+.+.|
T Consensus 287 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v 331 (349)
T 4dep_C 287 SRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331 (349)
T ss_dssp CTTCCEEEEECC-------------CEEEEECSSCEEEEECC---
T ss_pred ecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEee
Confidence 0 11 133488999999999 9999999999998876666555
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-26 Score=165.28 Aligned_cols=176 Identities=17% Similarity=0.235 Sum_probs=63.7
Q ss_pred cCCCcccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
+....+.+|+++.|.|.+.+. |.+ .+.|++++..+.... ++...+..|.|.+++.+|+|.|+|.+.|. +.. ...
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~g~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~-~~~ 89 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMG-PTVWVKDGTGLVPSE--RVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRV-LCH 89 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCc-ceEEEECCeeCCCcc--cEEeccceEEEeecccccCEEEEEEEEeC-CeE-EEE
Confidence 566778899999999999876 445 899999998876532 23335678999999999999999999987 543 445
Q ss_pred EEEEEEeCCc----------------------ccC---CCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc
Q psy10918 91 FFLNVMYSPT----------------------CKP---HQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV 145 (207)
Q Consensus 91 ~~l~v~~~~~----------------------~~~---~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~ 145 (207)
+.|.|...+. +.. .......+..|+.+.|.|.+.+.|.+ .+.|++++..+....
T Consensus 90 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~ 168 (334)
T 1ry7_B 90 FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEH 168 (334)
T ss_dssp -----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCC-EEECCBTTBCCCTTS
T ss_pred EEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCC-eEEEEECCEECcccc
Confidence 6677664331 111 11123456789999999999998887 999999987654221
Q ss_pred ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 146 AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 146 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
.............|.|.+++.+|+|.|+|.|.|..|.......+.|..
T Consensus 169 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 216 (334)
T 1ry7_B 169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 216 (334)
T ss_dssp STTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEEC
T ss_pred cccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEec
Confidence 111111223344699999999999999999999998776666666554
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=156.77 Aligned_cols=173 Identities=14% Similarity=0.238 Sum_probs=121.9
Q ss_pred cCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCC-----eEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQG-----IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.....+..|+.+.+.|.+. +.|.+ .+.|++++..+....... .....+.|.|.+...+|.|.|+|.+.|..+.
T Consensus 124 ~~~~~~~~~~~~~~~C~~~~~~P~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 202 (313)
T 4fqp_A 124 VQKVQLTGEPVPMARCVSTGGRPPA-QITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFE 202 (313)
T ss_dssp ECCBCCCSSCEEEEEEEEEEEBSCC-EEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSS
T ss_pred ccceEeecCceEEEEEEccCccCCc-EEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcC
Confidence 3445566778888999875 56766 999999988775421111 1111235888888899999999999987654
Q ss_pred C-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 86 G-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 86 ~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
. ....+.|.|.++|.+.........+..|+.+.|.|.+.|.|.|..|.|++++..+... ... .+ ..|.|.++
T Consensus 203 ~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~----~~~-~~--~~L~i~~v 275 (313)
T 4fqp_A 203 KPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF----AVA-QG--AQLLIRPV 275 (313)
T ss_dssp SCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT----EEE-ET--TEEEECCC
T ss_pred ccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc----eEE-eC--CEEEECcC
Confidence 3 2334566677777654333333345578899999999999887579999998765321 111 12 25999999
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 276 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 303 (313)
T 4fqp_A 276 DKPINTTLICNVTNALGARQAELTVQVK 303 (313)
T ss_dssp SSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 9999999999999999987666555544
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-25 Score=166.74 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=123.8
Q ss_pred CCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccC--------CeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 13 NPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQ--------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
....+.+|+++.|.|.+. +.|.+ .+.|++++..+...... .......+|.|.+++.+|+|.|+|.+.|.
T Consensus 235 ~~~~v~~G~~v~L~C~~~~g~p~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~- 312 (527)
T 3qs9_E 235 PQLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH- 312 (527)
T ss_dssp CEEEECTTSCEEEEEEEEESSSCC-CEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-
T ss_pred CceEEeCCCeEEEEEEEccCCCCe-EEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-
Confidence 455678999999999996 77777 99999999877643211 11122346999999999999999999987
Q ss_pred CCCccceEEEEEEeCCcccCCC-CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQ-QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
....+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.| .+.|+++|..+..... .. .....|.|.
T Consensus 313 ---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~k~g~~l~~~~~---~~--~~~~~L~I~ 383 (527)
T 3qs9_E 313 ---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQK---GL--DNGYSISKF 383 (527)
T ss_dssp ---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCC-EEEEEETTEEEECBCC---BC--SSSSEEEEE
T ss_pred ---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCC-EEEEEECCEECcCCcc---cc--cCCcEEEEe
Confidence 3556778888776543222 223456789999999999999997 9999999987643221 11 123358899
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
++..+|+|.|+|.|.|..|.....+.+.|.
T Consensus 384 ~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~ 413 (527)
T 3qs9_E 384 CNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413 (527)
T ss_dssp CCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred cCCcccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence 999999999999999999987665444443
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=159.71 Aligned_cols=173 Identities=17% Similarity=0.336 Sum_probs=123.0
Q ss_pred eeeeecCCCcc---cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEec-CCCCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHI---KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRV-NRQSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~~~ 82 (207)
.|...+....+ .+|+.+.|.|.+.+.|.+ .++|+++|..+......+....++.|.|.+. +.+|+|.|.|.+.|.
T Consensus 7 ~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~ 85 (384)
T 3kld_A 7 VFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKP-HIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 85 (384)
T ss_dssp EEEECCCCEEEETTCSCSEEEECCEEEEESCC-EEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred EEEeCCcceEeecCCCCCeEEEEeEecCCCCC-EEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcC
Confidence 34444444443 578999999999999988 9999999998875444455556778888876 678999999999998
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
.|...+....+.+...+.+.........+..|+.+.|.|......+.+.+.|++++..+... ........ ...|.|.
T Consensus 86 ~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~-~~~L~I~ 162 (384)
T 3kld_A 86 FGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD--NRRFVSQE-TGNLYIA 162 (384)
T ss_dssp TEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCS--SSEEECTT-TCCEEES
T ss_pred cccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEee--ccEEEEcC-CCcEEEe
Confidence 88655556667776655544333344567899999999976543333499999988654321 11222111 2248999
Q ss_pred cCCCCCCeEEEEEEecCCCCC
Q psy10918 163 PNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~ 183 (207)
++..+|+|.|+|.|.|..+..
T Consensus 163 ~v~~~D~G~Y~C~a~n~~~~~ 183 (384)
T 3kld_A 163 KVEKSDVGNYTCVVTNTVTNH 183 (384)
T ss_dssp SCCGGGCEEEEEEEEETTTTE
T ss_pred ecCHHHCceEEEEEecccccc
Confidence 999999999999999987643
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=156.68 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=124.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECC-ccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN-KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
....+.+|+++.|.|.+.+......+.|++++ ..+.. ........+..|.|.+++..|+|.|+|.+.|..+...+..+
T Consensus 97 ~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~ 175 (292)
T 4dkd_C 97 QEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMR-HTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175 (292)
T ss_dssp SEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCS-SCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCE
T ss_pred CeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCcccc-CCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEE
Confidence 44567899999999999873221389999974 44433 22222333456999999999999999999987666556678
Q ss_pred EEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee--cCceEEEEEecCC
Q psy10918 92 FLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR--SGTLSVVAYSPNS 165 (207)
Q Consensus 92 ~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~ 165 (207)
.|.|.. +|.+.. .+....+..|+.+.|.|.+.+.|++..+.|++++..+..... ..... ......|.|.++.
T Consensus 176 ~l~V~~~~~~~p~i~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~ 253 (292)
T 4dkd_C 176 RLKVQKVIPGPPALTL-VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQ-SDFHNNRYQKVLTLNLDQVD 253 (292)
T ss_dssp EEEEECCCCSSCEEEE-ESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBE-EEEETTEEEEEEEEEESSCC
T ss_pred EEEEeCCCCCCCeEEc-cCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCcc-ceeccceeeeEEEEEECccC
Confidence 888886 444332 233334468999999999998877668999988775432221 11111 1123479999999
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.+|+|.|+|.|.|..|..+.++.+.|.
T Consensus 254 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 280 (292)
T 4dkd_C 254 FQHAGNYSCVASNVQGKHSTSMFFRVV 280 (292)
T ss_dssp TTSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred hhcCeEEEEEEecCCCCceeEEEEEEe
Confidence 999999999999999987666554444
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=151.26 Aligned_cols=176 Identities=15% Similarity=0.219 Sum_probs=121.1
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccC-CCCcEEEEEECCccccc------c-ccCCeE---------ecCCeEEEEecC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHH------N-IAQGII---------MTNQSLVLQRVN 68 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~------~-~~~~~~---------~~~~~l~i~~~~ 68 (207)
+.+...+....+.+|+++.|.|.+.+. |.+ .+.|++++.+... . ...+.. ....+|.|.+++
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~ 82 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVG-PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT 82 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCC-CEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCc-eEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence 455566778889999999999999887 666 9999998865321 0 001111 224579999999
Q ss_pred CCCCeeeEEEEeeeCCCC----ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCC-ceEEEEEcCceeee
Q psy10918 69 RQSAGNYTCVGFNIEGDG----ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD-VKFSWTFNNSAETV 143 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~ 143 (207)
.+|+|.|+|.+.|..+.. ......|.|..+|..+........+.+|+.+.|.|.+.+.|++ ..+.|++++..+..
T Consensus 83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~ 162 (327)
T 2wng_A 83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD 162 (327)
T ss_dssp GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence 999999999999875431 1235678888766543322222446789999999999988765 39999999876543
Q ss_pred ccceeEEe-ecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 144 NVAQAHIL-RSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 144 ~~~~~~~~-~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
........ .++. .+.|.|.....+|.|.|+|.|.|..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence 22111111 1111 234777767777789999999998775
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=148.09 Aligned_cols=170 Identities=10% Similarity=0.149 Sum_probs=112.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEEecCCCCCeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y 75 (207)
+....+.+|++++|.|.+.+.+.+ .+.|+++. ..+. .....++.. . ...|.|.+++.+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY 85 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCC-CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence 566788999999999999988776 89999953 2210 000112211 1 23799999999999999
Q ss_pred EEEEeeeCCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeec-cceeEE
Q psy10918 76 TCVGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVN-VAQAHI 150 (207)
Q Consensus 76 ~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~-~~~~~~ 150 (207)
.|.+.+..+........|.|.. +|.+....+.. ....|+.+.|.|.+.+. |++..+.|+++|..+... ......
T Consensus 86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~ 164 (210)
T 1lk3_L 86 FCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTD 164 (210)
T ss_dssp EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECC
T ss_pred EEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCC
Confidence 9999987654434445677764 23322212211 12368899999999974 444589999998765422 111111
Q ss_pred ee--cCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 151 LR--SGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 151 ~~--~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.. ++. .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 165 QDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred ccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 11 121 2468999999999999999999986644
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=145.16 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=116.4
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc-C--CeEecCCeEEEEecCCCCCeeeEEEEeeeC----CCCc
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-Q--GIIMTNQSLVLQRVNRQSAGNYTCVGFNIE----GDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~--~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~----~~~~ 87 (207)
..+.+|++++|.|.+... .+ .+.|+|++..+..... . .....+..|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 16 ~~V~~G~~VtL~C~~~~~-~~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~ 93 (257)
T 1b6u_A 16 PLVKSEETVILQCWSDVR-FQ-HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAP 93 (257)
T ss_dssp SEEESSCCEEEEEEESSC-CS-EEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCC
T ss_pred CEecCCCCEEEEEecCCC-Cc-EEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCcccccc
Confidence 567899999999998753 34 8999999976542110 0 011234579999999999999999997542 2233
Q ss_pred cceEEEEEEeC---CcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 88 SNAFFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 88 ~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
+..+.|.|... |.+. ..+. ..+.+|+.++|.|.+.+.+ + .+.|+|+|..+.................|.|.++
T Consensus 94 S~~~~L~V~~~~~~P~l~-~~p~-~~V~~G~~vtL~C~~~~~~-~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v 169 (257)
T 1b6u_A 94 SDPLDIVITGLYEKPSLS-AQPG-PTVLAGESVTLSCSSRSSY-D-MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA 169 (257)
T ss_dssp CCCEEEEEECSSCCCEEE-CSSC-TTCBTTCEEEEEEECSSCC-S-EEEEEETTSSCEECCBCBCCSSSCCBEEEEEEEC
T ss_pred CCCEEEecccCCCCcceE-ccCC-CccCCCCEEEEEEeCCCCC-c-EEEEEECCcccCcccccccccCCceeEEEEeccc
Confidence 55677888753 2222 1222 2467999999999998754 4 9999999876543221111111122457899999
Q ss_pred CCCCCeEEEEEEecCCC---CCccceEEEEeecccCC
Q psy10918 165 SELDYGTLICWGSNKIG---HQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g---~~~~~~~~~v~~~~~~~ 198 (207)
+ |+|.|+|.|.|... ....+..+.|.+.++|.
T Consensus 170 ~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 170 T--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp C--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred c--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 8 99999999997532 22334456666666643
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=140.90 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=106.9
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-e--EecCCeEEEEecCCCCCeeeEEEEeeeC----CCCc
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-I--IMTNQSLVLQRVNRQSAGNYTCVGFNIE----GDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~--~~~~~~l~i~~~~~~d~g~Y~C~~~~~~----~~~~ 87 (207)
..+.+|++++|.|.+.+ +.+ .+.|+|++..+....... . ...+..|.|.+++..|+|.|+|.+.+.. ....
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~ 94 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFE-HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAP 94 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCS-EEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCC-EEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCC
Confidence 56789999999999874 445 999999998664311100 0 1234579999999999999999997542 1233
Q ss_pred cceEEEEEEeCC---cccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-ceEEEEEec
Q psy10918 88 SNAFFLNVMYSP---TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-TLSVVAYSP 163 (207)
Q Consensus 88 ~~~~~l~v~~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~ 163 (207)
+..+.|.|...+ .+. ..+. ..+.+|+.++|.|.+.+ +.+ .+.|+++|..+....... ....+ ....|.|.+
T Consensus 95 s~~~~l~V~~~~~~p~i~-~~p~-~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~-~~~~~~~~~~L~i~~ 169 (201)
T 1nkr_A 95 SDPLDIVIIGLYEKPSLS-AQPG-PTVLAGENVTLSCSSRS-SYD-MYHLSREGEAHERRLPAG-PKVNGTFQADFPLGP 169 (201)
T ss_dssp CCCEEEEEECSSCCCEEE-EESC-SEECTTCEEEEEEEESS-CCS-EEEEEETTCSSCEEEECE-EEETTEEEEEEEEEE
T ss_pred CCCEEEEeeccCCCCcee-cCCC-CccCCCCeEEEEEeCCC-CCc-eEEEEECCcccCcccccc-cccCCceEEEEEeCC
Confidence 556678887532 221 1122 24679999999999986 444 999999987654321111 11122 245689999
Q ss_pred CCCCCCeEEEEEEecC
Q psy10918 164 NSELDYGTLICWGSNK 179 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~ 179 (207)
++ |+|.|+|.|.+.
T Consensus 170 v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 170 AT--HGGTYRCFGSFH 183 (201)
T ss_dssp CC--SCEEEEEEEEET
T ss_pred cC--CCeeEEEEEEcC
Confidence 98 999999999864
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=157.31 Aligned_cols=172 Identities=17% Similarity=0.315 Sum_probs=127.9
Q ss_pred eeeeecCCCcc---cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCC-CCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHI---KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~ 82 (207)
.|...+....+ .+|+++.|.|.+.+.|.+ .+.|++++..+......+....++.|.|.++.. .|+|.|+|.+.|.
T Consensus 6 ~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~ 84 (382)
T 1cs6_A 6 VFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84 (382)
T ss_dssp EEEECCCCEEEETTCSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred EEEECCCcEEEecCCCCCcEEEEEEecCCCCC-EEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcC
Confidence 34444555544 689999999999988877 999999999887654445556678999999987 9999999999988
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
.|...+..+.|.|...+.+.........+.+|+.+.|.|.+. +.|.+ .+.|++++..+........... .....|.|
T Consensus 85 ~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~-~~~~~L~i 162 (382)
T 1cs6_A 85 RGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVS-QTTGNLYI 162 (382)
T ss_dssp TEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCC-EEEEEESSTTCBCCCCSSEEEC-TTTCCEEE
T ss_pred CcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCc-EEEEEECCCccccccCceEEEe-cCceEEEE
Confidence 776555567788877665544444455678999999999865 44665 9999999876432222212222 22235899
Q ss_pred ecCCCCCCeEEEEEEecCCC
Q psy10918 162 SPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g 181 (207)
.+++.+|+|.|+|.+.|..|
T Consensus 163 ~~~~~~d~G~Y~C~~~n~~g 182 (382)
T 1cs6_A 163 AKTEASDLGNYSCFATSHID 182 (382)
T ss_dssp SSCCGGGCEEEEEEEEEEET
T ss_pred EeeCcccCeeEEEEEEEccc
Confidence 99999999999999999874
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=145.86 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=121.3
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+....+.+|+.+.|.|.+.+.+.+..+.|++++..+... +..|.|.+++..|+|.|+|.+.+..+ +.
T Consensus 6 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------~~~l~i~~~~~~d~G~Y~C~~~~~~~---s~ 74 (262)
T 3rjd_A 6 LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------TPSYRITSASVNDSGEYRCQRGLSGR---SD 74 (262)
T ss_dssp ESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEESSSCC---CC
T ss_pred cCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------CCeEEEecCCcccCeEEEEEEecCCc---cc
Confidence 34666778999999999999887765589999999877542 56799999999999999999987544 34
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
.+.|.|..++... .+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+... .....|.|.+++.+|
T Consensus 75 ~~~l~v~~~~~~~--~~~~~~~~~g~~v~l~C~~~~~~p~~-~v~W~~~g~~~~~~---------~~~~~l~i~~~~~~d 142 (262)
T 3rjd_A 75 PIQLEIHRGWLLL--QVSSRVFTEGEPLALRCHAWKDKLVY-NVLYYRNGKAFKFF---------HWNSNLTILKTNISH 142 (262)
T ss_dssp CEEEEEECSSEEE--EESCSEEETTSCEEEEEEEGGGCCCE-EEEEEETTEEEEEE---------EECCCEEESSCCGGG
T ss_pred cEEEEEeccceEe--cCCCeEEecCCeEEEEEEccCCCCCc-eEEEEECCcccccc---------CCCCeEEEEECChhh
Confidence 5677887655332 2223346789999999999 455554 99999988765321 112348899999999
Q ss_pred CeEEEEEEecCCCCCccceEEEEe
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|.|+|.|.|..+..+....+.|.
T Consensus 143 ~G~Y~C~~~n~~~~~~~~~~l~V~ 166 (262)
T 3rjd_A 143 NGTYHCSGMGKHRYTSAGISVTVK 166 (262)
T ss_dssp CEEEEEEEESSSEEEEECEEEEEE
T ss_pred CEEEEEEEeCCCCccccceEEEec
Confidence 999999999988766555555544
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=143.68 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=106.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc---ccc----------c---CCe-EecCCeEEEEecCCCCCee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH---HNI----------A---QGI-IMTNQSLVLQRVNRQSAGN 74 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~---~~~----------~---~~~-~~~~~~l~i~~~~~~d~g~ 74 (207)
+....+.+|++++|.|.+.+......+.|++++..+. ... . .+. ...+.+|.|.+++.+|+|.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~ 84 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS 84 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence 4455678899999999987533323899999876442 100 0 011 1245789999999999999
Q ss_pred eEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCC-cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec
Q psy10918 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQE-KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS 153 (207)
Q Consensus 75 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 153 (207)
|.|.+.+..+.. ...+.|.|..++..+...........|. .+.|.|.+.+.++++.+.|++++..+. .
T Consensus 85 Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~----------~ 153 (193)
T 2if7_A 85 YRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS----------S 153 (193)
T ss_dssp EEEEEECSSCEE-EEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE----------S
T ss_pred EEEEEEecCCCe-EEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC----------C
Confidence 999998776654 3467788876543322111111123455 799999999865434999999876431 1
Q ss_pred CceEEEEEecCCCC-CCeEEEEEEecCCCCCc
Q psy10918 154 GTLSVVAYSPNSEL-DYGTLICWGSNKIGHQR 184 (207)
Q Consensus 154 ~~~~~l~i~~~~~~-~~g~y~C~~~n~~g~~~ 184 (207)
+. .|.|...... |+|.|+|.|.|..|..+
T Consensus 154 ~~--~l~i~~~~~~~d~G~Y~C~a~N~~g~~s 183 (193)
T 2if7_A 154 QP--NLTVSWDPRISSEQDYTCIAENAVSNLS 183 (193)
T ss_dssp SS--EEEEEECTTTCSCCEEEEEEEETTEEEE
T ss_pred CC--eEEEEeccCcCCCCcEEEEEECCCCccc
Confidence 11 2555544444 89999999999998763
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-25 Score=155.98 Aligned_cols=177 Identities=17% Similarity=0.206 Sum_probs=125.2
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
........|+.+.|.|.+ .+.|.+ .+.|++++..+...... ........|.|.++...|.|.|+|.+.|..+...
T Consensus 121 ~~~~~~~~~~~~~l~C~~~~g~P~~-~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~ 199 (308)
T 4fom_A 121 PDSLIDGGNETVAAICIAATGKPVA-HIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKD 199 (308)
T ss_dssp SSCCCTTCSCEEEEEEEEEEEBSCC-EEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred cceeEEcCCceEEEEEEecCCcCCc-eEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCc
Confidence 344455668889999986 567776 99999999887642211 1112224689999999999999999998766542
Q ss_pred -cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 88 -SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 88 -~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
...+.|.|..+|.+.........+..|+.+.|.|.+.|.|+|..+.|++++..+.... . ......|.|.+++.
T Consensus 200 ~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~----~--~~~~~~l~i~~v~~ 273 (308)
T 4fom_A 200 IRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL----L--ASDNTLHFVHPLTF 273 (308)
T ss_dssp EEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC----B--CSTTEEECCSCCCS
T ss_pred eEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE----E--EcCCeEEEECCCCh
Confidence 3345666777776554444444556788999999999998875799999887643211 1 12234566788999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEeecccC
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIVSAVTF 197 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~ 197 (207)
+|+|.|+|.|.|..|..+.++. |.+..+|
T Consensus 274 ~d~G~Y~C~A~N~~G~~~~~~~--l~V~~~P 302 (308)
T 4fom_A 274 NYSGVYICKVTNSLGQRSDQKV--IYISDPP 302 (308)
T ss_dssp CCCSEEEEEEEETTEEEEEEEE--CCEECCC
T ss_pred hhCEEEEEEEEeCCCcEEEEEE--EEEEcCC
Confidence 9999999999999998765544 4444444
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=167.82 Aligned_cols=179 Identities=19% Similarity=0.343 Sum_probs=137.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccceE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... ......+++|.|.++. ..|+|.|+|.+.|..|......+
T Consensus 534 ~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~~~~l~~~~-~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~ 611 (816)
T 3dmk_A 534 EKKAIVAGETLIVTCPVAGYPID-SIVWERDNRALPINR-KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611 (816)
T ss_dssp CCEEEETTCCEEEECCEECSSEE-EEEEEETTEESCCST-TEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEE
T ss_pred CCeEEecCCeEEEEEEecCCCCC-EEEEEECCeEcccCC-ceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeE
Confidence 34567889999999999998876 999999998886533 2233456789999998 58999999999998886656667
Q ss_pred EEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 92 FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 92 ~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
.+.|..+|...........+..|+.+.|.|.+.+.+++..+.|+++|..+...............+.|.|.++..+|+|.
T Consensus 612 ~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 691 (816)
T 3dmk_A 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691 (816)
T ss_dssp EEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEE
T ss_pred EEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEE
Confidence 78888777655444344457789999999999877766699999998875432222222233456789999999999999
Q ss_pred EEEEEecCCCCCccceEEEEee
Q psy10918 172 LICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 172 y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
|+|.|.|..|....++.+.|..
T Consensus 692 Y~C~a~N~~g~~~~~~~l~V~~ 713 (816)
T 3dmk_A 692 FTCHARNLAGHQQFTTPLNVYV 713 (816)
T ss_dssp EEEEEECSSCEEEEEEEECEEE
T ss_pred EEEEEEeCCccEEEEEEEEEEe
Confidence 9999999999886666665553
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=148.64 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=118.8
Q ss_pred CCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCeEec--C--CeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 14 PDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGIIMT--N--QSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
...+.+|+++.|.|.+. +.|.+ .+.|++++..+.......+... . .+|.|.+++..|+|.|.|.+.+....
T Consensus 116 ~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--- 191 (312)
T 2y23_A 116 AVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT--- 191 (312)
T ss_dssp EEEECSSSCEEEEEEESCCCSSC-EEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE---
T ss_pred ceEEeeCCCEEEEEEEEeCCCCC-EEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce---
Confidence 56678899999999998 77776 9999999998876433323221 1 23999999999999999999754322
Q ss_pred ceEEEEEE---------------------eCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce
Q psy10918 89 NAFFLNVM---------------------YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ 147 (207)
Q Consensus 89 ~~~~l~v~---------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~ 147 (207)
....+.+. .+|.+. .+....+..|+.+.|.|.+.+.|++..+.|++++..+.... .
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~-~ 268 (312)
T 2y23_A 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-K 268 (312)
T ss_dssp EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE--EEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEEC-C
T ss_pred EEEEEEEcchhhhhhcccccccccchhhccCCcee--ecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCC-c
Confidence 22223331 012111 11124567999999999999988766999999988765321 1
Q ss_pred eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 148 AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 148 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
..+. +....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 269 ~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 309 (312)
T 2y23_A 269 HDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309 (312)
T ss_dssp C------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEEC
T ss_pred EEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEE
Confidence 1221 3456799999999999999999999999886665543
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=152.56 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=124.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-----------CcEEEEEECCcccc----c---cccCCeEecCCeEEEEecCCCCCe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-----------VYKVEWRHNNKTLH----H---NIAQGIIMTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-----------~~~i~W~~~~~~~~----~---~~~~~~~~~~~~l~i~~~~~~d~g 73 (207)
.....+.+|+++.|.|.+.+.|. + .+.|++++.... . ....+....+..|.|.+++.+|+|
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 92 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGL-TLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTC-EEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCc-eEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCE
Confidence 45667899999999999987553 5 999999884221 0 123344556778999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEeCCcccCCC---CceeeeeeCCcEEEEEEe-----ccCCCCceEEEEEcCceeeecc
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ---QRVLGVARQEKVNISCEV-----DANPPDVKFSWTFNNSAETVNV 145 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~---~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~W~~~~~~~~~~~ 145 (207)
.|+|.+.|..+.. ...+.|.|..++...... +....+..|+.+.|.|.+ .+.|.+ .+.|++++..+...
T Consensus 93 ~Y~C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~-~v~W~k~~~~l~~~- 169 (349)
T 4dep_C 93 NYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP-TITWYMGCYKIQNF- 169 (349)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCC-EEEEEETTEECCSC-
T ss_pred EEEEEEecCCceE-EEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCc-eEEEeeCCEECCCc-
Confidence 9999999876654 446778888765433222 223356689999999985 566776 99999998765321
Q ss_pred ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc--cceEEEEeec
Q psy10918 146 AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR--VPCVFHIVSA 194 (207)
Q Consensus 146 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~--~~~~~~v~~~ 194 (207)
..+...+ ..|.|.+++.+|+|.|+|.|.|..+... .+..+.|.+.
T Consensus 170 --~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~ 216 (349)
T 4dep_C 170 --NNVIPEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV 216 (349)
T ss_dssp --SSEEEET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred --cceeecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEE
Confidence 2222333 3599999999999999999999874332 2344444443
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=142.68 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=104.4
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+.+|++++|.|.+ +.+ .+.|+|++..+... ...+.+|.|.+++.+|+|.|.|.+.+. . +..+.|.+.
T Consensus 15 ~~~G~~v~L~C~~---p~~-~i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~-~---s~~~~v~v~ 81 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAK-NITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQN-K---SKPLQVYYR 81 (204)
T ss_dssp CCSSSEEEEEECS---CSS-EEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSS-C---CCCEEEEEE
T ss_pred ecCCCeEEEEEcC---CCC-EEEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCC-C---CeeEEEEEE
Confidence 4579999999998 555 99999999887542 123567999999999999999996532 1 223455544
Q ss_pred eC------------------------------CcccCCCCceeeee-eCCcEEEEEEeccCCCCceEEEEEcCceeeecc
Q psy10918 97 YS------------------------------PTCKPHQQRVLGVA-RQEKVNISCEVDANPPDVKFSWTFNNSAETVNV 145 (207)
Q Consensus 97 ~~------------------------------~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~ 145 (207)
.. +... .... ..+. +|+.+.|.|. +.|.+ .+.|++++..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-~~v~~~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~ 156 (204)
T 1sy6_A 82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI-TQTP-YKVSISGTTVILTCP--QYPGS-EILWQHNDKNIGGDE 156 (204)
T ss_dssp C-------------------------------------CCC-CEEEEETTEEEEECS--CCCSS-CEEEEETTEEESCCT
T ss_pred Eeccccccccccccccccccccccccccccccccce-ecCC-ceeeecCCcEEEEcC--CCCCC-ceEEEECCEECCCcc
Confidence 00 0001 1111 1234 8999999998 67776 899999987754321
Q ss_pred ceeEEeecCceEEEEEecC-CCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 146 AQAHILRSGTLSVVAYSPN-SELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 146 ~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
....+... ...|.|.++ +.+|+|.|+|.|.|..|.. .+..+.+.
T Consensus 157 ~~~~~~~~--~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~-~s~~l~l~ 201 (204)
T 1sy6_A 157 DDKNIGSD--EDHLSLKEFSELEQSGYYVCYPRGSKPED-ANFYLYLR 201 (204)
T ss_dssp TCTTEEEE--TTEEEETTCCHHHHCEEEEEEETTSCGGG-SSCEEEEE
T ss_pred CCceEecC--CCEEEEeeCCccccCEEEEEEeccCCCCc-eeEEEEEE
Confidence 11111111 235999999 9999999999999999852 34444444
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=152.63 Aligned_cols=164 Identities=14% Similarity=0.163 Sum_probs=116.9
Q ss_pred CCCcccCCCcEEEEeEeccC---------CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV---------PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNI 82 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~---------~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~ 82 (207)
....+.+|+++.|.|.+.+. +.+ .+.|++++..+...... ..+++|.|.+++.+|+| .|+|.+.|.
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~-~v~W~k~~~~~~~~~~~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n~ 112 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDN-VVNWEKIGKTRRPLNRR---VKNGDLWIANYTSNDSHRRYLCTVTTK 112 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTC-EEEEEECSSSCEECSTT---EETTEEEESSCCGGGGGCCEEEEEECT
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCC-eeEEEECCCCccccCce---eecceEEEcCCChHhCCCcEEEEEEeC
Confidence 34467899999999999774 434 89999999877643221 45788999999999999 999999988
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
.|......+ +.+...|...........+..|+.+.|.|.+.+.| .+ .+.|++++..+.......... + ..|.|
T Consensus 113 ~g~~~~~~~-~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~-~i~W~k~~~~l~~~~~~~~~~--~--~~L~I 186 (329)
T 3oq3_B 113 NGDCVQGIV-RSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN-NITWYKNNQELIIDGTKYSQS--G--QNLII 186 (329)
T ss_dssp TSCEEEEEE-EEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCC-EEEEEETTEECCCSSSSEEEE--T--TEEEE
T ss_pred CCceeeEEE-EEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCc-eEEEEECCccCCCCCceEecC--C--CEEEE
Confidence 776433232 24443332221122222345799999999999988 66 999999988764222222222 2 35999
Q ss_pred ecCCCCCCeEEEEEEecC--CCCCccc
Q psy10918 162 SPNSELDYGTLICWGSNK--IGHQRVP 186 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~--~g~~~~~ 186 (207)
.+++.+|+|.|+|.|.|. .|.....
T Consensus 187 ~~v~~~D~G~Y~C~a~n~~~~g~~~~~ 213 (329)
T 3oq3_B 187 HNPELEDSGRYDCYVHYDDVRIKNDIV 213 (329)
T ss_dssp CSCCGGGCEEEEEEEEECCTTSSSCEE
T ss_pred eecChhhCEEEEEEEEecccCCCceeE
Confidence 999999999999999997 6655433
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-24 Score=141.66 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=110.5
Q ss_pred CcccCCCcEEEEeEecc----CCCCcEEEEEECCcccccc----------ccCCeE---ecCCeEEEEecCCCCCeeeEE
Q psy10918 15 DHIKEDSDVYFDCDIVA----VPPVYKVEWRHNNKTLHHN----------IAQGII---MTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~----~~~~~~i~W~~~~~~~~~~----------~~~~~~---~~~~~l~i~~~~~~d~g~Y~C 77 (207)
..+.+|++++|.|.+.+ .+.+ .+.|++++..+... ...+.. ..+.+|.|.+++..|+|.|.|
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~~~-~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELAQT-RIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHC-EEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred EEEEeCCCEEEecccCCCccccccc-EEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 45778999999999853 2444 89999998776310 001111 134689999999999999999
Q ss_pred EEeeeCCCCc----cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEee
Q psy10918 78 VGFNIEGDGE----SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILR 152 (207)
Q Consensus 78 ~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 152 (207)
.+.+..+... ...+.|.|..++..+. ........|+.+.|.|.+. +.|.| .+.|+++|..+...........
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~--~~~~~~~~g~~~~l~C~~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~ 159 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISDFEIPTSNIRRIICSTSGGFPEP-HLSWLENGEELNAINTTVSQDP 159 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCE--EEEEECSSTTEEEEEEEEEEESSCE-EEEEEESSCEECCSEEEEEECT
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCc--eEeccCCCCCeEEEEEecCCccCCC-EEEEEECCEECccccceEEecC
Confidence 9998776543 2356677765432211 1111224578899999995 88887 9999999877543222111222
Q ss_pred cCc-eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 153 SGT-LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 153 ~~~-~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
.+. .....+..+...|.|.|+|.|.|..|..+..
T Consensus 160 ~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~ 194 (201)
T 1dr9_A 160 ETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQT 194 (201)
T ss_dssp TTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEE
T ss_pred CCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeE
Confidence 222 2222334556689999999999998876443
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=146.93 Aligned_cols=173 Identities=12% Similarity=0.172 Sum_probs=114.7
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Cccccc----c------ccCCeE----ecCCeEEEEecCCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLHH----N------IAQGII----MTNQSLVLQRVNRQSA 72 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~~----~------~~~~~~----~~~~~l~i~~~~~~d~ 72 (207)
..++ ...+.+|++++|.|.+.+.+.+ .+.|++. +..... . ...++. ..+.+|.|.+++.+|+
T Consensus 5 ~~~~-~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (213)
T 3mj8_L 5 TQPP-LVSVALGQKATITCSGDKLSDV-YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE 82 (213)
T ss_dssp BCCS-EEEEETTSCEEEEEECSSTTTS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EeCC-cEEEeCCCCEEEEEEcCCCCCc-eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence 3444 6778899999999999987777 9999993 221110 0 011111 1234699999999999
Q ss_pred eeeEEEEeeeCC--CCccceEEEEEE----eCCcccCCCCceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCceeeecc
Q psy10918 73 GNYTCVGFNIEG--DGESNAFFLNVM----YSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNV 145 (207)
Q Consensus 73 g~Y~C~~~~~~~--~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~ 145 (207)
|.|.|.+.+..+ ........|.|. .+|.+..... ......|+.+.|.|.+.+.+ ++..+.|+++|..+....
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 161 (213)
T 3mj8_L 83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPP-SSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGV 161 (213)
T ss_dssp EEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECC-CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred EEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCC-CcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCc
Confidence 999999998776 233556678888 3333322111 11223699999999999864 335999999988754321
Q ss_pred ceeE-EeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 146 AQAH-ILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 146 ~~~~-~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.... ...++. .+.|.|.++..+|+|.|+|.|.|..+...
T Consensus 162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 204 (213)
T 3mj8_L 162 KTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVE 204 (213)
T ss_dssp EECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEE
T ss_pred ccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEE
Confidence 1100 112222 24588999999999999999999876543
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=143.63 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=104.2
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEe-cCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQR-VNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
....+|+++.|.|.+.+ + + .+.|+|++..+... .+.+|.|.+ ++.+|+|.|+|.+.|..|.. +..+.+
T Consensus 9 ~v~~~G~~v~L~C~~~~-~-~-~i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~ 77 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-D-E-NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKA 77 (186)
T ss_dssp EEEEETTEEEEECSSCC-C-T-TCEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECC
T ss_pred EEEeCCcEEEEEEeCCC-C-C-ceEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEE
Confidence 34467999999999877 3 3 59999999887653 246899999 99999999999999887763 323333
Q ss_pred EEEeCCccc---------------------CCC---CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeE
Q psy10918 94 NVMYSPTCK---------------------PHQ---QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH 149 (207)
Q Consensus 94 ~v~~~~~~~---------------------~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 149 (207)
.|....... ... .....+..|+.+.|.|.+ |.| .+.|+++|..+...
T Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p-~i~W~k~g~~i~~~----- 148 (186)
T 1jbj_A 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDK-TIKWLKDGSIISPL----- 148 (186)
T ss_dssp CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCS-CEEEEETTEECCCS-----
T ss_pred EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCC-eEEEEECCEECccc-----
Confidence 332111100 000 001123489999999988 665 99999999875321
Q ss_pred EeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 150 ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 150 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
......|.|.++..+|+|.|+|.|.|..|..
T Consensus 149 ---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 149 ---NATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ---SCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ---CCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 1133458899999999999999999988754
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=143.15 Aligned_cols=177 Identities=19% Similarity=0.219 Sum_probs=114.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC----CcEEEEEECCcccc-----------ccccCCeEe-------cCCeEEEEecCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP----VYKVEWRHNNKTLH-----------HNIAQGIIM-------TNQSLVLQRVNRQ 70 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~----~~~i~W~~~~~~~~-----------~~~~~~~~~-------~~~~l~i~~~~~~ 70 (207)
....+.+|++++|.|.+.+.+. ...+.|++++.... .....+... .+.+|.|.+++..
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 3456789999999999877643 23899999875431 000111111 1467999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEeCCcccCC-CCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeecccee
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH-QQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQA 148 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~ 148 (207)
|+|.|+|.+.+.. .. ...+.|.|..++..+.. ......+..|+.+.|.|.+ .+.|.+ .+.|++++..........
T Consensus 83 D~G~Y~C~~~~~~-~~-~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~-~v~W~~~~~~~~~~~~~~ 159 (222)
T 4i0k_A 83 DEGSYTCFVSIQD-FD-SAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA-EVFWKDGQGVPLTGNVTT 159 (222)
T ss_dssp GCSCEEEEEEECC-CC-CCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC-EEEEECTTSCBCCSEEEE
T ss_pred cCEEEEEEEEeCC-Cc-eEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC-eEEEEcCCCccCCCCcce
Confidence 9999999998753 22 33455666644321111 1112245689999999999 677776 999998443322111111
Q ss_pred EE--eecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 149 HI--LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 149 ~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.. ...+..+.|.|.++..+|.|.|+|.|.|..|....++.+.|.
T Consensus 160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 205 (222)
T 4i0k_A 160 SQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT 205 (222)
T ss_dssp EEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred eEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence 11 223445568889999999999999999999988666555544
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=142.88 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=112.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc---------------ccccCCeE--ecC----CeE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH---------------HNIAQGII--MTN----QSL 62 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~---------------~~~~~~~~--~~~----~~l 62 (207)
+...+....+.+|++++|.|.+.+.+ .+ .+.|+|.. ..+. .....++. .+. .+|
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 82 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDT-YMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL 82 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCc-eEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence 33456677889999999999988743 44 89999822 1110 00011111 111 239
Q ss_pred EEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeC--------------CcccCCCCceeeeeeCCcEEEEEEeccCCC
Q psy10918 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYS--------------PTCKPHQQRVLGVARQEKVNISCEVDANPP 128 (207)
Q Consensus 63 ~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~--------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 128 (207)
.|.+++.+|+|.|.|.+.+..+........|.|... +......+....+.+|+.++|.|.+.+.+.
T Consensus 83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~ 162 (253)
T 3uzq_A 83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD 162 (253)
T ss_dssp EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE
T ss_pred EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc
Confidence 999999999999999999855444334556777642 111112233456779999999999998766
Q ss_pred C---ceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 129 D---VKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 129 ~---~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+ ..+.|++++ ...... ..+......+....|.|.+++.+|+|.|.|.|.|..+
T Consensus 163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~ 231 (253)
T 3uzq_A 163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP 231 (253)
T ss_dssp ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC
Confidence 4 489999853 221100 0122223344556799999999999999999999654
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-25 Score=156.67 Aligned_cols=171 Identities=11% Similarity=0.123 Sum_probs=115.4
Q ss_pred CCcccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
...+.+|+++.|.|.+.+. +.+ .+.|++++..+.......+......|.|.+++..|+|.|+|.+.|..+.. ...+.
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~ 92 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLK 92 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCTTC-EEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEE-EEEEC
T ss_pred eEEECCCCeEEEEEEEcCCCCCC-EEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcE-EEEEE
Confidence 3678899999999999887 555 99999999888754433333334589999999999999999999876644 22333
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEecc----------CCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA----------NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
|.|...+.... .+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+... ........+....|.|.
T Consensus 93 l~v~~~~~~~~-~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~-~i~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~ 169 (317)
T 2y25_A 93 LVDEAFKELMM-EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL-KVNWSHNGSAIRYS-DRVKTGVTGEQIWLQIN 169 (317)
T ss_dssp CSTHHHHHHHH-HHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSC-EEEEEESSSBCCCC-SSEEEEECSSEEEEEEE
T ss_pred EEEecCccccc-cCCceecccCCCeEEEeeccccEEEEEeccCCCCc-EEEEEECCEECCCC-CCeEEeccCCEEEEEEC
Confidence 33332221110 011112234555555555544 4555 99999998875432 33445555666779999
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
+++.+|+|.|+|.|.|..|....+..+
T Consensus 170 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l 196 (317)
T 2y25_A 170 EPTPNDKGKYVMELFDGKTGHQKTVDL 196 (317)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred cCCcccCeeEEEEEEeCCceEEEEEEE
Confidence 999999999999999988876555444
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-23 Score=138.63 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=111.4
Q ss_pred cCCCcccCCCcEEEEeEeccC-------CCCcEEEEEECCcc------ccc---------cccCCeEec------CCeEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-------PPVYKVEWRHNNKT------LHH---------NIAQGIIMT------NQSLV 63 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-------~~~~~i~W~~~~~~------~~~---------~~~~~~~~~------~~~l~ 63 (207)
+....+.+|++++|.|.+.+. +.+ .+.|++++.. +.. ....++... +.+|.
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL-YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCE-EEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCce-EEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 455678899999999998754 344 8999998642 110 001122221 23699
Q ss_pred EEecCCCCCeeeEEEEeeeCCCC---ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC----CCCceEEEEE
Q psy10918 64 LQRVNRQSAGNYTCVGFNIEGDG---ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN----PPDVKFSWTF 136 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~~W~~ 136 (207)
|.+++..|+|.|.|.+.+..+.. ....+.|.|...+..+..... ..+.+|+.+.|.|.+.+. |++ .+.|++
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~~G~~v~L~C~~~~~~~~~p~p-~v~W~~ 163 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL-EPLESGRPTRLSCSLPGSCEAGPPL-TFSWTG 163 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---CCCCTTCCEEEEEECTTCCSCSSCC-EEEEES
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC-ccccCCCeEEEEEEeccCCCCCCCc-eEEEeC
Confidence 99999999999999998764221 124677888864432211111 125689999999999875 555 999999
Q ss_pred cCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
++..... . .....+.|.|..+..+|+|.|+|.|.|..+....+..+.+
T Consensus 164 ~~~~~~~--~-----~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l 211 (214)
T 2zg1_A 164 NALSPLD--P-----ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211 (214)
T ss_dssp STTSSSC--S-----SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred CCCccCC--C-----CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence 8764311 1 1123456889999999999999999998765544544443
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=143.09 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=119.4
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
+....+.+|+.+.|.|.+ .+.+.+ .+.|++++..+... ..+..|.|.+++..|.|.|+|.+.|..+.. +..
T Consensus 89 ~~~~~~~~g~~v~l~C~~~~~~p~~-~v~W~~~g~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~-~~~ 160 (262)
T 3rjd_A 89 VSSRVFTEGEPLALRCHAWKDKLVY-NVLYYRNGKAFKFF------HWNSNLTILKTNISHNGTYHCSGMGKHRYT-SAG 160 (262)
T ss_dssp ESCSEEETTSCEEEEEEEGGGCCCE-EEEEEETTEEEEEE------EECCCEEESSCCGGGCEEEEEEEESSSEEE-EEC
T ss_pred CCCeEEecCCeEEEEEEccCCCCCc-eEEEEECCcccccc------CCCCeEEEEECChhhCEEEEEEEeCCCCcc-ccc
Confidence 345567899999999999 566655 99999999876532 235679999999999999999999876433 556
Q ss_pred EEEEEEeC--CcccCCCCceeeeeeCCcEEEEEEeccCCC-C---ceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 91 FFLNVMYS--PTCKPHQQRVLGVARQEKVNISCEVDANPP-D---VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 91 ~~l~v~~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
+.|.|... +......+ ...+..|+.+.|.|.+.+.|. + ..+.|++++..+.. ......|.|.++
T Consensus 161 ~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~---------~~~~~~L~i~~v 230 (262)
T 3rjd_A 161 ISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG---------RNTSSEYQILTA 230 (262)
T ss_dssp EEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE---------EESCCEEEESSC
T ss_pred eEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc---------cCCCceEEEEEe
Confidence 67777753 22221222 334678999999999999875 3 24788888876431 122346899999
Q ss_pred CCCCCeEEEEEEecCCCCC-ccceEEEEee
Q psy10918 165 SELDYGTLICWGSNKIGHQ-RVPCVFHIVS 193 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~-~~~~~~~v~~ 193 (207)
..+|+|.|+|.|.|..|.. ..+..+.|.+
T Consensus 231 ~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 231 RREDSGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp CGGGCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred chhhCeEEEEEEEcccCceEEecCCeEEEE
Confidence 9999999999999999965 3344455544
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=144.46 Aligned_cols=175 Identities=19% Similarity=0.270 Sum_probs=116.0
Q ss_pred ecCCCcccCCCcEEEEeEec---cCCCCcEEEEEECCccccccc----------------cCCeEe------cCCeEEEE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIV---AVPPVYKVEWRHNNKTLHHNI----------------AQGIIM------TNQSLVLQ 65 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~---~~~~~~~i~W~~~~~~~~~~~----------------~~~~~~------~~~~l~i~ 65 (207)
......+.+|+++.|.|.+. +.+.+ .+.|++++....... ..+... .+.+|.|.
T Consensus 11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 89 (268)
T 3mj6_A 11 SSPQLRVHVGESVLMGCVVQRTEEKHVD-RVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQ 89 (268)
T ss_dssp -CCEEEEETTCCEEECCBCCCSSCCCEE-EEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEEC
T ss_pred CCCceEEecCCcEEEEEEeecCCCCceE-EEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEEC
Confidence 34556788999999999987 55554 899999664332110 012222 12679999
Q ss_pred ecCCCCCeeeEEEEeeeCCCC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe---ccCCCCceEEEEEcCcee
Q psy10918 66 RVNRQSAGNYTCVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV---DANPPDVKFSWTFNNSAE 141 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~~W~~~~~~~ 141 (207)
+++.+|+|.|+|.+.+..+.. ....+.|.|. +. .+....+..|+.+.|.|.+ .+.|.+ .+.|++++...
T Consensus 90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~----~p~~~~v~~G~~v~L~C~~~~~~~~p~~-~v~W~~~~~~~ 162 (268)
T 3mj6_A 90 DVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE----EPRDLRVRVGDTTQMRCSIQSTEEKRVT-KVNWMFSSGSH 162 (268)
T ss_dssp SCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC----CCSEEEEETTCCEEECCBCEESSSSCCC-EEEEEEECTTC
T ss_pred CCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc----CCCccccccCCcEEEEEEecCCCCCCcc-ceEEEecCCCC
Confidence 999999999999999765443 2334445544 22 2334567899999999999 566776 99999954321
Q ss_pred eeccc---------------------eeEEee--cCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 142 TVNVA---------------------QAHILR--SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 142 ~~~~~---------------------~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
..... +..+.. ......|.|.+++.+|+|.|+|.|.|..|.....+.+.|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 163 TEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp SSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 10000 000000 12234699999999999999999999888776666666643
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=140.80 Aligned_cols=177 Identities=15% Similarity=0.252 Sum_probs=113.9
Q ss_pred CCcccCCCcEEEEeEeccCCCC--cEEEEEECCcccccc--------------ccC-----------CeEecCCeEEEEe
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHN--------------IAQ-----------GIIMTNQSLVLQR 66 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~~~~--------------~~~-----------~~~~~~~~l~i~~ 66 (207)
...+..|++++|.|.+.+.+.+ ..+.|+|++..+... ... .....+.+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 3556789999999999876654 248999977543210 000 0011235699999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA 146 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~ 146 (207)
++.+|+|.|.|.+.+..+........+.+..++...... .......+..+.+.|.+.+.+++..+.|++++.......
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~- 167 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEA-QEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT- 167 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEE-CCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE-
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecc-cceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc-
Confidence 999999999999998776554444455555555433222 122234556667777665544334999998876543211
Q ss_pred eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 147 QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 147 ~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
......++. .+.|.|.++..+|+|.|+|.|.|..+....+..+.|.
T Consensus 168 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~ 216 (225)
T 4fmk_A 168 QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLS 216 (225)
T ss_dssp EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEE
Confidence 111222222 3469999999999999999999998877655555443
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=155.40 Aligned_cols=177 Identities=11% Similarity=0.110 Sum_probs=124.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEE----EEEE--CCc--cccccc-------cCCeEe----cCCe--EEEEecCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKV----EWRH--NNK--TLHHNI-------AQGIIM----TNQS--LVLQRVNRQ 70 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i----~W~~--~~~--~~~~~~-------~~~~~~----~~~~--l~i~~~~~~ 70 (207)
+....+.+|+++.|.|.+.+.+.+ .+ .|++ ++. .+.... ..++.. .+++ |.|.+++.+
T Consensus 338 ~~~~~~~~G~~v~l~C~~~~~p~p-~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~ 416 (585)
T 2ocw_A 338 PTVVKGVAGSSVAVLCPYNRKESK-SIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR 416 (585)
T ss_pred CcceEEEeCCcEEEEEecCCCCCc-cEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChh
Confidence 345567799999999999988876 55 7999 886 443210 111111 2233 999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEec----cCCCCceEEEEEcCceeeeccc
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVD----ANPPDVKFSWTFNNSAETVNVA 146 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~~~~~~~~W~~~~~~~~~~~~ 146 (207)
|+|.|+|.+ |..+.. ...+.|.|...+..... +....+..|+.+.|.|.+. +.|.+ .+.|+++|..+.....
T Consensus 417 D~G~Y~C~a-n~~g~~-~~~~~l~V~~~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~-~v~W~k~g~~~~~~~~ 492 (585)
T 2ocw_A 417 DAGFYWCLT-NGDTLW-RTTVEIKIIEGEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKY-WCKWNNTGCQALPSQD 492 (585)
T ss_pred hCEEEEEcc-cCCCcc-ceeEEEEEecCcccccc-CCceeEecCCcEEEEEEecCCCCCCccE-EEEEeecCceeeeccC
Confidence 999999999 777755 55677888765444333 3445678999999999997 45555 9999999876543221
Q ss_pred e------eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc-eEEEEee
Q psy10918 147 Q------AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP-CVFHIVS 193 (207)
Q Consensus 147 ~------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~-~~~~v~~ 193 (207)
. ......+....|.|.++..+|+|.|+|.|.|..|..... +.|.|..
T Consensus 493 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~ 546 (585)
T 2ocw_A 493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE 546 (585)
T ss_pred CCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEe
Confidence 1 112223445689999999999999999999999865433 4454443
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=138.99 Aligned_cols=166 Identities=11% Similarity=0.161 Sum_probs=109.9
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECCc--ccc---------------ccccCCeEe--c----CCeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNK--TLH---------------HNIAQGIIM--T----NQSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~--~~~---------------~~~~~~~~~--~----~~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.+ .+ .+.|+++.. .+. .....++.. + ..+|.|.++
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSY-AMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCEEEecCCcEEEEEEeccccCCCc-eEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 457789999999999998876 34 899999431 110 000112211 1 136999999
Q ss_pred CCCCCeeeEEEEeeeCCC-CccceEEEEEEeCCc--------------ccCCCCceeeeeeCCcEEEEEEeccCCCCceE
Q psy10918 68 NRQSAGNYTCVGFNIEGD-GESNAFFLNVMYSPT--------------CKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~-~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 132 (207)
+.+|+|.|.|.+.+..+. .......|.|...+. .....+....+.+|+.+.|.|.+.+.+++ .+
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v 167 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS-NL 167 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT-CE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc-eE
Confidence 999999999999876211 112344677764421 11112333456789999999999998887 99
Q ss_pred EEEE--cCceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 133 SWTF--NNSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 133 ~W~~--~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|++ ++..+... ..+......+....|.|.+++.+|+|.|+|.|.|..
T Consensus 168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~ 228 (247)
T 2ghw_B 168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW 228 (247)
T ss_dssp EEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred EEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence 9999 44432110 112223334455679999999999999999999854
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=154.72 Aligned_cols=174 Identities=13% Similarity=0.156 Sum_probs=117.8
Q ss_pred CcccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEec------CCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 15 DHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMT------NQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+.+|+.+.|.|.+.+. |.+..+.|++++..+........... ...|.|.+++..| |.|+|.+.|..|..
T Consensus 229 ~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~- 306 (523)
T 2rcj_C 229 SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT- 306 (523)
T ss_pred cccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc-
Confidence 345789999999999886 65548999999977543111111111 2379999999999 99999999988865
Q ss_pred cceEEEEEEeCCcccCCCCceee-eeeCCcEEEEEEeccCCCC---ceEEEEEcCceeeeccceeEE-eecCc---eEEE
Q psy10918 88 SNAFFLNVMYSPTCKPHQQRVLG-VARQEKVNISCEVDANPPD---VKFSWTFNNSAETVNVAQAHI-LRSGT---LSVV 159 (207)
Q Consensus 88 ~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~---~~~~W~~~~~~~~~~~~~~~~-~~~~~---~~~l 159 (207)
.....+.+...|.+....+.... +.+|+.+.|.|.+.+.+++ +.+.|++++..+......... ..++. .+.|
T Consensus 307 ~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L 386 (523)
T 2rcj_C 307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVL 386 (523)
T ss_pred ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEE
Confidence 33445555544543332332222 5789999999999986542 599999998875432211111 11222 2458
Q ss_pred EEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 160 AYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 160 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
.|.++..+|+|.|+|.|.|..+.......+.
T Consensus 387 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 387 TVLHQNWLDGKEYKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred EECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence 8888999999999999999877664443343
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=154.75 Aligned_cols=178 Identities=17% Similarity=0.243 Sum_probs=128.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeeeCCCCccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~~~ 89 (207)
+....+.+|+++.|.|.+.+.+.+ .+.|++ ++..+.... ......++.|.|.+++..|+| .|+|.+.|..+...+.
T Consensus 121 ~~~~~v~~G~~v~l~C~~~~~~~~-~v~W~~~~g~~l~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~ 198 (524)
T 2ec8_A 121 DRSLYGKEDNDTLVRCPLTDPEVT-NYSLKGCQGKPLPKDL-RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198 (524)
T ss_dssp CCCCCEETTSCEEECCCBSCCCCS-CEEEECSSSCCCCSSC-EEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCC
T ss_pred ccceEEEcCCeEEEECcCCCCccc-eEEEEccCCcCcCCCC-ceeECCCccEEEeccchhhCCceEEEEEEECCceEEEE
Confidence 455678899999999999886645 999998 777775432 222344678999999999999 9999999887766566
Q ss_pred eEEEEEE----eCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEe---ecCceEEEEE
Q psy10918 90 AFFLNVM----YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHIL---RSGTLSVVAY 161 (207)
Q Consensus 90 ~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~---~~~~~~~l~i 161 (207)
.+.|.|. .+|.+.. .+....+.+|+.+.|.|.+.+.|.+..+.|++++..+.... ....+. .......|.|
T Consensus 199 ~~~l~V~~~~~~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I 277 (524)
T 2ec8_A 199 KFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTI 277 (524)
T ss_dssp CEECCEECCCCSCCEEEC-SCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEE
T ss_pred EEEEEEEeCCCCCCcEEe-cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEE
Confidence 7788887 3444332 34444678999999999999988874599999987731111 111121 1123457999
Q ss_pred ecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 162 SPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.++..+|+|.|+|.|.|..|.....+.+.|.
T Consensus 278 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 308 (524)
T 2ec8_A 278 SSARVNDSGVFMCYANNTFGSANVTTTLEVV 308 (524)
T ss_dssp SSCCTTTCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCCCHHHCEEEEEEEEecCCceEEEEEEEEe
Confidence 9999999999999999999887666555554
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=151.74 Aligned_cols=163 Identities=10% Similarity=0.105 Sum_probs=119.3
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+.+|+++.|.|.+.+.|.+ .+.|++++..+ ......|.|.+++.+|+|.|+|.+.+..+.. ...+.+.
T Consensus 106 ~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~-~~~~~l~ 175 (363)
T 1wio_A 106 THLLQGQSLTLTLESPPGSSP-SVQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIV 175 (363)
T ss_dssp SSEESBSCEEEEEECCTTCCC-CEEEECSSSCE--------EEESSEEEECSBCGGGCEECEEEEEETTEEE-EECCEEC
T ss_pred eEEecCCCEEEEEEcCCCCCC-eEEEEcCCCcc--------cccceEEEEeeCChhcCCEEEEEEecCCCeE-EEEEEEE
Confidence 467899999999999888877 99999987543 2346789999999999999999998753322 3344566
Q ss_pred EEeCCcccCCCCceeeeeeCCcEEEEEEecc-----CCCCceEEEEEcCceeeec-------cceeEEee----------
Q psy10918 95 VMYSPTCKPHQQRVLGVARQEKVNISCEVDA-----NPPDVKFSWTFNNSAETVN-------VAQAHILR---------- 152 (207)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~~W~~~~~~~~~~-------~~~~~~~~---------- 152 (207)
|...|..+ ....+.+|+.+.|.|.+.+ .|.+ .+.|++++..+... .....+..
T Consensus 176 v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (363)
T 1wio_A 176 VLAFQKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSG-ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250 (363)
T ss_dssp EECCSCSE----EEEEEETBCCEEEECCCCCCCCSSCEEE-EEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCC
T ss_pred EecCCCCC----CceEEecCCEEEEEEEEecccccCCCce-eEEEecCCCCccceEEEEEecCCeeeccccccchhhhcc
Confidence 66544422 3445678999999998877 5665 99999988765431 11122211
Q ss_pred cCceEEEEEecCCCCCCeEEEEEEecC--CCCCccceEEEEe
Q psy10918 153 SGTLSVVAYSPNSELDYGTLICWGSNK--IGHQRVPCVFHIV 192 (207)
Q Consensus 153 ~~~~~~l~i~~~~~~~~g~y~C~~~n~--~g~~~~~~~~~v~ 192 (207)
......|.|.++..+|+|.|+|.|.|. .|..+..+.+.|.
T Consensus 251 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~ 292 (363)
T 1wio_A 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM 292 (363)
T ss_dssp SSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred cCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence 222346999999999999999999999 8876666555554
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-24 Score=151.81 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=121.5
Q ss_pred cCCCcccCC---CcEEEEeE-eccCCCCcEEEEEECCcccccc----ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 12 LNPDHIKED---SDVYFDCD-IVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 12 ~~~~~v~~g---~~v~l~C~-~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.....+.+| +.+.|.|. +.+.|.+ .+.|++++...... ...........|.|.+++..|.|.|+|.+.|..
T Consensus 139 ~~~~~~~~g~~~~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 217 (331)
T 3u83_A 139 QAVLRAKKGQDDKVLVATCTSANGKPPS-VVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHM 217 (331)
T ss_dssp SSCEEECTTCCCCEEEEEEEEEEEBSCC-EEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETT
T ss_pred CCceeecCCCccceEEEEEEecCCcCCc-eEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCC
Confidence 344556777 77999998 7778877 99999964322110 001111112357777889999999999999887
Q ss_pred CCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe-
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS- 162 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~- 162 (207)
+.. +..+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+..+.|++++..+... . .... ..|.|.
T Consensus 218 ~~~-~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~---~-~~~~---~~L~i~~ 289 (331)
T 3u83_A 218 DRF-KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG---V-EAQN---RTLFFKG 289 (331)
T ss_dssp EEE-EEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT---E-EEET---TEEEECS
T ss_pred Ccc-eeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc---c-eecC---cEEEEeC
Confidence 654 557778888777655333333446789999999999999987339999998765322 1 1112 258898
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCC
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHP 199 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~ 199 (207)
++..+|+|.|+|.|.|..|..+.+ +.|.+...+..
T Consensus 290 ~v~~~d~G~Y~C~a~N~~G~~~~~--~~l~V~~~~~~ 324 (331)
T 3u83_A 290 PINYSLAGTYICEATNPIGTRSGQ--VEVNITEAAAL 324 (331)
T ss_dssp CCCGGGCEEEEEEEEETTEEEEEE--EEECCBC----
T ss_pred CCccccCeEEEEEEEeccccceEE--EEEEEeccchh
Confidence 899999999999999999987555 44555454443
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=139.76 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=111.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc-------------ccccCCeEe-----cCCeEEEEec
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH-------------HNIAQGIIM-----TNQSLVLQRV 67 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~-----~~~~l~i~~~ 67 (207)
+.+.+....+.+|++++|.|. .+.+.+ .+.|+++. ..+. .....++.. ...+|.|.++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 80 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCS-EEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCc-cEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence 344566778899999999999 666666 99999952 1110 000112211 1347999999
Q ss_pred CCCCCeeeEEEEeeeCCCC----ccceEEEEEEeCCc-----------ccCCCCceeeeeeCCcEEEEEEeccCCCCceE
Q psy10918 68 NRQSAGNYTCVGFNIEGDG----ESNAFFLNVMYSPT-----------CKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~----~~~~~~l~v~~~~~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 132 (207)
+.+|+|.|.|.+.+..+.. ......|.|...+. .....+....+.+|+.+.|.|.+.+.|.+ .+
T Consensus 81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~-~i 159 (238)
T 2p1y_A 81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD-YF 159 (238)
T ss_dssp CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC-EE
T ss_pred CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC-cE
Confidence 9999999999999765421 12345677775543 11222344557899999999999998886 99
Q ss_pred EEEEcCce--eee-----------ccceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 133 SWTFNNSA--ETV-----------NVAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 133 ~W~~~~~~--~~~-----------~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|++++.. ... ...+..+. .......|.|.+++.+|+|.|+|.|.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 99996421 110 01112221 23345679999999999999999999973
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=143.91 Aligned_cols=167 Identities=18% Similarity=0.269 Sum_probs=112.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc---------cc--ccCCe-----------EecCCeEEEEecCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH---------HN--IAQGI-----------IMTNQSLVLQRVNR 69 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~---------~~--~~~~~-----------~~~~~~l~i~~~~~ 69 (207)
+....+.+|+++.|.|.+.+.+....+.|++++.... .. ...+. ...++.|.|.+++.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~ 86 (231)
T 2pet_A 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV 86 (231)
T ss_dssp CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence 3556788999999999998887523999998765422 00 00011 23335699999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCC--CceeeeeeCCcE-EEEEEe-ccCCCCceEEEEEcCceeeecc
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ--QRVLGVARQEKV-NISCEV-DANPPDVKFSWTFNNSAETVNV 145 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~~-~l~C~~-~~~~~~~~~~W~~~~~~~~~~~ 145 (207)
.|+|.|.|.+.+..+......+.|.|..+|..+... +....+..|+.+ .|.|.+ .+.|.+ .+.|++++..+....
T Consensus 87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~i~W~~~~~~~~~~~ 165 (231)
T 2pet_A 87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-KITWYRNGQRLEVPV 165 (231)
T ss_dssp GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-EEEEEETTEECCCCS
T ss_pred ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-EEEEEECCccCcccc
Confidence 999999999998763333567788888776543222 222234477877 999999 788887 999999987754333
Q ss_pred ---ceeEEee------cCc---eEEEEEecCCCCCCeEEEEEEecC
Q psy10918 146 ---AQAHILR------SGT---LSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 146 ---~~~~~~~------~~~---~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
....+.. .+. .+.|.+.....+|.|.|+|.|.|.
T Consensus 166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 1111111 111 145777755555699999999994
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=144.12 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=112.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCC-----CcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEEe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPP-----VYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQR 66 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-----~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~~ 66 (207)
+...+....+.+|++++|.|.+.+.+. + .+.|++++ ..+. .....++.. . ..+|.|.+
T Consensus 41 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 119 (254)
T 2c1o_A 41 MTQSPLTLSVTIGQPASISCKSSQSLLYSNGKT-YLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISR 119 (254)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCBCSSSCB-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred EEeCCceEEecCCCcEEEEeeccCcccccCCCC-ceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECc
Confidence 334456678899999999999988773 5 89999843 2221 100112211 1 22799999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceee
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAET 142 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~ 142 (207)
++.+|+|.|.|.+.+..+........|.|.. +|.+....+.. ....|..+.|.|.+.+. |++..+.|+++|..+.
T Consensus 120 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 198 (254)
T 2c1o_A 120 VEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ 198 (254)
T ss_dssp CCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEEC
T ss_pred CCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCCh-hhccCCcEEEEEEEecccCCCcEEEEEECCCccc
Confidence 9999999999999877554333344566653 23322211111 12357799999999885 4435799999988654
Q ss_pred ec-cceeEEee--cCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 143 VN-VAQAHILR--SGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 143 ~~-~~~~~~~~--~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.. ........ ++. .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 199 ~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 199 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred CcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 32 11111111 111 3579999999999999999999987654
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=142.21 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=112.8
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcc-----ccc-------cccCCeEe--c--CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT-----LHH-------NIAQGIIM--T--NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~-----~~~-------~~~~~~~~--~--~~~l~i~~~~~~ 70 (207)
.+...+....+.+|++++|.|.+.+.+.+ .+.|++++.. +.. ....++.. . ..+|.|.+++.+
T Consensus 14 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~-~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 92 (276)
T 3auv_A 14 QMTQSPSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE 92 (276)
T ss_dssp CEEEECSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEeCCCeEEEcCCCCEEEEeEcCCCCCC-cEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence 44555677788999999999999888766 8999996421 100 00112211 1 126999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEeCCc-------------ccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEE
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPT-------------CKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTF 136 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~ 136 (207)
|+|.|.|.+.+..+........|.|...+. .....+....+.+|+.+.|.|.+.+.++ .+.+.|++
T Consensus 93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 172 (276)
T 3auv_A 93 DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR 172 (276)
T ss_dssp GCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred hCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence 999999999987554334445677765432 1111223345678999999999998763 24999999
Q ss_pred cC--ceeeec----------------cceeEEeec--CceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 137 NN--SAETVN----------------VAQAHILRS--GTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 137 ~~--~~~~~~----------------~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
++ ...... ..+..+..+ .....|.|.+++.+|+|.|.|.|.|.
T Consensus 173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 64 221100 011222221 23457999999999999999999997
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-23 Score=141.00 Aligned_cols=179 Identities=16% Similarity=0.223 Sum_probs=111.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCc----EEEEEECCcccccc---------------ccCCe-----EecCCeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVY----KVEWRHNNKTLHHN---------------IAQGI-----IMTNQSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~----~i~W~~~~~~~~~~---------------~~~~~-----~~~~~~l~i~~~ 67 (207)
+....+.+|++++|.|.+.+.+.+. .+.|++++...... ....+ ...+.+|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 3445678999999999997766541 49999974332110 00000 011345999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeec--
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVN-- 144 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~-- 144 (207)
+..|+|.|.|.+.+..+.. ...+.|.|..+|.+..... .....|..+.|.|.+.+ .|.+..+.|++++..+...
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp CGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 9999999999998866543 4467788887776443222 22346778889999998 5665599999998643211
Q ss_pred ----cceeEEe--ecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 145 ----VAQAHIL--RSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 145 ----~~~~~~~--~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
....... .++. .+.|.+.....+|.|.|+|.|.|..+.......+.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 0001111 1222 24577888888899999999999988765555555554
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=139.24 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=110.8
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--ccccc--------------cccCCeEec------CCeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLHH--------------NIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~~--------------~~~~~~~~~------~~~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+.+ .+ .+.|++++ ..+.. ....++... ..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 8 GPGLVRPSETLSLTCTVSGFSLTSF-SVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp CCSEECTTSEEEEEEEEESSCTTTS-CCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCccccCCceEEEEEEEecccCCCc-cEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 445789999999999998774 44 89999962 21110 001122211 2379999999
Q ss_pred CCCCeeeEEEEeeeCCC--------CccceEEEEEEeCCc--------------ccCCCCceeeeeeCCcEEEEEEeccC
Q psy10918 69 RQSAGNYTCVGFNIEGD--------GESNAFFLNVMYSPT--------------CKPHQQRVLGVARQEKVNISCEVDAN 126 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~--------~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~ 126 (207)
.+|+|.|.|.+.+..|. .......|.|...+. .....+....+.+|+.+.|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 99999999999987431 112345677775431 11112334456789999999999998
Q ss_pred CCCceEEEEE--cCceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 127 PPDVKFSWTF--NNSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 127 ~~~~~~~W~~--~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+++ .+.|++ ++..+... ..+......+....|.|.+++.+|+|.|.|.|.|..
T Consensus 167 ~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 167 INN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 876 999999 44432110 112222223445679999999999999999999964
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-24 Score=153.91 Aligned_cols=173 Identities=15% Similarity=0.257 Sum_probs=124.7
Q ss_pred cccCCCcEEEEeE-----eccCCCCcEEEEEECCccccccccCCeEecC-CeEEEEecCCCCCeeeEEEEeeeCCCC---
Q psy10918 16 HIKEDSDVYFDCD-----IVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-QSLVLQRVNRQSAGNYTCVGFNIEGDG--- 86 (207)
Q Consensus 16 ~v~~g~~v~l~C~-----~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~Y~C~~~~~~~~~--- 86 (207)
.+.+|+++.|.|. +.+.|.+ .+.|++++..+...........+ ..|.|.+++..|+|.|+|.+.|..+..
T Consensus 131 ~~~~g~~v~l~C~~~~~~~~g~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 209 (339)
T 3o4o_C 131 ILTLSTSGVLVCPDLSEFTRDKTDV-KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN 209 (339)
T ss_dssp EEETTSCEEEECCSCTTTCCSSSCC-CBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCE
T ss_pred EEECCCCEEEEecCCcccccCCCCc-eEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEE
Confidence 5678999999999 6777777 99999999988764333332322 479999999999999999999887642
Q ss_pred ccceEEEEEEeC-----CcccCCCCceeeeeeCCcEEEEEEe---ccCCCCceEEEEEcCceeeec--------cceeEE
Q psy10918 87 ESNAFFLNVMYS-----PTCKPHQQRVLGVARQEKVNISCEV---DANPPDVKFSWTFNNSAETVN--------VAQAHI 150 (207)
Q Consensus 87 ~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~~W~~~~~~~~~~--------~~~~~~ 150 (207)
....+.|.|... |.+.. .+....+..|+.+.|.|.+ .+.|.+..+.|++++..+... ......
T Consensus 210 ~~~~~~l~V~~~~~~~~P~i~~-~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~ 288 (339)
T 3o4o_C 210 ITRSIELRIKKKKEETIPVIIS-PLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288 (339)
T ss_dssp EEEEEEEEEECCCCCCCCEECC-CSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC
T ss_pred EEEEEEEEEEcCCCCCCCEEec-CCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEe
Confidence 244667777743 23322 2344456789999999999 888844499999988764321 111112
Q ss_pred eecCc---eEEEEEecCCCCCC-eEEEEEEecCCCCCccceEEE
Q psy10918 151 LRSGT---LSVVAYSPNSELDY-GTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 151 ~~~~~---~~~l~i~~~~~~~~-g~y~C~~~n~~g~~~~~~~~~ 190 (207)
..++. .+.|.|.++..+|. |.|+|.|.|..|..+..+.+.
T Consensus 289 ~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~ 332 (339)
T 3o4o_C 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332 (339)
T ss_dssp CCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCC
T ss_pred cccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhh
Confidence 22232 12589999999997 999999999999887665543
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=152.71 Aligned_cols=167 Identities=16% Similarity=0.246 Sum_probs=123.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC--eEecCCeEEEE----ecCCCCCeeeEEEEeeeCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQ----RVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~--~~~~~~~l~i~----~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..+....... ....+++|.|. +++.+|+|.|+|.+.|..|.
T Consensus 24 ~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~ 102 (404)
T 3p3y_A 24 AKDHIVDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102 (404)
T ss_dssp CTTCEECSSSCCCCCEEECCSSCC-EEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCE
T ss_pred CccEEEcCCCCEEEEEEecCCCCC-eEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCe
Confidence 456678899999999999998877 999999998775432222 22345566665 78889999999999988877
Q ss_pred CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
..+..+.|.|..+|...........+.+|+.+.|.|.+ .+.|.+ .+.|++++..............++ .|.|.++
T Consensus 103 ~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~---~l~i~~v 178 (404)
T 3p3y_A 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP-VIFWMSSSMEPITQDKRVSQGHNG---DLYFSNV 178 (404)
T ss_dssp EEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCC-EEEEECTTSCBCCCCSSEEECTTS---CEEESSC
T ss_pred EeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCC-eEEEeCCCccccCCCCcEEEcCCC---cEEEEee
Confidence 65567778888777655444444567899999999999 666776 999999875432222222222233 3889999
Q ss_pred CCCC-CeEEEEEEecCCCCC
Q psy10918 165 SELD-YGTLICWGSNKIGHQ 183 (207)
Q Consensus 165 ~~~~-~g~y~C~~~n~~g~~ 183 (207)
..+| +|.|+|.|.|..+..
T Consensus 179 ~~~d~~G~Y~C~a~n~~~~~ 198 (404)
T 3p3y_A 179 MLQDMQTDYSCNARFHFTHT 198 (404)
T ss_dssp CSGGGSSCBEEEEECTTTCC
T ss_pred eeccCCcceEEEEEeccccc
Confidence 9999 599999999987753
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=144.97 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=108.2
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE---ecCCeEEEEecCCCCCeeeEEEEeeeCCCC----cc
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG----ES 88 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~----~~ 88 (207)
.+.+|++++|.|.+.+. .+ .+.|++++..+......... .....|.|.+++.+|+|.|+|.+.|..+.. .+
T Consensus 129 ~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s 206 (316)
T 3vh8_G 129 LVKSGERVILQCWSDIM-FE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPS 206 (316)
T ss_dssp EEETTCCEEEEEEESSC-CS-EEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCC
T ss_pred ccCCCCeEEEEEcCCCC-Cc-EEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCC
Confidence 37889999999998543 34 89999999876532111111 134579999999999999999999877642 24
Q ss_pred ceEEEEEEeCCccc--CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 89 NAFFLNVMYSPTCK--PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 89 ~~~~l~v~~~~~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
..+.|.|...+..+ ...+. ..+.+|+.+.|.|.+.. +.+ .+.|+++|..+.................|.|.+++
T Consensus 207 ~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~- 282 (316)
T 3vh8_G 207 DPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSRS-SYD-MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT- 282 (316)
T ss_dssp CCEEEEEECSSCCCEEEEESC-SCCCTTSCCEEEEEESS-CCS-EEEEEETTSSCCEEEECEECTTSCEEEEEECC----
T ss_pred CCEEEEecCCCCCCeEEeCCC-CeecCCCcEEEEEECCC-CCc-EEEEEECCCcCCCceeceeccCCceeEEEEcCCcC-
Confidence 55677776432211 11111 24578999999999974 555 99999998765432211111111223578898888
Q ss_pred CCCeEEEEEEecCCCC---CccceEEEEeecccC
Q psy10918 167 LDYGTLICWGSNKIGH---QRVPCVFHIVSAVTF 197 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~---~~~~~~~~v~~~~~~ 197 (207)
|+|.|+|.|.|..+. ...+..+.+.+.++|
T Consensus 283 -D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 283 -HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp ---CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred -CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 999999999997653 123444566665554
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=150.02 Aligned_cols=163 Identities=14% Similarity=0.193 Sum_probs=123.3
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecCCeEEEEecCCCC------CeeeEEEEeeeCCCCc
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQS------AGNYTCVGFNIEGDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~Y~C~~~~~~~~~~ 87 (207)
..+.+|+.++|.|.+.+.|.+ .+.|++ ++..+...........+++|.|.+++..| +|.|+|.+.|..|...
T Consensus 14 ~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~ 92 (388)
T 2v5m_A 14 IDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92 (388)
T ss_dssp EEEETTTCEEEECEEEEESCC-EEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEE
T ss_pred EEEEcCccEEEEEECCCCCCC-EEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEE
Confidence 446789999999999988887 999999 78777654444444567789999999887 9999999999877654
Q ss_pred cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcCceeeecc----ceeEEeecCceEEEEE
Q psy10918 88 SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNV----AQAHILRSGTLSVVAY 161 (207)
Q Consensus 88 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i 161 (207)
+..+.+.+..+|.+... +....+.+|+.+.|.|.+.+.++ ...+.|++++..+.... .+.....++ .|.|
T Consensus 93 s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~L~i 168 (388)
T 2v5m_A 93 SRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHI 168 (388)
T ss_dssp CCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTS---CEEE
T ss_pred ecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCC---cEEE
Confidence 56777888776655432 33456789999999999988754 25999999987653221 112222222 4899
Q ss_pred ecCCCCCC-eEEEEEEecCCCC
Q psy10918 162 SPNSELDY-GTLICWGSNKIGH 182 (207)
Q Consensus 162 ~~~~~~~~-g~y~C~~~n~~g~ 182 (207)
.+++.+|. |.|+|.+.|..+.
T Consensus 169 ~~v~~~d~~G~Y~C~~~n~~~~ 190 (388)
T 2v5m_A 169 REVGPEDGYKSYQCRTKHRLTG 190 (388)
T ss_dssp SSCCGGGGGCCEEEEEEETTTC
T ss_pred ecCCccccCeeEEEEeccCCCC
Confidence 99999999 9999999998643
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=144.78 Aligned_cols=163 Identities=10% Similarity=0.170 Sum_probs=117.7
Q ss_pred CCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 14 PDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
...+.+|+++.|.|... +.|.+ .+.|++++..+...........+ ..|.|.+++.+|+|.|+|.+.|..|... +
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~-~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s 86 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKS-EFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--S 86 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTC-CEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--E
T ss_pred eEEEecCCeEEEEEEEeCCCCCc-EEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--E
Confidence 45577899999888875 45666 99999999988754433333333 5799999999999999999998877442 4
Q ss_pred EEEEEEe------------CCcccCCCCceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEee--cCc
Q psy10918 91 FFLNVMY------------SPTCKPHQQRVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILR--SGT 155 (207)
Q Consensus 91 ~~l~v~~------------~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~ 155 (207)
+.+.|.. +|.+.........+.+|+.+.|.|.+. +.|.+ .+.|++++..+... ....+.. ...
T Consensus 87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~i~~~-~~~~~~~~~~~~ 164 (312)
T 2y23_A 87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEG-PKYKMHIDRNTG 164 (312)
T ss_dssp EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSC-EEEEEETTEEECSS-SSCEEEEETTTT
T ss_pred EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCC-EEEEEECCEECeeC-CcEEEEEccCCC
Confidence 4455442 444333222245677999999999999 67776 99999998875432 2222322 245
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...|.|.+++.+|+|.|+|.|.|..+
T Consensus 165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~ 190 (312)
T 2y23_A 165 IIEMFMEKLQDEDEGTYTFQLQDGKA 190 (312)
T ss_dssp EEEEEESCCCGGGCEEEEEEEESSSC
T ss_pred EEEEEEccCCcccCEeEEEEEEeCCc
Confidence 56799999999999999999987443
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=151.98 Aligned_cols=167 Identities=14% Similarity=0.197 Sum_probs=105.7
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC---CeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
..++.+|+++.|.|.+.+.|.+ .+.|++++..+..... ....+ .+|.|.+++.+|+|.|.|.+.|..|.. ...
T Consensus 57 ~v~V~~G~~v~L~C~v~g~P~p-~i~W~~~~~~l~~~~~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~ 132 (423)
T 3qs7_E 57 AVEVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPH--FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TIL 132 (423)
T ss_dssp EEEECSSCCEEEEEECSCCSSC-EEEEEETTEEECCCCB--C-----CEEEEEESSCCSSSCSEEEEEEEC--CEE-EEE
T ss_pred cEEEecCCcEEEEEEEEcCCCC-eEEEEECCCccCccce--eccccceEEEEEEeecCcccCEEEEEEEEcCCCcE-EEE
Confidence 6788999999999999998877 9999999877654211 11111 259999999999999999999987755 446
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce--eEEeecCceEEEEEecCCCCC
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~ 168 (207)
+.|.|..+|......+ .....|..+.|.|.+.|.|.| .+.|++++......... ..+.... ..+ ...|
T Consensus 133 ~~l~V~~~p~~~~~~p--~~~~~~~~~~L~C~a~G~P~P-~i~W~k~~~~~~~~~~~~~~~~~~~~--~~l-----~~~d 202 (423)
T 3qs7_E 133 FTVSIRNTLLYTLRRP--YFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEE--KVL-----HELF 202 (423)
T ss_dssp EEEEEC-----CEEEE--EEEECSSSSCEEEEEEESSCC-EEEEEEC-------------CEEECC--SEE-----CCCC
T ss_pred EEEEEecCccccccCC--cEeccCCceEEEEEEeeecCC-eEEEEECCCCCccccccccccccccc--eEE-----eccc
Confidence 6777775554321111 223467888999999999998 99999987643211000 0011111 111 5689
Q ss_pred CeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
+|.|+|.|.|..|.... ..+.+.+..
T Consensus 203 ~G~Y~C~A~N~~G~~~~-~~~~l~V~~ 228 (423)
T 3qs7_E 203 GTDIRCCARNELGRECT-RLFTIDLNQ 228 (423)
T ss_dssp SSCEEEEEECSSCEEEE-ECEEEESSS
T ss_pred CeEEEEEEEcCCCCcce-eeEEEEEec
Confidence 99999999999986533 223444433
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=161.75 Aligned_cols=174 Identities=16% Similarity=0.281 Sum_probs=129.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe---cCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+.+.|.|.+.+.+.+..+.|++++..+.......... ....|.|.+++..|+|.|+|.+.|..|.. ..
T Consensus 627 ~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~ 705 (816)
T 3dmk_A 627 EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ-QF 705 (816)
T ss_dssp CSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEE-EE
T ss_pred cccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccE-EE
Confidence 345678899999999997765555999999998886533222211 13469999999999999999999988866 55
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec-----cceeEEeecCceEEEEEecC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN-----VAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~ 164 (207)
.+.|.|..+|.+.. .+....+..|+.+.|.|.+.|.|+| .+.|++++..+... ........++ .|.|.++
T Consensus 706 ~~~l~V~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v 780 (816)
T 3dmk_A 706 TTPLNVYVPPRWIL-EPTDKAFAQGSDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEG---TLHVDNI 780 (816)
T ss_dssp EEEECEEEEEEEEE-CCCCEEEETTCCEEEECEEEEESCC-EEECCEECSSSTTCCBCCCCBTTEEEETT---EEEECSC
T ss_pred EEEEEEEeCCceee-ecccceecCCCcEEEEEEEecCCCC-eEEEEecCCCCCccccccccCCCEEecCC---EEEECcC
Confidence 67788888876543 3334557789999999999999998 99999987542110 0001111122 5899999
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.+|+|.|+|.|.|..|....++.+..+
T Consensus 781 ~~~d~G~Y~C~a~N~~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 781 QKTNEGYYLCEAINGIGSGLSAVIMISV 808 (816)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred ChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence 9999999999999999998777655444
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=156.16 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=108.7
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
...+.+|+.+.|.|.+.+.|.+ .+.|++++..+..... ....+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus 335 ~~~v~~G~~v~L~C~~~g~P~p-~i~W~k~g~~l~~~~~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~-~~~~~L 410 (527)
T 3qs9_E 335 DYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTL 410 (527)
T ss_dssp EECCCTTCCCCEEEEEEEESCC-EEEEEETTEEEECBCC--BCSSSSEEEEECCCTTCCSCEEEEEEETTEEE-EEEEEE
T ss_pred cEEEcCCCeEEEEEEEEecCCC-EEEEEECCEECcCCcc--cccCCcEEEEecCCcccCEEEEEEEEeCCCcE-EEEEEE
Confidence 3567889999999999999988 8999999998865432 22356689999999999999999999988866 446788
Q ss_pred EEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc----------eeEEeecCceEEEEEec
Q psy10918 94 NVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA----------QAHILRSGTLSVVAYSP 163 (207)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~ 163 (207)
.|..+|.+.... ....|.|.+.|.|.| .+.|++++........ ............+.+.-
T Consensus 411 ~V~~~P~i~~~~---------~~~~l~C~a~g~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 480 (527)
T 3qs9_E 411 NIRRKPQVLAEA---------SASQASCFSDGYPLP-SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480 (527)
T ss_dssp C--CCCEEEECC---------CCE---EEEECSSCC-EEEEECCC-----CCCCCCCCEEEC---------CEEEEECCC
T ss_pred EEecCCeEEEeC---------CCCEEEEEEEEEcCC-eEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEE
Confidence 888777654221 123579999999998 9999987654311000 00000111112223333
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
...+|+|.|+|.|.|..|..+..+.|.
T Consensus 481 ~~~~d~G~Y~C~A~N~~G~~~~~~~L~ 507 (527)
T 3qs9_E 481 SEAIKGFLVKCCAYNSLGTSCETILLN 507 (527)
T ss_dssp CCSSCSCEEEEEEECSSCEEEEEEEC-
T ss_pred EEcCCCEEEEEEEEeCCCCceeEEEEe
Confidence 345699999999999999886665553
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=149.81 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=116.7
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc--cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH--NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
...+.+|+++.|.|.+.+.++...+.|++++..+.. ....++...++.|.|.+++.+|+|.|+|.+.|..+.. ...+
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~ 92 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKI 92 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCC-CEEC
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEE-EEEE
Confidence 567789999999999988873339999999865432 2233444556789999999999999999999887654 2233
Q ss_pred EEEEEe-CCcccCCC--CceeeeeeCCcEEEEEEe------ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 92 FLNVMY-SPTCKPHQ--QRVLGVARQEKVNISCEV------DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 92 ~l~v~~-~~~~~~~~--~~~~~~~~g~~~~l~C~~------~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
.+.+.. +|.+.... .....+..|+.+.|.|.+ .+.|.+ .+.|++++..+...... ....+. .|.|.
T Consensus 93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~-~i~W~k~~~~l~~~~~~--~~~~~~--~L~i~ 167 (315)
T 1itb_B 93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKPLLLDNIH--FSGVKD--RLIVM 167 (315)
T ss_dssp CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCC-CCEEEETTEECCCCSSS--EEEETT--EEEES
T ss_pred EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCC-EEEEEECCEECCCccce--EeecCc--eEEEE
Confidence 444443 23222111 122346789999999998 777876 99999998775432211 222222 58999
Q ss_pred cCCCCCCeEEEEEEe-cCCCCC
Q psy10918 163 PNSELDYGTLICWGS-NKIGHQ 183 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~-n~~g~~ 183 (207)
+++.+|+|.|+|.|. |..|..
T Consensus 168 ~v~~~d~G~Y~C~a~~n~~g~~ 189 (315)
T 1itb_B 168 NVAEKHRGNYTCHASYTYLGKQ 189 (315)
T ss_dssp SCCGGGCEEEEEEEEEEETTEE
T ss_pred eceehhCcEEEEEEEcCCCCcE
Confidence 999999999999999 777765
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=137.00 Aligned_cols=168 Identities=16% Similarity=0.245 Sum_probs=108.0
Q ss_pred cCCCcccCCCcEEEEeEeccC--CCCcEEEEEECC--ccccc--------------cccCCeEec------CCeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNN--KTLHH--------------NIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~--~~~~~--------------~~~~~~~~~------~~~l~i~~~ 67 (207)
+....+.+|++++|.|.+.+. +.+ .+.|++.. ..... ....++... ..+|.|.++
T Consensus 15 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 93 (257)
T 3gkz_A 15 SGPSLVKPSQTLSLTCSVTGDSVTSG-YWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSV 93 (257)
T ss_dssp ECCSEECTTCCEEEEEEEEESCCSSC-EEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCeEEcCCCcEEEEEEEEcccccce-EEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCC
Confidence 355668899999999999874 344 89999943 11100 001111111 126999999
Q ss_pred CCCCCeeeEEEEeeeCCCC---ccceEEEEEEeC-------------CcccCCCCceeeeeeCCcEEEEEEeccCCCCce
Q psy10918 68 NRQSAGNYTCVGFNIEGDG---ESNAFFLNVMYS-------------PTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~---~~~~~~l~v~~~-------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 131 (207)
+.+|+|.|.|.+.+..+.. ......|.|..+ +......+....+.+|+.++|.|.+.+.+.+..
T Consensus 94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 173 (257)
T 3gkz_A 94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSH 173 (257)
T ss_dssp CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGG
T ss_pred ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceE
Confidence 9999999999998752111 123456777654 111122234456779999999999998776558
Q ss_pred EEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 132 FSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 132 ~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.|++. +...... ..+......+....|.|.+++.+|+|.|.|.|.|..
T Consensus 174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 999984 2222110 012222334455679999999999999999999854
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-23 Score=138.43 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=112.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc---c-------cccCCeEe----cCCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH---H-------NIAQGIIM----TNQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~---~-------~~~~~~~~----~~~~l~i~~~~~~d 71 (207)
+...+....+.+|++++|.|.+.+.+.+ .+.|++... ... . ....++.. ...+|.|.+++.+|
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3r06_A 4 MTQSPSSLPASLGDRVTINCQASQDISN-YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED 82 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eEeCCCEEEecCCCcEEEEEEeCCCcCc-eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence 4455667788999999999999988766 999998431 110 0 00111111 12369999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEE---eCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeecc-c
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVM---YSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNV-A 146 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~ 146 (207)
+|.|.|.+.+..+........|.|. .+|.+.... .......|..+.|.|.+.+.++ ++.+.|+++|..+.... .
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~-~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 161 (213)
T 3r06_A 83 IGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFP-PSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ 161 (213)
T ss_dssp CSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC-CCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred CEEEEEecccCCceEEcCCceEEEeccCCCceeeeeC-CCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence 9999999987655444445667773 233322211 1112335778999999998654 45999999987754321 1
Q ss_pred eeEEee--cCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 147 QAHILR--SGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 147 ~~~~~~--~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
...... ++. .+.|.+.....+|+|.|+|.|.|.....
T Consensus 162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 111111 122 2357788888889999999999976544
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=151.84 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=127.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCC--CcEEEEEECCcccc-----c-------cccCCeEe----cC--CeEEEEecCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP--VYKVEWRHNNKTLH-----H-------NIAQGIIM----TN--QSLVLQRVNRQS 71 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~~~~~~-----~-------~~~~~~~~----~~--~~l~i~~~~~~d 71 (207)
+....+.+|+++.|.|.+.+.+. ...+.|+|++..+. . ....++.. .+ ..|.|.+++.+|
T Consensus 7 P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D 86 (585)
T 2ocw_A 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86 (585)
T ss_pred cceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCccc
Confidence 44567889999999999987643 23799999886431 0 00011111 12 259999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee---c----
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV---N---- 144 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~---~---- 144 (207)
+|.|+|.+.+..+.. +..+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+.+++..+.|++++..... .
T Consensus 87 ~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~-~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~ 164 (585)
T 2ocw_A 87 SGRYKCGLGINSRGL-SFDVSLEVSQGPGLLN-DTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY 164 (585)
T ss_pred CEEEEEEcccCCCCc-eEEEEEEEecCccccC-CCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcc
Confidence 999999999877654 5567888888776543 344556789999999999997765458999998754211 0
Q ss_pred -----cceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 145 -----VAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 145 -----~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
..+..+..++. ...|.|.+++.+|+|.|+|.|.|..|.....+.+.|.
T Consensus 165 ~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 220 (585)
T 2ocw_A 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220 (585)
T ss_pred cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEc
Confidence 11223333232 3469999999999999999999999887666666554
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=140.06 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=113.9
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
..+.+|+++.|.|.+. .|.+ .+.|++++ ..+.. .. .....+. ...|+|.|+|.+.+..+...+..+.
T Consensus 105 ~~v~~G~~v~l~C~~~-~p~~-~v~w~~~~~~~~~~~----~~-~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~ 173 (289)
T 3mjg_X 105 IFLTEITEITIPCRVT-DPQL-VVTLHEKKGDVALPV----PY-DHQRGFS----GIFEDRSYICKTTIGDREVDSDAYY 173 (289)
T ss_dssp EEESSCCCEEECCCBS-CTTS-CEEEEESSCCSCCCC----CE-ETTTEEE----ECCCSSEEEEEEEETTEEEECCCEE
T ss_pred EEeecCCeEEEEeEcC-CCCc-eEEEEeCCCCCccce----ee-cCCcCee----eeccCcEEEEEEEeCCceeeeeeEE
Confidence 3477899999999998 5555 88888864 33221 01 1111121 3679999999998766555455566
Q ss_pred EEEEe--CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee----cCceEEEEEecCCC
Q psy10918 93 LNVMY--SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR----SGTLSVVAYSPNSE 166 (207)
Q Consensus 93 l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~ 166 (207)
|.|.. +|.+. ..+....+.+|+.+.|.|.+.+.|.+ .+.|++++.............. ......|.|.++..
T Consensus 174 l~v~~~~~p~i~-~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 251 (289)
T 3mjg_X 174 VYRLQVSSINVS-VNAVQTVVRQGENITLMCIVIGNEVV-NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251 (289)
T ss_dssp EEECCCCCCCCE-EEESCSEEETTSCEEEEEEEESCSSB-EEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCS
T ss_pred EEecCCCCCCcE-EeCCcceeEcCCCEEEEEEECCCCCc-ceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccCh
Confidence 66665 23222 22233457799999999999998876 9999987664322111111111 12346799999999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
+|+|.|+|.|.|..|....++.+.|...+
T Consensus 252 ~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 252 EDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp SCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred hhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 99999999999999999888777776543
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=136.42 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=111.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc----c------cccCCeEe--c--CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH----H------NIAQGIIM--T--NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~----~------~~~~~~~~--~--~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|.+.+.+.+ .+.|+++.. .+. . ....++.. . ..+|.|.+++.+|
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 4 LTQSPATLSVTPGNSVSLSCRASQSIGN-NLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEEcCCeEEEcCCCcEEEEEEeCCCCCc-eEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 4456677788999999999999888766 999999531 110 0 00112221 1 2369999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEeCCc------------ccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcC
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPT------------CKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNN 138 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~ 138 (207)
+|.|.|.+.+..+........|.|..++. .....+....+.+|+.++|.|.+.+.+. ...+.|++++
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~ 162 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF 162 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence 99999999876543223445677765442 1111112234678999999999998762 2489999853
Q ss_pred --ceeee---------------ccceeEEee--cCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 139 --SAETV---------------NVAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 139 --~~~~~---------------~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
..... ...+..+.. .+....|.|.+++.+|+|.|.|.|.|.
T Consensus 163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 22210 011122221 234567999999999999999999985
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=140.30 Aligned_cols=170 Identities=11% Similarity=0.134 Sum_probs=109.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCC--CcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEEecCCCCCe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP--VYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQRVNRQSAG 73 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~~~~~~d~g 73 (207)
+....+.+|++++|.|.+.+.+. ...+.|++++ ..+. .....++.. . ..+|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 56677899999999999988763 2389999963 2220 000112211 1 237999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeecccee
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQA 148 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~ 148 (207)
.|.|.+.+..+........|.|.. +|.+....+. .....|+.+.|.|.+.+.++ +..+.|+++|..+.......
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 165 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT 165 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecC
Confidence 999999976653333345566642 2332221111 11236889999999998644 34899999987654321111
Q ss_pred --EEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 149 --HILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 149 --~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
....++. .+.|.|.....+|+|.|+|.|.|....
T Consensus 166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 166 QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred CceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 1111222 346888888889999999999997654
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-22 Score=136.75 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=111.6
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc------------ccccCCeEec----CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH------------HNIAQGIIMT----NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~------------~~~~~~~~~~----~~~l~i~~~~~~ 70 (207)
.+...+....+.+|++++|.|.+.+.+.+ .+.|++...... .....++... ..+|.|.+++.+
T Consensus 6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 6 VLIQSTSSLSASLGDRVTISCRASQDIRN-YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CEECSCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEecCCEEEeeCCCcEEEEEEecccCCc-eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 34455666778899999999999998887 999999531100 0001111111 126999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEeCC------------------cccCCCCceeeeeeCCcEEEEEEeccCC--CCc
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSP------------------TCKPHQQRVLGVARQEKVNISCEVDANP--PDV 130 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~ 130 (207)
|+|.|.|.+.+..+........|.|..++ ......+....+.+|+.+.|.|.+.+.+ .+
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~- 163 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS- 163 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS-
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC-
Confidence 99999999987655433444567776531 1111223334567899999999998866 44
Q ss_pred eEEEEEc--Cceeeecc----------------ceeEEee--cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 131 KFSWTFN--NSAETVNV----------------AQAHILR--SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 131 ~~~W~~~--~~~~~~~~----------------~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.+.|+++ +..+.... .+..+.. ......|.|.+++.+|+|.|.|.|.+
T Consensus 164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 9999997 43321110 1112221 13345799999999999999999997
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=143.54 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=117.6
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
.......+.+|++++|.|.+.+ .+.|++++..... ......+..|.|.+++..|+|.|+|.+.+..+.. +.
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~ 79 (289)
T 3ejj_X 9 PSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWT---LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAG-ST 79 (289)
T ss_dssp SCSSEEEECTTCCEEEEEECSS-----CCEEECSCSSSSE---ECCCSSCCEEEESSCCGGGCEEEEEECCC------CE
T ss_pred CCCceEEECCCCCEEEEEEeCC-----cEEEccCCCceEE---EeccCCccEEEEeeeccccCEEEEEEEeccCCcc-ee
Confidence 3445667889999999999866 4899987654321 1112235689999999999999999998877654 56
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.+.|.|..++......+....+.+|+.+.|.|.+.+.+.+..+.|++.+...............+ .|.|.++..+|+
T Consensus 80 ~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~ 156 (289)
T 3ejj_X 80 TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDS 156 (289)
T ss_dssp EEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGC
T ss_pred EEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---CEEEeecccccC
Confidence 77788887665433344555678999999999999877664599987544332222222232222 388999999999
Q ss_pred eEEEEEEe-cCCCCCccceEEEEe
Q psy10918 170 GTLICWGS-NKIGHQRVPCVFHIV 192 (207)
Q Consensus 170 g~y~C~~~-n~~g~~~~~~~~~v~ 192 (207)
|.|+|.|. |..+..+....+.|.
T Consensus 157 G~Y~C~a~~~~~~~~~~~~~l~V~ 180 (289)
T 3ejj_X 157 NTYVCKTMVNGRESTSTGIWLKVN 180 (289)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEEEEEEEeCCCccccccEEEEEE
Confidence 99999999 544555555555554
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=134.05 Aligned_cols=155 Identities=10% Similarity=0.154 Sum_probs=107.1
Q ss_pred CcccCCCcEEEEeEecc--CCCCcEEEEEE--CCccccc---------cccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 15 DHIKEDSDVYFDCDIVA--VPPVYKVEWRH--NNKTLHH---------NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~--~~~~~~i~W~~--~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.....|++++|.|.... .+.+ .|.|++ ++..+.. ...+.....+++|.|.+++.+|+|.|.|.+.|
T Consensus 9 v~g~~G~sv~L~~~~~~~~~~~~-~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n 87 (182)
T 1hnf_A 9 TWGALGQDINLDIPSFQMSDDID-DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD 87 (182)
T ss_dssp EEEETTSCEEECCTTCCCCSSEE-EEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred EEEecCCCEEEeCCcccccCcCC-EEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEe
Confidence 44578999999995432 3334 899999 8876621 12223334667999999999999999999998
Q ss_pred eCCCCc-cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEE
Q psy10918 82 IEGDGE-SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA 160 (207)
Q Consensus 82 ~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (207)
..|... ...+.|.|..+... +.. ...+..+.|.|.+.+.|.+ .+.|++++..+. . .... +.
T Consensus 88 ~~g~~~~~~~~~L~V~~~~~~----P~i--~~~~~~v~L~C~~~~~p~~-~~~W~~~g~~l~--~------~~~~---i~ 149 (182)
T 1hnf_A 88 TKGKNVLEKIFDLKIQERVSK----PKI--SWTCINTTLTCEVMNGTDP-ELNLYQDGKHLK--L------SQRV---IT 149 (182)
T ss_dssp TTSCEEEEEEEEEEEECCCCC----CEE--EEETTTTEEEEECSSCSSC-EEEEEESSCEEE--E------ESSC---EE
T ss_pred CCCceeEEEEEEEEEcCcCCC----CEE--EEccCcEEEEeEccCCCCC-EEEEEECCEECC--C------CCcE---EE
Confidence 776543 24566777754221 111 1234579999999998876 999999988751 1 1111 33
Q ss_pred EecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 161 YSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 161 i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
+. ...+|+|.|+|.|.|.+|..+....+
T Consensus 150 ~~-~~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 150 HK-WTTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp EE-CCSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred Ee-cccCCCcEEEEEEEeCCCCcEEccee
Confidence 32 34789999999999999987655443
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=139.94 Aligned_cols=174 Identities=11% Similarity=0.145 Sum_probs=112.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc----------ccccCCeE--e--cCCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH----------HNIAQGII--M--TNQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~----------~~~~~~~~--~--~~~~l~i~~~~~~d 71 (207)
+...+....+.+|++++|.|.+.+.+.+ .+.|++... ... .....++. . .+.+|.|.+++.+|
T Consensus 27 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 105 (237)
T 3sob_L 27 MTQSPSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPED 105 (237)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeCCCeEEEeCCCcEEEEEecCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhh
Confidence 3444566788999999999999888766 999999431 110 00011111 1 23469999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEeC---CcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeecc-c
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNV-A 146 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~ 146 (207)
+|.|.|.+.+..+........|.|... |.+....+ ......|+.+.|.|.+.+.++ .+.+.|++++..+.... .
T Consensus 106 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~-~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~ 184 (237)
T 3sob_L 106 FATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPP-SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE 184 (237)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECC-CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred CeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCC-ChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee
Confidence 999999998766543344556777542 22211111 111235778999999998544 35999999987654321 1
Q ss_pred eeEEe--ecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 147 QAHIL--RSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 147 ~~~~~--~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..... .++. .+.|.+.....+|+|.|+|.|.|.....
T Consensus 185 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 226 (237)
T 3sob_L 185 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 226 (237)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence 11111 1122 3458888889999999999999987655
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-23 Score=147.46 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=103.5
Q ss_pred CcccCCCcEEEEeEeccCCCC-cEEEEEECCccccccccC-------CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~-~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+.+|+.+.|.|.+.+.+++ ..+.|++++..+...... ........|.|.....+|.|.|+|.+.|..+..
T Consensus 127 ~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~ 206 (327)
T 2wng_A 127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG 206 (327)
T ss_dssp SCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCS
T ss_pred cccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCC
Confidence 457889999999999887654 389999999888653211 111112347777766677899999999876653
Q ss_pred c--cceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccce-eEEeecCc---eE
Q psy10918 87 E--SNAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQ-AHILRSGT---LS 157 (207)
Q Consensus 87 ~--~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~-~~~~~~~~---~~ 157 (207)
. .....+ .+..+|.+.... ..+.+|+.+.|.|.+.+.++ +..+.|+++|..+...... .....++. .+
T Consensus 207 ~~~~~~~~~~~~v~~~P~i~~~~---~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~ 283 (327)
T 2wng_A 207 DPLRGTANLSETIRVPPTLEVTQ---QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMS 283 (327)
T ss_dssp CCEEEEEEGGGTBCBCCEEEEEE---ECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEE
T ss_pred CcccceEEeccccCCCCEEEEec---CCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEE
Confidence 1 112222 223344332211 12568999999999998644 3489999999876432211 11122222 14
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.|.|..+..+|+|.|+|.|.|..+..
T Consensus 284 ~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 284 WLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp EEEC-------CCEEEEEEEETTCCC
T ss_pred EEEEccccccCCCEEEEEEEeCCCCC
Confidence 57788888999999999999998765
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=137.45 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=114.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC----CCcEEEEEECC--cccc---c-------cccCCeEe--c--CCeEEEEec
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP----PVYKVEWRHNN--KTLH---H-------NIAQGIIM--T--NQSLVLQRV 67 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~~i~W~~~~--~~~~---~-------~~~~~~~~--~--~~~l~i~~~ 67 (207)
+...+....+.+|++++|.|.+.+.+ .+ .+.|+++. ..+. . ....++.. . ..+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVG-FLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEE-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred eEeeCCeEEecCCCCEEEEEeCCCccccCCCc-eEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 44556777889999999999998887 44 89999963 2111 0 00112211 1 126999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEEeCCc-----ccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcC--c
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT-----CKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNN--S 139 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~--~ 139 (207)
+.+|+|.|.|.+.+..+........|.|..++. .....+....+.+|+.+.|.|.+.+.|. +..+.|+++. .
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~ 162 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ 162 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence 999999999999987655344556777776432 1112233445678999999999998873 2499999963 2
Q ss_pred eeeec----------------cceeEEee--cCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 140 AETVN----------------VAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 140 ~~~~~----------------~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
..... ..+..+.. ......|.|.+++.+|+|.|.|.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 21100 01122222 234567999999999999999999953
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-23 Score=138.49 Aligned_cols=171 Identities=12% Similarity=0.122 Sum_probs=107.7
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCc--ccc----------ccccCCeEec----CCeEEEEecCCCCCee
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNK--TLH----------HNIAQGIIMT----NQSLVLQRVNRQSAGN 74 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~--~~~----------~~~~~~~~~~----~~~l~i~~~~~~d~g~ 74 (207)
+....+.+|++++|.|.+ .+.+....+.|++++. .+. .....++... ..+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 456778899999999995 4442223899999542 211 0001122111 2369999999999999
Q ss_pred eEEEEeeeCC-CCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeec-ccee
Q psy10918 75 YTCVGFNIEG-DGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVN-VAQA 148 (207)
Q Consensus 75 Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~-~~~~ 148 (207)
|.|.+.+..+ ........|.|.. +|.+....+.. ....|..+.|.|.+.+. |++..+.|+++|..+... ....
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~ 165 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV 165 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEec
Confidence 9999998655 1222344566653 23222211111 12358899999999985 444589999998765322 1111
Q ss_pred EEee--cCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 149 HILR--SGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 149 ~~~~--~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.... ++. .+.|.|.....+|+|.|+|.|.|.....
T Consensus 166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 166 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp CCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 1111 121 2368899999999999999999987654
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-23 Score=145.24 Aligned_cols=177 Identities=12% Similarity=0.194 Sum_probs=117.1
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc---------------ccCCeE-----ecCCeEEEEecCCCCCe
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN---------------IAQGII-----MTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~---------------~~~~~~-----~~~~~l~i~~~~~~d~g 73 (207)
...+.+|++++|.|.+.+.+++..+.|+|++...... ...+.. ..+.+|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 4567889999999998765554489999965432210 001111 12356999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEeCCcccCCC-CceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEe
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ-QRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHIL 151 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 151 (207)
.|+|.+.+..+........+.+...+...... +.......|+.+.|.|.+ .+.|.+ .+.|++++..+.... ...
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~-~i~W~~~~~~~~~~~---~~~ 163 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVA-HIDWEGDLGEMESTT---TSF 163 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCC-EEEECCCSSBCCEEE---EEC
T ss_pred EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCc-eEEEEECCccccccc---cee
Confidence 99999987544333445666776655433221 222233467889999976 467776 999999887653221 111
Q ss_pred ecC---ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 152 RSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 152 ~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
..+ ..+.|.|......|+|.|+|.|.|..+.......+.+.+.
T Consensus 164 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~ 209 (308)
T 4fom_A 164 PNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ 209 (308)
T ss_dssp TTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC
T ss_pred eeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe
Confidence 111 1346889999999999999999998877655554544433
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=141.86 Aligned_cols=174 Identities=11% Similarity=0.168 Sum_probs=112.0
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC-----CCcEEEEEECCc--ccc----------ccccCCeEe--c--CCeEEEEe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP-----PVYKVEWRHNNK--TLH----------HNIAQGIIM--T--NQSLVLQR 66 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~~i~W~~~~~--~~~----------~~~~~~~~~--~--~~~l~i~~ 66 (207)
+...+....+.+|++++|.|.+.+.+ .+ .+.|++++. .+. .....++.. . ..+|.|.+
T Consensus 37 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 115 (252)
T 3bkj_L 37 MTQTPLSLPVNLGEQASISCRSSQSIVHSNGHT-YLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISR 115 (252)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred EEeCCceEEEeCCCcEEEEEEcCCCccccCCCC-cEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECC
Confidence 34445667789999999999998876 34 899999652 110 000112211 1 12799999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCceee
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAET 142 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~ 142 (207)
++.+|+|.|.|.+.+..+........|.|.. +|.+....+.. ....|+.+.|.|.+.+.+ ++..+.|+++|..+.
T Consensus 116 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~ 194 (252)
T 3bkj_L 116 VEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ 194 (252)
T ss_dssp CCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred CCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecC
Confidence 9999999999999877553333345577754 23222111111 123688999999999854 434899999987653
Q ss_pred ec-cceeEEe--ecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 143 VN-VAQAHIL--RSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 143 ~~-~~~~~~~--~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.. ....... .++. .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 195 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 195 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp SSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 22 1111111 1222 2458899999999999999999976554
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=140.16 Aligned_cols=163 Identities=9% Similarity=0.081 Sum_probs=117.2
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
.......+.+|++++|.|.+.+ .+.|++++..+.. ....+..|.|.+++.+|+|.|+|.+.| |. ..
T Consensus 17 ~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~--~~ 82 (290)
T 2o26_X 17 PAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNEM-----VENKKNEWIQEKAEATRTGTYTCSNSN--GL--TS 82 (290)
T ss_dssp SCSSEEEEETTSCEEEEEECTT-----EEEEEEECSSSCE-----EEECSSEEEETTCCGGGCEEEEEEESS--SC--EE
T ss_pred CCCCeEEEcCCCcEEEEECCCC-----cEEEecCCcceee-----ecCCCceEEEeccCHHhCeEEEEEeeC--Cc--cE
Confidence 3455667889999999999876 7999999987611 123347899999999999999999998 43 55
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEE-EcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT-FNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
.+.|.|..+|... .......+.+|+.+.|.|.+.+ |..+.+.|+ +++..+.. ......... ..|.|.++..+|
T Consensus 83 ~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~-~~~~~~~~~---~~L~i~~v~~~d 156 (290)
T 2o26_X 83 SIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPT-DLTFVPNPK---AGITIKNVKRAY 156 (290)
T ss_dssp EEEEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCT-TCEEEEETT---TEEEEESCCGGG
T ss_pred EEEEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCC-CCceeeCCC---CCEEEecccHHH
Confidence 6778888766554 3344456678999999999985 652499995 56654421 111222222 248999999999
Q ss_pred Ce-EEEEEEecCCCCC-ccceEEEEe
Q psy10918 169 YG-TLICWGSNKIGHQ-RVPCVFHIV 192 (207)
Q Consensus 169 ~g-~y~C~~~n~~g~~-~~~~~~~v~ 192 (207)
+| .|+|.|.|..+.. +..+.+.|.
T Consensus 157 ~G~~Y~C~a~n~~~~~~s~~~~l~V~ 182 (290)
T 2o26_X 157 HRLCVRCAAQRDGTWLHSDKFTLKVR 182 (290)
T ss_dssp TTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCCEEEEEEEECCceEEeEEEEEEEE
Confidence 99 9999999985542 224455544
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=134.87 Aligned_cols=167 Identities=14% Similarity=0.240 Sum_probs=112.9
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc---c------------cccCCeEec------CCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH---H------------NIAQGIIMT------NQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~---~------------~~~~~~~~~------~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+ .+ .+.|++++ ..+. . ....++... ..+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSY-WMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS 85 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGS-CEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeeecCCCcEEEEEEeccccCCCc-eEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence 4556789999999999998764 34 89999942 2210 0 001122211 23699999
Q ss_pred cCCCCCeeeEEEEeeeCCC----CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCC----ceEEEEE--
Q psy10918 67 VNRQSAGNYTCVGFNIEGD----GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD----VKFSWTF-- 136 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~----~~~~W~~-- 136 (207)
++.+|+|.|.|.+.+..+. .....+.|.|..++.+.. .+....+.+|+.++|.|.+.+.+++ +.+.|++
T Consensus 86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~-~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~ 164 (256)
T 1nqb_A 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQ-TPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK 164 (256)
T ss_dssp CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEE-ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEe-cCcEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence 9999999999999987552 112345677765543322 2344457799999999999988764 4999999
Q ss_pred cCceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 137 NNSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 137 ~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
++..+... ..+...........|.|.+++.+|+|.|+|.|.|..
T Consensus 165 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 219 (256)
T 1nqb_A 165 PGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV 219 (256)
T ss_dssp TTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence 45433110 112222233455679999999999999999999854
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-22 Score=136.56 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=111.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCC-----CCcEEEEEECC--cccc---c-------cccCCeEe--c--CCeEEEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVP-----PVYKVEWRHNN--KTLH---H-------NIAQGIIM--T--NQSLVLQ 65 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~~i~W~~~~--~~~~---~-------~~~~~~~~--~--~~~l~i~ 65 (207)
.+.+.+....+.+|++++|.|.+.+.+ .+ .+.|+++. ..+. . ....++.. . ..+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNT-YLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCc-eEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 345566777889999999999998876 44 89999953 2111 0 00112211 1 2369999
Q ss_pred ecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCc------------ccCCCCceeeeeeCCcEEEEEEeccCC-CCceE
Q psy10918 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT------------CKPHQQRVLGVARQEKVNISCEVDANP-PDVKF 132 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~ 132 (207)
+++.+|+|.|.|.+.+..+........|.|..++. .....+....+.+|+.++|.|.+.+.+ +...+
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 161 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM 161 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence 99999999999999876543233345677765421 111122223477999999999999875 23499
Q ss_pred EEEEcCc--eeee----c------------cceeEEee--cCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 133 SWTFNNS--AETV----N------------VAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 133 ~W~~~~~--~~~~----~------------~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.|++++. .... . ..+..+.. ......|.|.+++.+|+|.|.|.|.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 9999642 1110 0 11122221 234567999999999999999999985
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=141.15 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=109.8
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Cccccc----------cccCCeE----ecCCeEEEEecCCCCCe
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLHH----------NIAQGII----MTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~~----------~~~~~~~----~~~~~l~i~~~~~~d~g 73 (207)
..+ ...+.+|++++|.|.+. +.+ .+.|+++ +..+.. ....++. ....+|.|.+++.+|+|
T Consensus 6 ~~~-~~~v~~G~~v~L~C~~~--~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 81 (211)
T 3tv3_L 6 QPP-SASGSPGQSITISCTGT--SNN-FVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA 81 (211)
T ss_dssp CCS-EEEECTTCEEEEEEECC--CSS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred eCc-eEEEcCCCCEEEEEEEC--CCC-eEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence 344 66788999999999988 555 9999994 222110 0011111 11236999999999999
Q ss_pred eeEEEEeeeCC-CCccceEEEEEE----eCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccce
Q psy10918 74 NYTCVGFNIEG-DGESNAFFLNVM----YSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQ 147 (207)
Q Consensus 74 ~Y~C~~~~~~~-~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~ 147 (207)
.|.|.+.+..+ ........|.|. .+|.+...... .....|+.+.|.|.+.+.++ .+.+.|+++|..+......
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 160 (211)
T 3tv3_L 82 VYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET 160 (211)
T ss_dssp EEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCC-HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred EEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCc-hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc
Confidence 99999998766 233445667777 33333221111 12236899999999998633 3599999998775421111
Q ss_pred --eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 148 --AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 148 --~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.....++. .+.|.|.+...+|.|.|+|.|.|..+..
T Consensus 161 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~ 201 (211)
T 3tv3_L 161 TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 201 (211)
T ss_dssp CCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred CCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCE
Confidence 11111222 2468888888889999999999987644
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=140.46 Aligned_cols=172 Identities=13% Similarity=0.190 Sum_probs=108.4
Q ss_pred eeecCCCcccCCCcEEEEeEeccC-CCCcEEEEEECC--cccc-------------c-cccCCeEe----cCCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNN--KTLH-------------H-NIAQGIIM----TNQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~--~~~~-------------~-~~~~~~~~----~~~~l~i~~~ 67 (207)
.+.+ ...+.+|++++|.|.+.+. +.+ .+.|++.. .... . ....++.. ...+|.|.++
T Consensus 5 ~~~p-~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (218)
T 3s96_B 5 TQSS-SASFSLGASAKLTCTLNSQHSTY-TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI 82 (218)
T ss_dssp ECCS-EEEEETTSCEEEEEEECGGGTTC-CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred EeCC-cEEECCCCcEEEEEECCCCCCCc-EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence 3444 6778899999999999887 666 99999932 1100 0 00011111 1235999999
Q ss_pred CCCCCeeeEEEEeeeCC----CCccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcC
Q psy10918 68 NRQSAGNYTCVGFNIEG----DGESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNN 138 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~----~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~ 138 (207)
+.+|+|.|.|.+.+..+ ........|.|... |.+....+ ......|+.+.|.|.+.+. |++..+.|+++|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~-~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g 161 (218)
T 3s96_B 83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPP-SSEELKENKATLVCLISNFSPSGVTVAWKANG 161 (218)
T ss_dssp CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECC-CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCC-CcccccCCcEEEEEEECcccCCCeEEEEEECC
Confidence 99999999999998765 12234567888732 32221111 1123457889999999984 444489999998
Q ss_pred ceeeeccceeE-EeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 139 SAETVNVAQAH-ILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+........ ...++. .+.|.+.....+|+|.|+|.|.|..+..
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~ 210 (218)
T 3s96_B 162 TPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV 210 (218)
T ss_dssp EEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred EECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence 77543211111 111222 2347788888888999999999987644
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=149.60 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=117.3
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEE-----EEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKV-----EWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i-----~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.+....+.+|+++.|.|.+.+ +.+ .+ .|++++..+.... ...|.|.+++. |+| |+|.+.+ .+.
T Consensus 5 ~P~~~~v~~G~~v~L~C~~~g-p~p-~~~~~~~~w~k~~~~~~~~~-------~~~l~i~~v~~-d~g-Y~C~a~~-~~~ 72 (450)
T 1z7z_I 5 SPSKVILPRGGSVLVTCSTSC-DQP-MLLGIETPLPKKELLLPGNN-------RKVYELSNVQE-DSQ-PMCYSNC-PDG 72 (450)
T ss_dssp ESSEEEEETTEEEEEEEECCS-SCC-CEEEECSSSCEEECCSSTTT-------EEEEEEEEECS-CBC-CEEEEEE-TTE
T ss_pred CCCceEEecCCcEEEEEEccC-CCc-ccccccceeeecceEecCCC-------ceEEEEEeccc-CCe-eEEEEeC-CCC
Confidence 356778899999999999998 666 77 8999876543211 13789999987 999 9999964 333
Q ss_pred CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCc--eEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV--KFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
..+..+.|.|..+|......+....+.+|+.+.|.|.+.+.+++. .+.|++++..+.... .........|.|.+
T Consensus 73 ~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~----~~~~~~~~~L~i~~ 148 (450)
T 1z7z_I 73 QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP----AVGEPAEVTTTVLV 148 (450)
T ss_dssp EEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE----CCTTTEEEEEEEEC
T ss_pred cceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc----ccccccceEEEEEe
Confidence 335567788888776554444444577999999999999987754 899999987654221 11123345799999
Q ss_pred CCCCCCeEEEEEEecCCCCC
Q psy10918 164 NSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~ 183 (207)
+..+|+|.|+|.|.|..|..
T Consensus 149 ~~~~d~G~Y~C~a~n~~g~~ 168 (450)
T 1z7z_I 149 RRDHHGANFSCRTELDLRPQ 168 (450)
T ss_dssp CSSCSSCEEEEEEEEECGGG
T ss_pred eccccCceEEEEEEcccCCC
Confidence 99999999999999997753
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=135.13 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=112.7
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--ccccc---------------cccCCeEec------CCeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLHH---------------NIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~~---------------~~~~~~~~~------~~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.+ .+ .+.||+.. ..+.. ....++... ..+|.|.++
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 10 GLELVKPGASVKISCKTSGYTFTEY-TMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CceEEcCCCCEEEEEEEeccccccc-EEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 345688999999999988754 44 89999843 11100 001111111 124999999
Q ss_pred CCCCCeeeEEEEeeeCC---CCccceEEEEEEeC---------------CcccCCCCceeeeeeCCcEEEEEEeccCCCC
Q psy10918 68 NRQSAGNYTCVGFNIEG---DGESNAFFLNVMYS---------------PTCKPHQQRVLGVARQEKVNISCEVDANPPD 129 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~---~~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 129 (207)
+.+|+|.|.|.+.+..+ ........|.|... +......+....+.+|+.++|.|.+.+.+.+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 168 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS 168 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence 99999999999987621 11233456777642 1111122334567799999999999998887
Q ss_pred ceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceEEEEe
Q psy10918 130 VKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCVFHIV 192 (207)
Q Consensus 130 ~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~~~v~ 192 (207)
.+.|+++. ...... ..+......+....|.|.+++.+|+|.|.|.|.|..+.. .....|.|.
T Consensus 169 -~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 169 -NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp -CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred -EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 99999853 221100 112223334556679999999999999999999864322 223445444
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-23 Score=142.81 Aligned_cols=173 Identities=11% Similarity=0.161 Sum_probs=92.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc----------ccccCCeE----ecCCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH----------HNIAQGII----MTNQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~----------~~~~~~~~----~~~~~l~i~~~~~~d 71 (207)
+...+....+.+|++++|.|.+.+.+.+ .+.|++++. .+. .....++. ....+|.|.+++.+|
T Consensus 26 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 104 (233)
T 3bqu_C 26 VTQSPASLSMSIGEKVTIRCITSTDIDD-DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSED 104 (233)
T ss_dssp EEEECSBC-------CCEEEEEEEEESS-CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCC
T ss_pred EEEcCCeEEEecCCCEEEEEecCCcCCC-eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHH
Confidence 3445667778999999999999887666 799998542 110 00001111 112369999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeec-cc
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVN-VA 146 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-~~ 146 (207)
+|.|.|.+.+..+........|.|.. +|.+....+.. ....|+.+.|.|.+.+.++ +..+.|+++|..+... ..
T Consensus 105 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 183 (233)
T 3bqu_C 105 VADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN 183 (233)
T ss_dssp CSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEE
T ss_pred CEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceE
Confidence 99999999876554333333466654 23222211111 1236889999999998544 3489999998764322 11
Q ss_pred eeEEe--ecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 147 QAHIL--RSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 147 ~~~~~--~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
..... .++. .+.|.|.....+|+|.|+|.|.|....
T Consensus 184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 184 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred ecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 11111 1111 246888888889999999999997654
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-24 Score=143.75 Aligned_cols=173 Identities=14% Similarity=0.213 Sum_probs=110.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeE--ec--CCeEEEEecCCCCCeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGII--MT--NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~--~~--~~~l~i~~~~~~d~g~Y 75 (207)
+....+.+|++++|.|.+.+.+.+ .+.|++++ ..+. .....++. .. ..+|.|.+++.+|+|.|
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 84 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY 84 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCC-eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence 566778999999999998877766 79999853 2221 00011121 11 23699999999999999
Q ss_pred EEEEeeeCCC--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeecccee
Q psy10918 76 TCVGFNIEGD--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQA 148 (207)
Q Consensus 76 ~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~ 148 (207)
.|.+.|..+. .......|.|.. +|.+....+. .....|+.+.|.|.+.+. |+.+.+.|+++|..+.......
T Consensus 85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 163 (212)
T 1nfd_E 85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT 163 (212)
T ss_dssp EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC
T ss_pred EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC
Confidence 9999863221 112334566642 2332221211 123478899999999987 4424999999987654321111
Q ss_pred EEeecCc----eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 149 HILRSGT----LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 149 ~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....++. .+.|.|.++..+|+|.|+|.|.|..+...++
T Consensus 164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (212)
T 1nfd_E 164 KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS 205 (212)
T ss_dssp CCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred CceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence 1111111 2348888999999999999999988765443
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=148.87 Aligned_cols=172 Identities=17% Similarity=0.263 Sum_probs=122.2
Q ss_pred eeeecCCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|+++.|.|.+.+ .+.+ .+.|++++..+...... .....+++|.|.+++..|+|.|+|.+.|..|.
T Consensus 9 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 87 (395)
T 1bih_A 9 LKDQPAEVLFRENNPTVLECIIEGNDQGV-KYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGV 87 (395)
T ss_dssp ECCCCSEEEEETTSCEEECCCEESCCSSC-EEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred eecCCCceEEeCCCEEEEEEEEecCCCCc-eEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCe
Confidence 334456678899999999999988 6666 99999999888754321 12234568999999999999999999987765
Q ss_pred CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeec------cceeEEeecCceEE
Q psy10918 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVN------VAQAHILRSGTLSV 158 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~ 158 (207)
..+..+.|.+...+... ..+....+.+|+.+.|.|.+ .+.|.+ .+.|++++...... ........++ .
T Consensus 88 ~~s~~~~l~v~~~~~p~-~~~~~~~~~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 162 (395)
T 1bih_A 88 ASSRVISFRKTYLIASP-AKTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDG---N 162 (395)
T ss_dssp EECCCEEEEEEEEECCC-CEEEEECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECTTS---C
T ss_pred EEeEEEEEEEEEeecCC-cCCcceeeeeCCcEEEEecCCCCCCCC-eEEEEecCCCcCcccccccccccEEEcCCC---c
Confidence 54445566665432211 13334456789999999996 677776 99999986211111 1112222223 4
Q ss_pred EEEecCCCCCCe---EEEEEEecCCCCCcc
Q psy10918 159 VAYSPNSELDYG---TLICWGSNKIGHQRV 185 (207)
Q Consensus 159 l~i~~~~~~~~g---~y~C~~~n~~g~~~~ 185 (207)
|.|.++..+|+| .|+|.|.|..|....
T Consensus 163 L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~ 192 (395)
T 1bih_A 163 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192 (395)
T ss_dssp EEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred EEEEEEeeccCCCceEEEEEEEecccceEE
Confidence 888999999999 999999999887543
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=135.93 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=110.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccc-----------cccCCeEe------cCCeEEEEec
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHH-----------NIAQGIIM------TNQSLVLQRV 67 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~-----------~~~~~~~~------~~~~l~i~~~ 67 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.|++.. ..... ....++.. ...+|.|.++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCc-eEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 34455667788999999999999888776 99999843 11100 00011111 1235999999
Q ss_pred CCCCCeeeEEEEeeeCCCC---ccceEEEEEEe--------------------CCcccCCCCceeeeeeCCcEEEEEEec
Q psy10918 68 NRQSAGNYTCVGFNIEGDG---ESNAFFLNVMY--------------------SPTCKPHQQRVLGVARQEKVNISCEVD 124 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~ 124 (207)
+.+|+|.|.|.+.+..+.. ......|.|.. ++.+. ..+....+.+|+.++|.|.+.
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~ 162 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-QSPRNKVTVTGENVTLSCRQT 162 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-ESCSEEEEETTCCEEECEEEC
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-ecCCEEEEeCCCcEEEEEEcC
Confidence 9999999999998764421 12234567764 11111 223444567899999999998
Q ss_pred cCCCCceEEEEEcCceeeecc----------------ceeEEee-cCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 125 ANPPDVKFSWTFNNSAETVNV----------------AQAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 125 ~~~~~~~~~W~~~~~~~~~~~----------------~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+. .+ .+.|++......... .+..... ......|.|.+++.+|+|.|.|.|+|..|
T Consensus 163 ~~-~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 234 (256)
T 3tf7_C 163 NS-HN-YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG 234 (256)
T ss_dssp SC-CS-EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred CC-ce-EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence 76 54 999998432111100 0111111 22345799999999999999999999765
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=147.96 Aligned_cols=175 Identities=13% Similarity=0.197 Sum_probs=117.4
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc---c-------cccCCeEec----CCeEEEEecCCCCCeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH---H-------NIAQGIIMT----NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~---~-------~~~~~~~~~----~~~l~i~~~~~~d~g~Y 75 (207)
+....+.+|+++.|.|.+.+.+.+ .+.|++++ ..+. . ....++... ..+|.|.+++.+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (523)
T 2rcj_C 7 PPSASGTPGQRVTISCTGTSSGSI-TVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDY 85 (523)
T ss_pred CCceEEecCCcEEEEEEEeccCCc-eEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEE
Confidence 456678999999999999887766 99999975 2211 0 001122111 23699999999999999
Q ss_pred EEEEeeeCCCC--ccceEEEEEE----eCCcccCCCCceeeeeeCCcEEEEEEeccCCCC-ceEEEEEcCceeeecccee
Q psy10918 76 TCVGFNIEGDG--ESNAFFLNVM----YSPTCKPHQQRVLGVARQEKVNISCEVDANPPD-VKFSWTFNNSAETVNVAQA 148 (207)
Q Consensus 76 ~C~~~~~~~~~--~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~ 148 (207)
.|.+.|..|.. ......|.|. .+|.+.. .+.......|+.+.|.|.+.+.+++ ..+.|+++|..+.......
T Consensus 86 ~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~-~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 164 (523)
T 2rcj_C 86 YCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTL-FPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT 164 (523)
T ss_pred EEEEccCCCccccccCceEEEeccCCCcCCeEEe-cCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec
Confidence 99999876532 2334567774 2333322 2222334578899999999988764 4999999987654221111
Q ss_pred E--EeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 149 H--ILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 149 ~--~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
. ...++. .+.|.|.++..+|+|.|+|.|.|..+.......
T Consensus 165 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 209 (523)
T 2rcj_C 165 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 209 (523)
T ss_pred cccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccccccee
Confidence 0 111222 246999999999999999999999886654443
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=138.19 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=115.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC-CCCc--cc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE-GDGE--SN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~-~~~~--~~ 89 (207)
....+.+|+.+.|.|.+. +.+ .+.| +|..+.... ....|.|..+..+|.|.|+|.+.|.. |... +.
T Consensus 106 ~~~~v~~G~~v~l~C~~~--p~~-~i~W--~g~~~~~~~------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~ 174 (265)
T 2oz4_A 106 TKPEVSEGTEVTVKCEAH--PRA-KVTL--NGVPAQPLG------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174 (265)
T ss_dssp SCSEEETTCEEEEEEECC--TTS-EEEE--SSCSSSCCS------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEE
T ss_pred CCceecCCCcEEEEEEcc--CCC-EEEE--CCEEccCCC------CcEEEEEccccccCCceEEEEEEcCCCCCcccccc
Confidence 455678899999999988 666 9999 777763321 12458899999999999999998655 5432 25
Q ss_pred eEEEEEEeCCcccCCC-CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQ-QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
.+.|.|..+|.+.... +....+.+|+.+.|.|.+.|.|.+ .+.|++++... ...+.. ..++.+|
T Consensus 175 ~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p-~i~W~~~~~~~---------~~~g~~-----~~v~~~d 239 (265)
T 2oz4_A 175 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFP---------LPIGES-----VTVTRDL 239 (265)
T ss_dssp EEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EEEEEETTTEE---------CCTTSC-----EECCGGG
T ss_pred cEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCC-eEEEEECCccc---------CCCCcE-----EEeehhh
Confidence 6778888887764332 334567889999999999999997 99999998721 122321 2478899
Q ss_pred CeEEEEEEecCCCCCccceEEEEe
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|.|+|.|.|..|..+..+.+.|.
T Consensus 240 ~G~Y~C~a~N~~G~~~~~~~l~V~ 263 (265)
T 2oz4_A 240 EGTYLCRARSTQGEVTREVTVNVL 263 (265)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CeEEEEEEECCCCcEEEEEEEEEe
Confidence 999999999999988666665554
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=145.12 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=118.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCc--EEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc--
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVY--KVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE-- 87 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-- 87 (207)
+.+..+.+|+++.|.|.+.+.+++. .+.|++++..+....... ...+..|.|.+++.+|+|.|+|.+.|..|...
T Consensus 93 ~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 171 (450)
T 1z7z_I 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171 (450)
T ss_dssp CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC
T ss_pred CCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc-cccceEEEEEeeccccCceEEEEEEcccCCCCce
Confidence 3446688999999999999877654 789999998876532111 11235799999999999999999999866432
Q ss_pred -----cceEEEEEEeCCcccCCCCce---eeeeeCCcEEEEEEeccCCC--CceEEEEEcCceeeeccceeEEeecCceE
Q psy10918 88 -----SNAFFLNVMYSPTCKPHQQRV---LGVARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNVAQAHILRSGTLS 157 (207)
Q Consensus 88 -----~~~~~l~v~~~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 157 (207)
+....+.|...+. ..+.. ..+..|+.+.|.|.+.+.++ .+.+.|++++..+.. . +...+...
T Consensus 172 ~~~~~s~~~~l~v~~~~~---~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~---~--~~~~~~~~ 243 (450)
T 1z7z_I 172 LFENTSAPYQLQTFVLPA---TPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---T--VTYGNDSF 243 (450)
T ss_dssp EEEEECCCEECEECCCCS---SCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC---E--EEEETTEE
T ss_pred EEeeccCccceeeeccCC---CCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc---e--EEecCCce
Confidence 1233444443311 11222 45779999999999999833 349999999876543 1 22222221
Q ss_pred EEE-EecCCCCCCe--EEEEEEecCCCCCccceEEEEee
Q psy10918 158 VVA-YSPNSELDYG--TLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 158 ~l~-i~~~~~~~~g--~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
.+. ..++..+|+| .|+|.|.|..|.......+.|..
T Consensus 244 ~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~ 282 (450)
T 1z7z_I 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (450)
T ss_dssp EEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEec
Confidence 121 2267899999 99999999988776666665554
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=137.01 Aligned_cols=182 Identities=14% Similarity=0.202 Sum_probs=108.5
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc------c--c-------ccCCeEe------cCCeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH------H--N-------IAQGIIM------TNQSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~------~--~-------~~~~~~~------~~~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.+ .+ .+.|+|++ ..+. . . ...++.. ...+|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (227)
T 1mju_H 8 GAELVKPGASVKLSCKASGYTFTNY-WINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (227)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeEEcCCCCEEEEEEecCCccccc-eEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence 456788999999999998765 34 89999964 2210 0 0 0112221 1247999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceee
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAET 142 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~ 142 (207)
+.+|+|.|.|.+.+..+........|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.+..+.|++++..+.
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 165 (227)
T 1mju_H 87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG 165 (227)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence 999999999999874221112334677764 2222211111 134578999999999986 5555999999886532
Q ss_pred eccceeEEeecC---ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCC
Q psy10918 143 VNVAQAHILRSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 143 ~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p 200 (207)
........ ..+ ..+.|.|.....+| |.|+|.|.|..+.. .....+.+.++|.+|
T Consensus 166 ~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~--~~~~~~~~~~~p~~~ 222 (227)
T 1mju_H 166 VHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST--KVDKKIEPRGPTIKP 222 (227)
T ss_dssp EEECCCEE-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE--EEEEECCCCCC----
T ss_pred cEECCcee-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc--ceEEEeCCCCCCCCC
Confidence 11111111 112 13468888888878 99999999976654 334555555655544
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=139.10 Aligned_cols=176 Identities=13% Similarity=0.176 Sum_probs=111.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC----------------Cccccccc-cCCeEe-----cCCeEEEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN----------------NKTLHHNI-AQGIIM-----TNQSLVLQ 65 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~----------------~~~~~~~~-~~~~~~-----~~~~l~i~ 65 (207)
+...+....+.+|++++|.|.+.+.+.+ .+.|+|. +....... ..++.. ...+|.|.
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 4 VSQHPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSSCCC-SEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred cEECCcEEEEeCCCcEEEEeEecCCCce-EEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence 3445666778999999999999888776 8999992 22111110 011111 12369999
Q ss_pred ecCCCCCeeeEEEEeeeCC---CCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEE
Q psy10918 66 RVNRQSAGNYTCVGFNIEG---DGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWT 135 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~---~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~ 135 (207)
+++.+|+|.|.|.+.+..+ ........|.|.. +|.+....+....+..|+.+.|.|.+.+.++ +..+.|+
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 162 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 162 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence 9999999999999986432 1222345677764 2222221222222345899999999998665 3489999
Q ss_pred EcCceeeeccceeE--Ee-----ecCce---EEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 136 FNNSAETVNVAQAH--IL-----RSGTL---SVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 136 ~~~~~~~~~~~~~~--~~-----~~~~~---~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
++|..+........ .. .++.. +.|.|.....+| .|.|+|.|.|......
T Consensus 163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 99876542211000 00 12222 347788887778 9999999999876554
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-23 Score=140.16 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=108.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCC-cEEEEEECC--cccc----------ccccCCeEe----cCCeEEEEecCCCCCee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPV-YKVEWRHNN--KTLH----------HNIAQGIIM----TNQSLVLQRVNRQSAGN 74 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~~~--~~~~----------~~~~~~~~~----~~~~l~i~~~~~~d~g~ 74 (207)
+....+.+|++++|.|.+.+.+.. ..+.|++++ ..+. .....++.. ...+|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 456678899999999999875433 269999963 2210 000112211 12379999999999999
Q ss_pred eEEEEeeeCCC--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccce
Q psy10918 75 YTCVGFNIEGD--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQ 147 (207)
Q Consensus 75 Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~ 147 (207)
|.|.+.+..+. .......|.|.. +|.+....+. .....|+.+.|.|.+.+.++ +..+.|+++|..+......
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 184 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET 184 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC-HHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCC-hhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc
Confidence 99999987651 112233455532 2222211111 11235789999999998654 3599999998765322111
Q ss_pred eEEe--ecC---ceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 148 AHIL--RSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 148 ~~~~--~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.... .++ ..+.|.|.+...+|+|.|+|.|.|..+...
T Consensus 185 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 226 (234)
T 2j6e_L 185 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 226 (234)
T ss_dssp CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence 1111 111 235688888899999999999999876643
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=131.20 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=102.5
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc----------ccCCeEe--cCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----------IAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+|++|+|.|.+.. +.+ .+.|++++..+... ...+... .+++|.|.+++..|+|.|.|.+.+.
T Consensus 5 v~~~~G~~VtL~c~~~~-~~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 5 IYGVVYGNVTFHVPSNV-PLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEETTCCEEECCCCSS-CCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEcCCCEEEcCCCCC-Ccc-eEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 34678999999999854 555 99999987643211 0112222 4578999999999999999999877
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
.+ ...+.|.|..++..+... ..+....|.|.+.+.|.+ .+.|++++..+... .. ..+.+.
T Consensus 83 ~~---~~~~~L~V~~~~~~p~i~------~~~~~~~L~C~~~~~p~p-~i~W~~~~~~l~~~--------~~--~~l~~~ 142 (171)
T 1ccz_A 83 TD---TMKFFLYVLEMVSKPMIY------WECSNATLTCEVLEGTDV-ELKLYQGKEHLRSL--------RQ--KTMSYQ 142 (171)
T ss_dssp CS---CEEEEEEEECCCCCCEEE------EETTTTEEEEECSSCSSC-EEEEEETTEEEEEE--------SS--SEEEEE
T ss_pred CC---cEEEEEEEECcCCCCEEE------EecCCcEEEEEeCCCCCc-EEEEEECCEECcCC--------cc--eEEEEe
Confidence 66 456778888654322111 111224899999998876 99999998765421 11 123333
Q ss_pred cCCCCCCeEEEEEEecCCCCCccc
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...|.|.|+|.|.|..+..+..
T Consensus 143 --~~~~~g~Y~C~a~N~~~~~~~~ 164 (171)
T 1ccz_A 143 --WTNLRAPFKCKAVNRVSQESEM 164 (171)
T ss_dssp --CSCCSSCEEEEEEETTEEEEEE
T ss_pred --ccCCCceEEEEEEcccCcccce
Confidence 3678999999999999876544
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=133.09 Aligned_cols=173 Identities=13% Similarity=0.145 Sum_probs=113.2
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccC--CCCcEEEEEECC--cccc-------c--------cccCCeEec------CCe
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNN--KTLH-------H--------NIAQGIIMT------NQS 61 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~--~~~~-------~--------~~~~~~~~~------~~~ 61 (207)
.+...+....+.+|++++|.|.+.+. +.+ .+.|++.. ..+. . ....++... ..+
T Consensus 8 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 86 (256)
T 3juy_B 8 VQLVQSGAEVKKPGASVKVSCQASGYRFSHF-TVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAY 86 (256)
T ss_dssp CEEEECCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEE
T ss_pred EEEEecCCceecCCCeEEEEEEeecccccCc-eEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEE
Confidence 34556777889999999999999773 444 89999842 1110 0 001122211 125
Q ss_pred EEEEecCCCCCeeeEEEEeee-----------CCCCccceEEEEEEeCCc--------------ccCCCCceeeeeeCCc
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNI-----------EGDGESNAFFLNVMYSPT--------------CKPHQQRVLGVARQEK 116 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~-----------~~~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~ 116 (207)
|.|.+++.+|+|.|.|.+.+. ..........|.|...+. .....+....+.+|+.
T Consensus 87 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~ 166 (256)
T 3juy_B 87 MELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGER 166 (256)
T ss_dssp EEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSC
T ss_pred EEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCC
Confidence 999999999999999999875 112223345677765322 1112234456779999
Q ss_pred EEEEEEeccCCCCceEEEEEc--Cceeee-----------ccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFN--NSAETV-----------NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
++|.|.+.+.+....+.|++. +..... ...+......+....|.|.+++.+|+|.|.|.|.|..
T Consensus 167 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 167 ATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS 243 (256)
T ss_dssp EEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred EEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence 999999998776349999983 222211 0112233334556679999999999999999999854
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=133.79 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=106.8
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEEC--Cccccc---------------cccCCeEec------CCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHN--NKTLHH---------------NIAQGIIMT------NQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~--~~~~~~---------------~~~~~~~~~------~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+ .+ .+.|+++ +..+.. ....++... ..+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNY-GMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCeEecCCCcEEEEEEEeCcccccc-eEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 3456788999999999998764 44 8999997 332210 001122211 24799999
Q ss_pred cCCCCCeeeEEEEeeeCCC---CccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcC
Q psy10918 67 VNRQSAGNYTCVGFNIEGD---GESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNN 138 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~---~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~ 138 (207)
++.+|+|.|.|.+.+..+. .......|.|... |.+....+ ...+..|+.+.|.|.+.+ .|.|..+.|++++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999976521 1123456777653 22221111 113457999999999998 6765599999998
Q ss_pred ceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 139 SAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 139 ~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+....... ....+. .+.|.|... ..|.|.|+|.|.|..+..
T Consensus 165 ~~~~~~~~~~-~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~ 210 (219)
T 1c1e_H 165 LSSGVHTFPA-VLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASST 210 (219)
T ss_dssp BCTTEEECCC-EESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTE
T ss_pred cccceEecCC-cccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCc
Confidence 7532111111 111122 245788444 446699999999988754
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-22 Score=129.84 Aligned_cols=152 Identities=12% Similarity=0.126 Sum_probs=101.8
Q ss_pred CCCcccCCCcEEEEeEeccC-CCCcEEEEEEC-Ccccc------------ccccCCeE--ecCCeEEEEecCCCCCeeeE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHN-NKTLH------------HNIAQGII--MTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~-~~~~~------------~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~ 76 (207)
....+.+|++++|.|.+... +.+ .|.|++. +..+. .....+.. ..+++|.|.+++..|+|.|.
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~-~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQ-RLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCS-EEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCcee-EEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 44567899999999997542 344 9999994 32221 00001222 34577999999999999999
Q ss_pred EEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCce
Q psy10918 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156 (207)
Q Consensus 77 C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
|.+.+.. .....+.|.|..++..+ .. ...+..+.|.|.+...|.+ .+.|++++..+.. ...
T Consensus 86 C~v~~~~--~~~~~~~L~V~~~~~~P----~i--~~~~~~v~L~C~~~~gp~p-~i~W~~~~~~l~~--------~~~-- 146 (180)
T 2dru_A 86 MRMLHET--EDQWKITMEVYEMVSKP----MI--YWECSNATLTCEVLEGTDV-ELKLYQGKEHLRS--------LRQ-- 146 (180)
T ss_dssp EEEESSS--EEEEEEEEEEECCCCCC----EE--EEEGGGTEEEEECSSCTTC-EEEEEETTEEEEE--------ESS--
T ss_pred EEEEcCC--eEEEEEEEEEECCCCCC----EE--EecCCCEEEEEEeCCCCCC-EEEEEECCeECcC--------CCC--
Confidence 9987544 33456678887543322 11 1245679999999444766 9999999876531 111
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
..|.+. . .+|+|.|+|.|.|..+.....
T Consensus 147 ~~l~~~-~-~~d~g~Y~C~a~N~~~~~~~~ 174 (180)
T 2dru_A 147 KTMSYQ-W-TNLRAPFKCKAVNRVSQESEM 174 (180)
T ss_dssp SEEEEE-C-SCCSSCEEEEEEETTEEEEEE
T ss_pred CEEEEE-E-hhcCccEEEEEecCcCccccc
Confidence 234443 2 789999999999998866433
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-21 Score=133.31 Aligned_cols=170 Identities=13% Similarity=0.177 Sum_probs=108.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccC--CCCcEEEEEECCc--ccc----cc-----------ccCCeEec--C----CeE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNK--TLH----HN-----------IAQGIIMT--N----QSL 62 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~--~~~----~~-----------~~~~~~~~--~----~~l 62 (207)
+.+ +....+.+|++++|.|.+.+. +.+ .+.|++... ... .. ...++... . .+|
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSF-AISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM 81 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTS-CEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCe-EEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence 344 567788999999999999764 334 899998431 110 00 00111111 1 269
Q ss_pred EEEecCCCCCeeeEEEEeee--------CCCCccceEEEEEEe--------------CCcccCCCCceeeeeeCCcEEEE
Q psy10918 63 VLQRVNRQSAGNYTCVGFNI--------EGDGESNAFFLNVMY--------------SPTCKPHQQRVLGVARQEKVNIS 120 (207)
Q Consensus 63 ~i~~~~~~d~g~Y~C~~~~~--------~~~~~~~~~~l~v~~--------------~~~~~~~~~~~~~~~~g~~~~l~ 120 (207)
.|.+++.+|+|.|+|.+.+. ..........|.|.. ++......+. ..+.+|+.++|.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~ 160 (280)
T 3fku_X 82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLT 160 (280)
T ss_dssp EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEE
T ss_pred EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEE
Confidence 99999999999999999875 111122334566654 1111222233 567899999999
Q ss_pred EEecc-CCCCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 121 CEVDA-NPPDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 121 C~~~~-~~~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
|.+.+ .+....+.|++.. ...... ..+......+....|.|.+++.+|+|.|.|.+.|..
T Consensus 161 C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 161 CTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp EECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 99998 4433499999842 221110 112233334556679999999999999999999875
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=132.88 Aligned_cols=167 Identities=15% Similarity=0.197 Sum_probs=110.9
Q ss_pred ecCCCcccCCCcEEEEeEeccCC--CCcEEEEEECCc--ccc---------------ccccCCeEec------CCeEEEE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNK--TLH---------------HNIAQGIIMT------NQSLVLQ 65 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~--~~~---------------~~~~~~~~~~------~~~l~i~ 65 (207)
.+....+.+|++++|.|.+.+.+ .+ .+.|++++. .+. .....++... ..+|.|.
T Consensus 32 ~p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 110 (282)
T 1qok_A 32 QSGAELVRSGTSVKLSCTASGFNIKDS-YMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS 110 (282)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred CCCCEEEeCCCeEEEEEeccCCCCCCc-eEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence 34567789999999999998764 34 899999641 110 0001122211 1469999
Q ss_pred ecCCCCCeeeEEEEeeeCCC----CccceEEEEEEeCCc--------------ccCCCCceeeeeeCCcEEEEEEeccCC
Q psy10918 66 RVNRQSAGNYTCVGFNIEGD----GESNAFFLNVMYSPT--------------CKPHQQRVLGVARQEKVNISCEVDANP 127 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~----~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~ 127 (207)
+++.+|+|.|.|.+.+..+. .......|.|...+. .....+....+.+|+.++|.|.+.+.+
T Consensus 111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~ 190 (282)
T 1qok_A 111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV 190 (282)
T ss_dssp SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC
Confidence 99999999999999987651 112345677776431 111123344577899999999999988
Q ss_pred CCceEEEEE--cCceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 128 PDVKFSWTF--NNSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 128 ~~~~~~W~~--~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+ .+.|++ ++...... ..+...........|.|.+++.+|+|.|.|.|.|..
T Consensus 191 -~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 254 (282)
T 1qok_A 191 -S-YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY 254 (282)
T ss_dssp -S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred -c-eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence 6 999999 44433110 112222333455679999999999999999999853
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=131.43 Aligned_cols=180 Identities=13% Similarity=0.165 Sum_probs=112.2
Q ss_pred eeeecCCCcccCCCcEEEEeEeccC--CCCcEEEEEECC--cccc-----c---------c-ccCCeEe------cCCeE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNN--KTLH-----H---------N-IAQGIIM------TNQSL 62 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~--~~~~-----~---------~-~~~~~~~------~~~~l 62 (207)
+.+.+....+.+|++++|.|.+.+. +.. .+.|+|.. ..+. . . ...++.. ...+|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISAT-SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTS-CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCc-eEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 3445666778999999999999774 444 89999853 2110 0 0 1122221 12469
Q ss_pred EEEecCCCCCeeeEEEEeeeCC-C-----CccceEEEEEEeC-------CcccCCCCceeeeeeCCcEEEEEEeccC-CC
Q psy10918 63 VLQRVNRQSAGNYTCVGFNIEG-D-----GESNAFFLNVMYS-------PTCKPHQQRVLGVARQEKVNISCEVDAN-PP 128 (207)
Q Consensus 63 ~i~~~~~~d~g~Y~C~~~~~~~-~-----~~~~~~~l~v~~~-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~ 128 (207)
.|.+++.+|+|.|.|.+.+... . .......|.|... |......+....+..|+.+.|.|.+.+. |.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~ 162 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD 162 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence 9999999999999999987631 1 1123456888753 2222222222234468999999999986 54
Q ss_pred CceEEEEEcCc-eeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 129 DVKFSWTFNNS-AETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 129 ~~~~~W~~~~~-~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
++.+.|++++. .+...........++. .+.|.|..... + |.|+|.|.|..+.......+.
T Consensus 163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~ 226 (242)
T 1hxm_B 163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEII 226 (242)
T ss_dssp CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEE
T ss_pred CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEee
Confidence 45999999986 3321111111112222 24577766654 4 999999999988765554443
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=144.86 Aligned_cols=160 Identities=12% Similarity=0.123 Sum_probs=113.8
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcccccc------------ccCCeEe-------cCCeEEEEecCCCCCeeeE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN------------IAQGIIM-------TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~------------~~~~~~~-------~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+.+|+++.|.|.+.+.+.+ .+.|++++..+... ...++.. ....|.|.+++.+|+|.|+
T Consensus 5 ~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 5 LGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 46789999999999887777 99999998542210 0111111 2457999999999999999
Q ss_pred EEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCce
Q psy10918 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156 (207)
Q Consensus 77 C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
|.+.+.. ..+.|.|..... .+. ..+.+|+.+.|.|.+.+.|.+ .+.|++++.... ...
T Consensus 84 C~~~n~~-----~~~~l~V~~~~~----~~~-~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~-----------~~~ 141 (363)
T 1wio_A 84 CEVEDQK-----EEVQLLVFGLTA----NSD-THLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNI-----------QGG 141 (363)
T ss_dssp EEETTEE-----EEEEEEEEEEEE----SSC-SSEESBSCEEEEEECCTTCCC-CEEEECSSSCEE-----------EES
T ss_pred EEEEECC-----CcEEEEEEeCCC----CCc-eEEecCCCEEEEEEcCCCCCC-eEEEEcCCCccc-----------ccc
Confidence 9998763 255666664211 111 246799999999999998877 999999876531 122
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCC
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p 200 (207)
..|.|.++..+|+|.|+|.|.|..+.....+. +.+..+|..|
T Consensus 142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~--l~v~~~p~~~ 183 (363)
T 1wio_A 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKID--IVVLAFQKAS 183 (363)
T ss_dssp SEEEECSBCGGGCEECEEEEEETTEEEEECCE--ECEECCSCSE
T ss_pred eEEEEeeCChhcCCEEEEEEecCCCeEEEEEE--EEEecCCCCC
Confidence 35899999999999999999997665544444 4444444444
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=139.64 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=116.6
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCc----EEEEEECCccccc-----------cccCCeE---------ecCCeEEEEe
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVY----KVEWRHNNKTLHH-----------NIAQGII---------MTNQSLVLQR 66 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~----~i~W~~~~~~~~~-----------~~~~~~~---------~~~~~l~i~~ 66 (207)
.+....+..|++++|.|.+.+.+.+. .+.|+|++..... ....+.. ..+.+|.|.+
T Consensus 6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 85 (313)
T 4fqp_A 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG 85 (313)
T ss_dssp CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence 34566778899999999997765431 4899998754321 0001111 1235699999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeecc
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNV 145 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~ 145 (207)
++.+|+|.|.|.+.+.........+.|.+...|...... ....+..+..+.+.|.+. +.|++ .+.|++++..+....
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~-~~~~~~~~~~~~~~C~~~~~~P~~-~i~W~~~~~~~~~~~ 163 (313)
T 4fqp_A 86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV-QKVQLTGEPVPMARCVSTGGRPPA-QITWHSDLGGMPNTS 163 (313)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEE-CCBCCCSSCEEEEEEEEEEEBSCC-EEEEEETTCCEEEEE
T ss_pred CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecc-cceEeecCceEEEEEEccCccCCc-EEEeecCCccccccc
Confidence 999999999998864433333445566666666543221 222345677888899876 55665 999999887653221
Q ss_pred ceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 146 AQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 146 ~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
......++. .+.|.+......|+|.|+|.|.|..+.......+.+.+
T Consensus 164 -~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V 213 (313)
T 4fqp_A 164 -QVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213 (313)
T ss_dssp -EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCB
T ss_pred -eeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccc
Confidence 111112222 24588888899999999999999887665555444443
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-21 Score=133.10 Aligned_cols=173 Identities=13% Similarity=0.160 Sum_probs=113.3
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCC------CCcEEEEEECC--cccc----c------cccCCeEe--c--CCeEE
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVP------PVYKVEWRHNN--KTLH----H------NIAQGIIM--T--NQSLV 63 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~------~~~~i~W~~~~--~~~~----~------~~~~~~~~--~--~~~l~ 63 (207)
+.+.+.+....+.+|++++|.|.+.+.+ .+ .+.|+++. ..+. . ....++.. . ..+|.
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~-~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKN-YLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEE-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCc-eEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 3455566777889999999999998776 34 89999953 2111 0 00112221 1 23799
Q ss_pred EEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCc------------------ccCCCCceeeeeeCCcEEEEEEecc
Q psy10918 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT------------------CKPHQQRVLGVARQEKVNISCEVDA 125 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------------~~~~~~~~~~~~~g~~~~l~C~~~~ 125 (207)
|.+++.+|+|.|.|.+.+..+........|.|..++. +....+....+.+|+.++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~ 164 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG 164 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence 9999999999999999876543223345678876531 1111122235779999999999998
Q ss_pred CCC-CceEEEEEcC--ceeeec----------------cceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 126 NPP-DVKFSWTFNN--SAETVN----------------VAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 126 ~~~-~~~~~W~~~~--~~~~~~----------------~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+. ...+.|+++. ...... ..+..+. .......|.|.+++.+|+|.|.|.|.|.
T Consensus 165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 764 2399999963 221100 0111222 1234567999999999999999999995
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=147.84 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=116.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCC---cEEEEEECC--cccc----------ccccCCeE--ec--CCeEEEEec
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPV---YKVEWRHNN--KTLH----------HNIAQGII--MT--NQSLVLQRV 67 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~---~~i~W~~~~--~~~~----------~~~~~~~~--~~--~~~l~i~~~ 67 (207)
.+...+....+.+|++++|.|.+.+.+.+ ..+.|++++ ..+. .....++. .. ..+|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV 82 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence 34556677788999999999999877652 389999963 2221 00011221 12 236999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEEe---CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
+.+|+|.|+|.+.+..+........|.|.. +|.+....+.. ....|..+.|.|.+.+. |++..+.|+++|..+..
T Consensus 83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~ 161 (438)
T 1qgc_4 83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN 161 (438)
T ss_dssp CGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred cCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence 999999999999987765444456677753 23222111111 12357899999999874 54459999999876543
Q ss_pred c-cceeEEee--cCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 144 N-VAQAHILR--SGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 144 ~-~~~~~~~~--~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
. ........ ++. .+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 207 (438)
T 1qgc_4 162 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 207 (438)
T ss_dssp TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence 2 11111111 111 3468999999999999999999988764
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=135.67 Aligned_cols=165 Identities=13% Similarity=0.175 Sum_probs=104.2
Q ss_pred ccCCCcEEEEeEeccCC---CCcEEEEEECCcccccccc-------CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHHNIA-------QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+|++++|.|.+.+.+ ....+.|++++..+..... .........|.|.+++..|+|.|.|.+.+..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 78999999999998763 3348999999976643110 0111112469999999999999999999876643
Q ss_pred c-cceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCce---EE
Q psy10918 87 E-SNAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGTL---SV 158 (207)
Q Consensus 87 ~-~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---~~ 158 (207)
. ...+.+ .+..+|.+........ ...|+.+.|.|.+.+. |++..+.|+++|..+..... ......++.. +.
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~ 173 (207)
T 2vol_A 95 PIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSK 173 (207)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEE
T ss_pred ceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEE
Confidence 1 112222 2233444322221111 1258899999999985 44359999999886432111 1112223332 34
Q ss_pred EEEecCCCCCCeEEEEEEecCCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
|.+.....+|.|.|+|.|.|....
T Consensus 174 l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 174 LNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EEECHHHcCCCCEEEEEEECCCCC
Confidence 666666667899999999997653
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=131.97 Aligned_cols=167 Identities=17% Similarity=0.277 Sum_probs=107.5
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--cccc----c----------cccCCeEec------CCeEEEEecC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTLH----H----------NIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~~----~----------~~~~~~~~~------~~~l~i~~~~ 68 (207)
+....+.+|++++|.|.+.+.+. ...+.|+|++ .... . ....++... ..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 45567899999999999987642 2389999853 2211 0 001122211 1379999999
Q ss_pred CCCCeeeEEEEeeeCCCCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
.+|+|.|.|.+.+.. .......|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.|..+.|++++..+..
T Consensus 87 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~ 163 (210)
T 3d9a_H 87 TEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV 163 (210)
T ss_dssp GGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred cccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccce
Confidence 999999999998753 222345667663 2222211111 234678999999999987 65559999998865321
Q ss_pred ccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 144 NVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 144 ~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..... ....+. .+.|.|.+...++ |.|+|.|.|..|..
T Consensus 164 ~~~~~-~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 204 (210)
T 3d9a_H 164 HTFPA-VLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 204 (210)
T ss_dssp EECCC-EEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred EEcCC-ccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence 11111 112221 3458888888767 99999999988765
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=148.63 Aligned_cols=167 Identities=18% Similarity=0.269 Sum_probs=115.5
Q ss_pred CcccCCCcEEEEeEe-ccCCCCcEEEEEECCcccccc-----------ccCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHN-----------IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+|++++|.|.+ .+.+.+ .+.|++++..+... ..+.....+++|.|.+++.+|+|.|+|.+.+.
T Consensus 376 ~~~~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~ 454 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGAPKKPPQ-RLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNR 454 (581)
T ss_dssp EEEETTSCEEECCTTCCSSSSC-EEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECT
T ss_pred cceecCCcEEEeeeecCCCCCc-eEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcC
Confidence 456789999999998 666766 99999987633111 12233344568999999999999999999988
Q ss_pred CCCCccceEEEEEEeCCcccCCCCceeeeeeCCc-EEEEEEeccC-CCCceEEEEEcCceeeeccceeEE----ee---c
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK-VNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI----LR---S 153 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~----~~---~ 153 (207)
.+......+.|.|..+|..+........+..+.. +.|.|.+.+. |.+ .+.|++++..+........+ .. .
T Consensus 455 ~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 533 (581)
T 3o3u_N 455 NGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAG-TLSWHLDGKPLVPNEKGVSVKEQTRRHPET 533 (581)
T ss_dssp TSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCC-EEEEEETTEECCTTSTTEEEEEEEEECTTT
T ss_pred CCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCC-eEEEEECCEECCCCCCeEEEEeeeEEcCCC
Confidence 7766455778888876654433322223445554 4679999984 776 99999998876432222111 11 1
Q ss_pred Cc---eEEEEEecCC-CCCCeEEEEEEecCCCCC
Q psy10918 154 GT---LSVVAYSPNS-ELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 154 ~~---~~~l~i~~~~-~~~~g~y~C~~~n~~g~~ 183 (207)
+. .+.|.|.+++ ..+.|.|+|.|+|..+..
T Consensus 534 g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 534 GLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp CCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred ceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 21 3568888887 555889999999987543
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=131.53 Aligned_cols=168 Identities=14% Similarity=0.235 Sum_probs=108.9
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc------cc-----------ccCCeEec------CCeEEEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH------HN-----------IAQGIIMT------NQSLVLQ 65 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~------~~-----------~~~~~~~~------~~~l~i~ 65 (207)
....+.+|++++|.|.+.+.+ .+ .+.|+++. .... .. ...++... ..+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 8 GGGLVQSGGSLRLSCATSGFTFTDY-YMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CceeEcCCCEEEEEEEecCccCCCC-cEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 456788999999999998754 44 89999853 2110 00 01122211 2379999
Q ss_pred ecCCCCCeeeEEEEeeeCCC----CccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEE
Q psy10918 66 RVNRQSAGNYTCVGFNIEGD----GESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTF 136 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~----~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~ 136 (207)
+++..|+|.|.|.+.+..+. .......|.|... |.+....+. ..+..|+.+.|.|.+.+. |.|..+.|++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 165 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNS 165 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc-ccccCCCcEEEEEEEccEECCCCEEEEec
Confidence 99999999999999876531 2223456777642 222211111 124578999999999986 6555999999
Q ss_pred cCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 137 NNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
++..+... .......++. .+.|.|.+....| |.|+|.|.|..|...
T Consensus 166 ~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~ 214 (222)
T 1q9r_B 166 GSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 214 (222)
T ss_dssp GTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred CCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence 88654221 1111112221 2358888888889 999999999988653
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=127.64 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=110.2
Q ss_pred CcccCCCcEEEEeEeccCCCCc-EEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVY-KVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
..+..|++++|.|.+ +.+.+. .|+|++.+..+. .......+..|.|.+++.+|+|.|.|.+.+..+.. ...+.|
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l 91 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG---AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQL 91 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC---CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC---cEEecCCccEEEECccCcccCceEEEEEEeCCCce-EEEEEE
Confidence 478899999999999 765543 899999665541 11112234579999999999999999999876543 567889
Q ss_pred EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCC---ceEEEEEcCceeeeccc-eeEE------e---ecCc---e
Q psy10918 94 NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPD---VKFSWTFNNSAETVNVA-QAHI------L---RSGT---L 156 (207)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~~~~W~~~~~~~~~~~~-~~~~------~---~~~~---~ 156 (207)
.|+.+|......+. ....|+.. |.|.+.+. |.+ +++.|++++..+..... .... . .... .
T Consensus 92 tV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt 168 (210)
T 1gsm_A 92 LVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT 168 (210)
T ss_dssp EEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred EEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE
Confidence 99988865543332 34567778 99999986 532 48999999987642211 1011 0 0111 2
Q ss_pred EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+.|.+......+.+.|+|.|.+..-
T Consensus 169 s~~~~~~~~~D~~~~~tC~a~~~L~ 193 (210)
T 1gsm_A 169 ERWRLPPLGTPVPPALYCQATMRLP 193 (210)
T ss_dssp EEEECCCCCSSCCSEEEEEEEEEET
T ss_pred EEEeecCCcccCCceEEEEEEeeCC
Confidence 3455556677777999999999874
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=133.23 Aligned_cols=172 Identities=12% Similarity=0.112 Sum_probs=102.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc---c-c------------ccCCeE-----ecCCeEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH---H-N------------IAQGII-----MTNQSLV 63 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~---~-~------------~~~~~~-----~~~~~l~ 63 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.|++.. .... . . ...... ....+|.
T Consensus 4 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (259)
T 3omz_A 4 NLEGRTKSVIRQTGSSAEITCDLAEGSTG-YIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI 82 (259)
T ss_dssp -------CEEEETTCCEEEECCC-----C-EEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred ccccCCceeEecCCCcEEEEEEEccCCCc-EEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence 34455677788999999999999887766 99999932 1110 0 0 001111 1234699
Q ss_pred EEecCCCCCeeeEEEEeeeCCC--CccceEEEEEEeCC----------------cccCCCCceeeeeeCCcEEEEEEecc
Q psy10918 64 LQRVNRQSAGNYTCVGFNIEGD--GESNAFFLNVMYSP----------------TCKPHQQRVLGVARQEKVNISCEVDA 125 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~~~~--~~~~~~~l~v~~~~----------------~~~~~~~~~~~~~~g~~~~l~C~~~~ 125 (207)
|.+++.+|+|.|+|.+.+..+. .......|.|...+ ......+....+.+|+.++|.|.+.+
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 162 (259)
T 3omz_A 83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET 162 (259)
T ss_dssp ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence 9999999999999999876542 22334567777532 11112234456789999999999887
Q ss_pred CCCCceEEEEEcCce--eeec-----------cceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 126 NPPDVKFSWTFNNSA--ETVN-----------VAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 126 ~~~~~~~~W~~~~~~--~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
..+...+.|++.+.. .... ..+..+. .......|.|.+++.+|+|.|.|.+++.
T Consensus 163 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 163 SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 533349999985421 1100 0111121 1123456999999999999999999853
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=131.59 Aligned_cols=158 Identities=14% Similarity=0.204 Sum_probs=111.6
Q ss_pred CcccCCCcEEEEeEecc-CCCC-cEEEEEECCccccccccCCeEecCCeEEEEec---CCCCCee--eEEEEeeeCCCCc
Q psy10918 15 DHIKEDSDVYFDCDIVA-VPPV-YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRV---NRQSAGN--YTCVGFNIEGDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~~~~-~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g~--Y~C~~~~~~~~~~ 87 (207)
..+.+|++++|.|.+.+ .|.+ ..+.|++++..+.. .....+..+.+... +..|+|. |+|.+.|..+..
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~- 87 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ- 87 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCc-
Confidence 46789999999999988 5532 38999999988764 23344566777766 7788884 999999877654
Q ss_pred cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCC
Q psy10918 88 SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 88 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 167 (207)
...+.|.|...|. +........+.+|+.+.|.|.+. |.+ .+.| +|..+. ..+....|.+..+..+
T Consensus 88 ~~~~~l~V~~~p~-p~~~~~~~~v~~G~~v~l~C~~~--p~~-~i~W--~g~~~~---------~~~~~~~l~i~~~~~~ 152 (265)
T 2oz4_A 88 ETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAH--PRA-KVTL--NGVPAQ---------PLGPRAQLLLKATPED 152 (265)
T ss_dssp EEEEEEEEECCCC-CEEEESCSEEETTCEEEEEEECC--TTS-EEEE--SSCSSS---------CCSSEECCEEECCGGG
T ss_pred EEEEEEEEeCCCC-ceeecCCceecCCCcEEEEEEcc--CCC-EEEE--CCEEcc---------CCCCcEEEEEcccccc
Confidence 4567788876443 11122233467899999999998 665 9999 666542 1233455788888999
Q ss_pred CCeEEEEEEecCC-CCCc---cceEEEEe
Q psy10918 168 DYGTLICWGSNKI-GHQR---VPCVFHIV 192 (207)
Q Consensus 168 ~~g~y~C~~~n~~-g~~~---~~~~~~v~ 192 (207)
|+|.|+|.|.|.. |... ....+.|.
T Consensus 153 ~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~ 181 (265)
T 2oz4_A 153 NGRSFSCSATLEVAGQLIHKNQTRELRVL 181 (265)
T ss_dssp TTEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred CCceEEEEEEcCCCCCcccccccEEEEEE
Confidence 9999999998655 6543 34444444
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=138.49 Aligned_cols=177 Identities=19% Similarity=0.293 Sum_probs=116.2
Q ss_pred CCCcccCCCcEEEEeEeccCC---CCcEEEEEECCcc---------------ccccccCCeEe-----cCCeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHNNKT---------------LHHNIAQGIIM-----TNQSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~---------------~~~~~~~~~~~-----~~~~l~i~~~~~ 69 (207)
....+.+|+++.|.|.+.+.+ ....+.|++++.. +......++.. .+.+|.|.+++.
T Consensus 22 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~ 101 (331)
T 3u83_A 22 DSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLEL 101 (331)
T ss_dssp EEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCG
T ss_pred CcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCc
Confidence 346788999999999987751 2237999995421 10011112221 245799999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCC-CCceeeeeeC---CcEEEEEE-eccCCCCceEEEEEcCceeeec
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH-QQRVLGVARQ---EKVNISCE-VDANPPDVKFSWTFNNSAETVN 144 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~~g---~~~~l~C~-~~~~~~~~~~~W~~~~~~~~~~ 144 (207)
.|+|.|.|.+.+.........+.|.|..+|..... ......+..| +.+.|.|. ..+.|.+ .+.|++++......
T Consensus 102 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~ 180 (331)
T 3u83_A 102 EDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS-VVSWETRLKGEAEY 180 (331)
T ss_dssp GGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCC-EEEEEESSCCEEEE
T ss_pred ccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCc-eEEEEcCCCCcccc
Confidence 99999999965443333456778888887765321 2233345567 77999997 7788886 99999964332111
Q ss_pred cceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 145 VAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 145 ~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
......++. .+.|.|.++..+|+|.|+|.|.|..|..+..+.+.|.
T Consensus 181 --~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 229 (331)
T 3u83_A 181 --QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229 (331)
T ss_dssp --EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE
T ss_pred --ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe
Confidence 111111222 2458888889999999999999998876555555443
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-22 Score=140.52 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=115.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+........+.+|+++.|.|.+.+. +.|++++...... ........|.|.+++..|+|.|+|.+.|..+..
T Consensus 7 i~~~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~- 77 (292)
T 4dkd_C 7 IEPSVPELVVKPGATVTLRCVGNGS-----VEWDGPPSPHWTL---YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGG- 77 (292)
T ss_dssp EESCCSSCEECTTCCEEEEEECSSC-----CCBCCCCCSSCEE---CCBTTEEEEEESSCCGGGCSCEEECCCC----C-
T ss_pred ecCCCCeEEEcCCCcEEEEEcCCCc-----eEEccCCCCceEE---eccCceEEEEEcccccccCEEEEEEEccCCCCc-
Confidence 3344566788999999999998763 7899765432110 001112479999999999999999999877665
Q ss_pred cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCC
Q psy10918 88 SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 88 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 167 (207)
+..+.|.|..++......+....+.+|+.+.|.|.+.+....+.+.|++++...............+ .|.|.++..+
T Consensus 78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~ 154 (292)
T 4dkd_C 78 SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFI 154 (292)
T ss_dssp CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGG
T ss_pred ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCc---eEEECCCCHH
Confidence 5577788887665433344455678999999999999732213899999754322222222222222 2889999999
Q ss_pred CCeEEEEEEecCCCCC-ccceEEEEe
Q psy10918 168 DYGTLICWGSNKIGHQ-RVPCVFHIV 192 (207)
Q Consensus 168 ~~g~y~C~~~n~~g~~-~~~~~~~v~ 192 (207)
|+|.|+|.|.|..+.. +..+.+.|.
T Consensus 155 d~G~Y~C~a~n~~~~~~s~~~~l~V~ 180 (292)
T 4dkd_C 155 QSQDYQCSALMGGRKVMSISIRLKVQ 180 (292)
T ss_dssp GCSEEEEEECSTTSCEECCCEEEEEE
T ss_pred HCeEEEEEEEeCCCceeEEEEEEEEe
Confidence 9999999999887644 235455444
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=139.83 Aligned_cols=162 Identities=12% Similarity=0.132 Sum_probs=107.7
Q ss_pred ccCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc---------CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA---------QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+|+.+.|.|.+.+ .|.+..+.|++++..+..... .........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 128 ~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 207 (438)
T 1qgc_4 128 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 207 (438)
T ss_dssp HHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred hccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence 346889999999977 454448999999988765310 0111113469999999999999999999876653
Q ss_pred ccceEEEEEEeC-CcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec----------------cc
Q psy10918 87 ESNAFFLNVMYS-PTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN----------------VA 146 (207)
Q Consensus 87 ~~~~~~l~v~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~----------------~~ 146 (207)
.+.+.+... +......+....+.+|+.+.|.|.+.+.|. ...+.|+++ +..+... ..
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 1qgc_4 208 ---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKG 284 (438)
T ss_dssp ---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTT
T ss_pred ---ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCC
Confidence 233333321 111111223345779999999999999872 249999997 4433210 11
Q ss_pred eeEEeec--CceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 147 QAHILRS--GTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 147 ~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+..+..+ .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 285 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 321 (438)
T 1qgc_4 285 RFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGG 321 (438)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSS
T ss_pred cEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCC
Confidence 2222222 3355799999999999999999999543
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-21 Score=129.21 Aligned_cols=168 Identities=13% Similarity=0.221 Sum_probs=109.1
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--ccc---c-c-----------cccCCeEec------CCeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTL---H-H-----------NIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~---~-~-----------~~~~~~~~~------~~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.+ .+ .+.|||.. ..+ . . ....++... ..+|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKY-WMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCeEecCCCcEEEEEEecCccCCCc-eEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 457788999999999998754 34 89999853 111 0 0 001122221 136999999
Q ss_pred CCCCCeeeEEEEeeeCCC--CccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccC-CC-CceEEEEEcCc
Q psy10918 68 NRQSAGNYTCVGFNIEGD--GESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDAN-PP-DVKFSWTFNNS 139 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~~W~~~~~ 139 (207)
+.+|+|.|.|.+.+..+. .......|.|... |.+.... ...+..|+.+.|.|.+.+. |. ++.+.|++++.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~ 164 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK 164 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence 999999999999875432 1123456777642 2221111 1224578999999999987 55 35999999887
Q ss_pred eeeeccceeEEeecCce---EEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 140 AETVNVAQAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 140 ~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+...........++.. +.|.|......|.|.|+|.|.|..+..
T Consensus 165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 64221111111222322 358888888889999999999988765
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=131.27 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=104.8
Q ss_pred CCCcccCCCcEEEEeEeccC--CCCcEEEEEECCc--cccc----c------ccCCeEe--c--CCeEEEEecCCCCCee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNK--TLHH----N------IAQGIIM--T--NQSLVLQRVNRQSAGN 74 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~--~~~~----~------~~~~~~~--~--~~~l~i~~~~~~d~g~ 74 (207)
....+.+|++++|.|.+.+. +.+ .+.|+|... .... . ...++.. . ..+|.|.+++.+|+|.
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSN-YVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTS-CCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCc-eEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 34678899999999999876 555 899999531 1110 0 0111111 1 1269999999999999
Q ss_pred eEEEEeeeCCC--CccceEEEEEEeCCcc-------------------cCCCCceeeeeeCCcEEEEEEeccCCC-CceE
Q psy10918 75 YTCVGFNIEGD--GESNAFFLNVMYSPTC-------------------KPHQQRVLGVARQEKVNISCEVDANPP-DVKF 132 (207)
Q Consensus 75 Y~C~~~~~~~~--~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~ 132 (207)
|.|.+.+..+. .......|.|..++.. ....+....+.+|+.+.|.|.+.+.+. ...+
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 168 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAM 168 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEE
Confidence 99999875432 1123456777654321 111122234678999999999988762 3499
Q ss_pred EEEEcC--ceeeec----------------cceeEEeec--CceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 133 SWTFNN--SAETVN----------------VAQAHILRS--GTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 133 ~W~~~~--~~~~~~----------------~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.|++++ ...... ..+..+..+ .....|.|.+++.+|+|.|.|.|.|.
T Consensus 169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 999863 222110 012222222 34567999999999999999999995
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=135.98 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=102.8
Q ss_pred ccCCCcEEEEeEeccC---CCCcEEEEEECCcccccccc-------CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAV---PPVYKVEWRHNNKTLHHNIA-------QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~---~~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+|++++|.|.+.+. +....+.|++++..+..... .........|.|.+++.+|+|.|+|.+.+..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 7889999999999876 33248999999977653210 0111123469999999999999999999875533
Q ss_pred c-cceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccc-eeEEeecCce---EE
Q psy10918 87 E-SNAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVA-QAHILRSGTL---SV 158 (207)
Q Consensus 87 ~-~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---~~ 158 (207)
. ...+.+ .+..+|.+........ ...|+.+.|.|.+.| .|++..+.|+++|..+..... ......++.. +.
T Consensus 103 ~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~ 181 (218)
T 2rgs_A 103 PIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSK 181 (218)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEE
T ss_pred cceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEE
Confidence 1 111111 2223343322221111 124889999999998 455559999999876431111 0111223322 23
Q ss_pred EEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
|.+.....+|.|.|+|.|.|.....
T Consensus 182 l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 182 LNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp EEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred EEECHHHcCCCCeEEEEEEcCCCCC
Confidence 5555555557999999999977543
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=132.19 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=108.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--------------ccccc-ccCCeEe-----cCCeEEEEec
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--------------TLHHN-IAQGIIM-----TNQSLVLQRV 67 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--------------~~~~~-~~~~~~~-----~~~~l~i~~~ 67 (207)
+...+....+.+|++++|.|.+.+ +.+ .+.|+|... ..... ...++.. ...+|.|.++
T Consensus 5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v 82 (240)
T 3q5y_A 5 VVQSPRHIIKEKGGRSVLTCIPIS-GHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL 82 (240)
T ss_dssp CEEECSEEEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred cccCcceeeecCCCcEEEEEEeCC-CCc-eEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence 345566678899999999999875 445 899999221 10000 0011111 1236999999
Q ss_pred CCCCCeeeEEEEeee--CCCCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcC
Q psy10918 68 NRQSAGNYTCVGFNI--EGDGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNN 138 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~--~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~ 138 (207)
+.+|+|.|.|.+.+. ..........|.|.. +|.+....+....+..|+.+.|.|.+.+. |++..+.|+++|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g 162 (240)
T 3q5y_A 83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG 162 (240)
T ss_dssp CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence 999999999999732 222223345677763 22222112222223458899999999984 545589999998
Q ss_pred ceeeeccce---eEEeecCc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 139 SAETVNVAQ---AHILRSGT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 139 ~~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
..+...... .....++. .+.|.|.....+| .|.|+|.|.|......
T Consensus 163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~ 215 (240)
T 3q5y_A 163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 215 (240)
T ss_dssp EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence 775422111 11122232 2348888888888 7799999999875543
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=133.67 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=108.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--------------Cccccccc-c-CCeEec-----CCeEEEEe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--------------NKTLHHNI-A-QGIIMT-----NQSLVLQR 66 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--------------~~~~~~~~-~-~~~~~~-----~~~l~i~~ 66 (207)
+...+....+.+|++++|.| ..+.+.+ .+.|+|. +....... . .++... ..+|.|.+
T Consensus 5 v~~~p~~v~v~~G~~v~L~C-~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 82 (245)
T 4ei6_B 5 VLQIPSHQIIDMGQMVTLNC-DPVSNHL-YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP 82 (245)
T ss_dssp CEEECSEEEEETTCCEEEEE-ECCTTCC-EEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred eEeCCceEEecCCCCEEEEE-EcCCCCC-EEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence 44556677889999999999 5566666 9999982 11111110 0 122211 23799999
Q ss_pred cCCCCCeeeEEEEeeeC---CCCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEE
Q psy10918 67 VNRQSAGNYTCVGFNIE---GDGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTF 136 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~---~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~ 136 (207)
++.+|+|.|.|.+.+.. .........|.|.. +|.+....+....+..|+.+.|.|.+.+.++ +..+.|++
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~ 162 (245)
T 4ei6_B 83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (245)
T ss_dssp CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEE
Confidence 99999999999998532 11223345677763 2322222222222345899999999998544 45899999
Q ss_pred cCceeeeccceeE--Ee-----ecCc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 137 NNSAETVNVAQAH--IL-----RSGT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 137 ~~~~~~~~~~~~~--~~-----~~~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
+|..+........ .. .++. .+.|.|.....+| .|.|+|.|.|......
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 163 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp TTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 9876542211000 00 1222 2347788777777 9999999999765443
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=131.06 Aligned_cols=170 Identities=16% Similarity=0.266 Sum_probs=107.2
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cc---c-c--c--c---------ccCCeEe----cC--CeEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KT---L-H--H--N---------IAQGIIM----TN--QSLVL 64 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~---~-~--~--~---------~~~~~~~----~~--~~l~i 64 (207)
+....+.+|++++|.|.+.+.+ .+ .+.|++++ .. + . . . ...++.. .+ .+|.|
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNY-WMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGS-EEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCc-cEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 3556788999999999998765 44 89999964 11 1 0 0 0 0112221 11 27999
Q ss_pred EecCCCCCeeeEEEEeeeCCC--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEc
Q psy10918 65 QRVNRQSAGNYTCVGFNIEGD--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFN 137 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~ 137 (207)
.+++..|+|.|.|.+.+..+. .......|.|.. +|.+....+ ...+.+|+.+.|.|.+.+. |.|..+.|+++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 164 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG 164 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC-CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc-ccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence 999999999999999875422 111345677763 222221111 1124578999999999987 66559999998
Q ss_pred CceeeeccceeEEeecC---ceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 138 NSAETVNVAQAHILRSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 138 ~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+............ ..+ ..+.|.|.+...++ |.|+|.|.|..|...+
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 213 (220)
T 1pz5_B 165 ALSSGVRTVSSVL-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDL 213 (220)
T ss_dssp TCCTTEEECCCEE-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred CcccceEEcCCcc-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEee
Confidence 7631100000001 112 13458888887766 9999999999986533
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=130.85 Aligned_cols=174 Identities=12% Similarity=0.096 Sum_probs=108.4
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCC----CcEEEEEECC--cccc---c-------cccCCeEe--c--CCeEEEE
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPP----VYKVEWRHNN--KTLH---H-------NIAQGIIM--T--NQSLVLQ 65 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~~i~W~~~~--~~~~---~-------~~~~~~~~--~--~~~l~i~ 65 (207)
+.+.+.+....+.+|++++|.|.+.+.+. ...+.|+++. ..+. . ....++.. . ..+|.|.
T Consensus 16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 95 (268)
T 1x9q_A 16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKIN 95 (268)
T ss_dssp CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEEC
Confidence 34455566778899999999999987762 2389999853 2110 0 00112221 1 2369999
Q ss_pred ecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcc----------------------cCCCCceeeeeeCCcEEEEEEe
Q psy10918 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTC----------------------KPHQQRVLGVARQEKVNISCEV 123 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~----------------------~~~~~~~~~~~~g~~~~l~C~~ 123 (207)
+++.+|+|.|.|.+.+..+........|.|...+.. ....+....+.+|+.++|.|.+
T Consensus 96 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~ 175 (268)
T 1x9q_A 96 RVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVT 175 (268)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEE
T ss_pred CCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEe
Confidence 999999999999998764432233455666643210 0111223456789999999999
Q ss_pred ccCCC-CceEEEEEcC--ceeeec------------------cceeEEeec--CceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 124 DANPP-DVKFSWTFNN--SAETVN------------------VAQAHILRS--GTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 124 ~~~~~-~~~~~W~~~~--~~~~~~------------------~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+.++ ...+.|+++. ...... ..+.....+ .....|.|.+++.+|+|.|.|.|.|.
T Consensus 176 ~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 176 SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 98764 2499999853 221100 011222221 23457999999999999999999974
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=154.71 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred CcccCCCcEEEEeEeccC--CCCcEEEEEECCccccccccC----------CeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNKTLHHNIAQ----------GIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+|++++|.|.+.+. +.+ .+.|++++..+...... ........|.|.+++..|+|.|+|.+.|.
T Consensus 234 ~~v~~G~~v~L~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 312 (772)
T 3v2a_R 234 IELSVGEKLVLNCTARTELNVGI-DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG 312 (772)
T ss_dssp EEEETTCCEEEEEEEEECTTCCC-EEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECS
T ss_pred eEEecCCcEEEEEEEecCCCCce-eEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcC
Confidence 578899999999999863 344 89999998775432111 11223357999999999999999999987
Q ss_pred CCCCccceEEEEEEeCCcccCCC--CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEE
Q psy10918 83 EGDGESNAFFLNVMYSPTCKPHQ--QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA 160 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (207)
.+.. ...+.|.|..+|.+.... .....+..|+.+.|.|.+.+.|.+ .+.|+++|..+... ..+. ....|.
T Consensus 313 ~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~g~~l~~~---~~~~---~~~~L~ 384 (772)
T 3v2a_R 313 LMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP-EIKWYKNGIPLESN---HTIK---AGHVLT 384 (772)
T ss_dssp SCEE-EEEEEEEEECCCC--------------------------------------------------------------
T ss_pred Ccce-eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC-eEEEEECCEeCCCC---ceEc---cceeEE
Confidence 6654 557778888777543222 223456789999999999998887 99999988765431 1111 234688
Q ss_pred EecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCC
Q psy10918 161 YSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 161 i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~ 198 (207)
|.++..+|+|.|+|.|.|..|....+..+.+.+..+|.
T Consensus 385 i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~ 422 (772)
T 3v2a_R 385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 422 (772)
T ss_dssp --------------------------------------
T ss_pred EecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCc
Confidence 99999999999999999998876555555555444443
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=127.54 Aligned_cols=169 Identities=17% Similarity=0.298 Sum_probs=107.4
Q ss_pred cCCCcccCCCcEEEEeEeccCCC----CcEEEEEECC--cccc----c----------cccCCeEec------CCeEEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP----VYKVEWRHNN--KTLH----H----------NIAQGIIMT------NQSLVLQ 65 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~----~~~i~W~~~~--~~~~----~----------~~~~~~~~~------~~~l~i~ 65 (207)
+....+.+|++++|.|.+.+.+. + .+.|+|.. ..+. . ....++... ..+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKV-GVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCC-EEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCce-eEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 45678899999999999987663 4 89999853 2210 0 001122211 2479999
Q ss_pred ecCCCCCeeeEEEEeeeCC------C--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceE
Q psy10918 66 RVNRQSAGNYTCVGFNIEG------D--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKF 132 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~ 132 (207)
+++.+|+|.|.|.+.+..+ . .......|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.+..+
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p~~v 164 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTL 164 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEE
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCCEEE
Confidence 9999999999999998754 1 112235677763 2322211111 124678999999999986 655599
Q ss_pred EEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 133 SWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 133 ~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.|++++..+.... .......+. .+.|.|.....++ |.|+|.|.|..+...
T Consensus 165 ~W~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~ 217 (228)
T 3bae_H 165 TWNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK 217 (228)
T ss_dssp EEGGGTCCTTEEE-EEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred EEeeCCcccCceE-cCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence 9999876532111 111111222 3458888887766 999999999887653
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=130.20 Aligned_cols=167 Identities=17% Similarity=0.245 Sum_probs=107.1
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc---------------ccccCCeEec------CCeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH---------------HNIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~---------------~~~~~~~~~~------~~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.+ .+ .+.|++.. ..+. .....++... ..+|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 8 GGGLVKAGGSLILSCGVSNFRISAH-TMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeEecCCCCEEEEEEecCcccCCc-eEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 456789999999999998765 44 89999853 2111 0001122211 247999999
Q ss_pred CCCCCeeeEEEEeeeCC-----C--CccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEE
Q psy10918 68 NRQSAGNYTCVGFNIEG-----D--GESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWT 135 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~-----~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~ 135 (207)
+.+|+|.|.|.+.+..+ . .......|.|... |.+....+.. .+..|+.+.|.|.+.+. |.+..+.|+
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~ 165 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN 165 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence 99999999999987654 1 1123456777752 2222111111 24578999999999987 554599999
Q ss_pred EcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 136 FNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+++..+...........++. .+.|.|.+...+| |.|+|.|.|..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 98765211111111112222 2458888888888 9999999997654
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-20 Score=123.15 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=119.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe----cCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM----TNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+.. ....|.|.+++..|.|.|.|.+.|..|..
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~- 102 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE- 102 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCC-EEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE-
T ss_pred CceEEEECCCCEEEEEEEeecCCC-EEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce-
Confidence 444678889999999999999888 999999999887643222222 24579999999999999999999998876
Q ss_pred cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC----CCC-ceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 88 SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN----PPD-VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 88 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
...+.|.|..+|..+.. ......+..+.|.|..... |.. ..+.|.+++...... .............+.|.
T Consensus 103 ~~~~~l~v~~~P~~p~~---~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-~~~~~~~~~~~~~l~i~ 178 (215)
T 3mtr_A 103 SLEFILVQADTPSSPSI---DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-KWYDAKEASMEGIVTIV 178 (215)
T ss_dssp EEEEEEEECCCCCCCEE---EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-EEEEHHHHHHHTEEEEE
T ss_pred EEEEEEEECCCCCCCcc---eEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-cccccccccccccEEEC
Confidence 45677777766654321 1112356778888874332 221 147788766532110 00000011111458899
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
++...+.|.|+|.|.|..|....+..+.+.
T Consensus 179 ~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 179 GLKPETTYAVRLAALNGKGLGEISAASEFK 208 (215)
T ss_dssp CCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred CCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence 999999999999999999987766666544
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=130.19 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=108.7
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECCc--ccc---------------ccccCCeE--e----cCCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNK--TLH---------------HNIAQGII--M----TNQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~--~~~---------------~~~~~~~~--~----~~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+ .+ .+.|+++.. .+. .....++. . ...+|.|.+
T Consensus 29 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKASGYTFTSY-VMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred CCcEEecCCCCEEEEEeccCCccccc-EEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 3467788999999999987765 34 899999531 110 00011221 1 124699999
Q ss_pred cCCCCCeeeEEEEeeeC-CCC---ccceEEEEEEeC---------------CcccCCCCceeeeeeCCcEEEEEEeccCC
Q psy10918 67 VNRQSAGNYTCVGFNIE-GDG---ESNAFFLNVMYS---------------PTCKPHQQRVLGVARQEKVNISCEVDANP 127 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~-~~~---~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 127 (207)
++.+|+|.|.|.+.+.. +.. ......|.|..+ +......+....+.+|+.++|.|.+.+.+
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 99999999999998764 211 112345666651 11111123344578999999999999876
Q ss_pred CC-----ceEEEEEcC--ceeee-c----------cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 128 PD-----VKFSWTFNN--SAETV-N----------VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 128 ~~-----~~~~W~~~~--~~~~~-~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+ ..+.|++++ ..... . ..+......+....|.|.+++.+|+|.|.|.|.|..
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 53 389999963 22111 0 112222234445679999999999999999999853
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=133.89 Aligned_cols=173 Identities=14% Similarity=0.204 Sum_probs=106.9
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc------------cc-cc-CCeEec-----CCeEEEEecC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH------------HN-IA-QGIIMT-----NQSLVLQRVN 68 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~------------~~-~~-~~~~~~-----~~~l~i~~~~ 68 (207)
..+....+.+|++++|.|.+. .+.+ .+.|+|. +.... .. .. .++... +.+|.|.+++
T Consensus 31 ~~p~~v~v~~G~~v~L~C~~~-~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~ 108 (268)
T 3pl6_D 31 QTPSNKVTEKGKYVELRCDPI-SGHT-ALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTE 108 (268)
T ss_dssp CCCSEEEEETTCCEEEEEBCB-TTCC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCC
T ss_pred eCCCEEEecCCCCEEEEEEeC-CCCc-eEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCC
Confidence 344556788999999999986 3444 8999992 22110 00 00 122211 3469999999
Q ss_pred CCCCeeeEEEEeee-CCCCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCce
Q psy10918 69 RQSAGNYTCVGFNI-EGDGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSA 140 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~-~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~ 140 (207)
.+|+|.|+|.+.+. ..........|.|.. +|.+....+....+..|+.+.|.|.+.+.++ +..+.|+++|..
T Consensus 109 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~ 188 (268)
T 3pl6_D 109 RGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE 188 (268)
T ss_dssp GGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE
T ss_pred cccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE
Confidence 99999999999863 112223345677774 2222221222222345899999999998655 448999999877
Q ss_pred eeeccceeE--E-----eecCc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 141 ETVNVAQAH--I-----LRSGT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 141 ~~~~~~~~~--~-----~~~~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
+........ . ..++. .+.|.+.....+| .|.|+|.|.|......
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 189 VHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 243 (268)
T ss_dssp ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence 532211000 0 01222 2346777777777 9999999999875543
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-20 Score=123.97 Aligned_cols=170 Identities=16% Similarity=0.294 Sum_probs=107.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--cccc---------------ccccCCeEec------CCeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTLH---------------HNIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~~---------------~~~~~~~~~~------~~~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+.+. ...+.|+|.. .... .....++... ..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 87 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence 5678899999999999987542 2389999853 1110 0011122221 2369999999
Q ss_pred CCCCeeeEEEEeeeCC---C--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEE-c
Q psy10918 69 RQSAGNYTCVGFNIEG---D--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTF-N 137 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~---~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~-~ 137 (207)
.+|+|.|.|.+.+..+ . .......|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.+..+.|++ +
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (223)
T 1dee_B 88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC-ENSNPSSTVAVGCLAQDFLPDSITFSWKYKN 166 (223)
T ss_dssp GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT-TCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC-cccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence 9999999999987542 1 112344677763 2222211111 123578999999999987 5555999999 7
Q ss_pred CceeeeccceeEEeecCc---eEEEEEecCCC--CCCeEEEEEEecCCCCC
Q psy10918 138 NSAETVNVAQAHILRSGT---LSVVAYSPNSE--LDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~--~~~g~y~C~~~n~~g~~ 183 (207)
|..+............+. .+.|.|..... +|.|.|+|.|.|..+..
T Consensus 167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~ 217 (223)
T 1dee_B 167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK 217 (223)
T ss_dssp SCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred CCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence 766432000000111222 24577877766 78999999999988765
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-20 Score=123.68 Aligned_cols=169 Identities=12% Similarity=0.181 Sum_probs=106.4
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEECCc--ccc------c-----------cccCCeEec------CCeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNK--TLH------H-----------NIAQGIIMT------NQSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~~--~~~------~-----------~~~~~~~~~------~~~l~i~~ 66 (207)
....+.+|++++|.|.+.+.+ ....+.||+... ... . ....++... ..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 87 (221)
T 3m8o_H 8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS 87 (221)
T ss_dssp SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence 456688999999999997643 123899998431 110 0 001122111 12599999
Q ss_pred cCCCCCeeeEEEEeeeCC-CCccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEecc-CCC-CceEEEEEcCc
Q psy10918 67 VNRQSAGNYTCVGFNIEG-DGESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDA-NPP-DVKFSWTFNNS 139 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~-~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~~~~W~~~~~ 139 (207)
++.+|+|.|.|.+.+... ........|.|... |.+....+.. . ..|+.+.|.|.+.+ .|. ++.+.|++++.
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~ 165 (221)
T 3m8o_H 88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS-T-QPDGNVVIACLVQGFFPQEPLSVTWSESGQ 165 (221)
T ss_dssp CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS-C-CCTTEEEEEEEEEEEBSSCSEEEEESCCST
T ss_pred CCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc-c-ccCCCEEEEEEEEeeECCCCEEEEEEECCE
Confidence 999999999999987531 22334456777621 2221111111 1 57899999999998 565 46999999887
Q ss_pred eeeeccceeEE-eecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 140 AETVNVAQAHI-LRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 140 ~~~~~~~~~~~-~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+......... ..++. .+.|.|......|.|.|+|.|.|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 166 GVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp TCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred ECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 65322111111 12222 2358898899999999999999987543
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=132.15 Aligned_cols=165 Identities=13% Similarity=0.188 Sum_probs=101.8
Q ss_pred ccCCCcEEEEeEeccC---CCCcEEEEEECCccccccccC-------CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAV---PPVYKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~---~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+|++++|.|.+.+. |.+..+.|++++..+...... ........|.|.+++.+|+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 6799999999999876 544489999998665431100 011122469999999999999999999876643
Q ss_pred cc-ceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCce---EE
Q psy10918 87 ES-NAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGTL---SV 158 (207)
Q Consensus 87 ~~-~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---~~ 158 (207)
.. ..+.+ .+..+|.+....... ....|..+.|.|.+.+. |++..+.|+++|..+..... ......++.. +.
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~ 187 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPK-EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSK 187 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCG-GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCCh-HHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEE
Confidence 11 11111 122333332211111 11247789999999985 44458999999876532111 1112233332 23
Q ss_pred EEEecCCCCCCeEEEEEEecCCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
|.+......+.|.|+|.|.|....
T Consensus 188 l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 188 LNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEChhhcCCCCEEEEEEECCCCC
Confidence 555555555799999999997644
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=127.03 Aligned_cols=172 Identities=13% Similarity=0.226 Sum_probs=103.9
Q ss_pred cCCCcccCCCcEEEEeEeccCC-CCcEEEEEECCc--ccc-------c--------cccCCeEec------CCeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNK--TLH-------H--------NIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~~--~~~-------~--------~~~~~~~~~------~~~l~i~~~ 67 (207)
+....+.+|++++|.|.+.+.. ....+.|||... ... . ....++... ..+|+|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 3567789999999999987632 123799998431 100 0 000111111 124999999
Q ss_pred CCCCCeeeEEEEeeeC---CCCccceEEEEEE----eCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCc
Q psy10918 68 NRQSAGNYTCVGFNIE---GDGESNAFFLNVM----YSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNS 139 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~---~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~ 139 (207)
+.+|+|.|.|.+.+.. .........|.|. .+|.+....+ ...+..|+.+.|.|.+.+ .|.+..+.|++++.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecC-CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 9999999999998652 1111234467776 2232221111 123457899999999998 55555999999886
Q ss_pred eeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 140 AETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 140 ~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
........... ..+. .+.|.|.....+| |.|+|.|.|..+.....
T Consensus 166 ~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~ 213 (253)
T 3liz_H 166 SSGVHTFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 213 (253)
T ss_dssp CTTEEECCCEE-ETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEE
T ss_pred ecceEeCCccc-cCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceE
Confidence 42111111111 1121 2468898998889 99999999988765433
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=124.07 Aligned_cols=173 Identities=18% Similarity=0.291 Sum_probs=104.0
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEECC--cccc----c----------cccCCeEec----C--CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--KTLH----H----------NIAQGIIMT----N--QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~~~~----~----------~~~~~~~~~----~--~~l~i~~~~~ 69 (207)
....+.+|++++|.|.+.+.+ ....+.||+.. .... . ....++... + .+|.|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA 87 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence 556789999999999997654 12389999853 2110 0 001222221 1 2799999999
Q ss_pred CCCeeeEEEEeeeCC--C---CccceEEEEEEeC----CcccCCCCceeeeeeC-CcEEEEEEeccC-CCCceEEEEE-c
Q psy10918 70 QSAGNYTCVGFNIEG--D---GESNAFFLNVMYS----PTCKPHQQRVLGVARQ-EKVNISCEVDAN-PPDVKFSWTF-N 137 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~--~---~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~~~~~W~~-~ 137 (207)
+|+|.|.|.+.+..+ . .......|.|... |.+....+.. .+..| +.+.|.|.+.+. |.+..+.|++ +
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (232)
T 1dn0_B 88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDSITFSWKYKN 166 (232)
T ss_dssp GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence 999999999983221 1 1123456777652 2222111111 23467 899999999986 5545999999 8
Q ss_pred CceeeeccceeEEeecCc---eEEEEEecCCC--CCCeEEEEEEecCCCCCccc
Q psy10918 138 NSAETVNVAQAHILRSGT---LSVVAYSPNSE--LDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~--~~~g~y~C~~~n~~g~~~~~ 186 (207)
|..+............+. .+.|.|..... +|.|.|+|.|.|..+.....
T Consensus 167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~ 220 (232)
T 1dn0_B 167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKN 220 (232)
T ss_dssp SCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEE
T ss_pred CCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCccee
Confidence 776432000000111222 34578877776 78999999999998865434
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=131.43 Aligned_cols=177 Identities=12% Similarity=0.160 Sum_probs=108.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc-------------c--cccCCeEec-----CCeEEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH-------------H--NIAQGIIMT-----NQSLVL 64 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~-------------~--~~~~~~~~~-----~~~l~i 64 (207)
.+...+....+.+|++++|.|.+.+.+.+ .+.|++++ .... . ....++... +.+|.|
T Consensus 26 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 26 VVSQHPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCEE-EEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred eEEeCCCeEEecCCCeEEEEEEeCCCCCC-eEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 34455667788999999999999776655 89999964 1110 0 001122221 236999
Q ss_pred EecCCCCCeeeEEEEeeeCC----C-CccceEEEEEEeC------CcccCCCCceeeeeeCCcEEEEEEeccCCC-CceE
Q psy10918 65 QRVNRQSAGNYTCVGFNIEG----D-GESNAFFLNVMYS------PTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKF 132 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~~~----~-~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~ 132 (207)
.+++.+|+|.|+|.+.+..+ . .......|.|... |.+....+....+..|+.+.|.|.+.+.++ ++.+
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 184 (279)
T 2wbj_D 105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 184 (279)
T ss_dssp SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence 99999999999999987321 0 1122356777642 222111111112236889999999998744 3599
Q ss_pred EEEEcCceeeecccee--EE---e--ecCc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 133 SWTFNNSAETVNVAQA--HI---L--RSGT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 133 ~W~~~~~~~~~~~~~~--~~---~--~~~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
.|++++..+....... .. . .++. .+.|.|......| .|.|+|.|.|......
T Consensus 185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp EEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred EEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 9999987653221100 00 0 1222 2346676666654 6789999999876554
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-21 Score=136.65 Aligned_cols=165 Identities=13% Similarity=0.235 Sum_probs=105.2
Q ss_pred CCcccCCCcEEEEeEeccCC-CC--cEEEEEECC-cccccccc------CCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVP-PV--YKVEWRHNN-KTLHHNIA------QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~-~~--~~i~W~~~~-~~~~~~~~------~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
...+.+|+++.|.|.+.+.+ .+ ..+.|++++ ..+..... .......+.|.|.+++.+|+|.|+|.+.|..
T Consensus 122 ~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 201 (323)
T 2wqr_A 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH 201 (323)
T ss_dssp HHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred HHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCC
Confidence 34577899999999998754 33 389999975 44332110 0011123469999999999999999999865
Q ss_pred CCCccceEEEEEE------eCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce---eEEeec
Q psy10918 84 GDGESNAFFLNVM------YSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ---AHILRS 153 (207)
Q Consensus 84 ~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~---~~~~~~ 153 (207)
+.. ...+.+. .+|.+........ ...|+.+.|.|.+.+. |++..+.|+++|..+...... .....+
T Consensus 202 ~~~---~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~ 277 (323)
T 2wqr_A 202 LPR---ALMRSTTKTSGPRAAPEVYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKG 277 (323)
T ss_dssp SSS---CEEEEECCCCSCCBCCEEEEEECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSS
T ss_pred CCC---CeeeEEEccCCCCCCCEEEEeCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCC
Confidence 322 2234442 2333221111111 1238999999999984 444589999998865422110 111112
Q ss_pred Cc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 154 GT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 154 ~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+. .+.|.|.....+|+|.|+|.|.|....
T Consensus 278 g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 278 SGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp SSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 22 346889888999999999999998865
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=136.07 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=107.1
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEEC--Cccccc---------------cccCCeEec------CCeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHN--NKTLHH---------------NIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~--~~~~~~---------------~~~~~~~~~------~~~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+.+ ....+.|+|+ +..+.. ....++... ..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (344)
T 1za6_B 8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR 87 (344)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence 456788999999999998763 2238999997 332210 011122211 2379999999
Q ss_pred CCCCeeeEEEEeeeCCCCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
.+|+|.|.|.+.+..+.. .....|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.++.+.|++++..+..
T Consensus 88 ~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~ 165 (344)
T 1za6_B 88 SEDTAVYFCTRSLNMAYW-GQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV 165 (344)
T ss_dssp GGGCEEEEEEETTTTCEE-CCCEEEEECSSCCBCCEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred cccCEEEEEEEecCccee-cCcEEEEEecCCCCCCeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence 999999999998743222 3345677763 2222211111 224588999999999987 44359999998865321
Q ss_pred ccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 144 NVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 144 ~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.........++. .+.|.|.++..+| |.|+|.|.|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~ 207 (344)
T 1za6_B 166 HTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 207 (344)
T ss_dssp EECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred eECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence 111111111221 2368888888778 99999999988753
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=122.25 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=104.1
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc------c-------cccCCeEe-----cCCeEEEEecC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH------H-------NIAQGIIM-----TNQSLVLQRVN 68 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~------~-------~~~~~~~~-----~~~~l~i~~~~ 68 (207)
.+.+....+.+|++++|.|.+.. +.+ .+.|+|++. ... . ....++.. ...+|.|.+++
T Consensus 3 ~q~p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 3 TQSPRNKVAVTGGKVTLSCQQTN-NHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEECSEEEEETTCCEEEEEEESS-CCS-EEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred ccCCCeeEEeCCCcEEEEEEeCC-CCc-eEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34566778899999999999854 444 899999642 110 0 00112221 12369999999
Q ss_pred CCCCeeeEEEEeeeCC----CCccceEEEEEEeC------CcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEc
Q psy10918 69 RQSAGNYTCVGFNIEG----DGESNAFFLNVMYS------PTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFN 137 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~----~~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~ 137 (207)
.+|+|.|.|.+.+..+ ........|.|... |.+....+....+..|+.+.|.|.+.+. |.+..+.|+++
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 9999999999987632 11123346777652 2222212222223468999999999986 54559999999
Q ss_pred Cceeeeccce---eEEeecCce---EEEEEecCCCCC-CeEEEEEEecCCCCC
Q psy10918 138 NSAETVNVAQ---AHILRSGTL---SVVAYSPNSELD-YGTLICWGSNKIGHQ 183 (207)
Q Consensus 138 ~~~~~~~~~~---~~~~~~~~~---~~l~i~~~~~~~-~g~y~C~~~n~~g~~ 183 (207)
|..+...... .....++.. +.|.|......| .|.|+|.|.|.....
T Consensus 161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 213 (238)
T 1bec_A 161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 213 (238)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence 8765322111 011223322 223333333333 678999999975443
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=123.01 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=106.0
Q ss_pred eeecCCCcccCCCcEEEEeEeccC--CCCcEEEEEECC--cccc----c--c--------ccCCeEec--C----CeEEE
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNN--KTLH----H--N--------IAQGIIMT--N----QSLVL 64 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~--~~~~----~--~--------~~~~~~~~--~----~~l~i 64 (207)
.+.+....+.+|++++|.|.+.+. +.. .+.||+.. ..+. . . ...++... . .+|.|
T Consensus 5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 5 EQPEISISRPRDETAQISCKVFIESFRSV-TIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp ECSCSEEEEETTSCEEEEEEECCGGGGGC-CEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred cccCCEEEEeCCCcEEEEEEeeccccCcc-EEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 344566778899999999998764 334 89999853 1110 0 0 01122211 1 26999
Q ss_pred EecCCCCCeeeEEEEeee---CCCCccceEEEEEEe---------CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCce
Q psy10918 65 QRVNRQSAGNYTCVGFNI---EGDGESNAFFLNVMY---------SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVK 131 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~---~~~~~~~~~~l~v~~---------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~ 131 (207)
.+++.+|+|.|.|.+.+. ..........|.|.. +|......+....+..|+.+.|.|.+.+. |.++.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 999999999999999863 111112345677762 12211111221223457889999999986 65459
Q ss_pred EEEEE-cCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 132 FSWTF-NNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 132 ~~W~~-~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
+.|++ +|..+...........++. .+.|.|..... + |.|+|.|.|..+.....
T Consensus 164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~ 220 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGAD 220 (230)
T ss_dssp EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSC
T ss_pred EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCcee
Confidence 99999 7664421111111122232 24577776665 4 99999999988755333
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-21 Score=132.64 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=108.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----cccc---------C-CeEe-----cCCeEEEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----HNIA---------Q-GIIM-----TNQSLVLQ 65 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----~~~~---------~-~~~~-----~~~~l~i~ 65 (207)
.+...+....+.+|++++|.|.+.+ +.+ .+.|+|.. .... .... . ++.. .+.+|.|.
T Consensus 29 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 106 (270)
T 3qib_D 29 KVIQTPRYLVKGQGQKAKMRCIPEK-GHP-VVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ 106 (270)
T ss_dssp CCEEECSEEEEETTSCEEEEEECCT-TCC-EEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred eEEeCCCeEEEcCCCCEEEEEEecC-CCc-eEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence 4455566678899999999999865 444 89999832 1110 0000 0 1111 13469999
Q ss_pred ecCCCCCeeeEEEEeeeCC---CCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEE
Q psy10918 66 RVNRQSAGNYTCVGFNIEG---DGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWT 135 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~---~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~ 135 (207)
+++.+|+|.|.|.+.+... ........|.|.. +|.+....+....+..|+.+.|.|.+.+ .|.+..+.|+
T Consensus 107 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~ 186 (270)
T 3qib_D 107 SSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 186 (270)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEE
Confidence 9999999999999985321 1222345677775 2222211111112335899999999998 4545589999
Q ss_pred EcCceeeecccee--EE---e--ecCc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 136 FNNSAETVNVAQA--HI---L--RSGT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 136 ~~~~~~~~~~~~~--~~---~--~~~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
++|..+....... .. . .++. .+.|.+.....+| .|.|+|.|.|......
T Consensus 187 k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 187 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp ETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence 9987654221100 00 0 1222 2346777777777 9999999999876543
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=125.04 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=96.1
Q ss_pred cCCCcEEEEeEeccCCC---CcEEEEEECCcccccccc-CCeEecCCeEEEEe---cCCC---CCeeeEEEEeeeCCCCc
Q psy10918 18 KEDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHNIA-QGIIMTNQSLVLQR---VNRQ---SAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~---~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~---~~~~---d~g~Y~C~~~~~~~~~~ 87 (207)
.+|+++.|.|.+.+.++ ...+.|++++..+..... ......++.+.+.. +... |+|.|+|.+.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~- 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA- 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS-
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc-
Confidence 68999999999987642 239999999977654221 11223344454432 3334 4999999999876543
Q ss_pred cceEEE----EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCce---EE
Q psy10918 88 SNAFFL----NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGTL---SV 158 (207)
Q Consensus 88 ~~~~~l----~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---~~ 158 (207)
.....+ .+..+|.+....+.... ..|..+.|.|.+.|. |++..+.|+++|..+..... ......++.. +.
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~ 173 (207)
T 1l6x_A 95 PIEKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSK 173 (207)
T ss_dssp CEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEE
T ss_pred ceEEEeccCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEE
Confidence 111122 12233332222211111 245569999999985 44459999999876532111 1111223332 23
Q ss_pred EEEecCCCCCCeEEEEEEecCCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
|.+......|.|.|+|.|.|....
T Consensus 174 l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 174 LTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEECHHHcCCCCEEEEEEEcCCcC
Confidence 455555556799999999997643
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=121.36 Aligned_cols=169 Identities=15% Similarity=0.280 Sum_probs=102.9
Q ss_pred cCCCcccCCCcEEEEeEeccCC-CCcEEEEEECC--cccc----c----------cccCCeEec------CCeEEEEecC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--KTLH----H----------NIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~~~~----~----------~~~~~~~~~------~~~l~i~~~~ 68 (207)
+....+.+|++++|.|.+.+.+ ....+.|+++. ..+. . ....++... ..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 4566789999999999998754 12389999863 2110 0 001122211 1379999999
Q ss_pred CCCCeeeEEEEeeeCCC--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCcee
Q psy10918 69 RQSAGNYTCVGFNIEGD--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAE 141 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~ 141 (207)
..|+|.|.|.+.+..+. .......|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.+..+.|++++..+
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 165 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS 165 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence 99999999999876421 122345677763 2222211111 124578999999999987 655599999987653
Q ss_pred eeccceeEEeecCceEE-EEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 142 TVNVAQAHILRSGTLSV-VAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 142 ~~~~~~~~~~~~~~~~~-l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..... ......+.... ..+......+ |.|+|.|.|..+..
T Consensus 166 ~~~~~-~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 166 DVHTF-PAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp SCCBC-CCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred ceEec-CcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence 21111 11111222111 1122444456 99999999988765
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=126.35 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=104.1
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----ccc---------cC-CeEecC-Ce--EEEEecCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----HNI---------AQ-GIIMTN-QS--LVLQRVNRQ 70 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----~~~---------~~-~~~~~~-~~--l~i~~~~~~ 70 (207)
+.+....+.+|++++|.|.+.+.+.+ .+.|||.. .... ... .. ++.... .. |.|.+++.+
T Consensus 6 q~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~ 84 (253)
T 3to4_D 6 QNPRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS 84 (253)
T ss_dssp EECSEEEEESSCCEEEEEECSCTTCC-CEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred eCCCeEEEeCCCcEEEEEEeCCCCcc-eEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence 44566778899999999998777766 89999832 1100 000 00 111111 11 999999999
Q ss_pred CCeeeEEEEeeeCCC-----CccceEEEEEEeC------CcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcC
Q psy10918 71 SAGNYTCVGFNIEGD-----GESNAFFLNVMYS------PTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNN 138 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~-----~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~ 138 (207)
|+|.|+|.+.+..+. .......|.|... |.+....+....+..|..+.|.|.+.+. |++..+.|+++|
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 164 (253)
T 3to4_D 85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (253)
T ss_dssp SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence 999999999754321 1122345667632 2211111111112246899999999984 545589999998
Q ss_pred ceeeeccceeE--Ee-----ecCce---EEEEEecCCCCC-CeEEEEEEecCCCC
Q psy10918 139 SAETVNVAQAH--IL-----RSGTL---SVVAYSPNSELD-YGTLICWGSNKIGH 182 (207)
Q Consensus 139 ~~~~~~~~~~~--~~-----~~~~~---~~l~i~~~~~~~-~g~y~C~~~n~~g~ 182 (207)
..+........ .. .++.. +.|.+......| .|.|+|.|.|..-.
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence 76543211100 00 12322 467777777777 77999999997543
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=126.17 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=106.5
Q ss_pred cCCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCccc-cccccCC------eEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTL-HHNIAQG------IIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~-~~~~~~~------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+....+.+|++++|.|.+.+. |. +..+.|+++|..+ ....... .......|.|.+++.+|+|.|+|.+.+.
T Consensus 20 p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~ 99 (231)
T 2w59_A 20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHE 99 (231)
T ss_dssp CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred cChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcC
Confidence 344567799999999999874 53 2499999999877 3211100 0111235999999999999999999976
Q ss_pred CCCCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccc-e--eEEe-
Q psy10918 83 EGDGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVA-Q--AHIL- 151 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~--~~~~- 151 (207)
.+. ..+.+.|.. +|.+....+.... ..+..+.|.|.+.+.++ .+.+.|+++|..+..... . ....
T Consensus 100 ~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~ 175 (231)
T 2w59_A 100 ELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEE 175 (231)
T ss_dssp TCS---SCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECC
T ss_pred CCC---CceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCc
Confidence 543 233444432 2322211111111 22457999999998643 359999999887543321 0 0111
Q ss_pred -------ec-Cc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 152 -------RS-GT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 152 -------~~-~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+ +. .+.|.|......|.|.|+|.|.|.....
T Consensus 176 ~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 176 RTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp TTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 22 33 2457788778888999999999977543
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=137.20 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=105.6
Q ss_pred ccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccC-----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 17 IKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ-----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
+.+|+.+.|.|.+.+. |.+..+.|++++..+...... ........|.|.+++..| |.|.|.+.|..+... ..
T Consensus 135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~ 212 (444)
T 1igt_B 135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK-VD 212 (444)
T ss_dssp CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEE-EE
T ss_pred CCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcc-eE
Confidence 4689999999999875 554499999998764211000 111122458888888889 999999998876531 11
Q ss_pred EEEEE------------------EeCCcccCCCCceee-eeeCCcEEEEEEeccCC---CCceEEEEEcCceeeeccce-
Q psy10918 91 FFLNV------------------MYSPTCKPHQQRVLG-VARQEKVNISCEVDANP---PDVKFSWTFNNSAETVNVAQ- 147 (207)
Q Consensus 91 ~~l~v------------------~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~~~~- 147 (207)
..+.+ ..+|.+....+.... +..|+.+.|.|.+.+.+ +++.+.|++++..+......
T Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~ 292 (444)
T 1igt_B 213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT 292 (444)
T ss_dssp EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBC
T ss_pred EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCccccc
Confidence 11211 011221111111111 36799999999999874 43599999998764322111
Q ss_pred eEEeecC---ceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 148 AHILRSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 148 ~~~~~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.....++ ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 293 ~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 331 (444)
T 1igt_B 293 HREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331 (444)
T ss_dssp CEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred ceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence 1111112 23469999999999999999999988866
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-20 Score=139.00 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=103.8
Q ss_pred ccCCCcEEEEeEeccCC---CCcEEEEEECCccccccccCC-eE------ecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHHNIAQG-II------MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~~~~~~-~~------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+|+++.|.|.+.+.+ ....+.|++++..+....... .. ...+.|.|.+++.+|+|.|.|.+.|..+..
T Consensus 252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 331 (444)
T 1igt_B 252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331 (444)
T ss_dssp HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence 57899999999998863 334899999998775422111 11 122469999999999999999999887654
Q ss_pred cc-ceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCc---eEE
Q psy10918 87 ES-NAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGT---LSV 158 (207)
Q Consensus 87 ~~-~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~---~~~ 158 (207)
.. ..+.+ .+..+|.+....+....+..| .+.|.|.+.+. |++..+.|+++|..+..... ......++. .+.
T Consensus 332 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~ 410 (444)
T 1igt_B 332 PIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSK 410 (444)
T ss_dssp CEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred ceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEE
Confidence 21 12211 222344433222211122334 49999999985 55459999999876521110 011122333 234
Q ss_pred EEEecCCCCCCeEEEEEEecCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|.+.....+|.|.|+|.|.|...
T Consensus 411 l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 411 LRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp EEEEHHHHHTCCCEEEEEECTTS
T ss_pred EEEChHHhcCCCeEEEEEECCCc
Confidence 66666667789999999999764
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=125.11 Aligned_cols=167 Identities=15% Similarity=0.258 Sum_probs=105.4
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc------c---------cccCCeEe------cCCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH------H---------NIAQGIIM------TNQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~------~---------~~~~~~~~------~~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+ .+ .+.|+|+. ..+. . ....++.. ...+|.|.+
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSY-WMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCc-eEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 3456788999999999998765 34 89999863 2211 0 00112221 124699999
Q ss_pred cCCCCCeeeEEEEeeeCCC--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCc
Q psy10918 67 VNRQSAGNYTCVGFNIEGD--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNS 139 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~ 139 (207)
++.+|+|.|.|.+.+..+. .......|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.+..+.|++++.
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~ 170 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 170 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence 9999999999999874321 112334677764 2322211111 124578999999999985 5555999999886
Q ss_pred eeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 140 AETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 140 ~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+......... ..+. .+.|.|.....+| |.|+|.|.|....
T Consensus 171 ~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 171 SSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp CTTEEECCCEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCceEecCcee-cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 53211111111 1121 3468888888878 9999999996654
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=125.53 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCCcccCCCcEEEEeEeccCC--CCcEEEEEECCc--ccc------c---------cccCCeEec------CCeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNK--TLH------H---------NIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~--~~~------~---------~~~~~~~~~------~~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.+ .+ .+.||+... .+. . ....++... ..+|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 8 GGGLVKPGGSLRLSCAASGFTFSSY-AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGC-CEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred CCEEEcCCCcEEEEEEeccccCCCc-eEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 455788999999999998754 34 899998541 110 0 001122211 236999999
Q ss_pred CCCCCeeeEEEEeeeCCC------------CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCc
Q psy10918 68 NRQSAGNYTCVGFNIEGD------------GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDV 130 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~ 130 (207)
+.+|+|.|.|.+.+..+. .......|.|.. +|.+....+.. .+..|..+.|.|.+.+. |.+.
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~-~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSCC
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcc-cccCCCcEEEEEEEeeEECCCc
Confidence 999999999999876541 112334677764 23333222222 24578899999999986 6555
Q ss_pred eEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 131 KFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 131 ~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+.|++++..+...........++. .+.|.|.+....| |.|+|.|.|....
T Consensus 166 ~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~ 219 (257)
T 3bn9_D 166 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 219 (257)
T ss_dssp EEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred EEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence 9999998865321111111112222 2346677777667 9999999996543
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=130.58 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=105.3
Q ss_pred cccCCCcEEEEeEeccCCC--CcEEEEEECCcccccccc-CCe------EecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPP--VYKVEWRHNNKTLHHNIA-QGI------IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~--~~~i~W~~~~~~~~~~~~-~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.+.+|+++.|.|.+.+.++ +..+.| ++..+..... ... ....+.|.|.+++..|+|.|+|.+.|..+..
T Consensus 258 ~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~ 335 (475)
T 1iga_A 258 DLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT 335 (475)
T ss_pred HhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence 3578999999999987643 138999 4444332111 011 1123469999999999999999999887764
Q ss_pred ccceEEEEE---EeCCcccCCCCceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCceeeeccc-ee--EEe---ecCc-
Q psy10918 87 ESNAFFLNV---MYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVA-QA--HIL---RSGT- 155 (207)
Q Consensus 87 ~~~~~~l~v---~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~-~~--~~~---~~~~- 155 (207)
. ....+.+ ..+|.+....+....+..|+.+.|.|.+.+.+ +++.+.|+++|..+..... .. ... .++.
T Consensus 336 ~-~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~ 414 (475)
T 1iga_A 336 P-LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTF 414 (475)
T ss_pred c-eEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcE
Confidence 2 2223322 34444332222222356788999999999864 3459999999876543210 00 111 1222
Q ss_pred --eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 156 --LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 156 --~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+.|.+......|.|.|+|.|.|.....
T Consensus 415 ~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 415 AVTSILRVAAEDWKKGDTFSCMVGHEALPL 444 (475)
T ss_pred EEEEEEEEChHHhcCCCEEEEEEEcCCCCC
Confidence 2457777777788999999999976543
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=128.20 Aligned_cols=161 Identities=12% Similarity=0.175 Sum_probs=98.1
Q ss_pred CcEEEEeEeccC-CCCcEEEEEECCccccccccC--CeEec-----CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 21 SDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ--GIIMT-----NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 21 ~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~--~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
+.+.|.|.+.+. |....+.|+++|..+...... ....+ ...|.|.+....|+|.|+|.+.|..+.. ...+.
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~~ 103 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTF-EDSTK 103 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEE-EEEEC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCc-ceeee
Confidence 589999999875 433499999999887643211 01111 1247777777789999999999865322 11111
Q ss_pred EEEE---eCCcccCCCCceeeeeeCCcEEEEEEeccCCC-C--ceEEEEEcCceeeeccceeEE-eecC---ceEEEEEe
Q psy10918 93 LNVM---YSPTCKPHQQRVLGVARQEKVNISCEVDANPP-D--VKFSWTFNNSAETVNVAQAHI-LRSG---TLSVVAYS 162 (207)
Q Consensus 93 l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~--~~~~W~~~~~~~~~~~~~~~~-~~~~---~~~~l~i~ 162 (207)
+.+. ..|......+....+..|+.+.|.|.+.+.++ + ..+.|++++............ ..++ ..+.|.|.
T Consensus 104 ~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~ 183 (323)
T 2wqr_A 104 KCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG 183 (323)
T ss_dssp CCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECC
T ss_pred cCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEEC
Confidence 1000 11222112222223567999999999988643 3 389999975322111111111 1111 13468999
Q ss_pred cCCCCCCeEEEEEEecCCCC
Q psy10918 163 PNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~ 182 (207)
++..+|+|.|+|.|.|..+.
T Consensus 184 ~~~~~D~G~Y~C~a~n~~~~ 203 (323)
T 2wqr_A 184 TRDWIEGETYQCRVTHPHLP 203 (323)
T ss_dssp HHHHHTTCCEEEEEECTTSS
T ss_pred HHHccCCCCEEEEEECCCCC
Confidence 99999999999999998643
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=122.57 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=103.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCC---CcEEEEEECCc--cc------c------c--------cccCCeEec------CC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHNNK--TL------H------H--------NIAQGIIMT------NQ 60 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~~~--~~------~------~--------~~~~~~~~~------~~ 60 (207)
+....+.+|++++|.|.+.+.+. ...+.||+... .. . . ....++... ..
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 35677889999999999876432 23899998431 10 0 0 001112111 12
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCC------------CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEec
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGD------------GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVD 124 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~ 124 (207)
+|.|.+++.+|+|.|.|.+.+..+. .......|.|.. +|.+....+ ...+..|+.+.|.|.+.
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECC-CCCC--TTEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECC-ChhhccCCcEEEEEEEe
Confidence 4999999999999999999865320 112233566652 222221111 12235689999999999
Q ss_pred cC-CCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 125 AN-PPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 125 ~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
+. |++..+.|++++..+...........++. .+.|.|......| |.|+|.|.|..+.....
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~ 230 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 230 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEE
Confidence 84 54557999998764322111111222232 2457888888888 99999999987655333
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=137.28 Aligned_cols=177 Identities=13% Similarity=0.121 Sum_probs=113.6
Q ss_pred CCcccCC--CcEEEEeEeccCCCCcEEEEEEC--CccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 14 PDHIKED--SDVYFDCDIVAVPPVYKVEWRHN--NKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 14 ~~~v~~g--~~v~l~C~~~~~~~~~~i~W~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
...+.+| ++++|.|.+.+ |.+ .+.|+++ +..+..............|.|.+++..|.|.|+|.+.+......+.
T Consensus 135 ~~~v~~G~~~~v~L~C~~~~-p~~-~v~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~ 212 (772)
T 3v2a_R 135 VVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI 212 (772)
T ss_dssp EEEEESSCCCEEEECCCCSC-SSC-CEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECC
T ss_pred eEEEecCCCCeEEEEccCCC-CCc-EEEEEecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEE
Confidence 3456779 88999999976 555 9999997 6555443333344456779999999999999999998643322233
Q ss_pred eEEEEEEeCCc--ccCCCCceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCceeeeccceeEE-------eecCceEEE
Q psy10918 90 AFFLNVMYSPT--CKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHI-------LRSGTLSVV 159 (207)
Q Consensus 90 ~~~l~v~~~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~-------~~~~~~~~l 159 (207)
.+.+.+...+. ..........+..|+.+.|.|.+.+.+ +...+.|++++..+......... ........|
T Consensus 213 ~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 292 (772)
T 3v2a_R 213 MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 292 (772)
T ss_dssp EEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEE
T ss_pred EEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEE
Confidence 34444432221 111122223578999999999999753 23499999987754321111000 111234579
Q ss_pred EEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 160 AYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 160 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|.+++.+|+|.|+|.+.|..+..+....+.|.
T Consensus 293 ~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 325 (772)
T 3v2a_R 293 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325 (772)
T ss_dssp EESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE
T ss_pred EECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe
Confidence 999999999999999999988866555555444
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-19 Score=122.42 Aligned_cols=175 Identities=16% Similarity=0.191 Sum_probs=106.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--cc---c---c-------cccCCeEec-----CCeEEEEec
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TL---H---H-------NIAQGIIMT-----NQSLVLQRV 67 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~---~---~-------~~~~~~~~~-----~~~l~i~~~ 67 (207)
+.+.+....+.+|++++|.|.+.. +.+ .+.|++... .. . . ....++... ..+|.|.++
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 83 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQNL-NHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA 83 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEECS-CCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeCC-CCC-EEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence 445566778899999999999853 444 899998531 11 0 0 001122221 247999999
Q ss_pred CCCCCeeeEEEEeeeCC--CCccceEEEEEEe------CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcC
Q psy10918 68 NRQSAGNYTCVGFNIEG--DGESNAFFLNVMY------SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNN 138 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~--~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~ 138 (207)
+.+|+|.|.|.+.+... ........|.|.. +|.+....+....+..|+.+.|.|.+.+. |.+..+.|+++|
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 163 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 163 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 99999999999987511 1112234567763 22222111111122368899999999986 544599999998
Q ss_pred ceeeecccee--EE-----eecCc---eEEEEEecCCCC-CCeEEEEEEecCCCCCc
Q psy10918 139 SAETVNVAQA--HI-----LRSGT---LSVVAYSPNSEL-DYGTLICWGSNKIGHQR 184 (207)
Q Consensus 139 ~~~~~~~~~~--~~-----~~~~~---~~~l~i~~~~~~-~~g~y~C~~~n~~g~~~ 184 (207)
..+....... .. ..++. .+.|.|...... +.|.|+|.|.|......
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 7654221100 00 01222 234777666554 57889999999876543
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=128.97 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=102.5
Q ss_pred cCCCcEEEEeEeccC-CC-CcEEEEEECCccccccccC-------CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 18 KEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.+|+.++|.|.+.+. |. +..+.|++++......... ........|.|..++..|.|.|.|.+.|..+....
T Consensus 139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 218 (475)
T 1iga_A 139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQD 218 (475)
T ss_pred CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCcee
Confidence 579999999999886 54 3499999987542211000 01111235788888889999999999988764323
Q ss_pred ceEEEEEEe------------------CCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcCceeeeccce-
Q psy10918 89 NAFFLNVMY------------------SPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNVAQ- 147 (207)
Q Consensus 89 ~~~~l~v~~------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~- 147 (207)
..+.+.|.. +|.+....+....+..|+.+.|.|.+.+.++ ++.+.| ++..+......
T Consensus 219 ~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~ 296 (475)
T 1iga_A 219 VTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGP 296 (475)
T ss_pred eeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccC
Confidence 333333311 1221111122222478999999999998754 259999 44332211110
Q ss_pred eEEeecC---ceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 148 AHILRSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 148 ~~~~~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.....++ ..+.|.|.++..+|+|.|+|.|.|..+...
T Consensus 297 ~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~ 336 (475)
T 1iga_A 297 PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP 336 (475)
T ss_pred ceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc
Confidence 0011112 234689999999999999999999988753
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=132.12 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=108.3
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc---------------ccccCCeEe--c----CCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH---------------HNIAQGIIM--T----NQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~---------------~~~~~~~~~--~----~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+ .+ .+.|+++. .... .....++.. + ...|.|.+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNF-VIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCceEEcCCCCEEEEEEecCccccCc-EEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 3456788999999999998765 44 89999842 2110 000112221 1 13699999
Q ss_pred cCCCCCeeeEEEEeeeCC---------C--CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCc
Q psy10918 67 VNRQSAGNYTCVGFNIEG---------D--GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDV 130 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~ 130 (207)
++.+|+|.|+|.+.+..+ . .......|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCC
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCe
Confidence 999999999999998754 1 122345677764 2322211111 234689999999999987 5435
Q ss_pred eEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 131 KFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 131 ~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+.|++++..+...........++. .+.|.|.++..+| |.|+|.|.|..+..
T Consensus 165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~ 219 (457)
T 1hzh_H 165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 219 (457)
T ss_dssp EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE
T ss_pred EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc
Confidence 9999998864321111111111221 2368898888889 99999999977653
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=120.23 Aligned_cols=172 Identities=19% Similarity=0.268 Sum_probs=99.9
Q ss_pred CCCcccCCCcEEEEeEeccCC--CC-cEEEEEECCc--ccc-------ccc----------cCCeEec------CCeEEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP--PV-YKVEWRHNNK--TLH-------HNI----------AQGIIMT------NQSLVL 64 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~--~~-~~i~W~~~~~--~~~-------~~~----------~~~~~~~------~~~l~i 64 (207)
....+.+|++++|.|.+.+.+ .. ..+.||+... ... ... ..++... ..+|.|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (232)
T 3qhz_H 8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM 87 (232)
T ss_dssp CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence 446788999999999986532 12 1449998421 100 000 0122111 125999
Q ss_pred EecCCCCCeeeEEEEeeeCC-------CCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceE
Q psy10918 65 QRVNRQSAGNYTCVGFNIEG-------DGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKF 132 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~ 132 (207)
.+++.+|+|.|.|.+.+..+ ........|.|.. +|.+....+. ..+..|+.+.|.|.+.+.++ +..+
T Consensus 88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~~~~v 166 (232)
T 3qhz_H 88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTV 166 (232)
T ss_dssp CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSSCCEE
T ss_pred CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEeccc-ccccCCCcEEEEEEEeeEeCCCeEE
Confidence 99999999999999986421 1123344566652 2222211111 23456899999999998544 5578
Q ss_pred EEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 133 SWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 133 ~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
.|++++..+...........++. .+.|.|......| |.|+|.|.|..+.....
T Consensus 167 ~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~ 222 (232)
T 3qhz_H 167 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 222 (232)
T ss_dssp EEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEE
T ss_pred EEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEE
Confidence 89998764322111111122222 2458888888888 99999999987665434
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=126.11 Aligned_cols=167 Identities=12% Similarity=0.161 Sum_probs=99.7
Q ss_pred CcccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCC------eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 15 DHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQG------IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+.+|++++|.|.+.+. |.+..+.|++++..+....... .......|.|.+++.+| |.|+|.+.|..+...
T Consensus 130 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~ 208 (344)
T 1za6_B 130 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 208 (344)
T ss_dssp CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred ccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 345789999999999876 5423999999987642110001 11112368888888777 999999998766421
Q ss_pred -cceEEEE----------------------EEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 88 -SNAFFLN----------------------VMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 88 -~~~~~l~----------------------v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
...+.+. +..+|.+....+... ...|..+.|.|.+.|. |+.+.+.|+++|..+..
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~ 287 (344)
T 1za6_B 209 VDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 287 (344)
T ss_dssp EEEEECCCCC--------------------CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCS
T ss_pred ceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCC
Confidence 1111110 112232221111111 1246669999999985 43459999999876532
Q ss_pred ccc-eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 144 NVA-QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 144 ~~~-~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
... ......++. .+.|.+.....+|.|.|+|.|.|.....
T Consensus 288 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~ 331 (344)
T 1za6_B 288 YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 331 (344)
T ss_dssp EEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred cEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence 111 111122333 2345565556667999999999976543
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=121.74 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=95.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec---CCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.....+.+|+++.|.|.+.+. +.|++++..+... ...... ..+|.|.+++.+|+|.|+|.+.|..|....
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 79 (289)
T 3mjg_X 7 GPELVLNVSSTFVLTCSGSAP-----VVWERMSQEPPQE--MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETD 79 (289)
T ss_dssp CSEEECCTTCCEEEEEEESSC-----CEEEBTTBCCSEE--EEECTTSCEEEEEEECSCCGGGCEEEEEECCC------C
T ss_pred CCeEEEeCCCcEEEEEeccce-----EEEECCCCCcccc--eeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcC
Confidence 344567899999999998764 8999999887421 111111 257999999999999999999988765333
Q ss_pred ceEEEEEEeC-CcccCC-CC-c--eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 89 NAFFLNVMYS-PTCKPH-QQ-R--VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 89 ~~~~l~v~~~-~~~~~~-~~-~--~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
....+.+... |..+.. .. . ...+.+|+.+.|.|.+. .|.+ .+.|++++....... .. +.....+
T Consensus 80 ~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~-~v~w~~~~~~~~~~~---~~--~~~~~~~---- 148 (289)
T 3mjg_X 80 ERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQL-VVTLHEKKGDVALPV---PY--DHQRGFS---- 148 (289)
T ss_dssp CCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTS-CEEEEESSCCSCCCC---CE--ETTTEEE----
T ss_pred cEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCc-eEEEEeCCCCCccce---ee--cCCcCee----
Confidence 3344555433 222211 11 1 14467899999999998 6665 889988653222110 01 1111111
Q ss_pred CCCCCCeEEEEEEecCCCCC
Q psy10918 164 NSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~ 183 (207)
...|+|.|+|.|.|..+..
T Consensus 149 -~~~d~G~Y~C~a~n~~~~~ 167 (289)
T 3mjg_X 149 -GIFEDRSYICKTTIGDREV 167 (289)
T ss_dssp -ECCCSSEEEEEEEETTEEE
T ss_pred -eeccCcEEEEEEEeCCcee
Confidence 2569999999999876543
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=129.63 Aligned_cols=168 Identities=15% Similarity=0.252 Sum_probs=108.6
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc----c-----------cccCCeEec------CCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH----H-----------NIAQGIIMT------NQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~----~-----------~~~~~~~~~------~~~l~i~~ 66 (207)
.....+.+|++++|.|.+.+.+ .+ .+.|++++ ..+. . ....++... ..+|.|.+
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTY-TIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSS 84 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGC-CCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECS
T ss_pred CCCeEecCCCCEEEEEEccCCcccCc-eEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECC
Confidence 3556788999999999998763 34 89999963 2210 0 001122211 23799999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCcee
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAE 141 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~ 141 (207)
++.+|+|.|.|.+.+..+.. .....|.|.. +|.+....+. ..+..|+.+.|.|.+.+. |.+..+.|++++...
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~ 162 (434)
T 1igy_B 85 LTSDDSAVYYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 162 (434)
T ss_dssp BCGGGCSEECCCCSSSSCCC-CCCEECEECCSCCBCCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCS
T ss_pred CChHHCEEEEEEEEcccccc-CCceEEEEccCCCCCCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCC
Confidence 99999999999998754332 3345677763 2322211111 224689999999999987 554599999987642
Q ss_pred eeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 142 TVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 142 ~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
...... .....+. .+.|.|.++..+| |.|+|.|.|..+...
T Consensus 163 ~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~ 206 (434)
T 1igy_B 163 GVHTFP-AVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK 206 (434)
T ss_dssp SEEECC-CEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC
T ss_pred CeEecC-ceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc
Confidence 211000 0111121 2458888888888 999999999988653
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=128.77 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=97.7
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEec------CCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMT------NQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.+.+|+.+.|.|.+.+. |.+..+.|++++..+........... ...|.|.+++.+| |.|+|.+.|..+.. .
T Consensus 143 ~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~-~ 220 (457)
T 1hzh_H 143 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-K 220 (457)
T ss_dssp CCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE-E
T ss_pred cccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc-c
Confidence 45789999999999876 54239999999865431100011111 1368999998889 99999999865432 1
Q ss_pred ceEEEEEEe-----------------CCcccCCCCceee-eeeCCcEEEEEEeccCCCC---ceEEEEEcCceeeeccce
Q psy10918 89 NAFFLNVMY-----------------SPTCKPHQQRVLG-VARQEKVNISCEVDANPPD---VKFSWTFNNSAETVNVAQ 147 (207)
Q Consensus 89 ~~~~l~v~~-----------------~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~---~~~~W~~~~~~~~~~~~~ 147 (207)
....+.+.. +|.+....+.... +..|+.+.|.|.+.+.+++ ..+.|++++..+......
T Consensus 221 ~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~ 300 (457)
T 1hzh_H 221 VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK 300 (457)
T ss_dssp EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEE
T ss_pred eeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccc
Confidence 112222111 1211111111111 4569999999999987653 499999998765322111
Q ss_pred eEE-eecCceEEEEEecCCCCC---CeEEEEEEecCCCCC
Q psy10918 148 AHI-LRSGTLSVVAYSPNSELD---YGTLICWGSNKIGHQ 183 (207)
Q Consensus 148 ~~~-~~~~~~~~l~i~~~~~~~---~g~y~C~~~n~~g~~ 183 (207)
... ..++.........+...| +|.|+|.|.|..+..
T Consensus 301 ~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~ 340 (457)
T 1hzh_H 301 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 340 (457)
T ss_dssp EEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred cceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence 111 122322222222244445 999999999876544
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=123.07 Aligned_cols=165 Identities=12% Similarity=0.164 Sum_probs=103.9
Q ss_pred ccCCCcEEEEeEeccC---CCCcEEEEEECCcccccccc-------CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAV---PPVYKVEWRHNNKTLHHNIA-------QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~---~~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+..|++++|.|.+.+. +....|.|++++..+..... .........|.|..++.+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999876 43347999999866532110 0111122369999999999999999998776533
Q ss_pred cc-ceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce-eEEeecCc---eEE
Q psy10918 87 ES-NAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ-AHILRSGT---LSV 158 (207)
Q Consensus 87 ~~-~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~---~~~ 158 (207)
.. ..+.+ .+..+|.+...... .....|+.+.|.|.+.+. |+.+.|.|+++|..+...... .....++. .+.
T Consensus 260 ~~~~~v~~~~~~~~~P~v~v~~~~-~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~ 338 (376)
T 2aty_A 260 PIEKTISKTKGRPKAPQLYTIPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSK 338 (376)
T ss_pred ceEEEEcCCCCCCcCCeEEeeCCC-HHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEE
Confidence 11 11111 22334443322222 122357899999999986 445699999998764221111 11122333 344
Q ss_pred EEEecCCCCCCeEEEEEEecCCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
|.+.....+|.|.|+|.|.|..-.
T Consensus 339 L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 339 LNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred EEEcHHHhCCCCcEEEEEEeCCCC
Confidence 667666777899999999997643
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-17 Score=122.85 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=108.4
Q ss_pred CcccCCCcEEEEeEeccC-CCCcEEEEEECCcccccccc-CCe-------EecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA-QGI-------IMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~-~~~-------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
..+.+|+.++|.|.+.+. |....|+|++++..+..... ... ....+.|.|......|.|.|.|.+.|..+.
T Consensus 307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~ 386 (512)
T 1zvo_C 307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP 386 (512)
T ss_pred HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence 446689999999999875 43448999999987652111 111 111235889888889999999999987654
Q ss_pred CccceEEEEE-----EeCCcccCCCCceeeeeeCCcEE-EEEEeccCC-CCceEEEEEcCceeeeccce---eEEeecCc
Q psy10918 86 GESNAFFLNV-----MYSPTCKPHQQRVLGVARQEKVN-ISCEVDANP-PDVKFSWTFNNSAETVNVAQ---AHILRSGT 155 (207)
Q Consensus 86 ~~~~~~~l~v-----~~~~~~~~~~~~~~~~~~g~~~~-l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~---~~~~~~~~ 155 (207)
.....+. .. ..+|.+....+.. .|+.+. |.|.+.|.+ +...+.|+++|..+...... .....++.
T Consensus 387 ~~~~~~~-~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~ 461 (512)
T 1zvo_C 387 PQRLMAL-REPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGST 461 (512)
T ss_pred CCceeEE-eecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCC
Confidence 4211221 11 1223322211111 678899 999999864 44589999998875432111 11122332
Q ss_pred ----eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 156 ----LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 156 ----~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
.+.|.+.....+|.|.|+|.|.|............+-+
T Consensus 462 ~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v 503 (512)
T 1zvo_C 462 TFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEV 503 (512)
T ss_pred EEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEe
Confidence 23566666677779999999999876554444444443
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=117.98 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=100.4
Q ss_pred cCCCcccCCCcEEEEeEeccC-CCCcEEEEEECCc--ccc-------c--------cccCCeEec------CCeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNK--TLH-------H--------NIAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~--~~~-------~--------~~~~~~~~~------~~~l~i~~~ 67 (207)
+....+.+|++++|.|.+.+. .....+.||+... .+. . ....++... ..+|+|.++
T Consensus 6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 85 (248)
T 3u2s_H 6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL 85 (248)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 456678899999999998652 2223799998431 100 0 001122211 124999999
Q ss_pred CCCCCeeeEEEEeeeC---------------------CCCccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEEEE
Q psy10918 68 NRQSAGNYTCVGFNIE---------------------GDGESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNISCE 122 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~---------------------~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~ 122 (207)
+.+|+|.|.|.+.+.. .........|.|.. +|.+....+. .....|+.+.|.|.
T Consensus 86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~~~L~C~ 164 (248)
T 3u2s_H 86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCL 164 (248)
T ss_dssp CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC-------CEEEEEEE
T ss_pred CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCC-ccccCCCcEEEEEE
Confidence 9999999999998641 11112234566652 2222211111 12346889999999
Q ss_pred eccC-CCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 123 VDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 123 ~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+.+. |.+..+.|++++..............++. .+.|.+......+ |.|+|.|.|..+...
T Consensus 165 ~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~ 229 (248)
T 3u2s_H 165 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 229 (248)
T ss_dssp EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEE
T ss_pred EeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcc
Confidence 9985 43568999998764322111111222232 2457788877778 999999999876543
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=116.24 Aligned_cols=170 Identities=20% Similarity=0.242 Sum_probs=101.3
Q ss_pred CCCcccCCCcEEEEeEeccC-CCCcEEEEEECCc--ccc------c---------cccCCeEe--cC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNK--TLH------H---------NIAQGIIM--TN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~--~~~------~---------~~~~~~~~--~~----~~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+. .....+.||+... ... . ....++.. +. .+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (230)
T 3n9g_H 8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLR 87 (230)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 35678899999999998652 1223799998421 100 0 00112221 11 239999999
Q ss_pred CCCCeeeEEEEeeeCC-----C--CccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEE
Q psy10918 69 RQSAGNYTCVGFNIEG-----D--GESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTF 136 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~-----~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~ 136 (207)
.+|+|.|.|.+.+..+ . .......|.|... |.+....+ ...+..|+.+.|.|.+.+.++ ++.+.|
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~~P~~~~v~W-- 164 (230)
T 3n9g_H 88 SEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW-- 164 (230)
T ss_dssp GGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECC-CCCCCTTCEEEEEEEEEEEBSSCCEEEE--
T ss_pred hhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCC-CccccCCCCEEEEEEEEeEECCCEEEEE--
Confidence 9999999999976431 0 1123445666522 22211111 112357899999999998543 558999
Q ss_pred cCceeeeccce--eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 137 NNSAETVNVAQ--AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 137 ~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
++..+...... .....++. .+.|.|......| |.|+|.|.|..+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~ 218 (230)
T 3n9g_H 165 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 218 (230)
T ss_dssp GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEE
T ss_pred CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceE
Confidence 55443211111 11112222 2468888888889 99999999987655433
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=105.52 Aligned_cols=161 Identities=9% Similarity=0.063 Sum_probs=106.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....|.+|+++.|+|.+.... +..+.|.. .+..............|.|.+++. | |.|.|.+. ..+......+
T Consensus 6 P~~~~V~~G~Sv~l~Cs~~c~~-p~~~~~~t---~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~-c~~~~~~~~~ 78 (185)
T 1iam_A 6 PSKVILPRGGSVLVTCSTSCDQ-PKLLGIET---PLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSN-CPDGQSTAKT 78 (185)
T ss_dssp SSEEEEETTEEEEEEEEECSSS-CSEEEEEC---SSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEE-CSSCEEEEEC
T ss_pred CCCcEEeCCCCEEEEEEccCCC-CccceEEe---eCCCccEeccCCceeEEEEEecCc-C-CEEEEEEE-CCCCceEEEE
Confidence 4556789999999999996543 32577753 111100000001124589999973 4 99999985 4445567788
Q ss_pred EEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 92 FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 92 ~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.|.|+.+|......+....+.+|+.++|.|.+.+..|+ ..|.|++++..+.... ........+|.+.....+|.
T Consensus 79 ~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~----~~~~~~~~tl~~~~~reD~g 154 (185)
T 1iam_A 79 FLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP----AVGEPAEVTTTVLVRRDHHG 154 (185)
T ss_dssp EEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE----CCTTTEEEEEEEECCSSCSS
T ss_pred EEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc----CCCccccEEEEEeceeccCC
Confidence 89999888765555544447799999999999996553 3589999987754321 11112233577766666666
Q ss_pred eEEEEEEecCCCCC
Q psy10918 170 GTLICWGSNKIGHQ 183 (207)
Q Consensus 170 g~y~C~~~n~~g~~ 183 (207)
+.|+|.|.|.++..
T Consensus 155 ~~~sC~A~~~l~~~ 168 (185)
T 1iam_A 155 AQFSCRTELDLRPQ 168 (185)
T ss_dssp CEEEEEEEEECGGG
T ss_pred CeEEEEEEecCccc
Confidence 69999999988744
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=119.45 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=97.3
Q ss_pred ccCCCcEEEEeEeccCC---CCcEEEEEECCccccccccCCe-------EecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHHNIAQGI-------IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+..|+.++|.|.+.+.. .+..+.|+++|..+........ ....+.|.|......|.|.|.|.+.+..+..
T Consensus 36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~ 115 (240)
T 4acp_A 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 115 (240)
T ss_dssp HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence 45699999999998864 3448999999988754211111 1111346676666678999999999866532
Q ss_pred -ccceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCc---eEE
Q psy10918 87 -ESNAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGT---LSV 158 (207)
Q Consensus 87 -~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~---~~~ 158 (207)
....+.+ .+..+|.+....+... ...|..+.|.|.+.+. |++..+.|+++|..+..... ......++. .+.
T Consensus 116 ~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~ 194 (240)
T 4acp_A 116 PIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSK 194 (240)
T ss_dssp CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred cccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEE
Confidence 1212211 1123333322222111 1247899999999995 55468999999876431110 111122333 234
Q ss_pred EEEecCCCCCCeEEEEEEecCCC
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|.+......+.|.|+|.|.+..-
T Consensus 195 L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 195 LTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEChHHhCCCCEEEEEEEECCC
Confidence 66665555678999999999653
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=108.29 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=99.3
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--cccc--------cccCCeEec-------CCeEEEEecCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLHH--------NIAQGIIMT-------NQSLVLQRVNRQS 71 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~~--------~~~~~~~~~-------~~~l~i~~~~~~d 71 (207)
.+.+....+.+|++++|.|.+.+.. + .+.|+|... .+.. ....++... ..+|.|.+++.+|
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~-~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 5 EQSPSALSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp EESCSEEEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred EECCCeEEEccCCcEEEEEEEeCCC-e-EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 3445667789999999999987654 4 799998532 1110 011122211 1369999999999
Q ss_pred CeeeEEEEeeeCCC----------CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCce
Q psy10918 72 AGNYTCVGFNIEGD----------GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSA 140 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~----------~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~ 140 (207)
+|.|.|.+.+..+. .......|.|....... ..+... +.. ..+.|.|.+.+.++ ++.+.|+++ ..
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~-~~P~v~-~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~ 158 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPP-AKPSVF-IMK-NGTNVACLVKDFYPKEVTISLRSS-KK 158 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCC-CCCEEE-EEE-ETTEEEEEEEEESSSCCEEEEECS-SE
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCC-CCCeEE-EeC-CCCeEEEEEeeEeCCCeEEEEecC-Cc
Confidence 99999999876321 11234567777432111 122222 222 24799999998644 359999998 65
Q ss_pred eeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 141 ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+...........++..... ......+.|.|+|.|.|..+..
T Consensus 159 l~~~~~~~~~~~~g~y~~~--~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 159 IVEFDPAIVISPSGKYSAV--KLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EEECCCEEEECTTSSEEEE--ECEEESSTTTCEEEEEETTEEE
T ss_pred ccCCccceEEcCCCcEEEE--EeecccCCCcEEEEEEECCccE
Confidence 4322111122223332221 2233367899999999977543
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=102.10 Aligned_cols=91 Identities=21% Similarity=0.362 Sum_probs=72.1
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.|...+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+..++ .+|.|.+++.+|+|.|+|.+.|..|
T Consensus 15 ~f~~~p~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 93 (107)
T 3knb_B 15 CFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAG 93 (107)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred EEEeCCCcEEEeCCCcEEEEEEEEEecCC-EEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCC
Confidence 44556778889999999999999999988 99999999998765433333333 3699999999999999999999988
Q ss_pred CCccceEEEEEEeCC
Q psy10918 85 DGESNAFFLNVMYSP 99 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~ 99 (207)
.. ...+.|.|..+|
T Consensus 94 ~~-~~~~~l~V~~pP 107 (107)
T 3knb_B 94 EA-YAAAAVTVLEPP 107 (107)
T ss_dssp EE-EEEEEEEEEC--
T ss_pred EE-EEEEEEEEEcCC
Confidence 76 446778887654
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-19 Score=121.53 Aligned_cols=169 Identities=13% Similarity=0.149 Sum_probs=100.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCC--CcEEEEEECCccccccccC-------CeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP--VYKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+....+.+|++++|.|.+.+.++ +..+.| ++..+...... ........|.|.+++..|+|.|.|.+.+.
T Consensus 11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~ 88 (214)
T 1ow0_A 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP 88 (214)
T ss_dssp CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred cChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence 45566789999999999988754 238999 44443321000 00012235777788889999999999987
Q ss_pred CCCCccceEEEE---EEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeecc-ce--eEEe---e
Q psy10918 83 EGDGESNAFFLN---VMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNV-AQ--AHIL---R 152 (207)
Q Consensus 83 ~~~~~~~~~~l~---v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~-~~--~~~~---~ 152 (207)
.+... ....+. +..+|.+....+....+..|+.+.|.|.+.|. |+++.+.|+++|..+.... .. .... .
T Consensus 89 ~~~~~-~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 167 (214)
T 1ow0_A 89 ESKTP-LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQG 167 (214)
T ss_dssp SCSSC-EEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSS
T ss_pred CCCCc-eeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCC
Confidence 65331 112222 12334332222221124568889999999985 4445999999987654321 11 1222 2
Q ss_pred cCce---EEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 153 SGTL---SVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 153 ~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
++.. +.|.+......+.|.|+|.|.|.....
T Consensus 168 dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~ 201 (214)
T 1ow0_A 168 TTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL 201 (214)
T ss_dssp SCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred CCcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence 3332 234454444456899999999976543
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-19 Score=134.72 Aligned_cols=164 Identities=13% Similarity=0.177 Sum_probs=105.7
Q ss_pred ccCCCcEEEEeEeccCC---CCcEEEEEECCccccccccCC-------eEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHHNIAQG-------IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+|+++.|.|.+.+.+ ....+.|++++..+....... .....+.|.|.+++.+|+|.|.|.+.|..+..
T Consensus 242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 321 (434)
T 1igy_B 242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA 321 (434)
T ss_dssp HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence 78899999999998874 223899999998765321110 01123469999999999999999999887754
Q ss_pred c-cceEEE--EEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE--eecCc---eE
Q psy10918 87 E-SNAFFL--NVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI--LRSGT---LS 157 (207)
Q Consensus 87 ~-~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~---~~ 157 (207)
. ...+.+ .+..+|.+....... ....|..+.|.|.+.+. |++..+.|+++|..+... ..... ..++. .+
T Consensus 322 ~~~~~v~~~~~~~~~P~v~~~~~~~-~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s 399 (434)
T 1igy_B 322 PIEKTISKTKGKPRAPQVYTIPPPK-EQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENY-KNTQPIMDTDGSYFVYS 399 (434)
T ss_dssp CCCCCCCCCCSCCBCCCCEEECCCS-SSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCC-EECCCCCCSSSCEEEEE
T ss_pred ceeEEEeccCCCCcCCEEEEECCCH-HHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCc-eeccceeCCCCcEEEEE
Confidence 1 222222 223344432222211 12356679999999985 444599999998875311 11111 12232 23
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.|.+.....+|+|.|+|.|.|....
T Consensus 400 ~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 400 KLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred EEEECchhccCCCEEEEEEEcCCCC
Confidence 5677777777899999999997654
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=114.01 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=116.9
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--c--CCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--T--NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
.+.+|+.+.|.|.+.+.|.+ .+.|++++..+.......+.. . ...|.|.+++..|.|.|.|.+.|..|.. ...+
T Consensus 111 ~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~ 188 (389)
T 2jll_A 111 YSWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEY 188 (389)
T ss_dssp EECTTCCEEEEECEEEESCC-EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEE
T ss_pred EeccCCEEEEEEEEEecCCC-eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEE
Confidence 46789999999999998877 999999998887643222221 1 2469999999999999999999988865 3455
Q ss_pred EEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC----CC-CceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 92 FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN----PP-DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 92 ~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
.+.+...|..+. ... .....+..+.|.|..... +. ...+.|.+++.... ...........+.|.++..
T Consensus 189 ~l~v~~~P~~P~-~~~-~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~-----~~~~~~~~~~~~~i~~l~~ 261 (389)
T 2jll_A 189 ILALADVPSSPY-GVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW-----KIVRSHGVQTMVVLNNLEP 261 (389)
T ss_dssp EEEECCCCCCCE-EEE-EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCC-----EEEECSTTCSEEEECSCCT
T ss_pred EEEecCCCCCCc-ceE-EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCccc-----EEeeccCCcceEEECCccC
Confidence 566654443221 111 112245678888875322 21 12567777654321 1122233345688999999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEee--cccCCCCC
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIVS--AVTFHPPF 201 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~~--~~~~~~p~ 201 (207)
.+.+.|+|.|.|..|....+..+.+.. ..+|.+|.
T Consensus 262 ~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~ 298 (389)
T 2jll_A 262 NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298 (389)
T ss_dssp TCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC
T ss_pred CCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc
Confidence 999999999999998665444443332 23666664
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=112.19 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=105.7
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEe-cCCCCCeeeEEEEeeeCCCCccce
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQR-VNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~-~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
...+.+|+.+.|.|.+.+.|.+ .+.|++++..+.......... ....|.|.+ ++..|.|.|+|.+.|..|.. ...
T Consensus 113 ~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~ 190 (305)
T 2nzi_A 113 AVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKT 190 (305)
T ss_dssp CEEEETTCCEEEEEEEEEESCC-EEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEE-EEE
T ss_pred cEEecCCCEEEEEEEECCCCCC-EEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCce-eeE
Confidence 3456789999999999998887 999999998876543332222 234688888 99999999999999988875 456
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEE-cCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF-NNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
+.|.|...|..+.. .. .....+..+.|.|..........+.++. ...... .......... ....+.|.++...+.
T Consensus 191 ~~l~v~~~P~~p~~-~~-~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~-~~~w~~~~~~-~~~~~~i~~l~~~~~ 266 (305)
T 2nzi_A 191 VELDVADVPDPPRG-VK-VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATT-AERWLRVGQA-RETRYTVINLFGKTS 266 (305)
T ss_dssp EEEEEEBCCCCCEE-EE-EESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETT-SCCEEEEEEE-SSSEEEECSCCSSCE
T ss_pred EEEEEecCCCCCCC-ce-eeeccCCEEEEEEcCCccCCCCceeEEEEEEecCC-CCccEECccc-cCceEEecCCCCCCe
Confidence 77888866643211 11 1112456677777653221111122221 000000 0000001111 123588999999999
Q ss_pred eEEEEEEecCCCCCccce
Q psy10918 170 GTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~ 187 (207)
|.|+|.|.|..|....+.
T Consensus 267 y~~~~~A~N~~G~~~~S~ 284 (305)
T 2nzi_A 267 YQFRVIAENKFGLSKPSE 284 (305)
T ss_dssp EEEEEEEEETTEECCCCC
T ss_pred EEEEEEEEeCCcccCCcC
Confidence 999999999998665443
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=97.00 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=70.0
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.... .+..+...+..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 11 ~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 89 (100)
T 3knb_A 11 LPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD 89 (100)
T ss_dssp CCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred CCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEE
Confidence 3445567899999999999999998 999999998765432 23456666677789999999999999999999999987
Q ss_pred ccceEEEEe
Q psy10918 184 RVPCVFHIV 192 (207)
Q Consensus 184 ~~~~~~~v~ 192 (207)
+.++.+.|.
T Consensus 90 ~~~~~l~V~ 98 (100)
T 3knb_A 90 SATVNIHIR 98 (100)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 666555543
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-16 Score=104.05 Aligned_cols=161 Identities=12% Similarity=0.178 Sum_probs=107.1
Q ss_pred cCCCcccCCCcEEEEeEeccCCC---CcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
++...+..|+.++|.|.+.+..+ ++.++|+|++.++... ...|.+..++..|+|.|.|.+.+..+....
T Consensus 9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa--------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~t 80 (304)
T 3shs_A 9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------TATLTVADATSENAGSYKVTVQDTDTMTSV 80 (304)
T ss_dssp ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC--------cceEEeeeccccCCeEEEEEEEECCCCeee
Confidence 66667889999999999865433 4589999999775531 346888888999999999999987665422
Q ss_pred ceEEEEEEeCC--cccCCCCceeeeeeCCcEEEEEEe--cc-CCC----CceEEEEEcCceeeeccceeEEeecCceEEE
Q psy10918 89 NAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEV--DA-NPP----DVKFSWTFNNSAETVNVAQAHILRSGTLSVV 159 (207)
Q Consensus 89 ~~~~l~v~~~~--~~~~~~~~~~~~~~g~~~~l~C~~--~~-~~~----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 159 (207)
. -.+.|...+ .+....+.......+..+.|.+.+ .| .++ ..++.|++++..+. +. ..+
T Consensus 81 S-s~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is-----------gA-q~l 147 (304)
T 3shs_A 81 E-SEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID-----------TT-QDI 147 (304)
T ss_dssp E-CCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE-----------SS-SEE
T ss_pred e-eeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc-----------Cc-ccc
Confidence 1 123333322 111222333334456788888877 44 332 35999999987532 11 135
Q ss_pred EEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 160 AYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 160 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
.+......++|.|.|.+.|..+..-.+....|.+
T Consensus 148 T~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~ 181 (304)
T 3shs_A 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181 (304)
T ss_dssp EECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEE
T ss_pred ceeeEEecCCeEEEEEEEcCCCCcccccceEEEE
Confidence 6667788899999999999876443444444443
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=95.62 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=71.9
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.+.|.+ .+.|++++..+... .+..+........|.|.++..+|+|.|+|.|.|..|....
T Consensus 14 ~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~ 91 (114)
T 2cqv_A 14 PEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQES-EHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91 (114)
T ss_dssp CCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCCS-SSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC
T ss_pred CCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECcCC-CCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEE
Confidence 344567899999999999999887 99999998775432 2344444455678999999999999999999999997766
Q ss_pred ceEEEEeecccCCCCCCc
Q psy10918 186 PCVFHIVSAVTFHPPFNQ 203 (207)
Q Consensus 186 ~~~~~v~~~~~~~~p~~~ 203 (207)
.+.+. +.++|.+|...
T Consensus 92 ~~~l~--V~~~p~~P~~p 107 (114)
T 2cqv_A 92 QVNLT--VVDKPDPPAGT 107 (114)
T ss_dssp CEEEE--EECSCSCCCCC
T ss_pred EEEEE--EECCCCCCCCC
Confidence 65554 44666666544
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=97.50 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred eeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecC--CeEEEEecCCCCCeeeEEEE
Q psy10918 4 TRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTN--QSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 4 ~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~--~~l~i~~~~~~d~g~Y~C~~ 79 (207)
+..+|...+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+......++. ..+ .+|.|.+++.+|+|.|+|.+
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 34455566777889999999999999999988 99999999988764433332 222 36999999999999999999
Q ss_pred eeeCCCCccceEEEEEE
Q psy10918 80 FNIEGDGESNAFFLNVM 96 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v~ 96 (207)
.|..|.. +..+.|.|+
T Consensus 83 ~N~~G~~-~~~~~l~V~ 98 (100)
T 3knb_A 83 GNEFGSD-SATVNIHIR 98 (100)
T ss_dssp EETTEEE-EEEEEEEEE
T ss_pred EECCCEE-EEEEEEEEE
Confidence 9988865 446667765
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=98.48 Aligned_cols=84 Identities=15% Similarity=0.301 Sum_probs=68.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+.. ..+..+..++....|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 21 ~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 98 (107)
T 3knb_B 21 RPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLAA-SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA 98 (107)
T ss_dssp CCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC-CSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CcEEEeCCCcEEEEEEEEEecCC-EEEEEECcccccc-eeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEE
Confidence 34567899999999999999997 9999999987643 233455556667789999999999999999999999988666
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.|.|.
T Consensus 99 ~~l~V~ 104 (107)
T 3knb_B 99 AAVTVL 104 (107)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-18 Score=118.84 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=54.2
Q ss_pred CcccCCCcEEEEeEeccCCCCc--EEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC-------
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVY--KVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD------- 85 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~------- 85 (207)
..+.+|+.++|.|.+.+..+.. .|+|+|++..+...... ......+|.+...+.+|.+.|+|++.+..+.
T Consensus 96 ~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~-~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~ 174 (291)
T 1mq8_A 96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174 (291)
T ss_dssp SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC-BTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEE
T ss_pred ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC-CCCceEEEEeeeeeccCCceEEEEEEecCCccCCcccc
Confidence 4478899999999998754432 58999999887643211 1111234666666666777999999987542
Q ss_pred CccceEEEEEEeCCccc-CCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccceeEEeecCceEEEEEe
Q psy10918 86 GESNAFFLNVMYSPTCK-PHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 162 (207)
..+....|.|+++|... .... ...+.+|+.+.|.|.+.|.+++ ..+.|+++|+.+.... ..+++.......
T Consensus 175 ~~s~~~~L~V~~~P~~~~~~~~-p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~-----~~~g~~~~~~~~ 248 (291)
T 1mq8_A 175 NTSAPYQLQTFVLPATPPQLVS-PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDSFSAKAS 248 (291)
T ss_dssp ECCCCEECBC----------------------------------------------------------------------
T ss_pred ccccceEEEEEecCCCCceecC-CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee-----eecCCeEEEEEe
Confidence 23456678888876432 1111 1246789999999999998654 3699999988764321 112221111111
Q ss_pred -cCCC--CCCeEEEEEEecCCCCCccceEEEEeecccCCC
Q psy10918 163 -PNSE--LDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHP 199 (207)
Q Consensus 163 -~~~~--~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~ 199 (207)
.+.. ++.+.|.|.|.|..... .+...+.++.-|.|
T Consensus 249 ~~~~~~~~~~~~~~C~~~~~~~~~--~~~~~l~v~~~~~~ 286 (291)
T 1mq8_A 249 VSVTAEDEGTQRLTCAVILGNQSQ--ETLQTVTIYSFPAP 286 (291)
T ss_dssp ----------------------------------------
T ss_pred cceeEcCCCCEEEEEEEEeCCcce--EEEEEEEEEcCCCc
Confidence 1133 34566778887643333 34455555554444
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=117.14 Aligned_cols=173 Identities=15% Similarity=0.201 Sum_probs=104.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCC---CcEEEEEEC--Ccccc------c--------cccCCeEec------CCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHN--NKTLH------H--------NIAQGIIMT------NQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~--~~~~~------~--------~~~~~~~~~------~~~l~i~~ 66 (207)
+....+.+|++++|.|.+.+.+. ...+.||+. +..+. . ....++... ..+|.|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS 86 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence 45677889999999999976432 137999985 22110 0 001122211 24699999
Q ss_pred cCCCCCeeeEEEEeeeCC-----------C-CccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccC-CCC
Q psy10918 67 VNRQSAGNYTCVGFNIEG-----------D-GESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDAN-PPD 129 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~-----------~-~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~ 129 (207)
++.+|+|.|+|.+.+..+ . .......|.|... |.+....+.......++.+.|.|.+.+. |.+
T Consensus 87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p 166 (512)
T 1zvo_C 87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS 166 (512)
T ss_pred CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence 999999999999986532 0 1123456777632 2222111111101245889999999987 544
Q ss_pred ceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 130 VKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 130 ~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+.+.|++++..............++. .+.|.|...... .|.|+|.|.|..+....
T Consensus 167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~ 224 (512)
T 1zvo_C 167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKK 224 (512)
T ss_pred eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceE
Confidence 59999986543211100001111222 245778777776 89999999998876543
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-17 Score=110.30 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=98.1
Q ss_pred CCcccCCCcEEEEeEeccCC-CCcEEEEEECC--cccc------c---------cccCCeEec------CCeEEEEecCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--KTLH------H---------NIAQGIIMT------NQSLVLQRVNR 69 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~~~~------~---------~~~~~~~~~------~~~l~i~~~~~ 69 (207)
...+.+|++++|.|.+.+.. ....+.||+.. .... . ....++... ..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 57788999999999986532 22379999842 1110 0 001122111 12499999999
Q ss_pred CCCeeeEEEEeeeCC--------CCccceEEEEEEeCC----cccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEE
Q psy10918 70 QSAGNYTCVGFNIEG--------DGESNAFFLNVMYSP----TCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTF 136 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~--------~~~~~~~~l~v~~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~ 136 (207)
+|+|.|.|.+.+..+ ........|.|...+ .+.. .........|..+.|.|.+.+.++ ++.+.|
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-- 165 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFP-LAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 165 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEE-EEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEE-ecCcccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence 999999999976421 011223356664322 1111 111112347889999999998543 568999
Q ss_pred cCceeeeccce--eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 137 NNSAETVNVAQ--AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 137 ~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
++..+...... .....++. .+.|.|......| |.|+|.|.|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 216 (226)
T 3mlr_H 166 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 216 (226)
T ss_dssp GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCc
Confidence 44332211111 11112222 3468888888888 99999999987654
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=93.46 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=72.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...........+++|.|.+++..|+|.|.|.+.|..|..
T Consensus 11 i~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~- 88 (100)
T 2edj_A 11 ILQGPANQTLAVDGTALLKCKATGDPLP-VISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGET- 88 (100)
T ss_dssp EEECCCCEEEESSSEEEECCEEECSSCC-EEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCC-
T ss_pred EEeCcCCEEEcCCCcEEEEEEEEEcCCC-EEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCE-
Confidence 3445667788999999999999998887 89999999888754444444556789999999999999999999998876
Q ss_pred cceEEEEEEeC
Q psy10918 88 SNAFFLNVMYS 98 (207)
Q Consensus 88 ~~~~~l~v~~~ 98 (207)
...+.|.|..+
T Consensus 89 ~~~~~l~V~~~ 99 (100)
T 2edj_A 89 SWSAVLDVTES 99 (100)
T ss_dssp BCCEEEEEESC
T ss_pred EEEEEEEEecC
Confidence 55777887754
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=111.22 Aligned_cols=172 Identities=19% Similarity=0.248 Sum_probs=99.2
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEECCc--ccc------c---------cccCCeEec------CCeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNK--TLH------H---------NIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~~--~~~------~---------~~~~~~~~~------~~~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+.. ....+.|++... ... . ....++... ..+|.|.+++
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (256)
T 3sob_H 31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR 110 (256)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence 346788999999999986532 223799998421 110 0 001122111 1239999999
Q ss_pred CCCCeeeEEEEeeeCC----------CCccceEEEEEEeC----CcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEE
Q psy10918 69 RQSAGNYTCVGFNIEG----------DGESNAFFLNVMYS----PTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFS 133 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~----------~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~ 133 (207)
.+|+|.|+|.+.+..+ ........|.|... |.+....+ ...+..|+.+.|.|.+.+. |.+..+.
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~~~~p~~~~v~ 189 (256)
T 3sob_H 111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVS 189 (256)
T ss_dssp GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC-C-----TTEEEEEEEEEEEBSSCCEEE
T ss_pred cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC-CcccccCCcEEEEEEEEEEECCCeEEE
Confidence 9999999999975321 01123345666522 22211111 1134578999999999885 4356899
Q ss_pred EEEcCceeeeccce--eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 134 WTFNNSAETVNVAQ--AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 134 W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
| ++..+...... .....++. .+.|.|.....+| |.|+|.|.|..+.......
T Consensus 190 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~ 246 (256)
T 3sob_H 190 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 246 (256)
T ss_dssp E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred E--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEE
Confidence 9 55443211111 11112222 3468888888889 9999999998766543433
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=121.87 Aligned_cols=171 Identities=8% Similarity=-0.001 Sum_probs=105.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCC-CCCeeeEEEEeeeCCCCccceEEEEEE--
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGNYTCVGFNIEGDGESNAFFLNVM-- 96 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~~~~~~~~~~~l~v~-- 96 (207)
+..+.+.|.+.+.|.+ .+.|.++|..+.... ...+.|..+.. ...+.|.|.+.+..|......+.+.+.
T Consensus 91 ~g~l~v~c~~~g~P~p-~i~W~k~g~~~~~~~-------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~ 162 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLG-NPIWNISGDPTRTWN-------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPC 162 (731)
T ss_dssp SEEEEEEEEETTCCCC-SEEEEECCCCCSSCE-------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCC
T ss_pred cceEEEEEecCCCCcc-ceeEEEeCCcCCcee-------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccc
Confidence 4478999999999888 999999997754311 11233333212 223566665554444322222212111
Q ss_pred -eCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEE-EE--EcCceeeeccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 97 -YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS-WT--FNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 97 -~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
.+|.+. .+....+..|+.+.|.|.+.|.|.| .+. |+ +++..+.... ...+........|.|.++...|.|.|
T Consensus 163 ~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p-~i~~W~~~~~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~g~Y 238 (731)
T 2v5y_A 163 TRTPHFL--RIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKE-IKVTSSRRFIASFNVVNTTKRDAGKY 238 (731)
T ss_dssp SSSCEEC--CCCCEEEETTSCEEEEEEEESCCCT-TCEEEEEESSSCCEEEEE-EEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred ccccccc--cccceEEeCCCcEEEEEEeCCCCCC-ceeEEEecCCCccccccc-eEEeccccceEEEEEcccccccCeEE
Confidence 234443 2334567899999999999999987 666 88 5666543221 11111122245799999999999999
Q ss_pred EEEEecCCCC-CccceEEEEeecccCCCCCCce
Q psy10918 173 ICWGSNKIGH-QRVPCVFHIVSAVTFHPPFNQK 204 (207)
Q Consensus 173 ~C~~~n~~g~-~~~~~~~~v~~~~~~~~p~~~~ 204 (207)
+|.|.|..|. .+..+.+.| ..+|.+|....
T Consensus 239 ~c~A~n~~G~~~s~~~~l~V--~~~P~~~~~p~ 269 (731)
T 2v5y_A 239 RCMIRTEGGVGISNYAELVV--KEPPVPIAPPQ 269 (731)
T ss_dssp EEEEEETTEEEECCCEEEEE--ECCCCBSSCCE
T ss_pred EEEEECCCCCcceeeEEEEE--ecCCCCCCCcc
Confidence 9999999987 555555544 45566555443
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-16 Score=94.15 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=68.0
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-ceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-TLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+........+..++ ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 21 ~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 99 (116)
T 2kkq_A 21 KPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT 99 (116)
T ss_dssp CCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEE
T ss_pred CCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeE
Confidence 3445567899999999999999987 999999987765433334443333 34579999999999999999999999987
Q ss_pred ccceEEEEeec
Q psy10918 184 RVPCVFHIVSA 194 (207)
Q Consensus 184 ~~~~~~~v~~~ 194 (207)
...+.+.|...
T Consensus 100 ~~~~~l~V~~~ 110 (116)
T 2kkq_A 100 TCNTRLDVTAR 110 (116)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEeCC
Confidence 66655555543
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=104.31 Aligned_cols=159 Identities=9% Similarity=0.059 Sum_probs=104.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....|.+|+++.|+|.+.-. .+..+.|.-. +..............+.|.+++.+ |.|.|.+. ..+......+
T Consensus 6 P~~~~V~~G~sv~l~Cs~~c~-~p~~~~~~t~---l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~-~~~~~~~~~v 78 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTSCD-QPKLLGIETP---LPKKELLLPGNNRKVYELSNVQED--SQPMCYSN-CPDGQSTAKT 78 (291)
T ss_dssp CSEEEECTTCEEEEEEEECCS-SCSEEEEECS---SCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEE-CSSCEEEEEC
T ss_pred CCccEEcCCCeEEEEEeCCCC-CCccceEEec---CCCcccccCCCceEEEEEEecccC--CeEEEEEE-cCCccEEEEE
Confidence 456678999999999998643 3325888531 111000000001124788887743 57999985 4445556677
Q ss_pred EEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 92 FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 92 ~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.|.|..+|..+...+....+..|+.++|.|.+.+..+. ..|.|++++..+.... .........+.+...+.++.
T Consensus 79 ~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~----~~~~~~~~~l~~~~~~~D~g 154 (291)
T 1mq8_A 79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP----AVGEPAEVTTTVLVRRDHHG 154 (291)
T ss_dssp EEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE----CCBTTEEEEEECCCSSSCSS
T ss_pred EEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc----CCCCCceEEEEeeeeeccCC
Confidence 88998888766555443447789999999999987553 2699999987754322 11122234577777777777
Q ss_pred eEEEEEEecCCC
Q psy10918 170 GTLICWGSNKIG 181 (207)
Q Consensus 170 g~y~C~~~n~~g 181 (207)
+.|+|.|.|..+
T Consensus 155 ~~~~C~A~~~l~ 166 (291)
T 1mq8_A 155 ANFSCRTELDLR 166 (291)
T ss_dssp CEEEEEEEEECG
T ss_pred ceEEEEEEecCC
Confidence 899999999765
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=91.95 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=70.6
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+........+... .....|.|.++..+|+|.|+|.|.|..|...
T Consensus 15 ~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~ 93 (110)
T 2dm2_A 15 LKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93 (110)
T ss_dssp CCCEEEETTCCEEEEEEBCCSSCC-EEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEE
T ss_pred CcCeEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence 344567899999999999998887 99999998876543333344333 3345799999999999999999999999876
Q ss_pred cceEEEEeecccCCCCC
Q psy10918 185 VPCVFHIVSAVTFHPPF 201 (207)
Q Consensus 185 ~~~~~~v~~~~~~~~p~ 201 (207)
..+.+. +..+|.+|.
T Consensus 94 ~~~~l~--V~~~~~~P~ 108 (110)
T 2dm2_A 94 CTGRLM--VQAVNSGPS 108 (110)
T ss_dssp ECCCEE--EECCSCCSS
T ss_pred EEEEEE--EECCCCCCC
Confidence 665554 446666664
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-15 Score=97.72 Aligned_cols=164 Identities=9% Similarity=0.063 Sum_probs=105.6
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....|.+|+++.|+|.+....+. .+.|.-. +.... .........+.|.+++ +|++.|.|.+. -.+......
T Consensus 8 ~P~~~~V~~G~Sv~l~Cs~~c~~p~-~~~~~t~---l~~~~-~~~g~~~~~~~ls~vs-~d~~~~~C~~~-c~~~~~~~~ 80 (196)
T 3bn3_B 8 QPRVAFVERGGSLWLNCSTNCPRPE-RGGLETS---LRRNG-TQRGLRWLARQLVDIR-EPETQPVCFFR-CARRTLQAR 80 (196)
T ss_dssp ESSEEEEETTEEEEEEEEECCSSCS-EEEEECS---SEEEE-EEEETTEEEEEEEEEC-SSEECCEEEEE-ETTEEEEEE
T ss_pred cCCCcEEcCCCeEEEEEeCCCCCCC-ccEEEEc---cCCee-EccccCceEEEEEEEc-cCCCceEEEEE-CCCCceEEE
Confidence 3556678999999999999654333 6777431 11100 0000111238999998 88888999975 444555678
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccceeEE-eecCceEEEEEecCCCC
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVAQAHI-LRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~ 167 (207)
+.|.|+..|......+....+..|+.++|.|.+.+..+. .++.|++++..+......... ........+.+.....+
T Consensus 81 v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D 160 (196)
T 3bn3_B 81 GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARRED 160 (196)
T ss_dssp CEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGG
T ss_pred EEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeeeecc
Confidence 889999888765554443346799999999999987553 248999998775422100000 00012245666666666
Q ss_pred CCeEEEEEEecCCC
Q psy10918 168 DYGTLICWGSNKIG 181 (207)
Q Consensus 168 ~~g~y~C~~~n~~g 181 (207)
+...|+|.|.+..+
T Consensus 161 ~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 161 HGANFSCRAELDLR 174 (196)
T ss_dssp TTCEEEEEEEEECG
T ss_pred CCCeEEEEEEccCC
Confidence 66699999999876
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-16 Score=90.97 Aligned_cols=86 Identities=14% Similarity=0.282 Sum_probs=66.8
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.................|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 12 p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~ 90 (100)
T 2kdg_A 12 PENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90 (100)
T ss_dssp CCCEEEETTCCEEEEEECEEESCC-EEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEE
Confidence 344567899999999999998887 9999999877554332233333444567999999999999999999999998766
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
++.+.|.
T Consensus 91 ~~~l~V~ 97 (100)
T 2kdg_A 91 TVQLDVL 97 (100)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6666655
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=94.90 Aligned_cols=89 Identities=15% Similarity=0.279 Sum_probs=71.8
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+....+.+|+++.|.|.+.+.+.+ .+.|++++..+...........+++|.|.+++.+|+|.|+|.+.|..|.. ..
T Consensus 13 ~~p~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~ 90 (118)
T 2eo9_A 13 QGPVNQTVAVDGTFVLSCVATGSPVP-TILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEA-TW 90 (118)
T ss_dssp BCCCCEEEETTCEEEEECBCCCSSCC-EEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEE-EE
T ss_pred cCCCCEEEcCCCeEEEEEEEEecCCC-EEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcE-EE
Confidence 34566778999999999999998887 99999999888654444444567789999999999999999999988865 44
Q ss_pred eEEEEEEeCCc
Q psy10918 90 AFFLNVMYSPT 100 (207)
Q Consensus 90 ~~~l~v~~~~~ 100 (207)
.+.|.|...+.
T Consensus 91 ~~~l~V~~~~~ 101 (118)
T 2eo9_A 91 SAYIEVQEFGV 101 (118)
T ss_dssp ECCEEEECCSC
T ss_pred EEEEEEEeCCC
Confidence 56688876543
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=92.21 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=72.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec--CCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+... ...|.|.+++..|+|.|+|.+.|..|.
T Consensus 10 i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~ 88 (114)
T 2cqv_A 10 IIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS 88 (114)
T ss_dssp ESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred EEeCCCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCc
Confidence 3345667788999999999999998887 9999999988875432222211 356999999999999999999998886
Q ss_pred CccceEEEEEEeCCccc
Q psy10918 86 GESNAFFLNVMYSPTCK 102 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~ 102 (207)
. ...+.|.|...|..+
T Consensus 89 ~-~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 89 R-QAQVNLTVVDKPDPP 104 (114)
T ss_dssp E-ECCEEEEEECSCSCC
T ss_pred E-EEEEEEEEECCCCCC
Confidence 5 557788888766544
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-15 Score=99.98 Aligned_cols=168 Identities=14% Similarity=0.162 Sum_probs=98.1
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--cccc---c-------cccCCeEec----C--CeEEEEecCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTLH---H-------NIAQGIIMT----N--QSLVLQRVNR 69 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~~---~-------~~~~~~~~~----~--~~l~i~~~~~ 69 (207)
.+.+....+.+|++++|.|.+.+.+. ...+.||+.. ..+. . ....++... + .+|.|.+++.
T Consensus 5 ~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 84 (229)
T 1hxm_A 5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE 84 (229)
T ss_dssp EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred EeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCH
Confidence 34556677899999999999875431 2379999853 1111 0 001222221 1 3699999999
Q ss_pred CCCeeeEEEEeeeCC------C-CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCcee
Q psy10918 70 QSAGNYTCVGFNIEG------D-GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAE 141 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~------~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~ 141 (207)
+|+|.|+|.+.+..+ . .......|.|....... ..+... +.. ..+.|.|.+.+..+ ++.+.|+++ ..+
T Consensus 85 ~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~-~~P~v~-~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~ 160 (229)
T 1hxm_A 85 RDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPH-TKPSVF-VMK-NGTNVACLVKEFYPKDIRINLVSS-KKI 160 (229)
T ss_dssp GGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCC-BCCEEE-EEE-ETTEEEEEEESCBSSCCEEEEECS-SEE
T ss_pred hHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCC-cCCcEE-EcC-CCCeEEEEEEEEeCCCEEEEEecC-CEE
Confidence 999999999986521 1 11233467777421111 122221 122 24599999998644 459999998 654
Q ss_pred eeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 142 TVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
...........++..... ......+.|.|+|.|.|..+.
T Consensus 161 ~~~~~~~~~~~dg~y~~~--~~~~~~~~~~ytC~V~h~~~~ 199 (229)
T 1hxm_A 161 TEFDPAIVISPSGKYNAV--KLGKYEDSNSVTCSVQHDNKT 199 (229)
T ss_dssp EECCCEEEECTTSSEEEE--EEEEETTTTTCEEEEEETTEE
T ss_pred ecCccceEECCCCcEEEE--ECcccCCCCcEEEEEEeCCCC
Confidence 322221222223333222 222336889999999997653
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.1e-16 Score=93.50 Aligned_cols=92 Identities=27% Similarity=0.455 Sum_probs=71.8
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE-ecCC---eEEEEecCCCCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-MTNQ---SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~---~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.|...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+......... ..+. +|.|.+++..|+|.|.|.+.|.
T Consensus 17 ~f~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 95 (116)
T 2kkq_A 17 MFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNE 95 (116)
T ss_dssp CBSSCCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEET
T ss_pred eEEeCCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcC
Confidence 34455677889999999999999998887 99999999887653222222 2222 7999999999999999999998
Q ss_pred CCCCccceEEEEEEeCCc
Q psy10918 83 EGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~ 100 (207)
.|.. ...+.|.|..+|.
T Consensus 96 ~G~~-~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 96 AGVT-TCNTRLDVTARPN 112 (116)
T ss_dssp TEEE-EEEEEEEEECCSC
T ss_pred CCeE-EEEEEEEEeCCCC
Confidence 8865 5577788887664
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-16 Score=90.84 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=66.4
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+..|+.+.|.|.+.+.|.+ .+.|++++..+............+....|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 15 ~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~ 93 (99)
T 1u2h_A 15 QSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEAR 93 (99)
T ss_dssp EEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEecCCCEEEEEEEEEEcCCC-EEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEE
Confidence 457899999999999999987 9999999887654433444445555667999999999999999999999998766655
Q ss_pred EEEe
Q psy10918 189 FHIV 192 (207)
Q Consensus 189 ~~v~ 192 (207)
+.|.
T Consensus 94 l~V~ 97 (99)
T 1u2h_A 94 LEVR 97 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-15 Score=105.94 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=103.2
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCC-------------CCcEEEEEEC--Cc--cc--cccc--------c-C-C-
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVP-------------PVYKVEWRHN--NK--TL--HHNI--------A-Q-G- 54 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~-------------~~~~i~W~~~--~~--~~--~~~~--------~-~-~- 54 (207)
.+..........+..|++++|.|.....+ ....+.||+. +. .+ ..+. . . .
T Consensus 158 ~f~V~tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~ 237 (401)
T 3f8u_B 158 VLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVA 237 (401)
T ss_dssp EEEEEESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEE
T ss_pred EEEEeCCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEE
Confidence 34444455677888999999999975432 1237999973 21 01 1110 0 0 0
Q ss_pred e-----------EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCC-cEEEEEE
Q psy10918 55 I-----------IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQE-KVNISCE 122 (207)
Q Consensus 55 ~-----------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~ 122 (207)
+ ...+.+|+|.+++..|+|.|.|.+.+..+.. ...+.|.|..+|.+............|+ .+.|.|.
T Consensus 238 f~~~~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~ 316 (401)
T 3f8u_B 238 FAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCL 316 (401)
T ss_dssp EEEESCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEE
T ss_pred EEeecccccccccCCcEEEEECcCCHhhCceEEEEEEecccce-eEEEEEeeccCCeEeeccCcceeecCCCccEEEEEE
Confidence 1 1124579999999999999999998765433 4466788887776543221111123565 7999999
Q ss_pred eccCCCC--ceEEEE-EcCc---eeeecc----ceeEEeecCce---EEEEEecCCC-CCCeEEEEEEecCC
Q psy10918 123 VDANPPD--VKFSWT-FNNS---AETVNV----AQAHILRSGTL---SVVAYSPNSE-LDYGTLICWGSNKI 180 (207)
Q Consensus 123 ~~~~~~~--~~~~W~-~~~~---~~~~~~----~~~~~~~~~~~---~~l~i~~~~~-~~~g~y~C~~~n~~ 180 (207)
+.+.++. +.+.|+ +++. ...... .......++.. +.|.+...+. .+.+.|+|.+.|..
T Consensus 317 a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 317 VSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp EEEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred ecCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 9997443 599995 7652 111111 11112223332 2344433322 24569999999976
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=89.97 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=65.4
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+............+....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 14 ~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 92 (99)
T 1g1c_A 14 SQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHA 92 (99)
T ss_dssp CEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred ceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEE
Confidence 3457899999999999999887 999999988755333222233345566799999999999999999999999876665
Q ss_pred EEEEe
Q psy10918 188 VFHIV 192 (207)
Q Consensus 188 ~~~v~ 192 (207)
.+.|.
T Consensus 93 ~l~V~ 97 (99)
T 1g1c_A 93 FLLVQ 97 (99)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55543
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=93.28 Aligned_cols=88 Identities=20% Similarity=0.381 Sum_probs=62.4
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...........+.+|.|.+++..|+|.|+|.+.|..|.. ...
T Consensus 16 ~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~ 93 (108)
T 3kvq_A 16 NLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVE 93 (108)
T ss_dssp CCCCEEEETTCCEEEECBCC----C-CEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CE-EEE
T ss_pred CCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCce-EEE
Confidence 4556778899999999999988887 89999999888754433333445789999999999999999999988876 446
Q ss_pred EEEEEEeCCc
Q psy10918 91 FFLNVMYSPT 100 (207)
Q Consensus 91 ~~l~v~~~~~ 100 (207)
+.|.|..++.
T Consensus 94 ~~l~V~~~~~ 103 (108)
T 3kvq_A 94 AFFIIEGAQE 103 (108)
T ss_dssp EEEEEEC---
T ss_pred EEEEEeCCCc
Confidence 7788886654
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=91.88 Aligned_cols=89 Identities=13% Similarity=0.300 Sum_probs=68.9
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.|...+.+..+.+|+++.|.|.+ .|.+ .+.|+|+|..+.......+...+ ..|.|.+++.+|+|.|.|.+.|.
T Consensus 8 ~~~~~~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~- 83 (100)
T 2yuz_A 8 LKILTPLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY- 83 (100)
T ss_dssp CCCSBCCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-
T ss_pred CEEeccCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-
Confidence 345566778889999999999999 6666 89999999998765443333333 26999999999999999999986
Q ss_pred CCCccceEEEEEEeCCc
Q psy10918 84 GDGESNAFFLNVMYSPT 100 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~ 100 (207)
..+....|.|..+|.
T Consensus 84 --~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 84 --NVTLPAKVHVISGPS 98 (100)
T ss_dssp --CCCEEEEEEEECCSC
T ss_pred --CeeEEEEEEEeCCCC
Confidence 234567788887653
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=91.13 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=66.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.|.| .+.|++++..+. .....+........|.|.++..+|+|.|+|.|.|..|..+..
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 108 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLD--TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTAT 108 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECC--CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCE
T ss_pred CCEEEECCCEEEEEEEEccCCCC-EEEEEECCEECC--CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEE
Confidence 44567799999999999999987 999999988764 233444455556779999999999999999999999977665
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 109 ~~l~V~ 114 (118)
T 2e7c_A 109 IRIRVV 114 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554443
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=93.86 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=69.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.................|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus 17 ~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 95 (110)
T 2dm3_A 17 GDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS 95 (110)
T ss_dssp CEEEEESSSCBCCEEEEECSSCC-EEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEEC
T ss_pred CcEEEeCCCEEEEEEEEEEcCCC-EEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEE
Confidence 34567899999999999999887 99999998775443332233333445679999999999999999999999987666
Q ss_pred eEEEEeecccCCCCC
Q psy10918 187 CVFHIVSAVTFHPPF 201 (207)
Q Consensus 187 ~~~~v~~~~~~~~p~ 201 (207)
+.+ .+..+|.+|.
T Consensus 96 ~~l--~V~~~p~~P~ 108 (110)
T 2dm3_A 96 LEL--VVAAKESGPS 108 (110)
T ss_dssp CEE--EEECCCCSSS
T ss_pred EEE--EEeCCCCCCC
Confidence 554 4556666665
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=87.99 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=64.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+...........++ .|.|.++..+|+|.|+|.|.|..|.....
T Consensus 16 ~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 91 (100)
T 2edj_A 16 ANQTLAVDGTALLKCKATGDPLP-VISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWS 91 (100)
T ss_dssp CCEEEESSSEEEECCEEECSSCC-EEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEEEECSSCCCBCC
T ss_pred CCEEEcCCCcEEEEEEEEEcCCC-EEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEEEEcCCCCEEEE
Confidence 33456799999999999999987 899999987754322223332222 48999999999999999999999988777
Q ss_pred eEEEEee
Q psy10918 187 CVFHIVS 193 (207)
Q Consensus 187 ~~~~v~~ 193 (207)
+.+.|..
T Consensus 92 ~~l~V~~ 98 (100)
T 2edj_A 92 AVLDVTE 98 (100)
T ss_dssp EEEEEES
T ss_pred EEEEEec
Confidence 6666553
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=89.95 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=68.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe-cCC--eEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TNQ--SLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~--~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... .++ .|.|.+++..|+|.|+|.+.|..|
T Consensus 8 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 86 (100)
T 2kdg_A 8 FIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG 86 (100)
T ss_dssp CCCCCCCEEEETTCCEEEEEECEEESCC-EEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred EEeCCCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence 3344567788999999999999988887 999999998887654333332 233 799999999999999999999887
Q ss_pred CCccceEEEEEEe
Q psy10918 85 DGESNAFFLNVMY 97 (207)
Q Consensus 85 ~~~~~~~~l~v~~ 97 (207)
.. ...+.|.|..
T Consensus 87 ~~-~~~~~l~V~~ 98 (100)
T 2kdg_A 87 EA-TFTVQLDVLA 98 (100)
T ss_dssp EE-EEEEEEEEEC
T ss_pred eE-EEEEEEEEEe
Confidence 65 5566777764
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-16 Score=92.18 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=63.5
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.+....+.+|+.+.|.|.+.+.|.+ .+.|++++ ..+..............|.|.+++..|+|.|.|.+.|..|.. .
T Consensus 8 ~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~ 85 (93)
T 1wit_A 8 ASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED-E 85 (93)
T ss_dssp CCCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEE-E
T ss_pred CCCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeE-E
Confidence 3566778899999999999999988 99999999 776543211111223569999999999999999999988854 4
Q ss_pred ceEEEEE
Q psy10918 89 NAFFLNV 95 (207)
Q Consensus 89 ~~~~l~v 95 (207)
..+.|.|
T Consensus 86 ~~~~l~V 92 (93)
T 1wit_A 86 AIFEVIV 92 (93)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4555554
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=88.07 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=67.7
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... ...|.|.+++..|+|.|.|.+.|..|.
T Consensus 4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 75 (91)
T 3bfo_A 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDS 75 (91)
T ss_dssp CEEEECCCCEEECTTSCEEEECEEECSSCC-EEEEEETTEECTTCC-------SSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred eEEEECCCccEecCCCcEEEEEEeccCCCC-EEEEEcCCeeCCcCC-------CCeEEECCCCHHhCEEEEEEEEcCCCC
Confidence 345556677788999999999999999888 999999998776532 368999999999999999999998886
Q ss_pred CccceEEEEEE
Q psy10918 86 GESNAFFLNVM 96 (207)
Q Consensus 86 ~~~~~~~l~v~ 96 (207)
..+..+.|.|.
T Consensus 76 ~~s~~~~l~V~ 86 (91)
T 3bfo_A 76 QDSKKVEIIID 86 (91)
T ss_dssp EECCCEEEEEC
T ss_pred EEeeeEEEEEe
Confidence 55556666664
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=87.93 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=66.3
Q ss_pred eecCCCcccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+....+.+|+++.|.|.+.+. |.+ .+.|++++..+.......+...++ .|.|.+++..|+|.|.|.+.|..|..
T Consensus 6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 84 (97)
T 2bk8_A 6 GQIMHAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED 84 (97)
T ss_dssp CCCCCEEECTTCCEEEEEEEESCCTTC-EEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred ccCcCEEEcCCCcEEEEEEEeccCCCC-EEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence 44667788999999999999997 766 999999998887644333333444 79999999999999999999988765
Q ss_pred ccceEEEEEE
Q psy10918 87 ESNAFFLNVM 96 (207)
Q Consensus 87 ~~~~~~l~v~ 96 (207)
...+.|.|.
T Consensus 85 -~~~~~l~V~ 93 (97)
T 2bk8_A 85 -SSYAELFVK 93 (97)
T ss_dssp -EEEEEEEET
T ss_pred -eEEEEEEEE
Confidence 335555554
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=88.69 Aligned_cols=88 Identities=24% Similarity=0.299 Sum_probs=67.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC-C--eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-Q--SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~--~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+............ . +|.|.+++..|+|.|+|.+.|..
T Consensus 7 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 85 (99)
T 1u2h_A 7 TFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEY 85 (99)
T ss_dssp EEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEcCCceEecCCCEEEEEEEEEEcCCC-EEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECC
Confidence 44455667788999999999999998887 99999999888654332222222 2 69999999999999999999988
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
|.. ...+.|.|.
T Consensus 86 g~~-~~~~~l~V~ 97 (99)
T 1u2h_A 86 GAR-QCEARLEVR 97 (99)
T ss_dssp EEE-EEEEEEEEE
T ss_pred Cce-eEEEEEEEE
Confidence 765 445566664
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=104.00 Aligned_cols=165 Identities=22% Similarity=0.262 Sum_probs=96.1
Q ss_pred CCcccCCCcEEEEeEecc--CCCCcEEEEEECC--cccc------c---------cccCCeEec------CCeEEEEecC
Q psy10918 14 PDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNN--KTLH------H---------NIAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~--~~~~------~---------~~~~~~~~~------~~~l~i~~~~ 68 (207)
...+.+|++++|.|...+ .... .+.||+.. .... . ....++... ..+|+|.+++
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~~~-~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFSNH-DVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT 110 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGGTS-EEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred CEEEeCCCcEEEEEEeeCCccCCC-EEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence 456789999999999864 2233 89999842 1110 0 001122211 1249999999
Q ss_pred CCCCeeeEEEEee------eCC--------------C----CccceEEEEEEe----CCcccCCCCceeeeeeCCcEEEE
Q psy10918 69 RQSAGNYTCVGFN------IEG--------------D----GESNAFFLNVMY----SPTCKPHQQRVLGVARQEKVNIS 120 (207)
Q Consensus 69 ~~d~g~Y~C~~~~------~~~--------------~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~ 120 (207)
.+|+|.|+|.+.+ ..+ . .......|.|.. +|.+....+. .....|..+.|.
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~~~l~ 189 (267)
T 3u1s_H 111 ADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPS-SKSTSGGTAALG 189 (267)
T ss_dssp GGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-GGGEETTEEEEE
T ss_pred hhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCC-cccCCCCcEEEE
Confidence 9999999999862 000 0 012234566652 1222111111 123578899999
Q ss_pred EEeccC-CCCceEEEEEcCceeeeccce--eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 121 CEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 121 C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
|.+.+. |.++.+.| ++..+...... .....++. .+.|.+......| +.|+|.+.+..+..
T Consensus 190 C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 255 (267)
T 3u1s_H 190 CLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 255 (267)
T ss_dssp EEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred EEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCc
Confidence 999875 43568999 55443211111 11112222 2457888888778 99999999977544
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=88.57 Aligned_cols=89 Identities=19% Similarity=0.307 Sum_probs=69.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+............ .+|.|.+++.+|+|.|.|.+.|..|
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 88 (103)
T 3qp3_A 10 RITLRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKG 88 (103)
T ss_dssp EEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred EEEeCCcceEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence 44455677788999999999999998888 99999999888764433232222 3699999999999999999999887
Q ss_pred CCccceEEEEEEe
Q psy10918 85 DGESNAFFLNVMY 97 (207)
Q Consensus 85 ~~~~~~~~l~v~~ 97 (207)
.. ...+.|.|..
T Consensus 89 ~~-~~~~~l~V~~ 100 (103)
T 3qp3_A 89 EA-SDYATLDVTG 100 (103)
T ss_dssp EE-EEEEEEEEEC
T ss_pred cE-EEEEEEEEEC
Confidence 66 4466677663
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=86.79 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=59.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
+....+.+|+++.|.|.+.+ |.+ .+.|+|||.++.......+...+ .+|.|.+++.+|+|.|.|.+.| . +.
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~-~~ 75 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGG-PVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----D-SR 75 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CST-TCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----T-CE
T ss_pred CeEEEEecCCCEEEEEEECC-CCc-EEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----E-EE
Confidence 34567889999999999865 666 89999999999875444443333 3699999999999999998854 2 44
Q ss_pred eEEEEEEe
Q psy10918 90 AFFLNVMY 97 (207)
Q Consensus 90 ~~~l~v~~ 97 (207)
.+.|.|..
T Consensus 76 ~a~l~V~e 83 (84)
T 2lu7_A 76 IFLVSVEE 83 (84)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEC
Confidence 56677653
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=88.67 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=68.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe-cC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... .+ .+|.|.+++.+|+|.|+|.+.|..
T Consensus 7 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 85 (99)
T 1g1c_A 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIA 85 (99)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred ceEecCcceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECC
Confidence 34455677888999999999999998887 999999999887643322211 22 369999999999999999999988
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
|.. ...+.|.|.
T Consensus 86 g~~-~~~~~l~V~ 97 (99)
T 1g1c_A 86 GET-SSHAFLLVQ 97 (99)
T ss_dssp EEE-EEEEEEEEE
T ss_pred CcE-EEEEEEEEe
Confidence 765 335666665
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=86.79 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=64.7
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.+...+.+..+.+|+++.|.|.+.+. .+ .+.|+|+|.++.......+...+ .+|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~~~~~~~~~~~v~~G~~v~l~C~v~~~-~~-~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T 1waa_A 6 IEVEKPLYGVEVFVGETAHFEIELSEP-DV-HGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK 83 (93)
T ss_dssp CCEEECCCCEEEETTSCEEEEEEESSS-SC-CCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred cEeeccCcceEEeCCCCEEEEEEECCC-CC-eEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCc
Confidence 355667788899999999999999764 35 89999999998765443333333 369999999999999999998642
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
.+..|.|.
T Consensus 84 -----~sa~L~V~ 91 (93)
T 1waa_A 84 -----SAANLKVK 91 (93)
T ss_dssp -----EEEEEEEE
T ss_pred -----EEEEEEEE
Confidence 34556665
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-15 Score=87.09 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=61.3
Q ss_pred eeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeecC---ceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRSG---TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
..++.+.|.|.+.|.|.| .+.|+++|..+...... ..+...+ ....|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 14 ~~~~~~~~~c~v~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~- 91 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ- 91 (103)
T ss_dssp CCCCEEEEEEEEECSSCC-EEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE-
T ss_pred eECcEEEEEEEEEEeCCC-EEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE-
Confidence 356789999999999998 99999999876533211 1111111 23459999999999999999999999987655
Q ss_pred EEEEeecccCC
Q psy10918 188 VFHIVSAVTFH 198 (207)
Q Consensus 188 ~~~v~~~~~~~ 198 (207)
+.+.+.++|.
T Consensus 92 -~~l~V~~~P~ 101 (103)
T 1wwb_X 92 -ISAHFMGWPG 101 (103)
T ss_dssp -EEECCSCCCC
T ss_pred -EEEEECCCCC
Confidence 4455555554
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=85.48 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=63.0
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+....+.+|+.+.|.|.+ .|.+ .+.|+++|..+.. ..+..+..++....|.|.++..+|+|.|+|.|.|. ..+
T Consensus 13 ~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~~-~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~ 86 (100)
T 2yuz_A 13 PLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQE-SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVT 86 (100)
T ss_dssp CCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEECCC-CSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCC
T ss_pred cCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEECCC-CCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--Cee
Confidence 3445567899999999999 6666 9999999987643 23445666677778999999999999999999997 344
Q ss_pred cceEEEEe
Q psy10918 185 VPCVFHIV 192 (207)
Q Consensus 185 ~~~~~~v~ 192 (207)
.++.|.|.
T Consensus 87 ~~a~L~V~ 94 (100)
T 2yuz_A 87 LPAKVHVI 94 (100)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 45555554
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=90.09 Aligned_cols=84 Identities=11% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ....+...+ ..|.|.+++..|+|.|+|.+.|..|.. ...
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~ 108 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD-TAT 108 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECCC-SSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEE-CCE
T ss_pred CCEEEECCCEEEEEEEEccCCCC-EEEEEECCEECCC-CcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeE-EEE
Confidence 45678889999999999999988 9999999988863 222222233 349999999999999999999998855 557
Q ss_pred EEEEEEeCC
Q psy10918 91 FFLNVMYSP 99 (207)
Q Consensus 91 ~~l~v~~~~ 99 (207)
+.|.|..+|
T Consensus 109 ~~l~V~~~P 117 (118)
T 2e7c_A 109 IRIRVVEKA 117 (118)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 778887654
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=89.49 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=58.9
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
+.+.+..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... ..... .....|.|.++..+|+|
T Consensus 3 ~~v~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G 77 (108)
T 3kvq_A 3 LTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDS-GIVLK--DGNRNLTIRRVRKEDEG 77 (108)
T ss_dssp --------CCCBS-CCCCEEEETTCCEEEECBCC----C-CEEEEESSSBCCCBT-TEEEE--TTTTEEEECSCCGGGCE
T ss_pred eeECccCCCceec-CCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeEcccCC-CeEEe--CCCcEEEEeecCcccCE
Confidence 3455566666553 3344567899999999999998887 999999987654322 12222 22346999999999999
Q ss_pred EEEEEEecCCCCCccceEEEEeecccCCCC
Q psy10918 171 TLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 171 ~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p 200 (207)
.|+|.|.|..|.....+.+ .+.++|..|
T Consensus 78 ~Y~C~a~n~~g~~~~~~~l--~V~~~~~~~ 105 (108)
T 3kvq_A 78 LYTCQACSVLGCAKVEAFF--IIEGAQEKT 105 (108)
T ss_dssp EEEEEEC----CEEEEEEE--EEEC-----
T ss_pred EEEEEEEeCCCceEEEEEE--EEeCCCccc
Confidence 9999999999987666444 444555443
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=89.70 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+....+..|+.+.|.|.+.+.|.+ .+.|++++..+...........++ .|.|.++..+|+|.|+|.|.|..|...
T Consensus 14 ~p~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 89 (118)
T 2eo9_A 14 GPVNQTVAVDGTFVLSCVATGSPVP-TILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIASTPSGEAT 89 (118)
T ss_dssp CCCCEEEETTCEEEEECBCCCSSCC-EEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEECSSCEEE
T ss_pred CCCCEEEcCCCeEEEEEEEEecCCC-EEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEEcCCCcEE
Confidence 3444567899999999999998887 999999987764333333333333 599999999999999999999999877
Q ss_pred cceEEEEeecc
Q psy10918 185 VPCVFHIVSAV 195 (207)
Q Consensus 185 ~~~~~~v~~~~ 195 (207)
..+.+.|....
T Consensus 90 ~~~~l~V~~~~ 100 (118)
T 2eo9_A 90 WSAYIEVQEFG 100 (118)
T ss_dssp EECCEEEECCS
T ss_pred EEEEEEEEeCC
Confidence 67666666543
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-15 Score=87.08 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=68.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...........+. +|.|.+++.+|+|.|.|.+.|..|
T Consensus 8 ~i~~~~~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 86 (99)
T 3puc_A 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAG 86 (99)
T ss_dssp EEEECCCCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred EEEecCccEEEeCCCcEEEEEEEEecCCC-EEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCC
Confidence 44455677788999999999999988887 999999998887543333333333 699999999999999999998877
Q ss_pred CCccceEEEEEE
Q psy10918 85 DGESNAFFLNVM 96 (207)
Q Consensus 85 ~~~~~~~~l~v~ 96 (207)
.. ...+.|.|.
T Consensus 87 ~~-~~~~~l~V~ 97 (99)
T 3puc_A 87 SV-SSSCKLTIK 97 (99)
T ss_dssp EE-EEEEEEEEE
T ss_pred cE-eEEEEEEEE
Confidence 65 445566654
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=86.88 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=62.8
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+....+..|+.+.|.|.+.|.|.| .+.|++++ ..+... ...........|.|.++..+|+|.|+|.|.|..|..
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 84 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPE---LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED 84 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCSTT---SEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEE
T ss_pred CCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCCc---EEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeE
Confidence 344567899999999999999998 99999998 554221 222233455679999999999999999999999977
Q ss_pred ccceEEEE
Q psy10918 184 RVPCVFHI 191 (207)
Q Consensus 184 ~~~~~~~v 191 (207)
+.++.+.|
T Consensus 85 ~~~~~l~V 92 (93)
T 1wit_A 85 EAIFEVIV 92 (93)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55544443
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=87.48 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=66.4
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ....+...+....|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus 17 ~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 94 (103)
T 3qp3_A 17 SHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQES-SKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA 94 (103)
T ss_dssp CEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCC-SSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred ceEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCCC-CCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEE
Confidence 3457799999999999999987 99999998775432 234455555667899999999999999999999999886665
Q ss_pred EEEEe
Q psy10918 188 VFHIV 192 (207)
Q Consensus 188 ~~~v~ 192 (207)
.+.|.
T Consensus 95 ~l~V~ 99 (103)
T 3qp3_A 95 TLDVT 99 (103)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=89.73 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=68.5
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.+...+.+..+.+|++++|.|.+.+.+.+..+.|++++..+.......+...+ .+|.|.+++.+|+|.|+|.+.+.
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~- 87 (104)
T 2eny_A 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL- 87 (104)
T ss_dssp CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTE-
T ss_pred CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCe-
Confidence 345556778889999999999999887643379999999988765444333333 36999999999999999988643
Q ss_pred CCCccceEEEEEEeCCc
Q psy10918 84 GDGESNAFFLNVMYSPT 100 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~ 100 (207)
.....|.|..+|.
T Consensus 88 ----~~~a~L~V~~~p~ 100 (104)
T 2eny_A 88 ----TSKASLIVRERSG 100 (104)
T ss_dssp ----EEEECEEEECCCS
T ss_pred ----eEEEEEEEeCCCc
Confidence 3466788887664
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-15 Score=88.64 Aligned_cols=87 Identities=20% Similarity=0.333 Sum_probs=66.3
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
..+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .........|.|.+++.+|+|.|.|.+.|..|.
T Consensus 12 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 89 (99)
T 2yr3_A 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYAR-STCEAGVAELHIQDALPEDHGTYTCLAENALGQ 89 (99)
T ss_dssp EEEEECCCCEEECTTCCEEEECEEEEESCC-CCEEEESSSBCSSCC-CEEETTEEEEEECSCCTTCCBCEEEEEECSSCE
T ss_pred CceeecCCCCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEECcccc-eEeeCCeEEEEECCCChhhCEEEEEEEEECCCe
Confidence 344455677788999999999999998887 899999998876432 122222357999999999999999999998876
Q ss_pred CccceEEEEE
Q psy10918 86 GESNAFFLNV 95 (207)
Q Consensus 86 ~~~~~~~l~v 95 (207)
. ...+.|.|
T Consensus 90 ~-~~~~~l~V 98 (99)
T 2yr3_A 90 V-SCSAWVTV 98 (99)
T ss_dssp E-EEECCEEE
T ss_pred E-EEEEEEEE
Confidence 4 33444544
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=91.89 Aligned_cols=91 Identities=23% Similarity=0.446 Sum_probs=71.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-C--CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-N--QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+...+....+.+|+++.|.|.+.+.+.+ .+.|++++..+........... + .+|.|.+++.+|+|.|+|.+.|..|
T Consensus 12 i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 90 (110)
T 2dm3_A 12 FLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90 (110)
T ss_dssp EEECCCEEEEESSSCBCCEEEEECSSCC-EEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSC
T ss_pred EEeCCCcEEEeCCCEEEEEEEEEEcCCC-EEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCC
Confidence 3445667788999999999999998887 9999999988765433222222 2 3799999999999999999999888
Q ss_pred CCccceEEEEEEeCCc
Q psy10918 85 DGESNAFFLNVMYSPT 100 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~ 100 (207)
.. ...+.|.|..+|.
T Consensus 91 ~~-~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 91 QN-SFSLELVVAAKES 105 (110)
T ss_dssp EE-EECCEEEEECCCC
T ss_pred EE-EEEEEEEEeCCCC
Confidence 65 5567788886654
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=88.94 Aligned_cols=89 Identities=25% Similarity=0.260 Sum_probs=68.8
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE-ec-CC--eEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-MT-NQ--SLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~-~~--~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|++++..+......... .. ++ .|.|.+++..|+|.|+|.+.|..|.
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 91 (110)
T 2dm2_A 13 MKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGR 91 (110)
T ss_dssp SCCCCEEEETTCCEEEEEEBCCSSCC-EEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCC
T ss_pred ecCcCeEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCe
Confidence 34566778999999999999998887 99999999888753222222 11 22 6999999999999999999998887
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
. ...+.|.|...+.
T Consensus 92 ~-~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 92 I-SCTGRLMVQAVNS 105 (110)
T ss_dssp E-EECCCEEEECCSC
T ss_pred E-EEEEEEEEECCCC
Confidence 6 4566788876554
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=88.48 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=59.5
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEee---c--CceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILR---S--GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~---~--~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
.+..+.|.|.+.|.|.| .|.|++||..+...... ..+.. . .....|.|.++...|+|.|+|.|.|..|....+
T Consensus 14 ~~~~~~l~c~v~G~P~P-~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t 92 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 92 (126)
T ss_dssp CCCEEEEEEEECCSSCC-EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cCccEEEEEEEeeeCCC-eEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence 56789999999999998 99999999876533221 11211 1 123569999999999999999999999988666
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|+
T Consensus 93 ~~l~v~ 98 (126)
T 1he7_A 93 IMAAFM 98 (126)
T ss_dssp EEECCC
T ss_pred EEEEEE
Confidence 555444
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-14 Score=84.34 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=64.1
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+....+.+|+.+.|.|.+.+ +.+ .+.|++++..+..... ...+..++....|.|.++..+|+|.|+|.|.| .
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~ 86 (103)
T 1x44_A 13 QLEDTTAYCGERVELECEVSE-DDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----G 86 (103)
T ss_dssp CCCCEEEETTEEEEEEEECSS-SSC-CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----E
T ss_pred cCCCEEEECCCCEEEEEEecC-CCC-eEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----C
Confidence 344456789999999999977 555 9999999887543322 33555666667899999999999999999998 2
Q ss_pred ccceEEEEeecccCCCC
Q psy10918 184 RVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 184 ~~~~~~~v~~~~~~~~p 200 (207)
+.++ .+.+..+|.|+
T Consensus 87 ~~~~--~l~V~~~p~p~ 101 (103)
T 1x44_A 87 QSSA--KLSVDLKSGPS 101 (103)
T ss_dssp EEEE--EEEEECCCSCC
T ss_pred cEEE--EEEEeCCCCCC
Confidence 3343 44444555554
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-16 Score=97.74 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=72.3
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec-cceeEE--eecCc--eEEEEEecC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN-VAQAHI--LRSGT--LSVVAYSPN 164 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~--~~~~~--~~~l~i~~~ 164 (207)
.+.|.|..+|.+.. +....+.+|+.+.|.|.+.+.|.|..+.|++++..+... ..+..+ ..... .+.|.|.++
T Consensus 6 ~~~l~V~~~P~i~~--~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v 83 (122)
T 2cry_A 6 SGTLTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83 (122)
T ss_dssp CCCCCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred EEEEEEecCCCccC--CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence 45567777776554 344456789999999999999987449999998775432 122222 11122 567999999
Q ss_pred CCCCC-eEEEEEEecCCCCCccceEEEEe
Q psy10918 165 SELDY-GTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 165 ~~~~~-g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
..+|. |.|+|.|.|..|.....+.|.|.
T Consensus 84 ~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~ 112 (122)
T 2cry_A 84 VRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112 (122)
T ss_dssp CHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred ChhhCCceEEEEEECCCCeEEEEEEEEEC
Confidence 99999 99999999999987655444444
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=85.40 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=65.9
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+... ....+..++....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 15 ~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 92 (99)
T 3puc_A 15 DTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAITQG-GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92 (99)
T ss_dssp CEEEESSSCEEEEEEEEEESCC-EEEEEETTEECCSS-SSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cEEEeCCCcEEEEEEEEecCCC-EEEEEECCEECcCC-CCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence 3457789999999999998887 99999988765432 334455555666799999999999999999999999876665
Q ss_pred EEEEe
Q psy10918 188 VFHIV 192 (207)
Q Consensus 188 ~~~v~ 192 (207)
.+.|.
T Consensus 93 ~l~V~ 97 (99)
T 3puc_A 93 KLTIK 97 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=90.56 Aligned_cols=88 Identities=22% Similarity=0.359 Sum_probs=68.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec--CCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+........... +.+|.|.+++..|+|.|+|.+.|..|
T Consensus 16 ~i~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 94 (106)
T 1nct_A 16 RILTKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG 94 (106)
T ss_dssp EEEECCCCEEESSSSCEECCEEEECSSCC-BCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred EEEECCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCC
Confidence 34456677889999999999999998887 9999999988765433222222 35799999999999999999999888
Q ss_pred CCccceEEEEEE
Q psy10918 85 DGESNAFFLNVM 96 (207)
Q Consensus 85 ~~~~~~~~l~v~ 96 (207)
.. ...+.|.|+
T Consensus 95 ~~-~~~~~l~V~ 105 (106)
T 1nct_A 95 KQ-EAEFTLTIQ 105 (106)
T ss_dssp BC-CEEEEEEEC
T ss_pred eE-EEEEEEEEE
Confidence 75 456666653
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-15 Score=85.97 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=64.3
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+....+.+|+++.|.|.+.+.+ + .+.|++++..+.... ++...+..|.|.+++..|+|.|.|.+.|..|.. ..
T Consensus 14 ~~~~~~~v~~G~~v~l~C~~~g~p-p-~i~W~k~g~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~ 88 (95)
T 2ckn_A 14 VEVESLLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLVESN--RTRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TT 88 (95)
T ss_dssp TBBCCEEECTTSCEEEECCEESSC-C-EEEEEBTTBCCCCCS--SEEECSSEEEESSCCGGGSEEEEEEEEETTEEE-EE
T ss_pred cCcceEEEcCCCeEEEEEECCCCC-C-ceEEEECCEecCCCC--CEEEeCCEEEECCCChHHCEEEEEEeccCCCcE-EE
Confidence 345667788999999999999886 6 999999998887533 344557889999999999999999999887754 43
Q ss_pred eEEEEE
Q psy10918 90 AFFLNV 95 (207)
Q Consensus 90 ~~~l~v 95 (207)
.+.|.|
T Consensus 89 ~~~l~V 94 (95)
T 2ckn_A 89 YFSVNV 94 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444544
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-14 Score=85.64 Aligned_cols=88 Identities=10% Similarity=0.048 Sum_probs=62.2
Q ss_pred CCceeeeeeCCcEEEEEEeccC---CCCceEEEEEcCcee-eec-cceeEEe----ecC--ceEEEEEecCCCCCCeEEE
Q psy10918 105 QQRVLGVARQEKVNISCEVDAN---PPDVKFSWTFNNSAE-TVN-VAQAHIL----RSG--TLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~~~~~-~~~-~~~~~~~----~~~--~~~~l~i~~~~~~~~g~y~ 173 (207)
.+....+.+|+.+.|.|.+.+. |.| .|.|+|+.... ... .....+. ... ....|.|.++...|+|.|+
T Consensus 13 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~ 91 (126)
T 2dav_A 13 KPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR 91 (126)
T ss_dssp CCCCCEEETTCCEEEEEEEECCCSSSCC-EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred cCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEE
Confidence 4455668899999999999875 666 99999964110 000 0111111 111 1467999999999999999
Q ss_pred EEEecCCCCCccceEEEEee
Q psy10918 174 CWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 174 C~~~n~~g~~~~~~~~~v~~ 193 (207)
|.|.|..|..+..+.|.|.+
T Consensus 92 Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 92 CEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEECSSCEEEECCEEEEEC
T ss_pred EEEEeCCCcEEEEEEEEEEe
Confidence 99999998887777777665
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-15 Score=86.54 Aligned_cols=84 Identities=20% Similarity=0.414 Sum_probs=65.5
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.+...+....+.+|++++|.|.+.+.+.+ .+.|++++..+... .+..|.|.+++..|+|.|.|.+.|..+
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 81 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLPLP-------PSPVLILPEIGPQDQGTYSCVATHSSH 81 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSC-CCCCEESSSBCSSC-------CCSEEEEESCCTTTCEEEECEECCSSC
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCC-EEEEEECCEECcCC-------CCCEEEECCCCcccCEEEEEEEEeCCC
Confidence 3445556677788999999999999998877 99999999877642 256899999999999999999998654
Q ss_pred C-CccceEEEEEE
Q psy10918 85 D-GESNAFFLNVM 96 (207)
Q Consensus 85 ~-~~~~~~~l~v~ 96 (207)
. ..+..+.|.|.
T Consensus 82 ~~~~s~~~~v~V~ 94 (96)
T 2ens_A 82 GPQESRAVSISII 94 (96)
T ss_dssp CCEECCCEEEEEC
T ss_pred CcEEEEEEEEEEe
Confidence 3 33445555553
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=92.24 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=71.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec---CCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+... ...|.|.+++..|+|.|+|.+.|..
T Consensus 43 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 121 (154)
T 1fhg_A 43 YFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121 (154)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred eEEccCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECC
Confidence 44455667788999999999999998888 9999999988875433222221 2379999999999999999999988
Q ss_pred CCCccceEEEEEEeCCccc
Q psy10918 84 GDGESNAFFLNVMYSPTCK 102 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~ 102 (207)
|.. ...+.|.|..+|...
T Consensus 122 G~~-~~~~~l~V~~~p~~~ 139 (154)
T 1fhg_A 122 GEA-TCTAELLVETMGKEG 139 (154)
T ss_dssp EEE-EEEEEEEEECC----
T ss_pred CeE-EEEEEEEEeCcCcCC
Confidence 875 556778888766543
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=88.58 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=65.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccC---CCCcEEEEEECCccc-cccccCCeEe----------cCCeEEEEecCCCCCe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAV---PPVYKVEWRHNNKTL-HHNIAQGIIM----------TNQSLVLQRVNRQSAG 73 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~~i~W~~~~~~~-~~~~~~~~~~----------~~~~l~i~~~~~~d~g 73 (207)
|...+.+..+.+|++++|.|.+.+. |.+ .+.|||+.... .......+.. ....|.|.+++..|+|
T Consensus 10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG 88 (126)
T 2dav_A 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG 88 (126)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCC-EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred EEEcCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCE
Confidence 4455788889999999999998764 666 99999974211 1100111111 1356999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEe-CC
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMY-SP 99 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~-~~ 99 (207)
.|+|++.|..+.. +..+.|.|.. ++
T Consensus 89 ~Y~Cevsn~~g~~-~~~~~L~V~~~~~ 114 (126)
T 2dav_A 89 NYRCEVTYKDKFD-SCSFDLEVHESTG 114 (126)
T ss_dssp EEEEEEECSSCEE-EECCEEEEECCCC
T ss_pred EEEEEEEeCCCcE-EEEEEEEEEecCC
Confidence 9999999887654 5677899997 44
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-14 Score=82.39 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=64.0
Q ss_pred eeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 108 VLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...+.+|+.+.|.|.+.+. |.+ .+.|++++..+.. .....+...+....|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 10 ~~~v~~G~~v~l~C~~~g~~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 87 (97)
T 2bk8_A 10 HAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLEN-SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87 (97)
T ss_dssp CEEECTTCCEEEEEEEESCCTTC-EEEEEETTEECCS-SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred CEEEcCCCcEEEEEEEeccCCCC-EEEEEECCEECcC-CCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEE
Confidence 3457789999999999997 766 9999999876542 223334344556679999999999999999999999987666
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 88 ~~l~V~ 93 (97)
T 2bk8_A 88 AELFVK 93 (97)
T ss_dssp EEEEET
T ss_pred EEEEEE
Confidence 555443
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-15 Score=89.29 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=63.2
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe---------cCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---------TNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
..+..+.|.|.+.|.|.| .|+|+|||.++.......... ..+.|.|.+++..|+|.|+|.|.|..|.. .
T Consensus 13 ~~~~~~~l~c~v~G~P~P-~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~ 90 (126)
T 1he7_A 13 VEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-S 90 (126)
T ss_dssp CCCCEEEEEEEECCSSCC-EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-E
T ss_pred ccCccEEEEEEEeeeCCC-eEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE-E
Confidence 356789999999999998 999999999987643322111 13579999999999999999999999876 4
Q ss_pred ceEEEEEEeCCc
Q psy10918 89 NAFFLNVMYSPT 100 (207)
Q Consensus 89 ~~~~l~v~~~~~ 100 (207)
..+.|.|...|.
T Consensus 91 ~t~~l~v~~~P~ 102 (126)
T 1he7_A 91 ASIMAAFMDNPF 102 (126)
T ss_dssp EEEEECCCSCTT
T ss_pred EEEEEEEEcCCC
Confidence 466676665553
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-15 Score=87.98 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=61.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~ 94 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 94 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cEEEecCCCEEEEEEEccccCCC-EEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEE
Confidence 34557789999999999999887 99999998765432211111111223469999999999999999999999987666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 95 ~~l~V 99 (100)
T 3caf_A 95 YHLDV 99 (100)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-15 Score=88.30 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=62.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+++.|.|.+.+.|.+ .+.|++++..+...... .....+.+|.|.+++..|+|.|+|.+.|..|.. ..
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~ 93 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NH 93 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred cEEEecCCCEEEEEEEccccCCC-EEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEE-EE
Confidence 34567789999999999988887 89999999887653322 122234589999999999999999999988764 44
Q ss_pred eEEEEE
Q psy10918 90 AFFLNV 95 (207)
Q Consensus 90 ~~~l~v 95 (207)
.+.|.|
T Consensus 94 ~~~l~V 99 (100)
T 3caf_A 94 TYHLDV 99 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=104.97 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
....+.+|+++.|.|.+.+ |.+ .+.|++++..+.... ..++...+++|.|.+++.+|+|.|+|.+.|..|.. +..
T Consensus 254 ~~v~v~~G~~~~l~C~~~g-p~p-~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~ 330 (361)
T 2xot_A 254 SAWEAHLGDTLTIRCDTKQ-QGM-TKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNE-TLS 330 (361)
T ss_dssp CCCEEETTCCEEECCCCSS-TTC-EEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEE-EEE
T ss_pred cCceecCCCeEEEEeEeeC-CCC-eEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCcc-EEE
Confidence 4557889999999999988 776 999999776544321 11233367789999999999999999999987655 446
Q ss_pred EEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceE
Q psy10918 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 132 (207)
+.|.|...+ ..|+.+.+.|.+.|.|+| .|
T Consensus 331 ~~l~V~~~~------------~~g~~~~l~C~~~g~P~P-~i 359 (361)
T 2xot_A 331 VELKVYNFT------------LHGHHDTLNAAADPWSHP-QF 359 (361)
T ss_dssp EEEEEESSC------------CC-------------------
T ss_pred EEEEEEeee------------ccCCceEEEEEeCCCCCC-cc
Confidence 667764311 467789999999999887 55
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=85.92 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=62.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCC---CcEEEEEECCcccccc-ccCCeEe----------cCCeEEEEecCCCCCe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHN-IAQGIIM----------TNQSLVLQRVNRQSAG 73 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~~~~~~~~-~~~~~~~----------~~~~l~i~~~~~~d~g 73 (207)
+...+....+.+|++++|.|.+.+.|. + .+.|+|++...... ....+.. ....|.|.+++..|+|
T Consensus 7 f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 85 (108)
T 3cx2_A 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG 85 (108)
T ss_dssp CSBCCCCEEEETTCCEEEEEEEECC-CCSCC-EEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCE
T ss_pred EEeCCCcEEEeCCCCEEEEEEECCCccCCCc-EEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCE
Confidence 334466777899999999999998876 6 99999987322111 1111111 1357999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEE
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|+|.+.|..|.. ...+.|.|.
T Consensus 86 ~Y~C~a~N~~G~~-~~~~~L~V~ 107 (108)
T 3cx2_A 86 SYRCEVSTKDKFD-CSNFNLTVH 107 (108)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEE
T ss_pred EEEEEEecCCCce-EEEEEEEEe
Confidence 9999999988865 456667764
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=83.71 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=64.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+ +.+ .+.|++++..+... ....+..++....|.|.++..+|+|.|+|.|.| . .
T Consensus 16 ~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~--~ 86 (103)
T 2edf_A 16 EDQWVAPGEDVELRCELSR-AGT-PVHWLKDRKAIRKS-QKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----S--K 86 (103)
T ss_dssp CCEEECTTSCEEECCEESS-SSC-CCCEEESSCBCCCS-SSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----C--E
T ss_pred CccEEcCCCCEEEEEEEeC-CCC-cEEEEECCEEccCC-CCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----C--C
Confidence 3345779999999999997 665 89999998775432 244555566677899999999999999999999 2 3
Q ss_pred eEEEEeecccCCCCC
Q psy10918 187 CVFHIVSAVTFHPPF 201 (207)
Q Consensus 187 ~~~~v~~~~~~~~p~ 201 (207)
..+.+.+..+|.+|.
T Consensus 87 ~~~~l~V~~~p~~~~ 101 (103)
T 2edf_A 87 STASLHVEEKASGPS 101 (103)
T ss_dssp EEEEEEECCCSSSSC
T ss_pred cEEEEEEeCCCCCCC
Confidence 335555666776664
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.4e-15 Score=88.52 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=65.5
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccC---CCCcEEEEEECCc-cccccccCCeEe----------cCCeEEEEecCCC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAV---PPVYKVEWRHNNK-TLHHNIAQGIIM----------TNQSLVLQRVNRQ 70 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~~i~W~~~~~-~~~~~~~~~~~~----------~~~~l~i~~~~~~ 70 (207)
++.|...+.+..+.+|++++|.|.+.+. |.| .|.|||+.. .+.......+.. ....|.|.+++..
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKP-TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCC-CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 3445556788889999999999999764 566 999999742 111111111111 1356999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
|+|.|+|++.|..|.. +..+.|.|..
T Consensus 91 D~G~Y~Cevsn~~g~~-s~~~~L~V~~ 116 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCD-SCGFNIDVEA 116 (118)
T ss_dssp TCSCEEEEEECSSCEE-EEEECCEEEC
T ss_pred hCEEEEEEEEEcCCcE-EEEEEEEEEc
Confidence 9999999999988854 6677788775
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=90.65 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=64.7
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-cCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+... ....+.. ......|.|.++...|+|.|+|.|.|..|.....
T Consensus 50 ~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 127 (154)
T 1fhg_A 50 DMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKES-RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127 (154)
T ss_dssp CEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCS-SSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cEEEeCCCeEEEEEEEEEecCC-EEEEEECCEECCCC-CcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEE
Confidence 3467899999999999999987 99999998765432 2222322 2335679999999999999999999999987666
Q ss_pred eEEEEee
Q psy10918 187 CVFHIVS 193 (207)
Q Consensus 187 ~~~~v~~ 193 (207)
+.+.|..
T Consensus 128 ~~l~V~~ 134 (154)
T 1fhg_A 128 AELLVET 134 (154)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 6665553
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=85.49 Aligned_cols=86 Identities=19% Similarity=0.362 Sum_probs=65.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|+++.|.|.+.+ +.+ .+.|++++..+.......+...+. .|.|.+++.+|+|.|.|.+.|
T Consensus 11 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---- 84 (103)
T 2edf_A 11 IIKPLEDQWVAPGEDVELRCELSR-AGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA---- 84 (103)
T ss_dssp EEECCCCEEECTTSCEEECCEESS-SSC-CCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----
T ss_pred EEecCCccEEcCCCCEEEEEEEeC-CCC-cEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----
Confidence 334566778899999999999987 555 899999998887644333333333 699999999999999999987
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
....+.|.|..+|.
T Consensus 85 -~~~~~~l~V~~~p~ 98 (103)
T 2edf_A 85 -SKSTASLHVEEKAS 98 (103)
T ss_dssp -CEEEEEEEECCCSS
T ss_pred -CCcEEEEEEeCCCC
Confidence 24567788876664
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=85.35 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=64.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|++++|.|.+.+.+ + .+.|++++..+.... .....+..|.|.+++..|+|.|.|.+.|..|.. ...+
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p-~i~W~k~g~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~ 84 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLAESN--RTRITGEEVEVQDSVPADSGLYACVTSSPSGSD-TTYF 84 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-C-EEEEEESSSBCCCCS--SEEECSSEEEETTCCTTTCEEEEEEEEETTEEE-EEEE
T ss_pred CcCeEEeCCCcEEEEEEecCCC-C-eEEEEECCEECCCCC--cEEEECCEEEEccCCHHHCEEEEEEEEeCCceE-EEEE
Confidence 4456788999999999998876 5 999999998876533 334447789999999999999999999887754 4455
Q ss_pred EEEEEeC
Q psy10918 92 FLNVMYS 98 (207)
Q Consensus 92 ~l~v~~~ 98 (207)
.|.|...
T Consensus 85 ~l~V~~~ 91 (99)
T 2cr3_A 85 SVNVSDA 91 (99)
T ss_dssp EECBCSC
T ss_pred EEEEecC
Confidence 5655543
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=86.55 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=65.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+........|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 22 ~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 99 (106)
T 1nct_A 22 RSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLST-SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 99 (106)
T ss_dssp CCEEESSSSCEECCEEEECSSCC-BCCBCSSSSCCTT-CSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEE
T ss_pred CCEEEeCCCcEEEEEEEEEcCCC-EEEEEECCEECCC-CCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEE
Confidence 34457799999999999999887 9999998876532 223344444556789999999999999999999999987666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 100 ~~l~V 104 (106)
T 1nct_A 100 FTLTI 104 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=83.63 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=60.8
Q ss_pred CCceeeeeeCCcEEEEEEeccCCC---CceEEEEEcCceeeecc--ceeEEe----ec--CceEEEEEecCCCCCCeEEE
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPP---DVKFSWTFNNSAETVNV--AQAHIL----RS--GTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~--~~~~~~----~~--~~~~~l~i~~~~~~~~g~y~ 173 (207)
.+....+..|+.+.|.|.+.+.|. + .+.|++++....... ....+. .. .....|.|.+++.+|+|.|+
T Consensus 10 ~p~~~~v~~G~~v~L~C~~~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 88 (108)
T 3cx2_A 10 RPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYR 88 (108)
T ss_dssp CCCCEEEETTCCEEEEEEEECC-CCSCC-EEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEE
T ss_pred CCCcEEEeCCCCEEEEEEECCCccCCCc-EEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEE
Confidence 345556789999999999999886 6 999999763211000 111111 00 12457999999999999999
Q ss_pred EEEecCCCCCccceEEEEe
Q psy10918 174 CWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 174 C~~~n~~g~~~~~~~~~v~ 192 (207)
|.|.|..|..+..+.|.|.
T Consensus 89 C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 89 CEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp EEEECSSCEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEEEe
Confidence 9999999988666666553
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=84.44 Aligned_cols=86 Identities=14% Similarity=0.272 Sum_probs=64.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC--CeEecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ--GIIMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+...+....+.+|++++|.|.+.+ +.+ .+.|++++..+...... .+...+ ..|.|.+++.+|+|.|.|.+.|
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-- 85 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-- 85 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSC-CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCC-eEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--
Confidence 344566778899999999999977 555 89999999988765422 222222 4699999999999999999986
Q ss_pred CCCccceEEEEEEeCCc
Q psy10918 84 GDGESNAFFLNVMYSPT 100 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~ 100 (207)
....+.|.|..+|.
T Consensus 86 ---~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 86 ---GQSSAKLSVDLKSG 99 (103)
T ss_dssp ---EEEEEEEEEECCCS
T ss_pred ---CcEEEEEEEeCCCC
Confidence 24466788876553
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=84.85 Aligned_cols=83 Identities=11% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+....+.+|+.+.|.|.+.+.+.+..+.|+++|..+... .+..+..++....|.|.++..+|+|.|+|.|.|. .
T Consensus 14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~-~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~----~ 88 (104)
T 2eny_A 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS-SRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL----T 88 (104)
T ss_dssp CCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC-SSCEEEEETTEEEEEECSCCTTTCSCEEEEETTE----E
T ss_pred cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC-CCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCe----e
Confidence 4455678899999999999988754489999999876432 3445556677778999999999999999998653 2
Q ss_pred cceEEEEe
Q psy10918 185 VPCVFHIV 192 (207)
Q Consensus 185 ~~~~~~v~ 192 (207)
.++.+.|.
T Consensus 89 ~~a~L~V~ 96 (104)
T 2eny_A 89 SKASLIVR 96 (104)
T ss_dssp EEECEEEE
T ss_pred EEEEEEEe
Confidence 34444444
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=86.55 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=63.6
Q ss_pred EEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeecC--ceEEEEEecCCCCC
Q psy10918 92 FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRSG--TLSVVAYSPNSELD 168 (207)
Q Consensus 92 ~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~--~~~~l~i~~~~~~~ 168 (207)
.|.|.++|.+...... .......|.|.+.|.|.+ .+.|+++|..+...... ......+ ....|.|.++..+|
T Consensus 2 ~L~V~~pP~i~~~~~~----~~~~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 76 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEEP----ELRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN 76 (118)
T ss_dssp --CCCCCCCCCCCCCC----CCCCEEEEEEEEECSSCC-EEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred EEEEecCCceeccCCC----eeccceEEEEEeeeeCCC-eEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence 4566667765433221 123567899999999987 99999998875543211 1111111 34579999999999
Q ss_pred CeEEEEEEecCCCCCccceEEE
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+|.|+|.|.|..|....++.+.
T Consensus 77 ~G~Y~C~a~N~~G~~~~~~~l~ 98 (118)
T 1wwc_A 77 NGNYTLIAKNPLGTANQTINGH 98 (118)
T ss_dssp CEEEEEEEEETTEEEEEEEEEC
T ss_pred CEEEEEEEECCCCeEeeEEEEE
Confidence 9999999999999876665543
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=79.57 Aligned_cols=76 Identities=9% Similarity=0.204 Sum_probs=58.5
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+.+|+.+.|.|.+.+ |.| .+.|+++|..+.. .....+..++....|.|.++..+|+|.|+|.|.| .+.++.
T Consensus 6 v~~~~G~~v~l~C~vs~-p~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~ 78 (84)
T 2lu7_A 6 VRSTPGGDLELVVHLSG-PGG-PVRWYKDGERLAS-QGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL 78 (84)
T ss_dssp EEECTTSCEEEECCCSC-CST-TCEEEETTEECCC-CSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred EEEecCCCEEEEEEECC-CCc-EEEEEECCEEccc-cccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence 45678999999999865 776 8999999987643 3345566677777899999999999999999855 334444
Q ss_pred EEE
Q psy10918 189 FHI 191 (207)
Q Consensus 189 ~~v 191 (207)
+.|
T Consensus 79 l~V 81 (84)
T 2lu7_A 79 VSV 81 (84)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=84.11 Aligned_cols=64 Identities=17% Similarity=0.341 Sum_probs=51.7
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEee
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+.+|+++.|.|.+.+ |.+ .+.|+|||.++.......+...+. +|.|.+++.+|+|.|.|.+.|
T Consensus 17 ~~~~g~~v~l~C~v~~-p~~-~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 82 (91)
T 2lvc_A 17 HAITSECVMLACEVDR-EDA-PVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD 82 (91)
T ss_dssp ECCTTCCEEEEEECSC-TTS-CCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred EEECCCcEEEEEEECC-CCc-EEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence 3467999999999865 666 899999999998765544444443 699999999999999999865
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=86.72 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=63.4
Q ss_pred CcccCCCcEEEEeEeccC--CCCcEEEEEECCccccc----cccCCe------EecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNKTLHH----NIAQGI------IMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~----~~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+|+++.|.|.+.+. +.+ .+.|++++..+.. ...... .....+|.|.+++.+|+|.|+|.+.|.
T Consensus 18 v~v~~G~~v~L~C~~~g~p~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 96 (122)
T 3s35_X 18 IELSVGEKLVLNCTARTELNVGI-DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG 96 (122)
T ss_dssp EEEEETCCEEEEEEEEECTTCCC-EEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred EEEecCCeEEEEEEEEcCCCCcE-EEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence 378899999999999874 334 8999999875432 011111 113457999999999999999999998
Q ss_pred CCCCccceEEEEEEeCCccc
Q psy10918 83 EGDGESNAFFLNVMYSPTCK 102 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~~~~ 102 (207)
.|.. ...+.|.|..+|.+.
T Consensus 97 ~g~~-~~~~~l~V~~~p~i~ 115 (122)
T 3s35_X 97 LMTK-KNSTFVRVHEKPFVA 115 (122)
T ss_dssp SCEE-EEEEEEEEEEEECC-
T ss_pred CCce-EEEEEEEEeccCeEE
Confidence 8866 457788888777543
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=81.43 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=63.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+.+|+.+.|.|.+.+.+.+ +.|++++..+... ....+...+....|.|.+++.+|+|.|+|.|.|..+ .+
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~--v~W~k~g~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~----~~- 91 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP--ATWYKDGQKVEES-ELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA----FF- 91 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC--CEEEETTEECCCB-TTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC----CE-
T ss_pred EEEeCCCcEEEEEEecCCCCc--cEEeeCCEECCCC-CCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE----EE-
Confidence 457899999999999988875 8999998765432 234455566677899999999999999999999632 43
Q ss_pred EEEeecccCCCCC
Q psy10918 189 FHIVSAVTFHPPF 201 (207)
Q Consensus 189 ~~v~~~~~~~~p~ 201 (207)
.+.+..+|.+|.
T Consensus 92 -~l~V~~~P~pp~ 103 (104)
T 2e6p_A 92 -GVTVQDPSGPSS 103 (104)
T ss_dssp -EEEEECCCCSSC
T ss_pred -EEEEcCCCCCcC
Confidence 344456666653
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-14 Score=85.99 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=68.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE-e--cCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-M--TNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~--~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+...+.+..+.+|+++.|.|.+.+.+.+ .+.|++++..+.......+. . ....|.|.+++.+|+|.|+|.+.
T Consensus 15 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g--- 90 (115)
T 2cr6_A 15 HIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAG--- 90 (115)
T ss_dssp EEEECCCEEEEETTSCEECCCEEESTTCC-SCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEET---
T ss_pred eEeccCccEEEeCCCcEEEEEEEcCCCCC-ccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEEC---
Confidence 45556677889999999999999998877 89999999988765433332 1 12469999999999999999943
Q ss_pred CCCccceEEEEEEeCCccc
Q psy10918 84 GDGESNAFFLNVMYSPTCK 102 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~ 102 (207)
.. ...+.|.|..+|.+.
T Consensus 91 -~~-~~~~~L~V~~~p~~~ 107 (115)
T 2cr6_A 91 -DQ-RASAALRVTEKPSVF 107 (115)
T ss_dssp -TE-ECCEEEEEECCSSCC
T ss_pred -Ce-eEEEEEEEECCCcee
Confidence 22 345778898777644
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-14 Score=84.42 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=62.6
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
..+.+|+++.|.|.+. .+.+ .+.|++++..+.......+...+ ..|.|.+++.+|+|.|.|.+.| .+..+.
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~ 95 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWA-EVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFT 95 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTC-CCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----CEEEEE
T ss_pred EEEEcCCeEEEEEEec-CCCC-eEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec-----CcEEEE
Confidence 4567899999999985 5666 89999999888764433333333 4799999999999999999987 255778
Q ss_pred EEEEeCCccc
Q psy10918 93 LNVMYSPTCK 102 (207)
Q Consensus 93 l~v~~~~~~~ 102 (207)
|.|..+|...
T Consensus 96 l~V~~~p~~~ 105 (113)
T 2cpc_A 96 VTVTEPPVRI 105 (113)
T ss_dssp EEEECCCCCC
T ss_pred EEEecCCchh
Confidence 8888777543
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-14 Score=83.04 Aligned_cols=82 Identities=13% Similarity=0.311 Sum_probs=63.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|+++.|.|.+.+ .+ .+.|++++..+... .+....+..|.|.+++..|+|.|.|.+.|..|.. ...+
T Consensus 8 p~~~~v~~G~~~~l~C~~~~--~p-~v~W~k~g~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~ 81 (95)
T 4hwu_A 8 PEAYVVAPGESLELQCMLKD--AA-VISWTKDGVHLGPN--NRTVLIGEYLQIKGATPRDSGLYACTAARTVDSE-TWIF 81 (95)
T ss_dssp CEEEEECTTSCEEEECCCCT--TC-EEEEEETTEEECCC--SSEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred CCcEEECCCCEEEEEEEeCC--CC-EEEEEECCEECCCC--ceEEEeCCEEEECcCCcccCEEEEEEEccCCCcE-EEEE
Confidence 44566789999999999886 34 99999999888653 2344557789999999999999999999888754 4466
Q ss_pred EEEEEeCC
Q psy10918 92 FLNVMYSP 99 (207)
Q Consensus 92 ~l~v~~~~ 99 (207)
.|.|..++
T Consensus 82 ~l~V~~~~ 89 (95)
T 4hwu_A 82 MVNVTDAA 89 (95)
T ss_dssp EEEECCC-
T ss_pred EEEEeCCc
Confidence 66666443
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.5e-14 Score=85.10 Aligned_cols=92 Identities=18% Similarity=0.349 Sum_probs=67.2
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc----CCeEecCCeEEEE-----ecCCCCCeeeEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA----QGIIMTNQSLVLQ-----RVNRQSAGNYTC 77 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~-----~~~~~d~g~Y~C 77 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... ......++.+.+. +++..|+|.|.|
T Consensus 11 ~i~~~p~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C 89 (117)
T 2v9t_A 11 RIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVC 89 (117)
T ss_dssp EEEECCCCEEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEE
T ss_pred eeEcCCCCEEEcCCCcEEEEEECCccCCC-eEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEE
Confidence 34445667778999999999999999988 8999999988764321 1122334444444 457899999999
Q ss_pred EEeeeCCCCccceEEEEEEeCC
Q psy10918 78 VGFNIEGDGESNAFFLNVMYSP 99 (207)
Q Consensus 78 ~~~~~~~~~~~~~~~l~v~~~~ 99 (207)
.+.|..|...+..+.|.+....
T Consensus 90 ~a~N~~G~~~s~~~~l~~~~~~ 111 (117)
T 2v9t_A 90 VARNYLGEAVSHDASLEVAAAA 111 (117)
T ss_dssp EEEETTEEEECCCEEEEEC---
T ss_pred EEEeCccceEeeeEEEEhhhhh
Confidence 9999999887778888776543
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=84.53 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=61.2
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+.... . ........|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 20 ~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~~--~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 94 (99)
T 2yr3_A 20 DCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYAR--S--TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94 (99)
T ss_dssp CEEECTTCCEEEECEEEEESCC-CCEEEESSSBCSSCC--C--EEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEEC
T ss_pred CCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEECcccc--e--EeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence 3457799999999999999987 999999987654221 1 1223346799999999999999999999999876555
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 95 ~l~V 98 (99)
T 2yr3_A 95 WVTV 98 (99)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 5443
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=93.28 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=102.2
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+..|++++|.|.+.+.+....|.|++++..+... .......++.|.|.+++..|+|.|.|.. .|.. ...+.|.|.
T Consensus 18 ~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~-~~~~~L~V~ 92 (325)
T 1n26_A 18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRP-AGTVHLLVD 92 (325)
T ss_dssp ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-CEEEEEESSEEEECSCCGGGCEEEEEES---SSSC-SCEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCCceEEEEECCccCCcc-ccccccccceEEecccchhhCeEeEEEe---CCEE-eeeEEEEec
Confidence 3589999999998875533399999988765321 1123345678999999999999999993 4444 446778888
Q ss_pred eCCcccCCCCceeeeeeCCcEEEEEEeccCC---CCce--EEEEEc-Cce-eeeccceeEEeecCceEEEEEecCC-CCC
Q psy10918 97 YSPTCKPHQQRVLGVARQEKVNISCEVDANP---PDVK--FSWTFN-NSA-ETVNVAQAHILRSGTLSVVAYSPNS-ELD 168 (207)
Q Consensus 97 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~--~~W~~~-~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~ 168 (207)
.+|..+. ......+....+.|...... .+.. +.+.+. +.. ..... ............+.+.... ...
T Consensus 93 ~pP~~P~----l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~c~~~~~~~~~~c~i~~~~~~~~ 167 (325)
T 1n26_A 93 VPPEEPQ----LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQE-PCQYSQESQKFSCQLAVPEGDSS 167 (325)
T ss_dssp CCCCCCC----CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEE-EEEEETTTTEEEEEECCCTTCCC
T ss_pred cCCCCCc----eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccc-cCCCCCCCCCEEEEECCCcccCc
Confidence 7765432 11111343446666654221 1112 222222 110 00000 0000112233345565543 234
Q ss_pred CeEEEEEEecCCCCCcc-ceEEEEeecccCCCCCCcee
Q psy10918 169 YGTLICWGSNKIGHQRV-PCVFHIVSAVTFHPPFNQKL 205 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~-~~~~~v~~~~~~~~p~~~~~ 205 (207)
...|+|.|.|..|.... ...+.+....+|+||.++++
T Consensus 168 ~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v 205 (325)
T 1n26_A 168 FYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITV 205 (325)
T ss_dssp EEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEE
T ss_pred EEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEE
Confidence 45678999999986532 33344444567889987765
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-13 Score=105.26 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=119.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEE-EE--ECCccccccccCCe--EecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVE-WR--HNNKTLHHNIAQGI--IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~-W~--~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+|+++.|.|.+.+.|.+ .+. |+ +++..+.......+ ....++|.|.+++..|.|.|.|.+.|..|..
T Consensus 171 ~~~~~v~~G~~v~l~C~~~g~P~p-~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~ 249 (731)
T 2v5y_A 171 IQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249 (731)
T ss_dssp CCCEEEETTSCEEEEEEEESCCCT-TCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEE
T ss_pred ccceEEeCCCcEEEEEEeCCCCCC-ceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCc
Confidence 345678899999999999999887 676 88 67776653211111 0112579999999999999999999998864
Q ss_pred ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC---CC--CceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN---PP--DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 87 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~---~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
.+....|.|..+|..+. .+... ......+.|.|..... .+ ...+.|...+... .... ......+.+
T Consensus 250 ~s~~~~l~V~~~P~~~~-~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~------~~~~-~~~~~~~~i 320 (731)
T 2v5y_A 250 ISNYAELVVKEPPVPIA-PPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW------NDRQ-PVDSTSYKI 320 (731)
T ss_dssp ECCCEEEEEECCCCBSS-CCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSC------EEEE-ECCSSEEEE
T ss_pred ceeeEEEEEecCCCCCC-Cccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCc------eEEe-ccCcceEEE
Confidence 45567788887765432 22222 2345678888876432 11 1245565443211 1111 122245788
Q ss_pred ecCCCCCCeEEEEEEe--cCCCCCccceEEEEe--ecccCCCCCCcee
Q psy10918 162 SPNSELDYGTLICWGS--NKIGHQRVPCVFHIV--SAVTFHPPFNQKL 205 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~--n~~g~~~~~~~~~v~--~~~~~~~p~~~~~ 205 (207)
.++...+...|+|.|. |..|....+..+.+. ...+|.+|.++++
T Consensus 321 ~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~ 368 (731)
T 2v5y_A 321 GHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEV 368 (731)
T ss_dssp CSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEE
T ss_pred eCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEE
Confidence 8998888888899999 998876544333333 3456678887755
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=81.64 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=64.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.+.+ +.|++++..+... .+..+..++....|.|.++..+|+|.|+|.|.|. ....+
T Consensus 16 ~~~~v~~G~~v~l~C~~~~~~~~--v~W~k~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~ 90 (106)
T 2dlt_A 16 ADLTVKAAEQAVFKCEVSDEKVT--GKWYKNGVEVRPS-KRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLS 90 (106)
T ss_dssp CCEEEESSCCEECCCEESCSSCE--EEEEESSCBCCCC-SSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CCCCC
T ss_pred CCeEEeCCCeEEEEEEEcCCCcc--eEEEcCCEECcCC-CCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--CceEE
Confidence 34567899999999999987653 9999998875432 3445555666678999999999999999999998 33445
Q ss_pred eEEEEeecccCC
Q psy10918 187 CVFHIVSAVTFH 198 (207)
Q Consensus 187 ~~~~v~~~~~~~ 198 (207)
+.+.|.......
T Consensus 91 ~~l~V~~~~~~~ 102 (106)
T 2dlt_A 91 AKLNFLEIKVSG 102 (106)
T ss_dssp BCEEEECCCCCS
T ss_pred EEEEEEEEeCCC
Confidence 666666443333
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-14 Score=83.55 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=61.5
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE---ec----CCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---MT----NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
..|..+.|.|.+.|.|.| .++|++++..+......... .. .+.|.|.+++.+|+|.|+|.+.|..|.. ...
T Consensus 14 ~~~~~~~~~c~v~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~ 91 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQ 91 (103)
T ss_dssp CCCCEEEEEEEEECSSCC-EEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEE
T ss_pred eECcEEEEEEEEEEeCCC-EEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE-eEE
Confidence 457789999999999998 99999999988764321111 11 2349999999999999999999998876 446
Q ss_pred EEEEEEeCC
Q psy10918 91 FFLNVMYSP 99 (207)
Q Consensus 91 ~~l~v~~~~ 99 (207)
+.|.|...|
T Consensus 92 ~~l~V~~~P 100 (103)
T 1wwb_X 92 ISAHFMGWP 100 (103)
T ss_dssp EEECCSCCC
T ss_pred EEEEECCCC
Confidence 667666544
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=91.42 Aligned_cols=95 Identities=27% Similarity=0.425 Sum_probs=74.2
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+.... ....+...+....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 27 ~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 105 (215)
T 3mtr_A 27 AVYTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE 105 (215)
T ss_dssp EEEECTTCCEEEEEEEEEESCC-EEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEE
T ss_pred eEEEECCCCEEEEEEEeecCCC-EEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEE
Confidence 3557789999999999999987 999999987754332 23344444556789999999999999999999999977444
Q ss_pred eEEEEeecccCCCCCCcee
Q psy10918 187 CVFHIVSAVTFHPPFNQKL 205 (207)
Q Consensus 187 ~~~~v~~~~~~~~p~~~~~ 205 (207)
+.+.+..+|.+|....+
T Consensus 106 --~~l~v~~~P~~p~~~~~ 122 (215)
T 3mtr_A 106 --FILVQADTPSSPSIDQV 122 (215)
T ss_dssp --EEEEECCCCCCCEEEEE
T ss_pred --EEEEECCCCCCCcceEE
Confidence 56666778888876543
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-14 Score=84.03 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=64.6
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..+...+....+.+|+++.|.|.+.+.+. .+.|++++..+.......+...+ ..|.|.+++.+|+|.|+|.+.|..
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~--~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 86 (106)
T 2dlt_A 9 LEVLQDIADLTVKAAEQAVFKCEVSDEKV--TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA 86 (106)
T ss_dssp CCEEECCCCEEEESSCCEECCCEESCSSC--EEEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSC
T ss_pred CEEecCCCCeEEeCCCeEEEEEEEcCCCc--ceEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCC
Confidence 34555677888999999999999988765 39999999988765433333333 379999999999999999999872
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
. .....|.|.
T Consensus 87 ~---~~~~~l~V~ 96 (106)
T 2dlt_A 87 L---SLSAKLNFL 96 (106)
T ss_dssp C---CCCBCEEEE
T ss_pred c---eEEEEEEEE
Confidence 2 234456665
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=78.99 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=60.4
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.+ +++ .+.|+++|..+... .+..+..++....|.|.++..+|+|.|+|.|.|.. .+
T Consensus 13 ~~~~v~~G~~v~l~C~v~~-~~~-~v~W~k~g~~i~~~-~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~----~s 85 (93)
T 1waa_A 13 YGVEVFVGETAHFEIELSE-PDV-HGQWKLKGQPLAAS-PDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK----SA 85 (93)
T ss_dssp CCEEEETTSCEEEEEEESS-SSC-CCEEEETTEECCCB-TTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE----EE
T ss_pred cceEEeCCCCEEEEEEECC-CCC-eEEEEECCEECcCC-CCEEEEEECCEEEEEECCCChhhCEEEEEEECCCc----EE
Confidence 3456789999999999976 444 89999999876432 34456666777789999999999999999999853 34
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 86 a~L~V~ 91 (93)
T 1waa_A 86 ANLKVK 91 (93)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455543
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=95.97 Aligned_cols=178 Identities=12% Similarity=0.154 Sum_probs=97.1
Q ss_pred cCCCcccCCCcEEEEeEeccC-----CCCcEEEEEECCccccccccCCeEecC---CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-----PPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-----~~~~~i~W~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.+..+..|++++|.|.+.+. +.+ .+.|++++..+.... ......+ +.|.|.+++..|+|.|.|.+.+..
T Consensus 7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~-~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~ 84 (313)
T 2d9q_B 7 VSAPIVHLGDPITASCIIKQNCSHLDPEP-QILWRLGAELQPGGR-QQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNS 84 (313)
T ss_dssp ESCSEECTTCCEEEEECCCTTSCSSCSCS-CCEEESSSCBCTTCE-ECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSS
T ss_pred CCCcEEcCCCCEEEEEEECCCCCCCCccc-ceEEEeCCEECCccc-eEEEecCeEEEEEEEeccCCCccceEEeeecCCC
Confidence 456678899999999999886 345 899999998875421 1111222 469999999999999999886432
Q ss_pred CCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCcee---eec-------------cc-
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE---TVN-------------VA- 146 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~---~~~-------------~~- 146 (207)
+.. ...+.|.|..+|.. ...+.|...+......+.|....... ... ..
T Consensus 85 ~~~-~~~~~l~v~~~P~~--------------P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~ 149 (313)
T 2d9q_B 85 LQI-LDQVELRAGYPPAI--------------PHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDS 149 (313)
T ss_dssp EEE-EEEEEEEECCCCCC--------------CEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCC
T ss_pred cee-EEEEEEccCCCCCC--------------CccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcc
Confidence 211 22344555444432 22333443322222244443211100 000 00
Q ss_pred eeEEeecCceEEEEEe--cCCCCCCeEEEEEEecCCCCCcc-ceEEEEeecccCCCCCCceec
Q psy10918 147 QAHILRSGTLSVVAYS--PNSELDYGTLICWGSNKIGHQRV-PCVFHIVSAVTFHPPFNQKLT 206 (207)
Q Consensus 147 ~~~~~~~~~~~~l~i~--~~~~~~~g~y~C~~~n~~g~~~~-~~~~~v~~~~~~~~p~~~~~~ 206 (207)
..............+. .+.....-.|++.|.|..|.... ...+......+|+||.++++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~ 212 (313)
T 2d9q_B 150 ILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMD 212 (313)
T ss_dssp EEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECC
T ss_pred cccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEE
Confidence 0000001111223443 35666666777999999987532 222322333578888877653
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=81.94 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=66.0
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc----------cCCeEecC--CeEEEEecCCCCC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI----------AQGIIMTN--QSLVLQRVNRQSA 72 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~----------~~~~~~~~--~~l~i~~~~~~d~ 72 (207)
.+.+...+.+..+.+|+++.|.|.+.+ .+ .+.|++||.++.... ...+..++ .+|.|.+++.+|+
T Consensus 8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p-~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~ 84 (112)
T 2e6q_A 8 TARLVAGLEDVQVYDGEDAVFSLDLST--II-QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS 84 (112)
T ss_dssp CCCEEECCCCEEEETTCEEEEEEEESS--CC-CCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred CcEEecCCCCeEEcCCCcEEEEEEECC--CC-eEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence 345667789999999999999999987 44 899999999998754 22222222 2699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEEeCCc
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 100 (207)
|.|.|..-+. . ..+..|.|..+|.
T Consensus 85 G~Y~~~~~~~---~-~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 85 GALVGFSCPG---V-QDSAALTIQESSG 108 (112)
T ss_dssp SEEEEEEETT---E-EEEEEEEEECSSC
T ss_pred ccEEEEEECC---e-eEEEEEEEeCCCc
Confidence 9997743321 1 3367788887764
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-13 Score=79.25 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=61.2
Q ss_pred eecCC-CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNP-DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~-~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+.+ ..+.+|+++.|.|.+. .+.+ .+.|++++..+.......+...+ ..|.|.+++.+|+|.|.|.+ +..
T Consensus 12 ~~~~~~~~v~~G~~v~l~C~~~-~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~ 85 (100)
T 2yuv_A 12 KILDPAYQVDKGGRVRFVVELA-DPKL-EVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDE 85 (100)
T ss_dssp ECCCSCEEECTTEEEEEEEEES-CTTS-CEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTE
T ss_pred ecCCCccEEcCCCcEEEEEEec-CCCc-eEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCc
Confidence 34444 4677999999999998 5666 99999999988764433333333 25999999999999999998 323
Q ss_pred ccceEEEEEEeCC
Q psy10918 87 ESNAFFLNVMYSP 99 (207)
Q Consensus 87 ~~~~~~l~v~~~~ 99 (207)
...+.|.|..+|
T Consensus 86 -~~~~~l~V~~~P 97 (100)
T 2yuv_A 86 -KCSTELFVRSGP 97 (100)
T ss_dssp -EEEEEEEECCSC
T ss_pred -eEEEEEEEecCC
Confidence 445667777655
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=80.13 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=60.5
Q ss_pred cCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 12 LNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
+....+.+|+++.|.|.+. +.+.+ .+.|++++..... ......+++|.|.+++.+|+|.|.|.+.|..|.. ...
T Consensus 17 ~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~ 91 (98)
T 1gl4_B 17 QRSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNGKLP---SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGT 91 (98)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGBCCC---TTEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEE
T ss_pred CCCeEEecCCCEEEEEeCCCCCCCc-EEEEEeCCCCCCC---ceeecCCCEEEEeCCChhhCEEEEEEecCCCCcc-ccE
Confidence 3555788999999999998 57776 9999997544332 1234456789999999999999999999988764 445
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
+.|.|
T Consensus 92 ~~l~V 96 (98)
T 1gl4_B 92 ATLHV 96 (98)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55555
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=82.30 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=67.6
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
.+.|.|...|......+....+.+|+.+.|.|.+.+. + .+.|++++..+... .+..+..++....|.|.++..+|+
T Consensus 10 ~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~ 85 (113)
T 2edh_A 10 SAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--A-PVEWWKGHETLRDG-DRHSLRQDGARCELQIRGLVAEDA 85 (113)
T ss_dssp CCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--C-CCEEEESSSBCCCS-SSEEEEEETTEEEEEECSCCSTTC
T ss_pred EEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--C-cEEEEECCEECCCC-CcEEEEECCCEEEEEECCCChhhC
Confidence 4456666544322223344567899999999999764 4 89999998875432 344555566677899999999999
Q ss_pred eEEEEEEecCCCCCccceEEEEeecccCC
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v~~~~~~~ 198 (207)
|.|+|.| +....++.+ .+..+|.
T Consensus 86 G~Y~C~a----~~~~~~~~l--~V~~~p~ 108 (113)
T 2edh_A 86 GEYLCMC----GKERTSAML--TVRAMPS 108 (113)
T ss_dssp EEEEEEE----TTEEEEEEE--EECCCCC
T ss_pred EEEEEEe----CCCCEEEEE--EEeCCCC
Confidence 9999999 444444444 4444443
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=81.14 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=59.6
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.+.| + .+.|++++..+... .+..+ . ...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 16 ~~~~~v~~G~~v~l~C~~~g~p-p-~i~W~k~g~~~~~~-~~~~~--~--~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 88 (95)
T 2ckn_A 16 VESLLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLVES-NRTRI--T--GEEVEVRDSIPADSGLYACVTSSPSGSDTT 88 (95)
T ss_dssp BCCEEECTTSCEEEECCEESSC-C-EEEEEBTTBCCCCC-SSEEE--C--SSEEEESSCCGGGSEEEEEEEEETTEEEEE
T ss_pred cceEEEcCCCeEEEEEECCCCC-C-ceEEEECCEecCCC-CCEEE--e--CCEEEECCCChHHCEEEEEEeccCCCcEEE
Confidence 4445678999999999999986 6 99999988765422 12222 1 235999999999999999999999988755
Q ss_pred ceEEEE
Q psy10918 186 PCVFHI 191 (207)
Q Consensus 186 ~~~~~v 191 (207)
.+.+.|
T Consensus 89 ~~~l~V 94 (95)
T 2ckn_A 89 YFSVNV 94 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555443
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=81.84 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=61.6
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
..+.+|+++.|.|.+.+.+.+ +.|++++..+.......+...+ ..|.|.+++..|+|.|+|.+.|. ...+.
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~--v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~~~ 92 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV-----SAFFG 92 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC--CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC-----CCCEE
T ss_pred EEEeCCCcEEEEEEecCCCCc--cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc-----eEEEE
Confidence 567899999999999888765 8999999888764433333333 36999999999999999999875 23567
Q ss_pred EEEEeCCc
Q psy10918 93 LNVMYSPT 100 (207)
Q Consensus 93 l~v~~~~~ 100 (207)
|.|..+|.
T Consensus 93 l~V~~~P~ 100 (104)
T 2e6p_A 93 VTVQDPSG 100 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 88887664
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-13 Score=78.86 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=55.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
....+..|+.+.|.|.+ +.|.+ .+.|+++|..+........+..++....|.|.+++.+|+|.|+|.|.|
T Consensus 24 ~~~~v~~G~~v~L~C~~-~~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 93 (104)
T 1pd6_A 24 PAYQVSKGHKIRLTVEL-ADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93 (104)
T ss_dssp SEEEEETTSCEEEEEEC-SSSSS-CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred CcEEEecCCCEEEEEEE-cCCCC-EEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence 33567899999999999 67776 899999998765432344555566677899999999999999999954
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.8e-13 Score=83.44 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=61.5
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceee-------eccceeE-EeecCceEEEEEecCCCCCCeEEEEEE
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAET-------VNVAQAH-ILRSGTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-------~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
.+....+..|+.+.|.|.+.+.+.+ .+.|++.+.... ....+.. .........|.|.+++.+|+|.|+|.+
T Consensus 44 ~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 122 (145)
T 1z9m_A 44 WTSDETVVAGGTVVLKCQVKDHEDS-SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122 (145)
T ss_dssp BCCCEEEETTSCEEEEEECSCCTTC-CEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEE
T ss_pred CCceEEEEcCCCEEEEEEEcCCCCc-EEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEE
Confidence 4455667899999999999988875 999995322110 1111122 112233567999999999999999999
Q ss_pred ecCCCCCccceEEEEeecccCCCCC
Q psy10918 177 SNKIGHQRVPCVFHIVSAVTFHPPF 201 (207)
Q Consensus 177 ~n~~g~~~~~~~~~v~~~~~~~~p~ 201 (207)
.|. +..... +.+.+..+|.+|.
T Consensus 123 ~n~-~~~~~~--~~L~V~~~P~~P~ 144 (145)
T 1z9m_A 123 FTM-PVRTAK--SLVTVLGIPQKPI 144 (145)
T ss_dssp CSS-SCEEEE--EEEEEECCCC---
T ss_pred EcC-CCceEE--EEEEEEeCCCCCc
Confidence 998 765444 4455556776663
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-14 Score=84.24 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC----CeEecC--CeEEEEecCCCCCeeeEEEEe
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ----GIIMTN--QSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~----~~~~~~--~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
.+...+....+.+|+++.|.|.+.+.+ + .+.|++++..+...... .+...+ ..|.|.+++.+|+|.|+|.+.
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~~~~~-~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 87 (101)
T 2edk_A 10 LIVTPLEDQQVFVGDRVEMAVEVSEEG-A-QVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITN 87 (101)
T ss_dssp CEEECCCCEEEESSCCCBCCEEESCSS-C-CCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECS
T ss_pred EEEecCCceEEcCCCCEEEEEEEeCCC-C-EEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEc
Confidence 344556778899999999999998877 5 89999999988764421 232333 259999999999999999998
Q ss_pred eeCCCCccceEEEEEEeC
Q psy10918 81 NIEGDGESNAFFLNVMYS 98 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v~~~ 98 (207)
|. .....|.|..+
T Consensus 88 n~-----~~~~~l~V~~~ 100 (101)
T 2edk_A 88 GG-----QCEAELIVEEK 100 (101)
T ss_dssp SC-----EECCBEEEECC
T ss_pred CC-----cEEEEEEEeCC
Confidence 62 22344666644
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=93.42 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=56.4
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC----CceEEEEEcC--ce
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP----DVKFSWTFNN--SA 140 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~--~~ 140 (207)
++..|+|.|.|.+. |.... .+.+.+..++.+. ..+....+.+|+.+.|.|.+.+.++ .+.+.|++++ ..
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~-~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~ 85 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFT-NYWMNWLRELVMT-QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS 85 (254)
T ss_dssp -------------------------------CCCEE-EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred ecCCccEEEEEcCc---hhhhh-hhhhheeeceeEE-eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence 67899999999997 33222 2223333333322 2244556789999999999998873 1499999853 21
Q ss_pred ee---------ec--cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 141 ET---------VN--VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 141 ~~---------~~--~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.. .. ..+......+....|.|.+++.+|+|.|.|.|.|..+
T Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 137 (254)
T 2c1o_A 86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFP 137 (254)
T ss_dssp CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSS
T ss_pred ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcc
Confidence 11 00 1223333345566799999999999999999999765
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-14 Score=84.91 Aligned_cols=88 Identities=8% Similarity=-0.036 Sum_probs=60.8
Q ss_pred CCCceeeeeeCCcEEEEEEeccC---CCCceEEEEEcCce-eeec-cceeEEee--cC----ceEEEEEecCCCCCCeEE
Q psy10918 104 HQQRVLGVARQEKVNISCEVDAN---PPDVKFSWTFNNSA-ETVN-VAQAHILR--SG----TLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 104 ~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~~~~-~~~~-~~~~~~~~--~~----~~~~l~i~~~~~~~~g~y 172 (207)
..+....+.+|+.+.|.|.+.+. |.| .|.|+|+... +... .....+.. .. ....|.|.++...|+|.|
T Consensus 17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 95 (118)
T 2edn_A 17 KKPDSVSVETGKDAVVVAKVNGKELPDKP-TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYY 95 (118)
T ss_dssp BCCCCCEEETTSCEECCEEEETTTSSSCC-CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCE
T ss_pred ECCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEE
Confidence 34566678899999999999875 566 9999996411 1100 01111111 11 146799999999999999
Q ss_pred EEEEecCCCCCccceEEEEe
Q psy10918 173 ICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|.|.|..|..+..+.|.|.
T Consensus 96 ~Cevsn~~g~~s~~~~L~V~ 115 (118)
T 2edn_A 96 RLEVKAKDTCDSCGFNIDVE 115 (118)
T ss_dssp EEEEECSSCEEEEEECCEEE
T ss_pred EEEEEEcCCcEEEEEEEEEE
Confidence 99999999977656555554
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-14 Score=81.83 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=58.5
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.+.|.|.+.+.|.+ .+.|++++..+... ....|.|.+++.+|+|.|+|.|.|..+....+..+
T Consensus 21 ~v~~G~~v~l~C~~~g~p~~-~v~W~k~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~ 89 (96)
T 2ens_A 21 AVAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLPLP----------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89 (96)
T ss_dssp EECTTCEEEEECCCSSCSSC-CCCCEESSSBCSSC----------CCSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred EEcCCCeEEEEEEEccCCCC-EEEEEECCEECcCC----------CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 46789999999999998887 99999988764321 23468999999999999999999976655455555
Q ss_pred EEeecc
Q psy10918 190 HIVSAV 195 (207)
Q Consensus 190 ~v~~~~ 195 (207)
.|.+.+
T Consensus 90 ~v~V~~ 95 (96)
T 2ens_A 90 SISIIE 95 (96)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 555543
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=79.41 Aligned_cols=83 Identities=17% Similarity=0.351 Sum_probs=61.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+....+.+|+++.|.|.+ +.+.+ .+.|++++..+.......+...+ ..|.|.+++..|+|.|.|.+.
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ag---- 83 (95)
T 2k1m_A 10 AFSKKPRSVEVAAGSPAVFEAET-ERAGV-KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAG---- 83 (95)
T ss_dssp CCSBCCCCEEEETTSCEEEEEEC-SSSSC-CCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEET----
T ss_pred eeEeCCCcEEEeCCCcEEEEEEe-CCCCC-eEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEEC----
Confidence 44555677889999999999999 66666 89999999888764433333333 369999999999999999993
Q ss_pred CCccceEEEEEE
Q psy10918 85 DGESNAFFLNVM 96 (207)
Q Consensus 85 ~~~~~~~~l~v~ 96 (207)
.. ...+.|.|.
T Consensus 84 ~~-~~~~~l~V~ 94 (95)
T 2k1m_A 84 SS-KVKFDLKVI 94 (95)
T ss_dssp TE-EEEEEEEEE
T ss_pred Cc-eEEEEEEEe
Confidence 22 334556654
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=77.40 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=54.1
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
+..|+.+.|.|.+.+ |.+ .+.|+++|..+.. .....+..++....|.|.++..+|+|.|+|.|.|.
T Consensus 18 ~~~g~~v~l~C~v~~-p~~-~v~W~k~g~~i~~-~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 18 AITSECVMLACEVDR-EDA-PVRWYKDGQEVEE-SDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp CCTTCCEEEEEECSC-TTS-CCEEEETTSCCCC-CSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EECCCcEEEEEEECC-CCc-EEEEEECCEEeee-eeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence 457999999999865 666 8999999987653 33456666777788999999999999999999764
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-13 Score=80.17 Aligned_cols=85 Identities=20% Similarity=0.427 Sum_probs=63.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|+++.|.|.+.+. + .+.|++++..+.......+...+ ..|.|.+++.+|+|.|.|.+ +.
T Consensus 22 ~~~~~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~ 94 (113)
T 2edh_A 22 FTEGLRNEEATEGATAVLRCELSKM--A-PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GK 94 (113)
T ss_dssp EEECCCCCEECTTSCEEEEEEESSC--C-CCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TT
T ss_pred ccccCCceEEeCCCeEEEEEEECCC--C-cEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CC
Confidence 4445667788999999999999765 4 78999999988754333333333 26999999999999999999 22
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
. ...+.|.|..+|.
T Consensus 95 ~-~~~~~l~V~~~p~ 108 (113)
T 2edh_A 95 E-RTSAMLTVRAMPS 108 (113)
T ss_dssp E-EEEEEEEECCCCC
T ss_pred C-CEEEEEEEeCCCC
Confidence 2 4466788876664
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=85.40 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=65.6
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecCceEEEEEecCCCCCCeE
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~ 171 (207)
|.|..+|......+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.... ...+. ..+....|.|.++..+|+|.
T Consensus 7 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~l~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~ 84 (115)
T 2cr6_A 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHANE-LNEIDAQPGGYHVLTLRQLALKDSGT 84 (115)
T ss_dssp CCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCC-SCEEEESSCEECCSS-SCCBCCBTTTBCCBEECSCCTTTCEE
T ss_pred EEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCC-ccEEEECCEECCCCC-cEEEEEcCCCEEEEEEcCCChhhCEE
Confidence 4455444322233445567899999999999998887 999999988754322 12222 23455679999999999999
Q ss_pred EEEEEecCCCCCccceEEEEee
Q psy10918 172 LICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 172 y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
|+|.+ |....++.+.|..
T Consensus 85 Y~C~~----g~~~~~~~L~V~~ 102 (115)
T 2cr6_A 85 IYFEA----GDQRASAALRVTE 102 (115)
T ss_dssp EEEEE----TTEECCEEEEEEC
T ss_pred EEEEE----CCeeEEEEEEEEC
Confidence 99994 4455566666654
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=83.30 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=98.4
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC-CeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-QSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
.+....|..|+++.|+|.+.- +.+..+.|-. ++... ......+ ..|.|.+++ |+|.|.|.+.. .+.....
T Consensus 8 ~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet---~l~~~--~~~~g~~w~~l~l~~vs--~~g~~~C~~~c-~~~~~~~ 78 (192)
T 1zxq_A 8 RPKKLAVEPKGSLEVNCSTTC-NQPEVGGLET---SLNKI--LLDEQAQWKHYLVSNIS--HDTVLQCHFTC-SGKQESM 78 (192)
T ss_dssp ESSEEEECTTEEEEEEEEESC-SSCSEEEEEC---SSEEE--EEEEETTEEEEEEEEEC--SCEEEEEEEEE-TTEEEEE
T ss_pred eCCCcEEeCCCcEEEEEECCC-CCcccccccc---ccCce--EEcCCCCeEEEEEeccc--cCCeeEEEEEC-CCcceEE
Confidence 355677889999999999864 3342455542 22110 0000112 359999998 78999999873 3334456
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCC-ceEEEEEcCceeeeccceeEEeec-Cc-eEEEEEecCC
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPD-VKFSWTFNNSAETVNVAQAHILRS-GT-LSVVAYSPNS 165 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~~l~i~~~~ 165 (207)
.+.|+|+..|......+....+..|+.++|.|.+.+. |.. .++.|++++..+....-.. .... .. ...+.+. ..
T Consensus 79 ~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~-~~~~~~~~tv~~~~~-~~ 156 (192)
T 1zxq_A 79 NSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK-AAPAPQEATATFNST-AD 156 (192)
T ss_dssp EEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCS-STTCTTCEEEEEEEE-CC
T ss_pred EEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeeccccc-ccCcCcceEEEEEEe-cc
Confidence 7889999888765544322346799999999999975 432 3589999877654221000 0011 11 1233344 44
Q ss_pred CCCCe-EEEEEEecCC
Q psy10918 166 ELDYG-TLICWGSNKI 180 (207)
Q Consensus 166 ~~~~g-~y~C~~~n~~ 180 (207)
.+|.| .|+|.|.-.+
T Consensus 157 r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 157 REDGHRNFSCLAVLDL 172 (192)
T ss_dssp GGGGGCEEEEEEEEEC
T ss_pred hhhCCceEEEEEEecC
Confidence 55555 9999998666
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=80.70 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=63.9
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc-cccccc-----cCCeEe-----cCCeEEEEecCCCCCeeeEE
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK-TLHHNI-----AQGIIM-----TNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~-~~~~~~-----~~~~~~-----~~~~l~i~~~~~~d~g~Y~C 77 (207)
...+....+.+|++++|.|.+.+.+.+ .+.|++++. .+.... ..++.. ...+|.|.+++..|+|.|+|
T Consensus 10 ~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 88 (108)
T 3m45_A 10 FPLTQNVTVVEGGTAILTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTC 88 (108)
T ss_dssp CEECCCEEEETTSCEEEEEEESSCSSC-CEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEE
T ss_pred cccCCeeEEEeCCcEEEEeEEcCCCcc-EEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEE
Confidence 344667788999999999999988866 899999775 222111 112221 24579999999999999999
Q ss_pred EEeeeCCCCccceEEEEEEeCC
Q psy10918 78 VGFNIEGDGESNAFFLNVMYSP 99 (207)
Q Consensus 78 ~~~~~~~~~~~~~~~l~v~~~~ 99 (207)
.+.| .+.. ...+.|.|..+|
T Consensus 89 ~~~n-~~~~-~~~~~L~V~~~P 108 (108)
T 3m45_A 89 SLFT-MPVK-TSKAYLTVLGVP 108 (108)
T ss_dssp EECS-SSCE-EEEEEEEEECCC
T ss_pred EEEc-CCCc-EEEEEEEEEcCC
Confidence 9998 5544 556778877554
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=82.99 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=56.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc---eeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA---QAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
....+.+|+.+.|.|.+.+.| + .+.|++++..+..... +..+..++....|.|.++..+|+|.|+|.|.|
T Consensus 16 ~~~~v~~G~~v~l~C~~~~~~-~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 88 (101)
T 2edk_A 16 EDQQVFVGDRVEMAVEVSEEG-A-QVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG 88 (101)
T ss_dssp CCEEEESSCCCBCCEEESCSS-C-CCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred CceEEcCCCCEEEEEEEeCCC-C-EEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC
Confidence 345678999999999999877 5 9999999887543321 33555666777899999999999999999998
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=78.87 Aligned_cols=87 Identities=18% Similarity=0.303 Sum_probs=64.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+....+.+|+++.|.|.+ +.+.+ .+.|++++..+.......+...+. .|.|.+++..|+|.|+|. .+
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g 83 (103)
T 2dku_A 10 CFTEELTNLQVEEKGTAVFTCKT-EHPAA-TVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IG 83 (103)
T ss_dssp CCSSCCCCEEEETTSEEEEEEEC-SSCCS-CCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CS
T ss_pred EeEecCCcEEEeCCCcEEEEEEe-CCCCC-eEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eC
Confidence 34445677788999999999994 66766 899999998887644333322222 799999999999999998 33
Q ss_pred CCccceEEEEEEeCCc
Q psy10918 85 DGESNAFFLNVMYSPT 100 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~ 100 (207)
.. ...+.|.|...|.
T Consensus 84 ~~-~~~~~l~V~~~p~ 98 (103)
T 2dku_A 84 QA-QSRAQLLVQGRRS 98 (103)
T ss_dssp SC-BCCEEEEEECSCC
T ss_pred Cc-eEEEEEEEeCccC
Confidence 33 4467788886654
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-14 Score=82.86 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=59.4
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
...+.+|+++.|.|.+. .+.+ .+.|++++..+.......+...+ ..|.|.+++..|+|.|+|.+.+. ...+
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~-----~~~~ 92 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQT-EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ-----QLSF 92 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSS-CCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTE-----ECCE
T ss_pred cEEEeCCCcEEEEEEec-CCCC-ceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC-----cEEE
Confidence 34678999999999998 6666 89999999988764433333333 47999999999999999998643 3356
Q ss_pred EEEEEeCC
Q psy10918 92 FLNVMYSP 99 (207)
Q Consensus 92 ~l~v~~~~ 99 (207)
.|.|..++
T Consensus 93 ~l~V~~p~ 100 (102)
T 2eo1_A 93 RLQVAGQC 100 (102)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 77777543
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=77.04 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=57.8
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+..|+.+.|.|.+. .|.+ .+.|++++..+... ....+..++....|.|.++..+|+|.|+|.| |....++.
T Consensus 18 ~~v~~G~~v~l~C~~~-~p~~-~v~W~k~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~ 90 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELA-DPKL-EVKWYKNGQEIRPS-TKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTE 90 (100)
T ss_dssp EEECTTEEEEEEEEES-CTTS-CEEEEESSCBCCCB-TTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEE
T ss_pred cEEcCCCcEEEEEEec-CCCc-eEEEEECCEECCCC-CCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEE
Confidence 3567899999999998 6766 99999998775432 2445556666778999999999999999999 44444444
Q ss_pred EEEe
Q psy10918 189 FHIV 192 (207)
Q Consensus 189 ~~v~ 192 (207)
+.|.
T Consensus 91 l~V~ 94 (100)
T 2yuv_A 91 LFVR 94 (100)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4433
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=79.75 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=63.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|+++.|.|.+.+.+.+ +.|++++..+.......+...+. .|.|.+++.+|+|.|.|.+ +.
T Consensus 11 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~--v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~ 84 (103)
T 2e7b_A 11 FQEALKDLEVLEGGAATLRCVLSSVAAP--VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GD 84 (103)
T ss_dssp CTBCCCCEEEESSSCEEEEEECSSCCCS--CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEEC----SS
T ss_pred EEecCccEEEECCCcEEEEEEEeCCCCC--eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEEE----CC
Confidence 3345667788999999999999888765 99999998886543333333322 5999999999999999983 32
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
. ...+.|.|..+|.
T Consensus 85 ~-~~~~~l~V~~~p~ 98 (103)
T 2e7b_A 85 Q-TTSATLTVTALPS 98 (103)
T ss_dssp C-BCCBCEEEECCCC
T ss_pred c-EEEEEEEEEeccc
Confidence 2 3455678876664
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=79.41 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=62.4
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.+.| + .+.|++++..+.... ...+. ...|.|.++..+|+|.|+|.|.|..|... .
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p-p-~i~W~k~g~~~~~~~-~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~--~ 82 (99)
T 2cr3_A 12 SFLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLAESN-RTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDT--T 82 (99)
T ss_dssp ECCBCTTSCEEEECCCCSSC-C-EEEEEESSSBCCCCS-SEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEE--E
T ss_pred CeEEeCCCcEEEEEEecCCC-C-eEEEEECCEECCCCC-cEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEE--E
Confidence 34567899999999999875 5 999999987653221 22222 23699999999999999999999988764 4
Q ss_pred EEEEeecccCCCCC
Q psy10918 188 VFHIVSAVTFHPPF 201 (207)
Q Consensus 188 ~~~v~~~~~~~~p~ 201 (207)
.+.|.+.+.|..+.
T Consensus 83 ~~~l~V~~~~~s~~ 96 (99)
T 2cr3_A 83 YFSVNVSDALPSGP 96 (99)
T ss_dssp EEEECBCSCCSCCC
T ss_pred EEEEEEecCCCCcc
Confidence 45566666555544
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-12 Score=75.03 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+....+.+|+.+.|.|.. +.|.+ .+.|++++..+... .+..+..++....|.|.+++.+|+|.|+|. .|...
T Consensus 14 ~~~~~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~ 86 (103)
T 2dku_A 14 ELTNLQVEEKGTAVFTCKT-EHPAA-TVTWRKGLLELRAS-GKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQ 86 (103)
T ss_dssp CCCCEEEETTSEEEEEEEC-SSCCS-CCEEEESSCBCCSS-SSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCB
T ss_pred cCCcEEEeCCCcEEEEEEe-CCCCC-eEEEEeCCEECCCC-CeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCce
Confidence 3445567899999999994 77776 99999998775432 234455566667899999999999999998 55555
Q ss_pred cceEEEEeecccCCCCC
Q psy10918 185 VPCVFHIVSAVTFHPPF 201 (207)
Q Consensus 185 ~~~~~~v~~~~~~~~p~ 201 (207)
..+.+. +.+.|.+|.
T Consensus 87 ~~~~l~--V~~~p~~p~ 101 (103)
T 2dku_A 87 SRAQLL--VQGRRSGPS 101 (103)
T ss_dssp CCEEEE--EECSCCCCS
T ss_pred EEEEEE--EeCccCCCC
Confidence 555554 446666664
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=80.31 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=59.3
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEcCceeee----ccceeEEeec---CceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFNNSAETV----NVAQAHILRS---GTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~----~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+.+|+.+.|.|.+.+.|. ++.+.|++++..... .......... ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 19 ~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 98 (122)
T 3s35_X 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 98 (122)
T ss_dssp EEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred EEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCC
Confidence 5678999999999998543 248999998874321 0111111111 1345699999999999999999999999
Q ss_pred CCccceEEEEee
Q psy10918 182 HQRVPCVFHIVS 193 (207)
Q Consensus 182 ~~~~~~~~~v~~ 193 (207)
.....+.+.|..
T Consensus 99 ~~~~~~~l~V~~ 110 (122)
T 3s35_X 99 TKKNSTFVRVHE 110 (122)
T ss_dssp EEEEEEEEEEEE
T ss_pred ceEEEEEEEEec
Confidence 877666665553
|
| >3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=86.90 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=96.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc----cc------ccCCeEec------CCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH----HN------IAQGIIMT------NQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~----~~------~~~~~~~~------~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|...+.... .+.||+. +.... .. ...++... ..+|+|.+++.
T Consensus 3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~ 81 (200)
T 3rgv_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYP-TLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQE 81 (200)
T ss_dssp EECCCSEEEEETTCCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS
T ss_pred cEECCCEEEEeCCCCEEEEEEecCCCCc-EEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcC
Confidence 4455667788999999999998765444 8999984 22111 00 01122211 23599999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeee-eeCCcEEEEEEeccCCCCceEEEEEcCceeeecccee
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGV-ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQA 148 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~ 148 (207)
+|+|.|+|.+........-....|.|...... ..+..... .....++|.|.+.+..+...+.|.++|..+.......
T Consensus 82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~~t~~ 159 (200)
T 3rgv_A 82 IDSAVYYCAANSGTYQRFGTGTKLQVVPNIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVL 159 (200)
T ss_dssp TTCEEEEEEEESSSCCCCCCCEEEEEECCCSS--CCCEEEEEEESSSSSCEEEEEESCCTTCCCCCCSSTTCEECCCEEE
T ss_pred ccCCCEEEEeccCcccccCcCEEEEEeCCCCC--CCCeEEEccCCCCCceEEEEcccccCCeEeEeccCCcEEeecceEE
Confidence 99999999986421112223446777743111 11211111 1223478999999976688999999887654332222
Q ss_pred EEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 149 HILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 149 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.....+..+.. .+.+.+.+.|.|.+.
T Consensus 160 ~~~~~~~~~~~---~~~w~~~~~~~c~~~ 185 (200)
T 3rgv_A 160 DMRSMDFKSNS---AVAWSNKSDFACANA 185 (200)
T ss_dssp EEGGGTEEEEE---EEEECSCSSCCTTTT
T ss_pred ccccccccccc---eEEecCCCceEeeee
Confidence 23333333322 234455566777654
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=77.87 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=57.7
Q ss_pred ceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+..|+.+.|.|.+. +.|.+ .+.|++++...... ......+ .|.|.+++.+|+|.|.|.|.|..|....
T Consensus 18 ~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~~~~~~~~---~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~ 90 (98)
T 1gl4_B 18 RSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNGKLPS---RAMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQG 90 (98)
T ss_dssp CEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGBCCCT---TEEEETT---EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred CCeEEecCCCEEEEEeCCCCCCCc-EEEEEeCCCCCCCc---eeecCCC---EEEEeCCChhhCEEEEEEecCCCCcccc
Confidence 344577999999999998 56776 99999975432211 1122222 5999999999999999999999988766
Q ss_pred ceEEEE
Q psy10918 186 PCVFHI 191 (207)
Q Consensus 186 ~~~~~v 191 (207)
.+.+.|
T Consensus 91 ~~~l~V 96 (98)
T 1gl4_B 91 TATLHV 96 (98)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655544
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=81.18 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=63.0
Q ss_pred eeecCCCcccCCCcEEEEeEeccC--CCCcEEEEEECCccccccccC---CeE-------ecCCeEEEEecCCCCCeeeE
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNKTLHHNIAQ---GII-------MTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~~~~~---~~~-------~~~~~l~i~~~~~~d~g~Y~ 76 (207)
...+....+.+|++++|.|.+.+. +.+ .+.|++++..+...... ... .....|.|.+++..|+|.|.
T Consensus 14 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 92 (112)
T 3so5_A 14 TVQPETQSAIXGSDVSFTCSAASSSDSPM-TFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQ 92 (112)
T ss_dssp EECCCCEEECTTCCEEEEEEEEESCCCCC-EEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEE
T ss_pred EeCCCCcEEECCCCEEEEEEEecCCCCCE-EEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEE
Confidence 344566678899999999999854 344 89999999887653210 110 11357999999999999999
Q ss_pred EEEeeeCCCCccceEEEEE
Q psy10918 77 CVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 77 C~~~~~~~~~~~~~~~l~v 95 (207)
|.+.|..|...+..+.|.|
T Consensus 93 C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 93 CVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEETTEEEECCCEEEEE
T ss_pred EEEEeCCCcEEEeEEEEEe
Confidence 9999988764455666665
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=84.20 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=62.3
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc-------cccCCeEe----cCCeEEEEecCCCCCeeeEEEE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-------NIAQGIIM----TNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-------~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
.+....+.+|++++|.|.+.+.+.+ .+.|++++..+.. ........ ...+|.|.+++.+|+|.|+|.+
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 85 (124)
T 3rbg_A 7 HTETITVEEGQTLTLKCVTSLRKNS-SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH 85 (124)
T ss_dssp SEEEEEEETTSCEEEEEECCCCTTC-EEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCccEEEcCCCCEEEEeEEeccCCC-EEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEE
Confidence 3455678899999999999988877 9999986654221 11111111 1357999999999999999999
Q ss_pred eeeCCCCccceEEEEEEeCCc
Q psy10918 80 FNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v~~~~~ 100 (207)
.|. +.. ...+.|.|..+|.
T Consensus 86 ~n~-g~~-~~~~~l~V~~~P~ 104 (124)
T 3rbg_A 86 YSD-SVS-TKEVKVIVLATMK 104 (124)
T ss_dssp ESS-SEE-EEEEEEEEECC--
T ss_pred EcC-CCC-cEEEEEEEEeCCC
Confidence 987 544 5577888887765
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=77.34 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=56.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc-cce
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR-VPC 187 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~ 187 (207)
..+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....|.|.++..+|+|.|+|.|.|..|... ..+
T Consensus 13 ~~v~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~ 81 (91)
T 3bfo_A 13 QKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTH----------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKV 81 (91)
T ss_dssp EEECTTSCEEEECEEECSSCC-EEEEEETTEECTT----------CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCE
T ss_pred cEecCCCcEEEEEEeccCCCC-EEEEEcCCeeCCc----------CCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeE
Confidence 346789999999999999987 9999998876432 1223689999999999999999999998643 333
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 82 ~l~V 85 (91)
T 3bfo_A 82 EIII 85 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=90.62 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=66.3
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+.+|+++.|.|.+.+.+ + .+.|++++..+...........+.+|.|.+++..|.|.|+|.+.|..|...+..+.|.|.
T Consensus 122 ~~~g~~v~l~C~~~~~p-p-~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~ 199 (208)
T 3r4d_A 122 VKELDSVTLTCLSNDIG-A-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199 (208)
T ss_dssp CCTTCCEEEEEECSCTT-C-EEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred EeeCCCEEEEEECCCCC-C-ceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence 78899999999998866 5 999999998887544333334457899999999999999999999999988888888887
Q ss_pred eCCc
Q psy10918 97 YSPT 100 (207)
Q Consensus 97 ~~~~ 100 (207)
.++.
T Consensus 200 ~~~~ 203 (208)
T 3r4d_A 200 FDPH 203 (208)
T ss_dssp ----
T ss_pred eCCc
Confidence 6654
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=76.54 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=60.1
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCc-eeeecc------ceeEEe-ecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNS-AETVNV------AQAHIL-RSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~-~~~~~~------~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
+....+.+|+.+.|.|.+.+.+.+ .+.|++++. .+.... .+..+. .......|.|.+++.+|+|.|+|.|.
T Consensus 13 ~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 91 (108)
T 3m45_A 13 TQNVTVVEGGTAILTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLF 91 (108)
T ss_dssp CCCEEEETTSCEEEEEEESSCSSC-CEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEEC
T ss_pred CCeeEEEeCCcEEEEeEEcCCCcc-EEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEE
Confidence 344567899999999999998876 999998775 221111 122221 22245679999999999999999999
Q ss_pred cCCCCCccceEEEEe
Q psy10918 178 NKIGHQRVPCVFHIV 192 (207)
Q Consensus 178 n~~g~~~~~~~~~v~ 192 (207)
| .+..+..+.+.|.
T Consensus 92 n-~~~~~~~~~L~V~ 105 (108)
T 3m45_A 92 T-MPVKTSKAYLTVL 105 (108)
T ss_dssp S-SSCEEEEEEEEEE
T ss_pred c-CCCcEEEEEEEEE
Confidence 9 7766555555444
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=89.34 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=69.7
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..... .....++.|.|.+++..|+|.|+|.+.|..|...+..
T Consensus 116 ~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~ 193 (212)
T 2yd1_A 116 GPGTRVIEVGHTVLMTCKAIGNPTP-NIYWIKNQTKVDMSNP-RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKA 193 (212)
T ss_dssp CCCCEEEETTCCEEECCEEECSSCC-EEEEEETTEECCTTST-TEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred CCCceEeecCCeEEEEEEeccCCCC-eEEEEECCeEcccCCC-eEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEE
Confidence 3455667789999999999998887 8999999988875332 3345567999999999999999999999988775655
Q ss_pred EEEEEEeCC
Q psy10918 91 FFLNVMYSP 99 (207)
Q Consensus 91 ~~l~v~~~~ 99 (207)
+.|.|....
T Consensus 194 ~~l~V~~~~ 202 (212)
T 2yd1_A 194 TNLYVKVRR 202 (212)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEecc
Confidence 788888654
|
| >1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-12 Score=96.80 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=99.1
Q ss_pred ccCCCcEEEEeEeccCCCC---cEEEEEECCccccccccC-------CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDIVAVPPV---YKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~---~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+..+....|.|.+.+..+. .+|+|++++..+...... ......+.|.|......|.+.|+|.+.+.....
T Consensus 355 ~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~ 434 (551)
T 1ntl_A 355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 434 (551)
T ss_pred eeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCC
Confidence 5567888999999775442 489999998776432111 111112347777777778899999998765422
Q ss_pred -ccceEEEEE--EeCCcccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE--eecCce---E
Q psy10918 87 -ESNAFFLNV--MYSPTCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI--LRSGTL---S 157 (207)
Q Consensus 87 -~~~~~~l~v--~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~---~ 157 (207)
....+.+.+ ..+|.+....+.. ....|+.+.|.|.+.+. |+.+.|.|+++|..+. ....... ..+++. +
T Consensus 435 ~~~~~~~~~~~~~~~P~V~~~~~~~-~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~-~~~~~~~~~~~dgty~~~s 512 (551)
T 1ntl_A 435 PIEKTISKTKGRPKAPQLYTIPPPK-EQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE-NYKNTQPIMNTNGSYFVYS 512 (551)
T ss_pred CeEEEEecCCCCCcCCceEEeCCCh-hhccCCceEEEEEEEEeECCCCEEEEEECCEEcc-CceeccceeCCCCCEEEEE
Confidence 122222222 2344432222211 23467899999999995 5557999999988753 1111112 223332 2
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.|.+......+.+.|+|.|.+....
T Consensus 513 ~l~v~~~~~~~~~~ytC~V~h~~l~ 537 (551)
T 1ntl_A 513 KLNVQKSNWEAGNTFTCSVLHEGLH 537 (551)
T ss_pred EEEEcHHHcCCCCeEEEEEEECCCC
Confidence 3555555555688999999986543
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=88.58 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=68.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|+++.|.|.+.+.+.+ .+.|++++..+.... ......++.|.|.+++..|+|.|+|.+.|..|...+..+
T Consensus 107 ~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 184 (192)
T 2iep_A 107 PINVKIIEGLKAVLPCTTMGNPKP-SVSWIKGDSALRENS-RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184 (192)
T ss_dssp CCCEEEETTSCEEECCEEEEESCC-EEEEEETTEECCCCS-SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CcceEEeCCCcEEEEEEEeccCCc-eEEEEeCCEEccCCC-cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEE
Confidence 445677899999999999988887 999999998877543 223344568999999999999999999999887766678
Q ss_pred EEEEEeCC
Q psy10918 92 FLNVMYSP 99 (207)
Q Consensus 92 ~l~v~~~~ 99 (207)
.|.|..+|
T Consensus 185 ~l~V~~pp 192 (192)
T 2iep_A 185 KLEVEVFA 192 (192)
T ss_dssp EEEEEC--
T ss_pred EEEEEeCC
Confidence 88887654
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=78.83 Aligned_cols=86 Identities=20% Similarity=0.368 Sum_probs=63.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|++++|.|.+.+. + .+.|++++..+.......+...+. .|.|.+++.+|+|.|+|.+.|.
T Consensus 11 ~~~~~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--- 84 (108)
T 2dm7_A 11 FTQDLKTKEASEGATATLQCELSKV--A-PVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE--- 84 (108)
T ss_dssp BCSCCBCCEEETTSCEEEEEEBSSS--C-CCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETTE---
T ss_pred eeecCCcEEEeCCCcEEEEEEeCCC--C-eeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcCC---
Confidence 3344567788999999999998765 4 789999998887543333332332 4999999999999999999542
Q ss_pred CccceEEEEEEeCCcc
Q psy10918 86 GESNAFFLNVMYSPTC 101 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~ 101 (207)
.....|.|..+|..
T Consensus 85 --~~~~~l~V~~~p~~ 98 (108)
T 2dm7_A 85 --RTSATLTVRALPAR 98 (108)
T ss_dssp --EEEEECEEECCCSS
T ss_pred --EEEEEEEEecCCHH
Confidence 44667788865543
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=75.17 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=59.1
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+ +.|.+ .+.|++++..+... ....+...+....|.|.+++.+|+|.|+|.| |....
T Consensus 15 ~~~~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~ 87 (95)
T 2k1m_A 15 PRSVEVAAGSPAVFEAET-ERAGV-KVRWQRGGSDISAS-NKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKV 87 (95)
T ss_dssp CCCEEEETTSCEEEEEEC-SSSSC-CCEEECSSSEECSS-TTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEE
T ss_pred CCcEEEeCCCcEEEEEEe-CCCCC-eEEEEECCEECCCC-CcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceE
Confidence 344567899999999999 66666 99999998875432 2344555666678999999999999999999 34444
Q ss_pred ceEEEE
Q psy10918 186 PCVFHI 191 (207)
Q Consensus 186 ~~~~~v 191 (207)
++.+.|
T Consensus 88 ~~~l~V 93 (95)
T 2k1m_A 88 KFDLKV 93 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555544
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=92.63 Aligned_cols=77 Identities=12% Similarity=0.309 Sum_probs=59.8
Q ss_pred CcccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
..+.+|+++.|.|.+.+. |.+ .++|+|++.++.............+|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus 126 ~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L 203 (207)
T 3rbs_A 126 WEVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKL 203 (207)
T ss_dssp EEEETTTEEEEEEEEESCCTTC-EEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred cEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEE-EEEEEE
Confidence 567889999999999998 777 99999999988764322211222469999999999999999999988866 334444
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=89.76 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=66.7
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc-CCeE-e---cCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-QGII-M---TNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~-~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... ..+. . ....|.|.+++.+|.|.|+|.+.|..|.
T Consensus 114 ~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 192 (212)
T 2yd6_A 114 GPQLKVVERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192 (212)
T ss_dssp CCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCcceeEecCCCEEEEEEecCCCCC-eEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCc
Confidence 3455667889999999999999887 9999999988865321 1111 1 1367999999999999999999999998
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
..+..+.|.|..++.
T Consensus 193 ~~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 193 RYSAPANLYVRGTKH 207 (212)
T ss_dssp EECCCEEEEEEC---
T ss_pred cccccccEEEEeccc
Confidence 877788888886553
|
| >2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=79.60 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=60.4
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
|...|... +.. .+.+|++|+|.|.+.+.+ . .+.|++++..+.... ......+..|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~kP~i~~~--p~~-~v~~G~~VtL~C~~~~~~-~-~~~w~k~g~~~~~~~-~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n 77 (105)
T 2vsd_A 4 PQPSLSLH--PSQ-GVSLGDTVTLRCHLPRMA-A-WVQLWLNGTLRFDKE-KDKEQDAAEFSFAVTNLEDAGTYQCRYQV 77 (105)
T ss_dssp CCCEEEEE--SCS-SCCTTCEEEEEEECCSSC-E-EEEEEETTEEEEEEE-ECTTCSEEEEEEECCSGGGCEEEEEEEEE
T ss_pred CCCEEEeC--CCC-CcCcCCCEEEEEEcCCCC-c-EEEEEECCccceeee-ccCCCCEEEEEECCCCHHHCeEEEEEEEc
Confidence 45555533 333 688999999999987653 3 899999987653211 01112235699999999999999999998
Q ss_pred eC---CCCccceEEEEEE
Q psy10918 82 IE---GDGESNAFFLNVM 96 (207)
Q Consensus 82 ~~---~~~~~~~~~l~v~ 96 (207)
.. ....+..+.|.|.
T Consensus 78 ~~~~~~s~~Sdpl~L~V~ 95 (105)
T 2vsd_A 78 SEPLWTSNQSDPVELVLT 95 (105)
T ss_dssp ETTEEECCCCCCEEECCC
T ss_pred CCCCcccCCCCCEEEEEE
Confidence 64 2344556666554
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=77.88 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=53.7
Q ss_pred eecCC-CcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc-ccCCeEecCC--eEEEEecCCCCCeeeEEEEee
Q psy10918 10 RSLNP-DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-IAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 10 ~~~~~-~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
..+.. ..+.+|+++.|.|.+ +.+.+ .+.|++++..+... ....+...+. .|.|.+++.+|+|.|.|.+.+
T Consensus 20 ~~~~~~~~v~~G~~v~L~C~~-~~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 93 (104)
T 1pd6_A 20 KKLEPAYQVSKGHKIRLTVEL-ADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93 (104)
T ss_dssp EECCSEEEEETTSCEEEEEEC-SSSSS-CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred EcCCCcEEEecCCCEEEEEEE-cCCCC-EEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence 33444 678899999999999 66666 89999999988764 2222322332 799999999999999999953
|
| >2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=87.32 Aligned_cols=161 Identities=12% Similarity=0.120 Sum_probs=96.8
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cc---c-c-cc-----ccCCeEec------CCeEEEEecC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KT---L-H-HN-----IAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~---~-~-~~-----~~~~~~~~------~~~l~i~~~~ 68 (207)
.+.+.+....+.+|++++|.|.+.+.... .+.||+.. .. + . .. ...++... ..+|+|.+++
T Consensus 5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~ 83 (210)
T 2eys_A 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFS-NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ 83 (210)
T ss_dssp CEEEECSEEEEETTCCEEEEEEECCSSCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred eEEEeCCEEEEecCCCEEEEEEECCCCCC-eEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCC
Confidence 34555677788999999999999776555 89999843 11 1 1 01 01122211 1369999999
Q ss_pred CCCCeeeEEEEeeeC---CC-CccceEEEEEEeCCcccCCCCceeeee-eCCcEEEEEEeccCCCCceEEEEEcCceeee
Q psy10918 69 RQSAGNYTCVGFNIE---GD-GESNAFFLNVMYSPTCKPHQQRVLGVA-RQEKVNISCEVDANPPDVKFSWTFNNSAETV 143 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~---~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~ 143 (207)
.+|+|.|+|.+.+.. +. .......|.|...... ..+...... ....++|.|.+.+.++++.+.+...+.
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v~~~~~~~---- 157 (210)
T 2eys_A 84 LSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSD---- 157 (210)
T ss_dssp GGGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSS--CCCEEEEECCCSSSSCEEEEEESCCTTCCCCCCSSTT----
T ss_pred cccCceEEEEEEccCCCcccceECCCEEEEEECCCCC--CCCeEEecCCCCCCceEEEEcccccCCcEeccccCcc----
Confidence 999999999997632 11 1112345777643210 111111111 123789999999987765542211111
Q ss_pred ccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 144 NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 144 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.... ....|.+..+...+.|.|.|.+.|.++
T Consensus 158 -----~~~t--~~~~l~~~~~~~~~~~~~~w~~~~~~~ 188 (210)
T 2eys_A 158 -----VYIT--DKCVLDMRSMDFKSNSAVAWSNKSDFA 188 (210)
T ss_dssp -----EEEC--CCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred -----eEcc--CchhcchhcccccccchhhccCCCceE
Confidence 1111 223577778888899999999998764
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-12 Score=89.82 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=100.1
Q ss_pred ecCCCcccCCCcEEEEeEecc-------CCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEee
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVA-------VPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~-------~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+.+..+..|++++|.|.+.+ .+.+ .+.|++++..+.... .....+ +.|.|.++... .|.|.|.+.+
T Consensus 10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p-~i~W~~~g~~i~~~~--~~~~~~~~~~L~i~~~~~~-~g~Y~C~a~~ 85 (303)
T 1i1r_A 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPKEQ--YTIINRTASSVTFTDIASL-NIQLTCNILT 85 (303)
T ss_dssp ESSSCEEETTCCEEEEEEECHHHHHHHTCCGG-GEEEEETTEECCGGG--CEEEETTEEEEEECSCCCS-EEEEEEEEEE
T ss_pred ccCCceEeCCCCEEEEEEECCccccccCCChh-heEEEECCEECChhh--eeeeCCcEEEEEEcCcCCC-ceEEEEeccc
Confidence 356677899999999999985 3555 899999998886432 122222 46999999887 4999999975
Q ss_pred eCCCCcc--ceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeE----------
Q psy10918 82 IEGDGES--NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH---------- 149 (207)
Q Consensus 82 ~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~---------- 149 (207)
.|.... ..+.+.+..+|. ....|.|...+... ..+.|...........-...
T Consensus 86 -~g~~~~~~~~~~l~v~~~P~--------------~P~~l~~~~~~~~~-v~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~ 149 (303)
T 1i1r_A 86 -FGQLEQNVYGITIISGLPPE--------------KPKNLSCIVNEGKK-MRCEWDGGRETHLETNFTLKSEWATHKFAD 149 (303)
T ss_dssp -TTTEEEEEEEEEEEEECCCC--------------CCEEEEEEEETTSC-CEEEEECCSCCSSCCEEEEEEEETTEECCC
T ss_pred -CCCcceEEEEEEEeccCCCC--------------CCeeeEEEECCCCc-EEEEccCCCCCCCCcCEEEEEEecCCCCcc
Confidence 332211 123333433332 23345555544333 36666542111000000000
Q ss_pred -EeecCceEEEEEecC-CCCCCeEEEEEEecCCCCCcc-ceEEEEeecccCCCCCCcee
Q psy10918 150 -ILRSGTLSVVAYSPN-SELDYGTLICWGSNKIGHQRV-PCVFHIVSAVTFHPPFNQKL 205 (207)
Q Consensus 150 -~~~~~~~~~l~i~~~-~~~~~g~y~C~~~n~~g~~~~-~~~~~v~~~~~~~~p~~~~~ 205 (207)
.........+.+.++ .....-.|++.|.|..|.... ...+......+|+||.++++
T Consensus 150 ~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v 208 (303)
T 1i1r_A 150 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSV 208 (303)
T ss_dssp EECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEE
T ss_pred CCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEE
Confidence 001112234566666 556666788999999986532 22222223357888887765
|
| >4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-11 Score=80.07 Aligned_cols=173 Identities=10% Similarity=0.113 Sum_probs=100.1
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc----c------cccCCeEec----CCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH----H------NIAQGIIMT----NQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~----~------~~~~~~~~~----~~~l~i~~~~~ 69 (207)
|.+.+.+....+..|+.++|.|.+...-.. .+.||+. |+... . ....++.-. ..+|+|.+++.
T Consensus 2 ivlTQsP~sls~s~G~~vtisC~~S~~i~~-y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~ 80 (259)
T 4f9l_D 2 IVLTQSPSSLSASLGDTITITCHASQNINL-WLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQP 80 (259)
T ss_dssp CCEEEECSBCCBCTTCEEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCG
T ss_pred CCEEccCCeEEECCCCCEEEEEEcCCCCCC-CEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccCh
Confidence 446677778888999999999987554333 5889873 22111 0 011122211 12599999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEEeC---Ccc------------------cCCCCceeeeeeCCcEEEEEEeccCCC
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYS---PTC------------------KPHQQRVLGVARQEKVNISCEVDANPP 128 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~ 128 (207)
+|++.|+|...+......-...+|.++.. |.. ...+.....+.+|.++.|.|.+.|..-
T Consensus 81 eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tf 160 (259)
T 4f9l_D 81 EDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTF 160 (259)
T ss_dssp GGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCG
T ss_pred hhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCc
Confidence 99999999865432111111112333211 100 000111223668999999999998642
Q ss_pred -CceEEEEEc--Cceeeec------c----------ceeEEeec--CceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 129 -DVKFSWTFN--NSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 129 -~~~~~W~~~--~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
...+.|.+. |+.++.- . .+..+..+ .+...|.+.+++.+|.+.|.|.....
T Consensus 161 s~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~~~ 232 (259)
T 4f9l_D 161 TRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSREDD 232 (259)
T ss_dssp GGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred ccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEeCC
Confidence 236788873 3333210 0 11233333 23456889999999999999976543
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=77.51 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=57.8
Q ss_pred eeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccce--eEEeecC-----ceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 108 VLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQ--AHILRSG-----TLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~--~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
...+..|+.+.|.|.+.+.+. ++.+.|++++..+...... .++.... ....|.|.++..+|+|.|+|.|.|.
T Consensus 19 ~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 98 (112)
T 3so5_A 19 TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNH 98 (112)
T ss_dssp CEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeC
Confidence 345678999999999996542 2499999998764321110 1111110 1357999999999999999999999
Q ss_pred CCC-CccceEEEE
Q psy10918 180 IGH-QRVPCVFHI 191 (207)
Q Consensus 180 ~g~-~~~~~~~~v 191 (207)
.|. .+..+.+.|
T Consensus 99 ~g~~~s~~~~l~V 111 (112)
T 3so5_A 99 FGSSYSVXAXLTI 111 (112)
T ss_dssp TEEEECCCEEEEE
T ss_pred CCcEEEeEEEEEe
Confidence 987 445555543
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=89.50 Aligned_cols=88 Identities=22% Similarity=0.446 Sum_probs=68.8
Q ss_pred CCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 13 NPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+.... ......++.|.|.+++.+|.|.|+|.+.|..|...+..+
T Consensus 119 ~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~l~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~ 196 (212)
T 2v9r_A 119 SDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDKD-ERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVA 196 (212)
T ss_dssp CCEEEETTSCEEEECBCCCEESCC-EEEEEETTEEECTTS-TTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CceEecCCCcEEEEEecCCCCCCC-EEEEEECCccCCCCc-ceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceE
Confidence 34567889999999998 788877 999999999887543 344456778999999999999999999998887655568
Q ss_pred EEEEEeCCccc
Q psy10918 92 FLNVMYSPTCK 102 (207)
Q Consensus 92 ~l~v~~~~~~~ 102 (207)
.|.|..+|.+.
T Consensus 197 ~l~V~~~P~~~ 207 (212)
T 2v9r_A 197 ELTVLERPSFV 207 (212)
T ss_dssp EEEEEC-----
T ss_pred EEEEEeCchHh
Confidence 89998877654
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=81.90 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=59.9
Q ss_pred CcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe------cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM------TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
....|.|.+.|.|.+ .+.|++++..+.......... ..+.|.|.+++..|+|.|.|.+.|..|.. ...+.|.
T Consensus 21 ~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~ 98 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGH 98 (118)
T ss_dssp CEEEEEEEEECSSCC-EEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEEC
T ss_pred cceEEEEEeeeeCCC-eEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeE-eeEEEEE
Confidence 557889999999988 999999999887643222221 34579999999999999999999988866 4466666
Q ss_pred EEeCCc
Q psy10918 95 VMYSPT 100 (207)
Q Consensus 95 v~~~~~ 100 (207)
|...|.
T Consensus 99 v~~~P~ 104 (118)
T 1wwc_A 99 FLKEPF 104 (118)
T ss_dssp CSCCCC
T ss_pred EccCCC
Confidence 665553
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=73.70 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=61.2
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.+.|.|.+.+.|.+ +.|++++..+.. .....+..++....|.|.+++.+|+|.|+|. .|....
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~p~~--v~W~k~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~ 87 (103)
T 2e7b_A 15 LKDLEVLEGGAATLRCVLSSVAAP--VKWCYGNNVLRP-GDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTT 87 (103)
T ss_dssp CCCEEEESSSCEEEEEECSSCCCS--CEEEESSSBCCC-SSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBC
T ss_pred CccEEEECCCcEEEEEEEeCCCCC--eEEEECCEECCC-CCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEE
Confidence 344567899999999999988775 999999876542 2345566667777899999999999999998 444555
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
.+.+.|.
T Consensus 88 ~~~l~V~ 94 (103)
T 2e7b_A 88 SATLTVT 94 (103)
T ss_dssp CBCEEEE
T ss_pred EEEEEEE
Confidence 5556555
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=87.69 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=65.7
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-C--CeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-N--QSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+........... + ..|.|.+++..|.|.|.|.+.|..|.. ..
T Consensus 125 ~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~ 202 (212)
T 2r15_A 125 DVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TS 202 (212)
T ss_dssp SEEEEETTCCEEEEEEEECSSCC-EEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred CcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE-EE
Confidence 34577889999999999999888 8999999998876443333322 2 279999999999999999999988865 55
Q ss_pred eEEEEEEe
Q psy10918 90 AFFLNVMY 97 (207)
Q Consensus 90 ~~~l~v~~ 97 (207)
.+.|.|..
T Consensus 203 ~~~l~V~~ 210 (212)
T 2r15_A 203 DFTVSVFI 210 (212)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 66677763
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=82.32 Aligned_cols=79 Identities=11% Similarity=0.254 Sum_probs=60.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--------cCCeE-------ecCCeEEEEecCCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--------AQGII-------MTNQSLVLQRVNRQS 71 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--------~~~~~-------~~~~~l~i~~~~~~d 71 (207)
.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... ..... ..+.+|.|.+++.+|
T Consensus 23 ~~~~~p~~~~v~~G~~v~L~C~~~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 101 (137)
T 3qr2_A 23 GFVQAPLSQQRWVGGSVELHCEAVGSPVP-EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED 101 (137)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGG
T ss_pred eEEcCCCCEEEeCCCCEEEEEEEeeecCC-eEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCccc
Confidence 34455677788999999999999999888 999999887654210 00111 123579999999999
Q ss_pred CeeeEEEEeeeCCCC
Q psy10918 72 AGNYTCVGFNIEGDG 86 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~ 86 (207)
+|.|+|.+.|..|..
T Consensus 102 ~G~Y~C~a~N~~G~~ 116 (137)
T 3qr2_A 102 TGTYECRASNDPDRN 116 (137)
T ss_dssp CEEEEEEEECCTTSS
T ss_pred CEEEEEEEEecCCcc
Confidence 999999999988765
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=85.36 Aligned_cols=83 Identities=17% Similarity=0.304 Sum_probs=64.0
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCC--eEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...........+. +|.|.+++..|.|.|+|.+.|..|.. .
T Consensus 109 ~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~ 186 (194)
T 2a38_A 109 RLQSMTVRQGSQVRLQVRVTGIPTP-VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA-T 186 (194)
T ss_dssp CCCCEEECTTEEEEEEEEEEEESCC-EEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEE-E
T ss_pred CCccEEEcCCCEEEEEEEEEEecCC-eEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCce-E
Confidence 3445667889999999999988887 899999999887543333333333 69999999999999999999988765 4
Q ss_pred ceEEEEE
Q psy10918 89 NAFFLNV 95 (207)
Q Consensus 89 ~~~~l~v 95 (207)
..+.|.|
T Consensus 187 ~~~~l~V 193 (194)
T 2a38_A 187 STAELLV 193 (194)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4555554
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-12 Score=83.92 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=66.7
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+........+. ..+....|.|.+++.+|+|.|+|.+.|..|....
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~ 90 (197)
T 2j8h_A 12 RNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90 (197)
T ss_dssp CCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred CccEEcCCCEEEEEEEEeecCCC-EEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeE
Confidence 34457899999999999998886 999999987765433333332 2445567999999999999999999999887766
Q ss_pred ceEEEEeec
Q psy10918 186 PCVFHIVSA 194 (207)
Q Consensus 186 ~~~~~v~~~ 194 (207)
...+.|...
T Consensus 91 ~~~l~V~~~ 99 (197)
T 2j8h_A 91 TASLEVEVP 99 (197)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEcCC
Confidence 666666544
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-13 Score=82.55 Aligned_cols=77 Identities=21% Similarity=0.388 Sum_probs=54.5
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc----eeEEeecCceEEEEE--ecCCCCCCeEEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA----QAHILRSGTLSVVAY--SPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i--~~~~~~~~g~y~C~~~n~~g 181 (207)
...+..|+.+.|.|.+.|.|.| .+.|++++..+..... ......++....+.+ .+++.+|+|.|+|.|.|..|
T Consensus 18 ~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G 96 (117)
T 2v9t_A 18 DLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96 (117)
T ss_dssp CEEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTE
T ss_pred CEEEcCCCcEEEEEECCccCCC-eEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCcc
Confidence 3456789999999999999987 9999999876543321 112223333333322 25578999999999999998
Q ss_pred CCcc
Q psy10918 182 HQRV 185 (207)
Q Consensus 182 ~~~~ 185 (207)
....
T Consensus 97 ~~~s 100 (117)
T 2v9t_A 97 EAVS 100 (117)
T ss_dssp EEEC
T ss_pred ceEe
Confidence 7643
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.3e-12 Score=76.53 Aligned_cols=85 Identities=9% Similarity=0.184 Sum_probs=60.2
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee-------ccceeEEe-ecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV-------NVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
+....+.+|+.+.|.|.+.+.|.+ .+.|++.+..... ...+.... .......|.|.+++.+|+|.|+|.|.
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 86 (124)
T 3rbg_A 8 TETITVEEGQTLTLKCVTSLRKNS-SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY 86 (124)
T ss_dssp EEEEEEETTSCEEEEEECCCCTTC-EEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CccEEEcCCCCEEEEeEEeccCCC-EEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence 344567899999999999998886 9999976654321 11122221 22334679999999999999999999
Q ss_pred cCCCCCccceEEEEe
Q psy10918 178 NKIGHQRVPCVFHIV 192 (207)
Q Consensus 178 n~~g~~~~~~~~~v~ 192 (207)
|. |.....+.+.|.
T Consensus 87 n~-g~~~~~~~l~V~ 100 (124)
T 3rbg_A 87 SD-SVSTKEVKVIVL 100 (124)
T ss_dssp SS-SEEEEEEEEEEE
T ss_pred cC-CCCcEEEEEEEE
Confidence 98 766555555444
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-13 Score=86.64 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=63.8
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+.+|+.+.|.|.+.+.|.+ .+.|++++..+...........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|.
T Consensus 108 ~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 185 (189)
T 2v5t_A 108 ATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQ 185 (189)
T ss_dssp EETTSCCCEEEECEEEEESCC-EEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEE
T ss_pred ccccCCCcEEEEEEEccCCCC-eEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce-eEEEEEE
Confidence 456789999999999988877 99999999988764433333345789999999999999999999988765 4456666
Q ss_pred EE
Q psy10918 95 VM 96 (207)
Q Consensus 95 v~ 96 (207)
|.
T Consensus 186 V~ 187 (189)
T 2v5t_A 186 VF 187 (189)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=75.80 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc------------------cccCCeEecCCeEEEEecCCCCCeee
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH------------------NIAQGIIMTNQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~d~g~Y 75 (207)
+..+.+|+++.|.|...... ...+.|+|....... ...+.....+++|.|.+++.+|+|.|
T Consensus 9 p~~~~~G~~v~L~~~~~p~~-~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Y 87 (111)
T 2qsq_A 9 PFNVAEGKEVLLLVHNLPQH-LFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFY 87 (111)
T ss_dssp SSEEETTSCEEEEEESCCSS-EEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEE
T ss_pred cceeccCCCEEEEEeCCCCC-ceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEE
Confidence 34678999999999853333 237999997643210 11223345678999999999999999
Q ss_pred EEEEeeeCCCCccceEEEEEEe
Q psy10918 76 TCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 76 ~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
+|.+.+..+......+.|.|..
T Consensus 88 tc~v~~~~~~~~~~~~~L~V~~ 109 (111)
T 2qsq_A 88 TLHVIKSDLVNEEATGQFRVYP 109 (111)
T ss_dssp EEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEeCCCcEEEEEEEEEEec
Confidence 9999987664445566777764
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-14 Score=85.45 Aligned_cols=85 Identities=16% Similarity=0.312 Sum_probs=63.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe-----c---CCeEEEEecCCCCC-eeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-----T---NQSLVLQRVNRQSA-GNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~---~~~l~i~~~~~~d~-g~Y~C~~~~~ 82 (207)
+....+.+|+++.|.|.+.+.|.+..+.|++++..+......++.. . ...|.|.+++..|. |.|.|.+.|.
T Consensus 20 ~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~ 99 (122)
T 2cry_A 20 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNS 99 (122)
T ss_dssp ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECC
Confidence 4566788999999999999999874499999998877522122221 1 23799999999998 9999999999
Q ss_pred CCCCccceEEEEEEe
Q psy10918 83 EGDGESNAFFLNVMY 97 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~ 97 (207)
.|.. ...+.|.|..
T Consensus 100 ~G~~-~~~~~l~V~~ 113 (122)
T 2cry_A 100 FGSD-TEIIRLKEQG 113 (122)
T ss_dssp SCEE-EEEECCCCSC
T ss_pred CCeE-EEEEEEEECC
Confidence 8866 3455555553
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=73.57 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=53.4
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+..|+.+.|.|.+. .|.+ .+.|++++..+.. .....+...+....|.|.++..+|+|.|+|.|.|
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~-~v~W~k~g~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 89 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWA-EVRWTKDGEEVVE-SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTC-CCEEEETTEECCC-BTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS
T ss_pred EEEEcCCeEEEEEEec-CCCC-eEEEEECCEECcc-CCCEEEEECCCEEEEEECCCCcccCEEEEEEEec
Confidence 3467899999999995 6665 9999999876543 2334455556567899999999999999999998
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-12 Score=79.19 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=57.5
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec---------cceeEEe---ecCceEEEEEecCCCCCCeEEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN---------VAQAHIL---RSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
+....+..|+.+.|.|.+.+.|.+ .+.|++++..+... .....+. .......|.|.+++.+|+|.|+
T Consensus 28 p~~~~v~~G~~v~L~C~~~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (137)
T 3qr2_A 28 PLSQQRWVGGSVELHCEAVGSPVP-EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYE 106 (137)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCC-EEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEE
T ss_pred CCCEEEeCCCCEEEEEEEeeecCC-eEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEE
Confidence 444567899999999999999987 99999977643211 0111111 1123457999999999999999
Q ss_pred EEEecCCCCCc
Q psy10918 174 CWGSNKIGHQR 184 (207)
Q Consensus 174 C~~~n~~g~~~ 184 (207)
|.|.|..|...
T Consensus 107 C~a~N~~G~~~ 117 (137)
T 3qr2_A 107 CRASNDPDRNH 117 (137)
T ss_dssp EEEECCTTSSS
T ss_pred EEEEecCCccc
Confidence 99999998764
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=73.37 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc---------eeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA---------QAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
.+....+.+|+.+.|.|.+.+ .+ .+.|++||..+..... +..+..++....|.|.++..+|+|.|+|.
T Consensus 14 ~l~d~~v~eG~~a~f~C~vs~--~p-~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~ 90 (112)
T 2e6q_A 14 GLEDVQVYDGEDAVFSLDLST--II-QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGF 90 (112)
T ss_dssp CCCCEEEETTCEEEEEEEESS--CC-CCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEE
T ss_pred CCCCeEEcCCCcEEEEEEECC--CC-eEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEE
Confidence 344566889999999999997 44 8999999998754431 45566667777899999999999999875
Q ss_pred EecCCCCCccceEEEEe
Q psy10918 176 GSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 176 ~~n~~g~~~~~~~~~v~ 192 (207)
..+.. ..++.|.|.
T Consensus 91 ~~~~~---~ssA~L~V~ 104 (112)
T 2e6q_A 91 SCPGV---QDSAALTIQ 104 (112)
T ss_dssp EETTE---EEEEEEEEE
T ss_pred EECCe---eEEEEEEEe
Confidence 55432 345566555
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=74.55 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=58.3
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.+ .| .+.|++++..+... ..... .+ ..|.|.++..+|+|.|+|.|.|..|....
T Consensus 8 p~~~~v~~G~~~~l~C~~~~--~p-~v~W~k~g~~~~~~-~~~~~--~~--~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 79 (95)
T 4hwu_A 8 PEAYVVAPGESLELQCMLKD--AA-VISWTKDGVHLGPN-NRTVL--IG--EYLQIKGATPRDSGLYACTAARTVDSETW 79 (95)
T ss_dssp CEEEEECTTSCEEEECCCCT--TC-EEEEEETTEEECCC-SSEEE--ET--TEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred CCcEEECCCCEEEEEEEeCC--CC-EEEEEECCEECCCC-ceEEE--eC--CEEEECcCCcccCEEEEEEEccCCCcEEE
Confidence 34445779999999999986 34 99999998765322 11112 12 25999999999999999999999987655
Q ss_pred ceEEEEeecccC
Q psy10918 186 PCVFHIVSAVTF 197 (207)
Q Consensus 186 ~~~~~v~~~~~~ 197 (207)
. +.+.+.+++
T Consensus 80 ~--~~l~V~~~~ 89 (95)
T 4hwu_A 80 I--FMVNVTDAA 89 (95)
T ss_dssp E--EEEEECCC-
T ss_pred E--EEEEEeCCc
Confidence 5 444444433
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=82.54 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=62.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
....+.+|+++.|.|.+.+.+++..+.|++++..+.. ...+..|.|.+++.+|+|.|+|.+.|..+...+..+.
T Consensus 96 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 169 (175)
T 1fnl_A 96 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 169 (175)
T ss_dssp SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEE
Confidence 3456789999999999987655459999999987643 2345789999999999999999999876655566777
Q ss_pred EEEE
Q psy10918 93 LNVM 96 (207)
Q Consensus 93 l~v~ 96 (207)
|.|.
T Consensus 170 l~V~ 173 (175)
T 1fnl_A 170 ITIT 173 (175)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7775
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=83.12 Aligned_cols=81 Identities=19% Similarity=0.328 Sum_probs=63.2
Q ss_pred CCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 13 NPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
....+.+|+++.|.|.+. +.+.+ .+.|++++..+... ..+..|.|.+++.+|+|.|+|.+.|..+...+..+
T Consensus 93 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 165 (176)
T 1f2q_A 93 SAEVVMEGQPLFLRCHGWRNWDVY-KVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165 (176)
T ss_dssp SCSEEETTSCEEEEEEEGGGCCEE-EEEEEETTEECCSC------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CcceeeCCCCEEEEEEecCCCCce-EEEEEECCEEEeee------cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCE
Confidence 345678999999999995 45544 99999999877431 23578999999999999999999986554456677
Q ss_pred EEEEEeCCc
Q psy10918 92 FLNVMYSPT 100 (207)
Q Consensus 92 ~l~v~~~~~ 100 (207)
.|.|..+|.
T Consensus 166 ~l~V~~~p~ 174 (176)
T 1f2q_A 166 NITVIKAPR 174 (176)
T ss_dssp EEEEECSCC
T ss_pred EEEEecCCC
Confidence 888886653
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-12 Score=83.68 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=65.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
.....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ......+..|.|.+++..|.|.|+|.+.|..|.. ...+
T Consensus 120 ~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~ 195 (201)
T 3s97_C 120 FKDVYALMGQNVTLECFALGNPVP-DIRWRKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQA 195 (201)
T ss_dssp CCCEEEETTCCEEEEEEEEEESCC-EEEEEETTBCCCTT--CEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred CCceEEecCCcEEEEEEccCCCCC-ceEEEeCCCcCCCc--eeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeE
Confidence 346677899999999999988887 99999999877643 2334456789999999999999999999988766 4466
Q ss_pred EEEEE
Q psy10918 92 FLNVM 96 (207)
Q Consensus 92 ~l~v~ 96 (207)
.|.|+
T Consensus 196 ~l~V~ 200 (201)
T 3s97_C 196 RIYVQ 200 (201)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66664
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=85.63 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=67.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.... ...|.|.+++..|.|.|+|.+.|..|...
T Consensus 121 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 192 (218)
T 3k0w_A 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDSQD 192 (218)
T ss_dssp EEECCCCEEECTTCCEEEECEEEBSSCC-EEEEEETTEECTTCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred EEECCCceeecCCCcEEEEEEecccCCC-eEEEEECCEECCCCC-------CCEEEEeecChhcCEEEEEEEEcCCCCce
Confidence 3344556678899999999999988887 999999998876532 35799999999999999999999888766
Q ss_pred cceEEEEEEe
Q psy10918 88 SNAFFLNVMY 97 (207)
Q Consensus 88 ~~~~~l~v~~ 97 (207)
+..+.|.|..
T Consensus 193 s~~~~l~V~~ 202 (218)
T 3k0w_A 193 SKKVEIIIDE 202 (218)
T ss_dssp CCCEEEEECC
T ss_pred eeeEEEEEeC
Confidence 7777777764
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=75.89 Aligned_cols=89 Identities=17% Similarity=0.361 Sum_probs=59.8
Q ss_pred cCCCcccCCCcEEEEeEeccC-CCCcEEEEEECCccccc-----------cccCCeE-ecCCeEEEEecCCCCCeeeEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHH-----------NIAQGII-MTNQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~-----------~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~ 78 (207)
+....+.+|++++|.|...+. .....+.|++++..+.. ....++. ..+.+|+|.+++.+|+|.|+|.
T Consensus 10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~ 89 (117)
T 3q0h_A 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCI 89 (117)
T ss_dssp SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEE
T ss_pred cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEE
Confidence 345678899999999998763 22237999997643311 0011222 2356799999999999999999
Q ss_pred EeeeCCCCccceEEEEEEeCCc
Q psy10918 79 GFNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 79 ~~~~~~~~~~~~~~l~v~~~~~ 100 (207)
+.+.........+.|.|..+|.
T Consensus 90 v~~~~~g~~~~~~~L~V~~pp~ 111 (117)
T 3q0h_A 90 YHTYPDGTYTGRIFLEVLESSV 111 (117)
T ss_dssp EEEETTCCEEEEEEEEEECC--
T ss_pred EEECCCCCeEEEEEEEEEccCc
Confidence 8754333335577899987765
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=86.37 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=59.8
Q ss_pred cccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 16 HIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 16 ~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
.+.+|+++.|.|.+ .+.|.+ .+.|++++..............++.|.|.+++.+|+|.|+|.+.|..|.. ...+.|.
T Consensus 132 ~~~~g~~v~l~C~~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~ 209 (214)
T 3jz7_A 132 SEEIGNDFKLKCEPKEGSLPL-QFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLD 209 (214)
T ss_dssp CCBTTCCEEEEEECSBCCSSC-EEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred ceecCCcEEEEecCCCCCCCC-EEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 46789999999999 788877 99999965433222222233445689999999999999999999988866 5566666
Q ss_pred EE
Q psy10918 95 VM 96 (207)
Q Consensus 95 v~ 96 (207)
|.
T Consensus 210 V~ 211 (214)
T 3jz7_A 210 VV 211 (214)
T ss_dssp CB
T ss_pred Ee
Confidence 65
|
| >3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-13 Score=74.23 Aligned_cols=60 Identities=20% Similarity=0.421 Sum_probs=49.4
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEec-CCCCCeeeEEEEee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRV-NRQSAGNYTCVGFN 81 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~~ 81 (207)
+....+..|++++|+|.+.+.| .|.|+|++..+... .+++|.|.++ +.+|+|.|+|.+..
T Consensus 6 p~~~v~~~G~~v~L~C~~~g~P---~i~W~kdg~~l~~~-------~~~~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 6 IEYKVSISGTSVELTCPLDSDE---NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp CCCEEEEETTEEEEECSSCCCS---SCEEEETTEECTTC-------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred CceeEEEcCCeEEEEEECCCCC---cEEEEECCEECcCC-------CCCEEEECccCccCcCEEEEEEEcc
Confidence 3455667899999999999887 38999999988643 3568999996 78999999999864
|
| >3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-13 Score=89.63 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=76.5
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---c-cc------cccCCeEe------cCCeEEEEecCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---L-HH------NIAQGIIM------TNQSLVLQRVNRQ 70 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~-~~------~~~~~~~~------~~~~l~i~~~~~~ 70 (207)
.+.+....+.+|++++|.|.+.+.... .+.||+... . + .. ....++.. ...+|+|.+++.+
T Consensus 4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~-~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~ 82 (185)
T 3c6l_A 4 RQSPQSLTVWEGETAILNCSYEDSTFD-YFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPG 82 (185)
Confidence 455667788999999999998766555 799998531 1 1 00 00111111 1236999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEeC-----CcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCce
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMYS-----PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA 140 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~ 140 (207)
|+|.|+|.+.+... .......|.|... |.+....+ ....+.|.|.+.+..+.+.+.|......
T Consensus 83 DsG~Y~C~~~~~~~-~fg~gT~L~V~~~~~~~~P~V~~~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~ 150 (185)
T 3c6l_A 83 DSATYFCAASDNRI-FFGDGTQLVVKPNIQNPEPAVYQLKD------PRSQDSTLCLFTDFDSQINVPKTMESGT 150 (185)
Confidence 99999999875211 1112234555532 22211111 1227899999999655459999865543
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-12 Score=83.80 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
...+.+|+++.|.|.+.+.++...+.|++++..+.. ...+..|.|.+++.+|+|.|+|.+.|..+...+..+.|
T Consensus 97 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l 170 (204)
T 3sgj_C 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170 (204)
T ss_dssp CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec------ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEE
Confidence 356789999999999966544339999999987643 22356899999999999999999998554445667788
Q ss_pred EEEeCCc
Q psy10918 94 NVMYSPT 100 (207)
Q Consensus 94 ~v~~~~~ 100 (207)
.|..++.
T Consensus 171 ~V~~~~~ 177 (204)
T 3sgj_C 171 TITQGLA 177 (204)
T ss_dssp EEEC---
T ss_pred EEeCcCC
Confidence 8886554
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=72.67 Aligned_cols=68 Identities=12% Similarity=0.269 Sum_probs=54.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
...+..|+.+.|.|.+. .|.+ .+.|++++..+... ....+..++....|.|.++..+|+|.|+|.|.|
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~-~v~W~k~g~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~ 87 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQT-EVTWYKDGKKLSSS-SKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSS-CCEEEETTEECCCC-SSEEEEEETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred cEEEeCCCcEEEEEEec-CCCC-ceEEEECCEECCCC-CCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC
Confidence 34577999999999998 6666 99999998775432 244455566667899999999999999999965
|
| >2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=85.20 Aligned_cols=165 Identities=10% Similarity=0.119 Sum_probs=89.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cc---c-ccc------ccCCeEec------CCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KT---L-HHN------IAQGIIMT------NQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~---~-~~~------~~~~~~~~------~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|.+.+.... .+.||+.. .. + ... ...++... ..+|.|.+++.
T Consensus 3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~-~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 81 (203)
T 2bnu_A 3 VTQIPAALSVPEGENLVLNCSFTDSAIY-NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP 81 (203)
T ss_dssp EEEECSEEEEETTCCEEEEEEESCCCEE-EEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred cEEcCCEEEEeCCCCEEEEEEECCCCcc-eEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCc
Confidence 3455677788999999999998766544 89999843 11 1 100 01122211 13699999999
Q ss_pred CCCeeeEEEEeeeC---CC-CccceEEEEEEeCCcccCCCCceeee-eeCCcEEEEEEecc-CCCCceEEEEEcCceeee
Q psy10918 70 QSAGNYTCVGFNIE---GD-GESNAFFLNVMYSPTCKPHQQRVLGV-ARQEKVNISCEVDA-NPPDVKFSWTFNNSAETV 143 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~---~~-~~~~~~~l~v~~~~~~~~~~~~~~~~-~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~ 143 (207)
+|+|.|+|.+.+.. .. .......|.|...+... .+..... .....++|.|.+.+ .|.| .+ .+......
T Consensus 82 ~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~--~P~V~~~~~~~~~~~L~C~~~g~~P~p-~v---~~~~~~~~ 155 (203)
T 2bnu_A 82 GDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNP--DPAVYQLRRSKSSDKSVCLFTDFDSQT-NV---SQSKDSDV 155 (203)
T ss_dssp GGCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSC--CCEEEEECCSSSSSCEEEEEESCCTTC-CC---CCCSCTTC
T ss_pred ccCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCC--CCeEEecCCCCCCcEEEEEccccccCc-cc---ccccccce
Confidence 99999999998642 11 11123467776432100 1111110 12247899999999 5666 77 22222111
Q ss_pred ccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 144 NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 144 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
...............+.+....+.+.+.|+|.+...
T Consensus 156 ~~t~~~~~~~~~ly~~s~~~~~w~~~~~~tC~v~~~ 191 (203)
T 2bnu_A 156 YITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFN 191 (203)
T ss_dssp EECCCEEEEEGGGTEEEEEEEEEECSSSCCGGGGGT
T ss_pred EecccceecccCccceeccHhHcCCCCceEEEEEeC
Confidence 101111111112222333334445566899988643
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-12 Score=85.16 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=64.1
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEE----CCccccccccCCeE----------ecCCeEEEEecCCCCCeeeEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH----NNKTLHHNIAQGII----------MTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~----~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~Y~C 77 (207)
.....+.+|+++.|.|.+.+.|.+ .+.|++ ++..+......... .....|.|.+++..|.|.|+|
T Consensus 121 ~~~~~~~~g~~v~L~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 199 (241)
T 3grw_A 121 PANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC 199 (241)
T ss_dssp TCSEECCTTCCEEEEEEEECSSCC-EEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred CccceecCCCEEEEEEEEecCCCC-EEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence 345567789999999999998888 999999 77776553332221 123469999999999999999
Q ss_pred EEeeeCCCCccceEEEEEEeCCccc
Q psy10918 78 VGFNIEGDGESNAFFLNVMYSPTCK 102 (207)
Q Consensus 78 ~~~~~~~~~~~~~~~l~v~~~~~~~ 102 (207)
.+.|..|.. ...+.|.|..+|..+
T Consensus 200 ~a~N~~g~~-~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 200 RATNFIGVA-EKAFWLSVHGPRAAE 223 (241)
T ss_dssp EEECSSCEE-EEEEEEEC-------
T ss_pred EEecCcceE-EEEEEEEecCCCCCC
Confidence 999988876 557788888766543
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=81.89 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=62.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|+.+.|.|.+.+.|.+..+.|++++..+...... ..+..|.|.+++ |+|.|+|.+.|..|...+..+
T Consensus 113 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~ 187 (195)
T 2c5d_C 113 PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTA 187 (195)
T ss_dssp CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS---SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCE
T ss_pred CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc---CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEE
Confidence 445677889999999999988766589999999888754322 345679999887 899999999998887655677
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 188 ~l~V 191 (195)
T 2c5d_C 188 TITV 191 (195)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7777
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=79.56 Aligned_cols=84 Identities=17% Similarity=0.368 Sum_probs=61.7
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEE---------CCccccccccCCeE-e----cCCeEEEEecCCCCCeeeE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH---------NNKTLHHNIAQGII-M----TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~---------~~~~~~~~~~~~~~-~----~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+....+.+|++++|.|.+.+.+.+ .+.|++ ++..+.. .++. . .+.+|.|.+++..|+|.|+
T Consensus 44 ~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~i~~~~~~~~~~---~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 119 (145)
T 1z9m_A 44 WTSDETVVAGGTVVLKCQVKDHEDS-SLQWSNPAQQTLYFGEKRALRD---NRIQLVTSTPHELSISISNVALADEGEYT 119 (145)
T ss_dssp BCCCEEEETTSCEEEEEECSCCTTC-CEEEECTTCCEEEETTEECSCC---TTEEEEEECSSEEEEEECSCCGGGCEEEE
T ss_pred CCceEEEEcCCCEEEEEEEcCCCCc-EEEEECCCCcEEEECCceeccc---CCEEEecCCCCeEEEEECCCChhhCEEEE
Confidence 4556778899999999999888766 899994 3322221 1111 1 1357999999999999999
Q ss_pred EEEeeeCCCCccceEEEEEEeCCc
Q psy10918 77 CVGFNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 77 C~~~~~~~~~~~~~~~l~v~~~~~ 100 (207)
|.+.|. +.. ...+.|.|..+|.
T Consensus 120 C~~~n~-~~~-~~~~~L~V~~~P~ 141 (145)
T 1z9m_A 120 CSIFTM-PVR-TAKSLVTVLGIPQ 141 (145)
T ss_dssp EEECSS-SCE-EEEEEEEEECCCC
T ss_pred EEEEcC-CCc-eEEEEEEEEeCCC
Confidence 999987 544 5577888887664
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=72.32 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=58.4
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.+.|.|.+.+. + .+.|++++..+.. ..+..+..++....|.|.+++.+|+|.|+|.|.|. ..
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~ 86 (108)
T 2dm7_A 15 LKTKEASEGATATLQCELSKV--A-PVEWKKGPETLRD-GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE----RT 86 (108)
T ss_dssp CBCCEEETTSCEEEEEEBSSS--C-CCEEESSSSBCCS-SSSCEEEEETTEEEEEESSCCTTTCSEEEEEETTE----EE
T ss_pred CCcEEEeCCCcEEEEEEeCCC--C-eeEEEECCEECCC-CCCEEEEecCCEEEEEECCCCcccCEEEEEEEcCC----EE
Confidence 344567899999999999765 4 8999999876542 23444555666778999999999999999999652 33
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
.+.+.|.
T Consensus 87 ~~~l~V~ 93 (108)
T 2dm7_A 87 SATLTVR 93 (108)
T ss_dssp EEECEEE
T ss_pred EEEEEEe
Confidence 4444444
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=80.37 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=61.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
.....+.+|++++|.|.+.+.|.+ .+.|++++..+ ...+..|.|.+++.+|+|.|+|.+.|..+.. ...+
T Consensus 104 ~~~~~v~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~~~~ 173 (184)
T 2ny1_B 104 NSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKI 173 (184)
T ss_dssp SSCSEEETTCCEEEEEECCTTCCC-EEEEECTTSCE--------EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred CCCceeecCCCEEEEEEcCCCCCC-EEEEEeCCCcc--------ccCceEEEEecCCcCCCeEEEEEEEECCceE-EEEE
Confidence 345578899999999999888877 99999987654 2346789999999999999999999765544 4566
Q ss_pred EEEEEeCC
Q psy10918 92 FLNVMYSP 99 (207)
Q Consensus 92 ~l~v~~~~ 99 (207)
.|.|...|
T Consensus 174 ~l~V~~~p 181 (184)
T 2ny1_B 174 DIVVLAFQ 181 (184)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 77777544
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=81.98 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=58.2
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.+|+.++|.|.+.+ +.+ .+.|++++..+... ............|.|.+++.+|+|.|+|.|.|..|....+..+
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~ 90 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAR-EYRLDKEESPAPWD--RQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL 90 (196)
T ss_dssp EEETTCCEEEEEECCT-TCC-EEEEEETTSCSCSE--EECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred cCCCCCcEEEEeeCCC-CCC-EEEEEECCCCCccc--ccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccE
Confidence 4678999999999988 555 99999998765321 1111112345679999999999999999999998732233334
Q ss_pred EEeeccc
Q psy10918 190 HIVSAVT 196 (207)
Q Consensus 190 ~v~~~~~ 196 (207)
.+.+.+.
T Consensus 91 ~l~V~~~ 97 (196)
T 3p2t_A 91 ELVMTGA 97 (196)
T ss_dssp EEEEECS
T ss_pred EEEecCC
Confidence 4444443
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.6e-12 Score=86.32 Aligned_cols=118 Identities=9% Similarity=0.083 Sum_probs=59.1
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE---ecCCeEEEEecCCCCCeeeEEEEeeeC----CCCc
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---MTNQSLVLQRVNRQSAGNYTCVGFNIE----GDGE 87 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~~~~----~~~~ 87 (207)
..+.+|++++|.|.+.+.+ + .+.|+|++..+......... ..+..|.|.+++ |+|.|+|.+.+.. ....
T Consensus 116 ~~V~~G~~vtL~C~~~~~~-~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~ 191 (257)
T 1b6u_A 116 PTVLAGESVTLSCSSRSSY-D-MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNS 191 (257)
T ss_dssp TTCBTTCEEEEEEECSSCC-S-EEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCC
T ss_pred CccCCCCEEEEEEeCCCCC-c-EEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccC
Confidence 3678999999999987754 4 89999999876542211111 124579999998 9999999998653 2344
Q ss_pred cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcC
Q psy10918 88 SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNN 138 (207)
Q Consensus 88 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~ 138 (207)
+..+.|.|...|......+.......|..+.|.|... .+.. .+.|...+
T Consensus 192 S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~-~~~~-~~~~~~~~ 240 (257)
T 1b6u_A 192 SDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAE-QKLI-SEEDLNLD 240 (257)
T ss_dssp CCCEEECCBCCC---------------------------------------
T ss_pred CCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEc-chHH-HHHHhhhh
Confidence 6678888887765442222222345678888997664 4554 88887643
|
| >4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-12 Score=75.11 Aligned_cols=76 Identities=9% Similarity=0.179 Sum_probs=52.3
Q ss_pred CcccCCCcEEEEeEeccCCCC----cEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC--Ccc
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPV----YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD--GES 88 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~----~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~--~~~ 88 (207)
..+.+|++|+|.|.+...+.. ..+.|+|++..+.. ...+..|.|.+++..|+|.|.|.+.+..+. ..+
T Consensus 17 ~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~------~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S 90 (108)
T 4hwn_A 17 AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS------RGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQS 90 (108)
T ss_dssp SSCBTTCCEEEEEEC---------CCEEEEEETTEEEEE------EESCCEEEESSCCGGGCEEEEEEEECTTSSSEEEC
T ss_pred CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC------CCcccEEEeCccCcccCeEEEEEEEeCCCceeccC
Confidence 357899999999998754432 13999999987642 234577999999999999999999875432 234
Q ss_pred ceEEEEEE
Q psy10918 89 NAFFLNVM 96 (207)
Q Consensus 89 ~~~~l~v~ 96 (207)
..+.|.|.
T Consensus 91 ~~l~L~V~ 98 (108)
T 4hwn_A 91 PQLEIRVQ 98 (108)
T ss_dssp CCEEECCB
T ss_pred CCEEEEEE
Confidence 45555444
|
| >3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-13 Score=89.32 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=81.1
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----cc------ccCCeEec------CCeEEEEecC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----HN------IAQGIIMT------NQSLVLQRVN 68 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----~~------~~~~~~~~------~~~l~i~~~~ 68 (207)
.+.+.+....+.+|++++|.|...+.... .+.||+.. .... .. ...++... ...|+|.+++
T Consensus 2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~ 80 (199)
T 3gsn_A 2 NVEQSPQSLHVQEGDSTNFTCSFPSSNFY-ALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQ 80 (199)
T ss_dssp CCEEECSEEEEETTCCCEEEEECCCTTCC-CEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCC
T ss_pred eEEECCCEEEEeCCCCEEEEEEEcCCCCC-EEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCc
Confidence 34566777788999999999998765444 79999842 2111 00 01122211 1359999999
Q ss_pred CCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeee-eCCcEEEEEEeccCCCCceEEEEEcCceee
Q psy10918 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVA-RQEKVNISCEVDANPPDVKFSWTFNNSAET 142 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~ 142 (207)
.+|+|.|+|.+........-....|.|...... ..+...... ....+.|.|.+.+..+..++.|.++|..+.
T Consensus 81 ~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~ 153 (199)
T 3gsn_A 81 PEDSATYLCARNTGNQFYFGTGTSLTVIPNIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYI 153 (199)
T ss_dssp GGGCEEEEEEEESSSCEEECSCEEEEEECCCSS--CCCEEEECCCSSSSSSCCEEEETCCTTCCSSCSSCSSEEE
T ss_pred ccCCccEEEEEcccccccCCCCEEEEEecccCC--CCCEEEEcccCCCCceEEEEeecccCCeEeEeccCCCeEe
Confidence 999999999986421111122345777642110 011111100 113478999999986678999999887654
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-12 Score=74.79 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=52.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---cc-c------cccCCeEec----CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---LH-H------NIAQGIIMT----NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~~-~------~~~~~~~~~----~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|.+.+.+.+ .+.|+++.. . +. . ....++... ..+|.|.+++.+|
T Consensus 4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (108)
T 1jhl_L 4 LTQSPSYLVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED 82 (108)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred eeccCCeeEEcCCCCEEEEeEECCCCCc-eEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHH
Confidence 4455667788999999999999888766 899999642 1 10 0 001122211 2369999999999
Q ss_pred CeeeEEEEeee
Q psy10918 72 AGNYTCVGFNI 82 (207)
Q Consensus 72 ~g~Y~C~~~~~ 82 (207)
+|.|.|.+.|.
T Consensus 83 sG~Y~C~~~n~ 93 (108)
T 1jhl_L 83 FAMYICQQHNE 93 (108)
T ss_dssp CSEEEEEECSS
T ss_pred CEEEEEEEccC
Confidence 99999999875
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=80.28 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=66.4
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+...+....|.|.+++.+|+|.|+|.+.|..|......
T Consensus 16 ~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 93 (197)
T 3lcy_A 16 DVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQ-SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 93 (197)
T ss_dssp CEEEETTSEEEEEEEEEEESCC-EEEEEETTEEECC-CSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred ceEEeCCCcEEEEEEEecCCCC-EEEEEECCEECCC-CccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEE
Confidence 3457799999999999988887 9999999876532 2334455566667899999999999999999999888776666
Q ss_pred EEEEee
Q psy10918 188 VFHIVS 193 (207)
Q Consensus 188 ~~~v~~ 193 (207)
.+.|..
T Consensus 94 ~l~v~~ 99 (197)
T 3lcy_A 94 KLLLQA 99 (197)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 665554
|
| >4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-10 Score=76.05 Aligned_cols=166 Identities=14% Similarity=0.252 Sum_probs=97.7
Q ss_pred CCCcccCCCcEEEEeEeccCCCC-cEEEEEE--CCcccc------cc---------ccCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV-YKVEWRH--NNKTLH------HN---------IAQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~--~~~~~~------~~---------~~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+.... +.+.|+| .|+-+. .. ..-++. .++ ..|.+.+++
T Consensus 8 G~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~ 87 (254)
T 4f9p_D 8 GAEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLT 87 (254)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCC
Confidence 34567899999999999876432 3588987 232221 00 001111 111 138888999
Q ss_pred CCCCeeeEEEEeeeCCCCccceEEEEEEeC----Cc---------------cc-CCCCceeeeeeCCcEEEEEEeccCCC
Q psy10918 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYS----PT---------------CK-PHQQRVLGVARQEKVNISCEVDANPP 128 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~----~~---------------~~-~~~~~~~~~~~g~~~~l~C~~~~~~~ 128 (207)
.+|.+.|+|.-..... ..-+...++|..+ |. +. .-.+....+.+|+.++|.|.+...-.
T Consensus 88 ~eDTAvYYCAr~~~~d-~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~ 166 (254)
T 4f9p_D 88 SDDSAVYFCARSDYGA-YWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSIS 166 (254)
T ss_dssp GGGCEEEECEESSSCC-EECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCT
T ss_pred CCCCEEEEEEecCCCC-CcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCccc
Confidence 9999999997542211 1111223455321 10 00 11233345678999999999876544
Q ss_pred CceEEEEEc--Cceeeec---c--------ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 129 DVKFSWTFN--NSAETVN---V--------AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 129 ~~~~~W~~~--~~~~~~~---~--------~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
. .+.|++. |+..... . ++......++..+|+|..++.+|.+.|.|...+..
T Consensus 167 ~-~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~~~ 230 (254)
T 4f9p_D 167 N-NLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNSW 230 (254)
T ss_dssp T-CCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECSSS
T ss_pred C-CcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecCCC
Confidence 4 6899963 3321110 0 12233344556679999999999999999876543
|
| >4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=6.9e-11 Score=78.63 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=81.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc---c-c-----ccCCeEec------CCeEEEEecCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH---H-N-----IAQGIIMT------NQSLVLQRVNR 69 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~---~-~-----~~~~~~~~------~~~l~i~~~~~ 69 (207)
.+.+.+....+.+|++++|.|...+.... .+.|||.. ..+. . . ...++... ..+|+|.+++.
T Consensus 4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~~~-~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~ 82 (208)
T 4ei6_A 4 KVQQSPESLSVPEGGMASLNCTSSDRNFQ-YFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQP 82 (208)
T ss_dssp CEEEECSEEEEETTCCEECEEEECCTTEE-EEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCG
T ss_pred eEEEeCCEEEEECCCCEEEEEEEcCCCCc-eEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcc
Confidence 34566677788999999999998775444 79999843 1111 0 0 01122211 24599999999
Q ss_pred CCCeeeEEEEeeeC----CCCccceEEEEEEeCCcccCCCCceeeee-eCCcEEEEEEeccCCCCceEEEEEcCceee
Q psy10918 70 QSAGNYTCVGFNIE----GDGESNAFFLNVMYSPTCKPHQQRVLGVA-RQEKVNISCEVDANPPDVKFSWTFNNSAET 142 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~----~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~ 142 (207)
+|+|.|+|.+.... ....-....|.|...... ..+...... ....++|.|.+.+.++..++.|.++|..+.
T Consensus 83 ~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~--~~PsVf~l~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~ 158 (208)
T 4ei6_A 83 SDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI 158 (208)
T ss_dssp GGCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSS--CCCEEEEEEBSSCTTCEEEEEESCCTTCCCCCCSSTTCEE
T ss_pred cCCCcEEEEEecCCCccccccCCCCEEEEEeCcccC--CCCEEEEcccCCCCceEEEEeeccCCceEeeecccCcEEE
Confidence 99999999986421 111223346777643111 111111111 112378999999987677999999887643
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=82.96 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=60.8
Q ss_pred cccCCCcEEEEeEeccCCC-CcEEEEEECCcccccccc---C-C--e----EecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHNIA---Q-G--I----IMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~~~---~-~--~----~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.+|++++|.|.+.+.+. +..+.|++++..+..... . . . .....+|.|.+++.+|+|.|+|.+.|..|
T Consensus 116 ~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g 195 (213)
T 2x1w_L 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 195 (213)
T ss_dssp EEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred EEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCC
Confidence 7889999999999987543 237999999886432110 0 0 0 11234699999999999999999999888
Q ss_pred CCccceEEEEEEeCCc
Q psy10918 85 DGESNAFFLNVMYSPT 100 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~ 100 (207)
.. +..+.|.|..+|.
T Consensus 196 ~~-~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 196 TK-KNSTFVRVHEDPI 210 (213)
T ss_dssp EE-EEEEEEEEEC---
T ss_pred cE-EEEEEEEEecccc
Confidence 66 6677888886654
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=80.45 Aligned_cols=77 Identities=13% Similarity=0.281 Sum_probs=60.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|+++.|.|.+.+.|.+..+.|++++..+.... .....|.|.++ +|+|.|+|.+.|..|...+..+
T Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-----~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~ 177 (182)
T 1rhf_A 105 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTA 177 (182)
T ss_dssp CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCC--SSCEEEEEEEEETTEEEECCCE
T ss_pred CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC-----CCceEEEEecc--ccCeEEEEEEECCCCCcccceE
Confidence 4456788999999999999888765899999998875432 14567888887 5899999999999887655566
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 178 ~l~V 181 (182)
T 1rhf_A 178 TVHL 181 (182)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6665
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-11 Score=79.34 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=61.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEE--CCcccccc--ccCCeEec-C--CeEEEEecC-CCCCeeeEEEEeeeC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH--NNKTLHHN--IAQGIIMT-N--QSLVLQRVN-RQSAGNYTCVGFNIE 83 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~--~~~~~~~~--~~~~~~~~-~--~~l~i~~~~-~~d~g~Y~C~~~~~~ 83 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++ ++..+... ........ + ..|.|.+++ .+|.|.|.|.+.|..
T Consensus 99 ~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~ 177 (190)
T 2wv3_A 99 KRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177 (190)
T ss_dssp CSEEEEETTSCEEEEEEEECSSCC-EEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSS
T ss_pred CCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecC
Confidence 445567899999999999999888 999999 66665421 11111111 2 269999999 799999999999988
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
|.. ...+.|.|.
T Consensus 178 g~~-~~~~~l~V~ 189 (190)
T 2wv3_A 178 GSA-SVSTVLRVR 189 (190)
T ss_dssp CEE-EEEEEEEEE
T ss_pred Ccc-eeEEEEEEE
Confidence 865 445666654
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.8e-12 Score=83.72 Aligned_cols=81 Identities=20% Similarity=0.386 Sum_probs=62.3
Q ss_pred CCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCcccccc-------ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 13 NPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHN-------IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+... ........+++|.|.+++.+|.|.|+|.+.|..|
T Consensus 116 ~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G 194 (217)
T 2vr9_A 116 KDTRVAKGETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194 (217)
T ss_dssp CCEEECTTSCEEECCBCCCEESCC-EEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred CccEEcCCCeEEEEEECCCCCCCC-eEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccc
Confidence 44567889999999998 788877 99999999887732 1122234567899999999999999999999988
Q ss_pred CCccceEEEE
Q psy10918 85 DGESNAFFLN 94 (207)
Q Consensus 85 ~~~~~~~~l~ 94 (207)
...+....|.
T Consensus 195 ~~~~~~~~lv 204 (217)
T 2vr9_A 195 TRESSYAKLI 204 (217)
T ss_dssp EEECCCEEEE
T ss_pred eeccccEEEE
Confidence 7655444343
|
| >2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=79.33 Aligned_cols=156 Identities=10% Similarity=0.050 Sum_probs=88.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---c-cccc-----cCCeEec------CCeEEEEecCCCCCee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---L-HHNI-----AQGIIMT------NQSLVLQRVNRQSAGN 74 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~-~~~~-----~~~~~~~------~~~l~i~~~~~~d~g~ 74 (207)
+....+.+|++++|.|...+.... .+.||+... . + .... ..++... ...|+|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~vtL~C~~s~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~ 84 (200)
T 2nw2_A 6 PTEMTATEGAIVQINCTYQTSGFN-GLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSAS 84 (200)
T ss_dssp CSEEEEETTCCEEEEEECCCSSCC-CEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred CCeEEEccCCCEEEEEEECCCCCc-eEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCc
Confidence 556678899999999998765544 799998431 1 1 1000 1222221 1369999999999999
Q ss_pred eEEEEeee--CC-CCccceEEEEEEeCCcccCCCCceeee-eeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEE
Q psy10918 75 YTCVGFNI--EG-DGESNAFFLNVMYSPTCKPHQQRVLGV-ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHI 150 (207)
Q Consensus 75 Y~C~~~~~--~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 150 (207)
|+|.+.+. .+ ........|.|...... ..+..... .....++|.|.+.+..+.+.+. ++.. .. ..
T Consensus 85 Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v~---~~~~-----~~-~~ 153 (200)
T 2nw2_A 85 YLCAVQASGGSYIPTFGRGTSLIVHPYIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVS---QSKD-----SD-VY 153 (200)
T ss_dssp EEEEEC---CCCCCEECCCEEEEEECCCSS--CCCEEEEEEECC--CCEEEEEESCCTTCCCC---CCSS-----SS-EE
T ss_pred EEEEEEcCCcceeeeeCCCEEEEEecCccc--CCCeEEEcCCCCCCceEEEEeecccCCcEee---cccc-----cc-eE
Confidence 99998752 11 11112346777642110 11111111 1223789999999987754542 1111 01 11
Q ss_pred eecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 151 LRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 151 ~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.. ....|.+...+..+.|.|.|.+.|.++
T Consensus 154 ~t--~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (200)
T 2nw2_A 154 IT--DKCVLDMRSMDFKSNSAVAWSNKSDFA 182 (200)
T ss_dssp EC--CCEEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred ec--CchhhhhhhcccccccceeccCCCceE
Confidence 11 122455666666777899998888765
|
| >3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=83.08 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=80.2
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc------cc----cc-CCeEec------CCeEEEEec
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH------HN----IA-QGIIMT------NQSLVLQRV 67 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~------~~----~~-~~~~~~------~~~l~i~~~ 67 (207)
.+.+.+....+.+|++++|.|........ .+.||+. +..+. .. .. .++... ...|+|.++
T Consensus 11 ~V~Qsp~~v~v~~G~sVtL~C~~s~~~~~-~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~l 89 (226)
T 3tjh_C 11 SVTQPDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 89 (226)
T ss_dssp EEECSCSEEEEETTSCEEECCEEEESSCE-EEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSC
T ss_pred EEEEeCCEEEEEcCCCEEEEEEEecCCCC-eEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecC
Confidence 45566666778999999999998765444 8999994 22111 00 01 222211 135999999
Q ss_pred CCCCCeeeEEEEeeeC--C-CCccceEEEEEEeCCcccCCCCceeeee-eCCcEEEEEEeccCCCCceEEEEEcCceeee
Q psy10918 68 NRQSAGNYTCVGFNIE--G-DGESNAFFLNVMYSPTCKPHQQRVLGVA-RQEKVNISCEVDANPPDVKFSWTFNNSAETV 143 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~--~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~ 143 (207)
+.+|+|.|+|.+.... . ...-....|.|...... ..+...... ....++|.|.+.+..++.++.|.+++..+..
T Consensus 90 q~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~ 167 (226)
T 3tjh_C 90 HWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 167 (226)
T ss_dssp CGGGCEEEEEEEEESSCSSSEEECCCEEEEEECCCSS--CCCEEEEEEECC---CEEEEEESCCTTCCCCCCSCTTEEEC
T ss_pred CcccCCCEEEEEEecCCccccccCCCeEEEEeCCCCC--CCCEEEEcccCCCCeEEEEEcccccCCcEEEeeccCceeec
Confidence 9999999999987421 1 01112345677643111 111111111 1134789999999766889999998876543
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=80.29 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=54.1
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEe---cCCeEEEEecCCCCCeeeEEEEeeeCCC----C
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIM---TNQSLVLQRVNRQSAGNYTCVGFNIEGD----G 86 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~----~ 86 (207)
..+.+|++++|.|.+.+. .+ .+.|++++..+....... ... ....|.|.+++.+|.|.|.|.+.|..+. .
T Consensus 110 ~~v~~G~~v~L~C~~~~~-~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~ 187 (198)
T 1ugn_A 110 PVVNSGGNVTLQCDSQVA-FD-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSL 187 (198)
T ss_dssp SEEETTCCEEEEEECSSC-CS-EEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECC
T ss_pred cccCCCCcEEEEEecCCC-Cc-EEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccC
Confidence 568899999999999887 45 999999998764322111 111 1367999999999999999999987542 2
Q ss_pred ccceEEEEEE
Q psy10918 87 ESNAFFLNVM 96 (207)
Q Consensus 87 ~~~~~~l~v~ 96 (207)
.+..+.|.|.
T Consensus 188 ~S~~~~l~V~ 197 (198)
T 1ugn_A 188 PSDLLELLVL 197 (198)
T ss_dssp CCCCEEEEEE
T ss_pred cCceEEEEec
Confidence 2556666654
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-12 Score=84.77 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=63.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.................|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~ 105 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 105 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred eeEEEccCCCEEEEEecccCCCC-eEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccccc
Confidence 44567899999999999998887 99999998775432211111112223469999999999999999999998877666
Q ss_pred eEEEEee
Q psy10918 187 CVFHIVS 193 (207)
Q Consensus 187 ~~~~v~~ 193 (207)
..+.|..
T Consensus 106 ~~l~V~~ 112 (231)
T 3ojm_B 106 YHLDVVE 112 (231)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 6665554
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=80.95 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=59.4
Q ss_pred eeeeCCcEEEEEE---eccCCCCceEEEEEcCceeeecc----------------ceeEEeecCceEEEEEecCCCCCCe
Q psy10918 110 GVARQEKVNISCE---VDANPPDVKFSWTFNNSAETVNV----------------AQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 110 ~~~~g~~~~l~C~---~~~~~~~~~~~W~~~~~~~~~~~----------------~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
.+..|+.++|.|. +.+.|.+ .+.|++++....... .............|.|.+++.+|+|
T Consensus 4 ta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 4 TAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp EEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 4678999999995 4566776 999999875422110 0122333455667999999999999
Q ss_pred EEEEEEecCCCCCccceEEEEe
Q psy10918 171 TLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 171 ~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|+|.|.|..|.....+.+.|.
T Consensus 83 ~Y~C~a~n~~g~~~~~~~l~V~ 104 (203)
T 4fa8_A 83 NYLCRMKLGETEVTKQEHLSVV 104 (203)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEEEEec
Confidence 9999999998877666666554
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=79.72 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=48.6
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+.+|+.+.|.|.+.+ +.+ .+.|++++... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~~-----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 77 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVD-LYRLEKLSSSR-----------YQDQAVLFIPAMKRSLAGRYRCSYQNGSLW 77 (184)
T ss_dssp EEETTCCEEEEEECST-TCS-EEEEEETTTCC-----------EESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred cccCCCcEEEEEeCCC-CCC-EEEEEECCccc-----------cCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence 5679999999999987 555 99999988651 112235899999999999999999998763
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=81.31 Aligned_cols=82 Identities=18% Similarity=0.381 Sum_probs=62.4
Q ss_pred CCcccCCCcEEEEeE-eccCCCCcEEEEEECCc-cccccccC-------CeE--ecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 14 PDHIKEDSDVYFDCD-IVAVPPVYKVEWRHNNK-TLHHNIAQ-------GII--MTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~-~~~~~~~~~i~W~~~~~-~~~~~~~~-------~~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
...+.+|+++.|.|. +.+.|.+ .+.|++++. .+...... ... ..+..|.|.+++.+|.|.|+|.+.|.
T Consensus 113 ~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 191 (212)
T 1f97_A 113 PSSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191 (212)
T ss_dssp CSEEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred ccccCCCCeEEEEEEcccCcCCC-EEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccc
Confidence 346788999999999 6888877 999999998 77653221 111 23567999999999999999999999
Q ss_pred CCCC-ccceEEEEEE
Q psy10918 83 EGDG-ESNAFFLNVM 96 (207)
Q Consensus 83 ~~~~-~~~~~~l~v~ 96 (207)
.|.. .+..+.|.|.
T Consensus 192 ~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 192 YGTAMRSEAAHMDAV 206 (212)
T ss_dssp SSCCEECCCEEEEEE
T ss_pred cCCccccceEEEEEE
Confidence 8877 4556677766
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=78.71 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=59.3
Q ss_pred CCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 13 NPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
....+.+|+++.|.|.+.+ .+.+ .+.|++++..+... ..+..|.|.+++.+|.|.|+|.+.|..|...+..+
T Consensus 93 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~ 165 (170)
T 3ry4_A 93 PHLEFQEGETIMLRCHSWKDKPLV-KVTFFQNGKSQKFS------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPV 165 (170)
T ss_dssp SCSEECTTCCEEEEEEEGGGCCEE-EEEEEETTEEEEEE------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CCceeecCCeEEEEEECCCCCCCc-eEEEEECCeEcccc------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccE
Confidence 3456778999999999954 4544 99999999876531 23567999999999999999999998876556666
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 166 ~l~V 169 (170)
T 3ry4_A 166 TITV 169 (170)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=76.77 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEE-cCceeeeccceeEEe-ecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTF-NNSAETVNVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+.+|+.+.|.|.+.+.++...+.|++ ++..+.......... .......|.|.+++.+|+|.|+|.+.|..+
T Consensus 11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 86 (191)
T 1epf_A 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG 86 (191)
T ss_dssp SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCC
Confidence 34578999999999999987434999999 776654333333322 234566799999999999999999999874
|
| >3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-12 Score=84.33 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=80.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccc----c----ccCCeEec------CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHH----N----IAQGIIMT------NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~----~----~~~~~~~~------~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|...+. .. .+.||+.. ..... . ...++... ..+|+|.+++.+|
T Consensus 4 V~Q~p~~v~v~~G~sVtL~C~~s~~-~~-~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~D 81 (229)
T 3mbe_C 4 VEQNPPALSLYEGADSGLRCNFSTT-MK-SVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLED 81 (229)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC-CS-CEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTT
T ss_pred EEEcCCEEEEEcCCCEEEEEEEeCC-Cc-EEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccC
Confidence 4456677788999999999999776 44 89999842 21110 0 01122111 1359999999999
Q ss_pred CeeeEEEEeeeC-CC--CccceEEEEEEeCCcccCCCCceeeee-eCCcEEEEEEeccCCCCceEEEEEcCcee
Q psy10918 72 AGNYTCVGFNIE-GD--GESNAFFLNVMYSPTCKPHQQRVLGVA-RQEKVNISCEVDANPPDVKFSWTFNNSAE 141 (207)
Q Consensus 72 ~g~Y~C~~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~~~W~~~~~~~ 141 (207)
+|.|+|.+.... .. .......|.|...... ..+...... ....++|.|.+.+..+..++.|.+++...
T Consensus 82 SG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~--p~P~Vf~~~~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~ 153 (229)
T 3mbe_C 82 SGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQN--PEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTF 153 (229)
T ss_dssp CBEEEEEEECSSSTTCEEECCCCEEEEECCCSS--CCCEEEEEECTTCTTCEEEEEESCCSSSCCCCCCSSSEE
T ss_pred CCCEEEEEEeCCCcccceeCCCEEEEEecccCC--CCCEEEEccCCCCCEEEEEEccccCCceEeEeeccCceE
Confidence 999999987421 10 1122235777643111 111111111 12358999999998778899999987654
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-12 Score=84.09 Aligned_cols=74 Identities=19% Similarity=0.416 Sum_probs=57.9
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEec-CCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRV-NRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+|++++|.|. +.|.+ .+.|++++..+.... ...+...++.|.|.++ +..|+|.|+|.+.|..|...+..+.|++
T Consensus 127 ~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 127 SGTTVILTCP--QYPGS-EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ETTEEEEECS--CCCSS-CEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred cCCcEEEEcC--CCCCC-ceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 8999999999 66776 899999998876432 2233345789999999 9999999999999988864455555554
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=72.44 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=54.9
Q ss_pred CcccCCCcEEEEeEe-ccCCCCc---EEEEEECCccccc-----------cccCCeEe-c--------CCeEEEEecCCC
Q psy10918 15 DHIKEDSDVYFDCDI-VAVPPVY---KVEWRHNNKTLHH-----------NIAQGIIM-T--------NQSLVLQRVNRQ 70 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~-~~~~~~~---~i~W~~~~~~~~~-----------~~~~~~~~-~--------~~~l~i~~~~~~ 70 (207)
..+.+|++++|.|.+ .+.+.+. .+.|++++....- ....+... . +.+|.|.+++.+
T Consensus 10 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~ 89 (118)
T 3udw_C 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE 89 (118)
T ss_dssp EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGG
T ss_pred EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChH
Confidence 667889999999998 4444332 4999997532110 00111111 1 457999999999
Q ss_pred CCeeeEEEEeeeCCCCccceEEEEEEeCC
Q psy10918 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSP 99 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~ 99 (207)
|+|.|+|.+.+.........+.|.|..+|
T Consensus 90 D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P 118 (118)
T 3udw_C 90 DEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118 (118)
T ss_dssp GCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred HCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence 99999999987332233556677777543
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=83.09 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc----------------------CCeEe-cCCeEEEEecCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA----------------------QGIIM-TNQSLVLQRVNRQ 70 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~----------------------~~~~~-~~~~l~i~~~~~~ 70 (207)
...+.+|+++.|.|.+.+.|.+ .+.|++++..+..... ..... ....|.|.+++.+
T Consensus 145 ~~~v~~g~~v~L~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 223 (250)
T 2fbo_J 145 VVQVDEGNDITMTCPCTDCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT 223 (250)
T ss_dssp EEECCTTCCEEECCCEESCTTC-EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG
T ss_pred eEEecCCCcEEEEEEecCCCCC-eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc
Confidence 3455679999999999998888 9999999887654210 11111 3468999999999
Q ss_pred CCeeeEEEEeeeCCCCcc
Q psy10918 71 SAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 71 d~g~Y~C~~~~~~~~~~~ 88 (207)
|+|.|+|.+.|..|...+
T Consensus 224 D~G~Y~C~a~N~~g~~g~ 241 (250)
T 2fbo_J 224 DAGRVWCELATGQGELDA 241 (250)
T ss_dssp GCEEEEEEEESSSSGGGE
T ss_pred cCEEEEEEecCCccccCc
Confidence 999999999997765433
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=78.59 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=57.0
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.+|+.+.|.|.+.+.+. .+.|++++..+.... ...........|.|.+++.+|+|.|+|.|.|..|....+..+
T Consensus 15 ~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~ 90 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDT--QNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPL 90 (196)
T ss_dssp EEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEE--ECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCE
T ss_pred cccCCCeEEEEEeCCCCCc--EEEEEECCCCCCccc--ccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccE
Confidence 5679999999999987643 999999987643211 001123345679999999999999999999987643323333
Q ss_pred EEeecc
Q psy10918 190 HIVSAV 195 (207)
Q Consensus 190 ~v~~~~ 195 (207)
.+.+..
T Consensus 91 ~l~V~~ 96 (196)
T 2d3v_A 91 ELVVTG 96 (196)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 344433
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=80.72 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=54.8
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceE--EEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLS--VVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
.+.+|+.++|.|.+.+ +.+ .+.|+|+|..+..... ......... .|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 19 ~v~~G~~vtL~C~~~~-~~~-~~~W~k~g~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~ 94 (218)
T 1uct_A 19 VIPLDGSVKIQCQAIR-EAY-LTQLMIIKNSTYREIG--RRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD 94 (218)
T ss_dssp EEETTCCEEEEECCCT-TCS-EEEEEEEETTEEEECS--EECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECC
T ss_pred ccCCCCCEEEEEEcCC-CCC-EEEEEECCCccccccc--ccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecC
Confidence 5679999999999986 554 9999999876532211 111112223 699999999999999999999765332233
Q ss_pred EEEEeecc
Q psy10918 188 VFHIVSAV 195 (207)
Q Consensus 188 ~~~v~~~~ 195 (207)
.+.+.+.+
T Consensus 95 ~~~l~V~~ 102 (218)
T 1uct_A 95 TLELVVTG 102 (218)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEcC
Confidence 34444443
|
| >1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=81.15 Aligned_cols=165 Identities=13% Similarity=0.148 Sum_probs=88.1
Q ss_pred eeeecCCCcccCCCcEEEEeEecc-CCCCcEEEEEECC--cc---c-ccc----ccCCeEec------CCeEEEEecCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNN--KT---L-HHN----IAQGIIMT------NQSLVLQRVNRQ 70 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~--~~---~-~~~----~~~~~~~~------~~~l~i~~~~~~ 70 (207)
+.+ +....+.+|++++|.|...+ .... .+.||+.. .. + ... ...++... ...|+|.+++.+
T Consensus 3 v~Q-p~~~~v~~G~~v~L~C~~s~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~ 80 (206)
T 1kgc_D 3 TTQ-PNSMESNEEEPVHLPCNHSTISGTD-YIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLR 80 (206)
T ss_dssp EEC-CSEEEEETTSCEEEEEEESCCCTTC-CEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGG
T ss_pred EEC-CCeEEEcCCCCEEEEEEEcCCCCCc-cEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEECCCCcc
Confidence 445 56677899999999999866 3333 79999843 11 1 100 01122221 126999999999
Q ss_pred CCeeeEEEEeeeC----C-CCccceEEEEEEeCCcccCCCCceeee-eeCCcEEEEEEeccCCCCceEEEEEcCceeeec
Q psy10918 71 SAGNYTCVGFNIE----G-DGESNAFFLNVMYSPTCKPHQQRVLGV-ARQEKVNISCEVDANPPDVKFSWTFNNSAETVN 144 (207)
Q Consensus 71 d~g~Y~C~~~~~~----~-~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~ 144 (207)
|+|.|+|.+.+.. . ........|.|...+... .+..... .....++|.|.+.+..+...+ ..+......
T Consensus 81 Dsg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~--~P~V~~~~~~~~~v~L~C~~~g~~P~~~V---~~~~~~~~~ 155 (206)
T 1kgc_D 81 DAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNP--DPAVYQLRDSKSSDKSVCLFTDFDSQTNV---SQSKDSDVY 155 (206)
T ss_dssp GCEEEEEECCCCSTTCCCCCCCCCCEEEEEECCCSSC--CCEEEECCCCTTCCCEEEEEESCCTTCCC---CCCSCTTCE
T ss_pred cCccEEEEEecccCCCcccceECCCEEEEEeCCCCCC--CCeEEeecCCCCCeEEEEEeeceeccccc---ccCCCCcee
Confidence 9999999987531 1 111223467776432111 1111110 112478999999986443366 222221111
Q ss_pred cceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 145 VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 145 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
..............+.+....+.+...|+|.+...
T Consensus 156 ~t~~~~~~~~gly~~s~~~~~w~~~~~~tC~v~~~ 190 (206)
T 1kgc_D 156 ITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFN 190 (206)
T ss_dssp ECCCEEEEEGGGTEEEEEEEEEECCSSCCHHHHTT
T ss_pred ccCCceecccCceEeecCHHHcCCCCceEEEEeeC
Confidence 01111111122222334444445667899998653
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.21 E-value=9e-11 Score=80.53 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC--CCCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE--GDGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~--~~~~~~~~ 91 (207)
...+.+|++++|.|.+.+.+ + .+.|+|++..+... ......+..|.|.+++..|+|.|+|.+.+.. ....+..+
T Consensus 110 ~~~v~~G~~vtL~C~~~~~~-~-~~~w~k~g~~~~~~--~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~ 185 (242)
T 1p6f_A 110 GPEVISGEKVTFYCRLDTAT-S-MFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPV 185 (242)
T ss_dssp CSEEETTCEEEEEEECTTSC-S-EEEEEECSSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCE
T ss_pred CCccCCCCcEEEEEecCCCC-C-EEEEEECCCccCcc--ccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCE
Confidence 34678999999999987653 4 89999999776531 1111234579999999999999999999864 33456778
Q ss_pred EEEEEeCCc
Q psy10918 92 FLNVMYSPT 100 (207)
Q Consensus 92 ~l~v~~~~~ 100 (207)
.|.|...+.
T Consensus 186 ~l~V~~~~~ 194 (242)
T 1p6f_A 186 KLLVTGDIE 194 (242)
T ss_dssp EEEEEC---
T ss_pred EEEEeccCC
Confidence 888886443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=92.78 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=63.2
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc--ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
....+.+|+++.|.|.+.|.|.+ .+.|++++..+... ........+++|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 393 ~~~~v~~G~~v~l~C~~~g~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~ 470 (477)
T 2id5_A 393 QQVFVDEGHTVQFVCRADGDPPP-AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND-SMP 470 (477)
T ss_dssp EEEEEETTCCEEECCCEEEESCC-EEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEE-EEE
T ss_pred ccEEEeCCCeEEEEEeccccCCC-EEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcE-EEE
Confidence 44568899999999999999988 99999999877531 222333446789999999999999999999988765 445
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
+.|.|.
T Consensus 471 ~~l~V~ 476 (477)
T 2id5_A 471 AHLHVR 476 (477)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666654
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=78.37 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=57.9
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC--CCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG--DGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~--~~~~~~~ 91 (207)
...+.+|++++|.|.+.+. .+ .+.|+|++..+... ......+..|.|.+++.+|+|.|+|.+.|... ...+..+
T Consensus 107 ~~~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~ 182 (188)
T 1oll_A 107 GPEVISGEKVTFYCRLDTA-TS-MFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPV 182 (188)
T ss_dssp CSEEETTCEEEEEEECSSS-CS-EEEEEEESSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCE
T ss_pred CCccccCCEEEEEEEcCCC-CC-EEEEEECCcccccc--ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcE
Confidence 3567899999999998764 34 89999999776531 11122346799999999999999999998642 3345666
Q ss_pred EEEEE
Q psy10918 92 FLNVM 96 (207)
Q Consensus 92 ~l~v~ 96 (207)
.|.|.
T Consensus 183 ~l~V~ 187 (188)
T 1oll_A 183 KLLVT 187 (188)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66654
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=71.16 Aligned_cols=84 Identities=11% Similarity=0.196 Sum_probs=57.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeee---ccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETV---NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
....+.+|+.+.|.|.+.+. + .+.|+++. ..... ...+..+..++....|.|.+++.+|+|.|.|.+.|..|
T Consensus 25 ~~~~v~~G~~v~L~C~~~~~--~-~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g 101 (133)
T 3khq_A 25 RFAAKKRSSMVKFHCYTNHS--G-ALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSA 101 (133)
T ss_dssp SEEEECTTCCEEEEEEESSS--S-CEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred ceEEEeCCCeEEEEEEeCCC--C-EEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence 33456789999999999987 5 99999973 22111 12334444455667899999999999999999999865
Q ss_pred C----CccceEEEEee
Q psy10918 182 H----QRVPCVFHIVS 193 (207)
Q Consensus 182 ~----~~~~~~~~v~~ 193 (207)
. ......+.|..
T Consensus 102 ~~~~~~g~gt~L~V~~ 117 (133)
T 3khq_A 102 NHNVTDSCGTELLVLG 117 (133)
T ss_dssp ------CCCEEEEEC-
T ss_pred CcceeECCCEEEEEEe
Confidence 2 23344555543
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=74.88 Aligned_cols=89 Identities=15% Similarity=0.307 Sum_probs=58.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCC---cEEEEEECCcc-------cc------------ccccCCeEec------
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPV---YKVEWRHNNKT-------LH------------HNIAQGIIMT------ 58 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~---~~i~W~~~~~~-------~~------------~~~~~~~~~~------ 58 (207)
.+...+....+.+|++++|.|.+.+.+.. ..+.|++++.. +. .....+....
T Consensus 7 ~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 86 (126)
T 1eaj_A 7 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS 86 (126)
T ss_dssp EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred EEECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccC
Confidence 33344455678899999999998765432 36999996521 10 0001122221
Q ss_pred -CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 59 -NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 59 -~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
..+|.|.+++..|+|.|.|.+.+..+.. ...+.|.|.
T Consensus 87 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~ 124 (126)
T 1eaj_A 87 GDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL 124 (126)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred CeEEEEECcCChHHCeEEEEEEEcCCccC-CcEEEEEEE
Confidence 2569999999999999999998765533 446667665
|
| >2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ... | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-11 Score=71.81 Aligned_cols=75 Identities=9% Similarity=0.228 Sum_probs=52.9
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---cc-c------cccCCeEec----CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---LH-H------NIAQGIIMT----NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~~-~------~~~~~~~~~----~~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.|++... . +. . ....++... ..+|+|.+++.+
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 83 (109)
T 2q20_A 5 QMTQSPSSLSASVGDRVTITCQASQDISN-YLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE 83 (109)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred cEEeeCCEEEecCCCcEEEEEeeccCCCC-cEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh
Confidence 44556677788999999999999877655 899999641 1 10 0 001122211 236999999999
Q ss_pred CCeeeEEEEeee
Q psy10918 71 SAGNYTCVGFNI 82 (207)
Q Consensus 71 d~g~Y~C~~~~~ 82 (207)
|+|.|.|.+.+.
T Consensus 84 DsG~Y~C~~~~~ 95 (109)
T 2q20_A 84 DIATYYCQQYDN 95 (109)
T ss_dssp GCEEEEEEECSS
T ss_pred hCEEEEEEEeeC
Confidence 999999999864
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=81.94 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=61.9
Q ss_pred CcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccC---------CeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 15 DHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQ---------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..+.+|+++.|.|.+ .+.|.+ .+.|++++..+...... .....+..|.|.+++.+|.|.|+|.+.|..|
T Consensus 117 ~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 195 (209)
T 1nbq_A 117 SSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195 (209)
T ss_dssp SEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred cceecCCEEEEEEeCCCCCCCc-eeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcC
Confidence 457889999999997 788877 99999999887653221 1112356899999999999999999999988
Q ss_pred CC-ccceEEEEEE
Q psy10918 85 DG-ESNAFFLNVM 96 (207)
Q Consensus 85 ~~-~~~~~~l~v~ 96 (207)
.. .+..+.|.|.
T Consensus 196 ~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 196 TPMTSNAVRMEAV 208 (209)
T ss_dssp CCEECCCBCCEEE
T ss_pred cccccccEEEEEe
Confidence 76 3445555543
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=80.05 Aligned_cols=60 Identities=18% Similarity=0.429 Sum_probs=49.8
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+|+++.|.|.+ |.+ .+.|+|++..+..... .+..|.|.+++.+|+|.|+|.+.|..|.
T Consensus 119 ~~~G~~v~l~C~~---p~p-~i~W~k~g~~i~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDK-TIKWLKDGSIISPLNA-----TKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp CSSSCEEEEECSS---SCS-CEEEEETTEECCCSSC-----CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred cCCCCeEEEEeeC---CCC-eEEEEECCEECcccCC-----CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 4489999999998 556 9999999998764221 4578999999999999999999987653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=91.02 Aligned_cols=83 Identities=19% Similarity=0.400 Sum_probs=61.7
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc--eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA--QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+....+.+|+.+.|.|.+.|.|.| .+.|++++........ +.....++ .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 391 ~~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~g~ 466 (477)
T 2id5_A 391 KAQQVFVDEGHTVQFVCRADGDPPP-AILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGTYLCIAANAGGN 466 (477)
T ss_dssp SCEEEEEETTCCEEECCCEEEESCC-EEEEECTTSCBC-------CEECTTS---CEEESSCCSTTCEEEEEEEEETTEE
T ss_pred ccccEEEeCCCeEEEEEeccccCCC-EEEEEECCccccccCCCceEEeCCCC---EEEEeeCChHHCEEEEEEEEeCCCc
Confidence 3455567899999999999999987 9999998876542211 12222222 4899999999999999999999998
Q ss_pred CccceEEEE
Q psy10918 183 QRVPCVFHI 191 (207)
Q Consensus 183 ~~~~~~~~v 191 (207)
.+..+.+.|
T Consensus 467 ~~~~~~l~V 475 (477)
T 2id5_A 467 DSMPAHLHV 475 (477)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 766655544
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=76.99 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=59.3
Q ss_pred eeeeeCCcEEEEEEeccCCC----CceEEEEEcCceeeeccceeEEeecC---ceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 109 LGVARQEKVNISCEVDANPP----DVKFSWTFNNSAETVNVAQAHILRSG---TLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..+..|+.+.|.|.+.+.|. .+.+.|++++........+..+..+. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 12 v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 91 (202)
T 3bp6_B 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA 91 (202)
T ss_dssp EEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred EEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCC
Confidence 45679999999999998765 13999999433322222222332221 346799999999999999999999887
Q ss_pred CCccceEEEEeecccCCCC
Q psy10918 182 HQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 182 ~~~~~~~~~v~~~~~~~~p 200 (207)
..... +.+.+..++..|
T Consensus 92 ~~~~~--~~l~V~~~~~~p 108 (202)
T 3bp6_B 92 WDYKY--LTVKVKASYMRI 108 (202)
T ss_dssp EEEEE--EEEEEEBCCCCE
T ss_pred cceEE--EEEEecCCCCcc
Confidence 66444 444444444333
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=71.97 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=60.0
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCC--CcEEEEEECCcc--cc--c-c----------ccCCeEec-------CCe
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPP--VYKVEWRHNNKT--LH--H-N----------IAQGIIMT-------NQS 61 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~~~~--~~--~-~----------~~~~~~~~-------~~~ 61 (207)
+.+..+.....+.+|++++|.|.+.+.+. ...+.|++++.. +. . . ...+.... +.+
T Consensus 7 ~~V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~s 86 (139)
T 1pko_A 7 FRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA 86 (139)
T ss_dssp CEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEE
T ss_pred EEEECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEE
Confidence 44445555677899999999999875432 238999997641 10 0 0 01122111 246
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..
T Consensus 87 L~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~~ 121 (139)
T 1pko_A 87 LRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVED 121 (139)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred EEEccCCHHHCEEEEEEEEcCCCce-EEEEEEEEec
Confidence 9999999999999999999776533 4567788874
|
| >1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=70.88 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=52.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---cc-c------cccCCeEec----CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---LH-H------NIAQGIIMT----NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~~-~------~~~~~~~~~----~~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.|++... . +. . ....++... ..+|+|.+++.+
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (108)
T 1qfw_M 3 ELTQSPKSMSMSVGERVTLSCKASETVDS-FVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAE 81 (108)
T ss_dssp CEEEECSCEECCTTCCEEEEEEESSCCCS-CEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTT
T ss_pred cEEEeCCeEEEcCCCCEEEEeeeCCCCCc-EEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence 34556677788999999999999877655 899998541 1 10 0 001122211 136999999999
Q ss_pred CCeeeEEEEeee
Q psy10918 71 SAGNYTCVGFNI 82 (207)
Q Consensus 71 d~g~Y~C~~~~~ 82 (207)
|+|.|.|.+.+.
T Consensus 82 DsG~Y~C~~~~~ 93 (108)
T 1qfw_M 82 DFADYHCGQTYN 93 (108)
T ss_dssp CCSEEEEEECSS
T ss_pred hCEEEEEEEccC
Confidence 999999999864
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=92.00 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC---C-ccc
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD---G-ESN 89 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~---~-~~~ 89 (207)
...+.+|+++.|.|.+.+ +.+ .+.|++++.++...........+..|.|.+++..|+|.|.|.+.+..+. . ...
T Consensus 542 ~v~v~~g~~~~L~C~~~s-p~a-~v~W~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~ 619 (663)
T 1olz_A 542 QHFFKHGGTAELKCSQKS-NLA-RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 619 (663)
T ss_dssp EEEEETTSCEEECCCCSC-TTC-EEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred EEEEecCCcEEEEccCCC-CCC-cEEEEECCeeccccCcceEEecCCeEEEEecCcccCeEEEEEEEECccCCCceEEEE
Confidence 346778999999999988 766 9999999988765333333344678999999999999999999987322 1 135
Q ss_pred eEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEecc
Q psy10918 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125 (207)
Q Consensus 90 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 125 (207)
.+.|.|..+|.+...........+|+.++++|.+..
T Consensus 620 ~~~l~V~v~P~~~~~p~~~~~~~~g~~~~~~~~~~~ 655 (663)
T 1olz_A 620 KHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVAS 655 (663)
T ss_dssp EEEEEEEC----------------------------
T ss_pred EEEEEEEeCCccCCCCCChhhhhcCCceEEEeeccc
Confidence 677888888877665455556779999999998754
|
| >1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-10 Score=65.90 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=55.7
Q ss_pred ceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccc-----eeEEeecC--ceEEEEEecCCCCCCeEEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVA-----QAHILRSG--TLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
....+..|+.+.|.|.+.+ .+.| +++|.|.+...-.... .......+ ...+|.|.++..+|+|.|+|.|.|
T Consensus 22 S~~tv~~G~~~~LeCpv~yc~~rP-nVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~ 100 (122)
T 1xau_A 22 SKHSAWTGELFKIECPVKYCVHRP-NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF 100 (122)
T ss_dssp EEEEECTTSCEEEEEEEECSSSCC-CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred ccEEEecCCeEEEEeEecCCCCCC-cEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeC
Confidence 3445778999999999976 4566 9999996643221110 01111222 356799999999999999999999
Q ss_pred CCCCCccce
Q psy10918 179 KIGHQRVPC 187 (207)
Q Consensus 179 ~~g~~~~~~ 187 (207)
..|...+..
T Consensus 101 ~~g~ieSHs 109 (122)
T 1xau_A 101 NSQVINSHS 109 (122)
T ss_dssp TTEEEECCC
T ss_pred CCCceeeeE
Confidence 887655443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=89.21 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=63.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc---cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI---AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+....+.+|++++|.|.+ +.|.+ .+.|++++..+.... .......+++|.|.+++.+|+|.|+|.+.|..|..
T Consensus 346 ~~~~~~~v~~G~~v~L~C~~-~~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 423 (440)
T 3zyj_A 346 EPPADLNVTEGMAAELKCRA-STSLT-SVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNT 423 (440)
T ss_dssp ECCCCEEECTTSCCEECCEE-SSTTS-EEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCEE
T ss_pred ccccceeeccCceEEEEeec-CCCCC-ceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCcE
Confidence 34566778899999999999 45666 999999654443221 12223446789999999999999999999998876
Q ss_pred ccceEEEEEEeCCc
Q psy10918 87 ESNAFFLNVMYSPT 100 (207)
Q Consensus 87 ~~~~~~l~v~~~~~ 100 (207)
..++.+.|..+|.
T Consensus 424 -~~~~~~~v~~~~~ 436 (440)
T 3zyj_A 424 -TASATLNVTGTHH 436 (440)
T ss_dssp -EEEEEEEEC----
T ss_pred -EEEEEEEEecccc
Confidence 4466677765543
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=72.84 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=60.5
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc-cccc-----------cccCCeEe--cCCeEEEEecCCCCCeeeEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK-TLHH-----------NIAQGIIM--TNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~-~~~~-----------~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C 77 (207)
..+..+.+|++|+|.|..........+.|++... .+.. ....+... .+++|+|.+++.+|+|.|.|
T Consensus 11 ~~pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c 90 (121)
T 2edo_A 11 LVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIM 90 (121)
T ss_dssp CBCCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEE
T ss_pred cEEEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEE
Confidence 3456788999999999873222223899999763 1110 00112222 45689999999999999999
Q ss_pred EEeeeCCCCccceEEEEEEeCCccc
Q psy10918 78 VGFNIEGDGESNAFFLNVMYSPTCK 102 (207)
Q Consensus 78 ~~~~~~~~~~~~~~~l~v~~~~~~~ 102 (207)
.+.+..+......+.|.|..++..+
T Consensus 91 ~v~~~~~~~~~~~~~L~V~~~~~~P 115 (121)
T 2edo_A 91 RVLKKTGNEQEWKIKLQVLDPVPKP 115 (121)
T ss_dssp EEEETTTEEEECCEECEEECCSCCC
T ss_pred EEEcCCCcEEEEEEEEEEECCCCCC
Confidence 9986554344557788888655443
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-10 Score=75.51 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=55.7
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.+|+.+.|.|.+.|.|.| .+.|++.... .. . ......+....|.|.+++.+|+|.|.|.|.|..|..+..+.+
T Consensus 12 ~~~~G~~v~L~C~~~g~P~p-~i~W~~~~~~-~~--~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l 86 (202)
T 1vca_A 12 LAQIGDSVSLTCSTTGCESP-FFSWRTQIDS-PL--N-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (202)
T ss_dssp EEETTSCEEEEEEEESCSSC-EEEEEETTCC-CC--S-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEcCCCcEEEEEeecCCCCC-eEEEECCCCC-Cc--c-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence 34589999999999998887 8999984321 00 0 112223444569999999999999999999988765544444
Q ss_pred EEe
Q psy10918 190 HIV 192 (207)
Q Consensus 190 ~v~ 192 (207)
.|.
T Consensus 87 ~V~ 89 (202)
T 1vca_A 87 EIY 89 (202)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=80.30 Aligned_cols=169 Identities=11% Similarity=0.062 Sum_probs=90.9
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cc---cc-c-c------ccCCeEec------CCeEEEEec
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KT---LH-H-N------IAQGIIMT------NQSLVLQRV 67 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~---~~-~-~------~~~~~~~~------~~~l~i~~~ 67 (207)
.+.+.+....+.+|++++|.|...+......+.||+.. .. +. . . ...++... ...|+|.++
T Consensus 5 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~ 84 (211)
T 2ak4_D 5 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS 84 (211)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred ceEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECcc
Confidence 34455667788999999999998654333379999843 11 10 0 0 11122211 136999999
Q ss_pred CCCCCeeeEEEEeeeC--C-CCccceEEEEEEeCCcccCCCCceeee-eeCCcEEEEEEeccCCCCceEEEEEcCceeee
Q psy10918 68 NRQSAGNYTCVGFNIE--G-DGESNAFFLNVMYSPTCKPHQQRVLGV-ARQEKVNISCEVDANPPDVKFSWTFNNSAETV 143 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~--~-~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~ 143 (207)
+.+|+|.|+|.+.+.. . ........|.|....... .+..... .....++|.|.+.+..+...+.+...... ..
T Consensus 85 ~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~--~P~V~~~~~~~~~vtL~Cl~~gf~P~~~v~~~~~~~~-~~ 161 (211)
T 2ak4_D 85 QVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNP--DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDV-YI 161 (211)
T ss_dssp CGGGCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSC--CCEEEEEBCCSSSCCEEEEEESCCTTCCCCCCSSSSC-EE
T ss_pred ccccCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCC--CCEEEEccCCCCceEEEEEeeeecCCcccccccccce-Ee
Confidence 9999999999997532 1 111223457776432101 1111111 12347899999998544336622111110 00
Q ss_pred ccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 144 NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 144 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.. ..........+. .+....+.+...|+|.+....
T Consensus 162 t~-~~~~~~~~~~S~-t~~~~~w~~g~~~tC~V~~~~ 196 (211)
T 2ak4_D 162 TD-KCVLDMRSMDFK-SNSAVAWSNKSDFACANAFNN 196 (211)
T ss_dssp CC-CEEEEEGGGTEE-EEEEEEEECSTTCCTTSTTTT
T ss_pred cC-chhccccccccc-cccHHHccCCCceEEEEecCC
Confidence 00 001111111233 555666678889999887643
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=67.77 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=51.7
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eee-ec----------cceeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNS--AET-VN----------VAQAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~-~~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
..+.+|+.++|.|.+.+.+.+ .+.|+++.. ... +. ..+...........|.|.+++.+|+|.|.|.
T Consensus 11 ~~~~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 89 (108)
T 1jhl_L 11 LVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ 89 (108)
T ss_dssp EEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred eEEcCCCCEEEEeEECCCCCc-eEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEEEE
Confidence 456799999999999988866 999998642 111 00 1122233344556799999999999999999
Q ss_pred EecCC
Q psy10918 176 GSNKI 180 (207)
Q Consensus 176 ~~n~~ 180 (207)
+.|..
T Consensus 90 ~~n~~ 94 (108)
T 1jhl_L 90 QHNEY 94 (108)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 99863
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=88.97 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=61.8
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE---------ecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---------MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.+.+|+++.|.|.+.+.|.+ .+.|++++..+......... ...++|.|.+++..|+|.|+|.+.|..|..
T Consensus 257 ~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~ 335 (347)
T 2ifg_A 257 TAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335 (347)
T ss_dssp CCEESSSEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cCccCceEEEEEEeeecCCC-cEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce
Confidence 35679999999999999888 99999999888743221111 123569999999999999999999988865
Q ss_pred ccceEEEEEEeC
Q psy10918 87 ESNAFFLNVMYS 98 (207)
Q Consensus 87 ~~~~~~l~v~~~ 98 (207)
...+.|.|..+
T Consensus 336 -~~~~~l~V~~~ 346 (347)
T 2ifg_A 336 -SASIMAAFMDN 346 (347)
T ss_dssp -EEEEEECSCCC
T ss_pred -eeEEEEEecCC
Confidence 44666666544
|
| >2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=69.06 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=56.7
Q ss_pred eeeeeecCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCcc-ccc------------cccCCeEe--cCCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKT-LHH------------NIAQGIIM--TNQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~-~~~------------~~~~~~~~--~~~~l~i~~~~~ 69 (207)
++.........+.+|++++|.|.. .+.+.+ .+.|++.... +.. ....++.. ...+|+|.+++.
T Consensus 4 ~~~~~~~~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~ 82 (110)
T 2ptt_A 4 IRARGSIPDINAYTGSNVTLKIHKDPLGPYR-RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRK 82 (110)
T ss_dssp ----CCCCSEEEETTSCEEECSCSSCCCSCS-EEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCG
T ss_pred EEccCCCCCEEEecCCcEEEeCCccCCCCcC-EEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCc
Confidence 344455566788999999999998 555555 8999994321 110 00112322 356799999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+|+|.|.|.+.+.. .....+.|.|.
T Consensus 83 ~DsG~Y~C~v~~~~--~~~~~~~L~V~ 107 (110)
T 2ptt_A 83 EDKGTYYMRVLRET--ENELKITLEVF 107 (110)
T ss_dssp GGCEEEEEEEESSS--BCCEEEEEEEE
T ss_pred ccCeEEEEEEEcCC--CcEEEEEEEEE
Confidence 99999999997544 22335566665
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=76.47 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=58.5
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEE---CCcccc-ccccCCe-E-ecC--CeEEEEecC-CCCCeeeEEEEeee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRH---NNKTLH-HNIAQGI-I-MTN--QSLVLQRVN-RQSAGNYTCVGFNI 82 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~---~~~~~~-~~~~~~~-~-~~~--~~l~i~~~~-~~d~g~Y~C~~~~~ 82 (207)
....+.+|+++.|.|.+.+.| .+ .+.|++ ++..+. .....++ . ..+ ..|.|.+++ ..|.|.|.|.+.|.
T Consensus 91 ~~~~~~~g~~~~l~C~~~g~p~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~ 169 (184)
T 3b5h_A 91 SSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169 (184)
T ss_dssp SEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred CCcEEcCCCcEEEEEEECCCCCCC-eEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeC
Confidence 344578899999999999988 55 999999 444332 2111112 1 112 379999999 89999999999998
Q ss_pred CCCCccceEEEEEE
Q psy10918 83 EGDGESNAFFLNVM 96 (207)
Q Consensus 83 ~~~~~~~~~~l~v~ 96 (207)
.|.. ...+.|.|.
T Consensus 170 ~g~~-~~~~~l~V~ 182 (184)
T 3b5h_A 170 KGSD-QAIITLRVR 182 (184)
T ss_dssp TEEE-EEEEEEEEC
T ss_pred CCcc-eEEEEEEEe
Confidence 8865 334666654
|
| >1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-11 Score=69.00 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=56.9
Q ss_pred CcccCCCcEEEEeEecc-CCCCcEEEEEECCc----cccccccC---CeEecC----CeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNK----TLHHNIAQ---GIIMTN----QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~----~~~~~~~~---~~~~~~----~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+..|+.+.|.|.+.+ .+.| +++|.|.+. ++... .+ .....+ ..|.|.++...|+|.|+|.|.+.
T Consensus 24 ~tv~~G~~~~LeCpv~yc~~rP-nVtWcK~~~~~c~~L~~~-~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~ 101 (122)
T 1xau_A 24 HSAWTGELFKIECPVKYCVHRP-NVTWCKHNGTIWVPLEVG-PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101 (122)
T ss_dssp EEECTTSCEEEEEEEECSSSCC-CEEEEEECSSSEEECCCB-TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred EEEecCCeEEEEeEecCCCCCC-cEEEEecCCeeccccccc-eeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCC
Confidence 45778999999999966 5666 999999652 22211 11 011111 25899999999999999999998
Q ss_pred CCCCccceEEEEEE
Q psy10918 83 EGDGESNAFFLNVM 96 (207)
Q Consensus 83 ~~~~~~~~~~l~v~ 96 (207)
.|...+....|.|.
T Consensus 102 ~g~ieSHs~ti~V~ 115 (122)
T 1xau_A 102 SQVINSHSVTIHVR 115 (122)
T ss_dssp TEEEECCCEEEEEC
T ss_pred CCceeeeEEEEEEE
Confidence 77776766666654
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.7e-11 Score=82.55 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=59.3
Q ss_pred cCCCcccCCCcEEEEeEe---ccCCCCcEEEEEECCccc-ccc-----------------c--cCCeE------ecCCeE
Q psy10918 12 LNPDHIKEDSDVYFDCDI---VAVPPVYKVEWRHNNKTL-HHN-----------------I--AQGII------MTNQSL 62 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~---~~~~~~~~i~W~~~~~~~-~~~-----------------~--~~~~~------~~~~~l 62 (207)
+....+.+|+++.|.|.+ .+.|.+ .+.|++++... ... . ..+.. ..+.+|
T Consensus 125 p~~~~v~~G~~v~L~C~~~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 203 (268)
T 3mj6_A 125 PRDLRVRVGDTTQMRCSIQSTEEKRVT-KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI 203 (268)
T ss_dssp CSEEEEETTCCEEECCBCEESSSSCCC-EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCE
T ss_pred CCccccccCCcEEEEEEecCCCCCCcc-ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEE
Confidence 345678899999999999 566776 99999953321 100 0 00111 234679
Q ss_pred EEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCc
Q psy10918 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 63 ~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 100 (207)
.|.+++.+|+|.|+|.+.|..+.. ...+.|.|...+.
T Consensus 204 ~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~p 240 (268)
T 3mj6_A 204 KLQTVKESDQGIYTCSIYVGKLES-RKTIVLHVVQDEF 240 (268)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC--
T ss_pred EECcCChhhCeEEEEEEEcCCceE-EEEEEEEEEcCCC
Confidence 999999999999999999876654 5567777754443
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-10 Score=75.16 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=48.9
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+.+|+.++|.|.+.+ +.+ .+.|+|+|..+.................|.|.+++.+|+|.|+|.+.|.
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~ 85 (201)
T 1nkr_A 18 LVKSEETVILQCWSDV-MFE-HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT 85 (201)
T ss_dssp EEETTCCEEEEEEESS-CCS-EEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred ccCCCCcEEEEEeccC-CCC-EEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecC
Confidence 4679999999999974 555 9999999876432111111111223456999999999999999999875
|
| >1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=69.37 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=52.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cc---cc-c------cccCCeEe--c--CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KT---LH-H------NIAQGIIM--T--NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~---~~-~------~~~~~~~~--~--~~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.|++.. .. +. . ....++.. . ..+|+|.+++.+
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (107)
T 1i8k_A 3 ELTQSPASLSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE 81 (107)
T ss_dssp CEEEECSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred ceEeCCCeEEecCCCCEEEEEEECCCCCC-cEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHH
Confidence 34556677788999999999999877655 89999953 11 10 0 00112221 1 126999999999
Q ss_pred CCeeeEEEEeee
Q psy10918 71 SAGNYTCVGFNI 82 (207)
Q Consensus 71 d~g~Y~C~~~~~ 82 (207)
|+|.|.|.+.+.
T Consensus 82 DsG~Y~C~~~~~ 93 (107)
T 1i8k_A 82 DVGDYYCLQSFN 93 (107)
T ss_dssp GCEEEEEEECSS
T ss_pred HCEEEEEEEeeC
Confidence 999999999754
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.6e-11 Score=87.32 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=59.0
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-c--eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-A--QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+....+.+|+.++|.|.+ +.|+| .+.|+++++...... . +.....++ .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 348 ~~~~~v~~G~~v~L~C~~-~~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~ 422 (440)
T 3zyj_A 348 PADLNVTEGMAAELKCRA-STSLT-SVSWITPNGTVMTHGAYKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGN 422 (440)
T ss_dssp CCCEEECTTSCCEECCEE-SSTTS-EEEEECTTSCEEESSSCCSSEEECTTC---CEEESSCCSTTCEEEEEEEECSSCE
T ss_pred ccceeeccCceEEEEeec-CCCCC-ceEEEeCCCceeeccCCCceEEEccCC---eEEEccCChhhCEEEEEEEEcCCCc
Confidence 344567799999999999 56776 999999655433221 1 12222233 3999999999999999999999998
Q ss_pred CccceEEEEeecccCCCC
Q psy10918 183 QRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 183 ~~~~~~~~v~~~~~~~~p 200 (207)
.+.+ +.+.+.+.|.+|
T Consensus 423 ~~~~--~~~~v~~~~~~~ 438 (440)
T 3zyj_A 423 TTAS--ATLNVTGTHHHH 438 (440)
T ss_dssp EEEE--EEEEEC------
T ss_pred EEEE--EEEEEecccccc
Confidence 8655 445555666555
|
| >1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ... | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=71.27 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=59.0
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccc----cc------cccCCeEec----CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTL----HH------NIAQGIIMT----NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~----~~------~~~~~~~~~----~~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.||+.. ... .. ....++... ..+|+|.+++.+
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 81 (120)
T 1mqk_L 3 ELTQTPVSLSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE 81 (120)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred ceEecCCeEEEcCCCcEEEEEEeCCCCCc-eEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHH
Confidence 34456677788999999999999877655 89999953 211 00 001122221 236999999999
Q ss_pred CCeeeEEEEeeeC-CCCccceEEEEEE
Q psy10918 71 SAGNYTCVGFNIE-GDGESNAFFLNVM 96 (207)
Q Consensus 71 d~g~Y~C~~~~~~-~~~~~~~~~l~v~ 96 (207)
|+|.|.|.+.+.. .........|.|.
T Consensus 82 DsG~Y~C~~~~~~~~~~fg~gt~L~V~ 108 (120)
T 1mqk_L 82 DFGSYYCQHHYGTPPLTFGGGTKLEIK 108 (120)
T ss_dssp GCEEEEEEECSSSSSCCBCCCEEEEEC
T ss_pred HCEEEEEEEEeCCCceEECCCeEEEEe
Confidence 9999999998653 2222334456665
|
| >1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-10 Score=68.57 Aligned_cols=75 Identities=17% Similarity=0.343 Sum_probs=51.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc--------ccccCCeEe-cC------CeEEEEecCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH--------HNIAQGIIM-TN------QSLVLQRVNRQ 70 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~--------~~~~~~~~~-~~------~~l~i~~~~~~ 70 (207)
+.+.+....+.+|++++|.|.+.+.+ + .+.|++... .+. .....++.. .+ .+|.|.+++.+
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~-~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~ 81 (113)
T 1h5b_A 4 VEQSPSALSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE 81 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred eEECCCEEEEecCCcEEEEEEECCCC-c-eEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChh
Confidence 34556667789999999999998754 4 899998542 111 001111211 11 26999999999
Q ss_pred CCeeeEEEEeeeCC
Q psy10918 71 SAGNYTCVGFNIEG 84 (207)
Q Consensus 71 d~g~Y~C~~~~~~~ 84 (207)
|+|.|.|.+.+..+
T Consensus 82 DsG~Y~C~~~n~~~ 95 (113)
T 1h5b_A 82 DSGTYFCAAEASSG 95 (113)
T ss_dssp GCEEEEEEEECSSS
T ss_pred hCEEEEEEEecCCC
Confidence 99999999987654
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=71.82 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=57.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc--ccccCCeE--ecC--CeEEEEecCCCCCeeeEEEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH--HNIAQGII--MTN--QSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~--~~~~~~~~--~~~--~~l~i~~~~~~d~g~Y~C~~ 79 (207)
+.+.+....+.+|++++|.|.+.+. + .+.||++. ..+. .....++. ..+ .+|.|.+++.+|+|.|+|.+
T Consensus 20 v~q~p~~~~v~~G~~v~L~C~~~~~--~-~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a 96 (133)
T 3khq_A 20 IWQHPRFAAKKRSSMVKFHCYTNHS--G-ALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQ 96 (133)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSS--S-CEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEcCceEEEeCCCeEEEEEEeCCC--C-EEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEE
Confidence 4455677788999999999999876 4 89999973 2211 00111221 122 25999999999999999999
Q ss_pred eeeCCC---CccceEEEEEEeCCc
Q psy10918 80 FNIEGD---GESNAFFLNVMYSPT 100 (207)
Q Consensus 80 ~~~~~~---~~~~~~~l~v~~~~~ 100 (207)
.|..+. .......|.|...|.
T Consensus 97 ~n~~g~~~~~~g~gt~L~V~~~p~ 120 (133)
T 3khq_A 97 KCDSANHNVTDSCGTELLVLGFST 120 (133)
T ss_dssp SSCC-------CCCEEEEEC----
T ss_pred EeCCCCcceeECCCEEEEEEeccc
Confidence 877541 123455677765443
|
| >2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=70.61 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=52.6
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cc---cc-c------cccCCeEe--c--CCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KT---LH-H------NIAQGIIM--T--NQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~---~~-~------~~~~~~~~--~--~~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|.+.+.+.+ .+.|++.. .. +. . ....++.. . ..+|+|.+++.+
T Consensus 5 ~v~q~p~~v~v~~G~~vtL~C~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 83 (119)
T 2e27_L 5 QMTQSPSSLSASLGGKVTITCKANQDIKK-KIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPE 83 (119)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG
T ss_pred eeEecCCeEEEeCCCCEEEEEEeCCCCCc-eEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChH
Confidence 34556677788999999999999887655 89999953 11 10 0 00112221 1 236999999999
Q ss_pred CCeeeEEEEeee
Q psy10918 71 SAGNYTCVGFNI 82 (207)
Q Consensus 71 d~g~Y~C~~~~~ 82 (207)
|+|.|.|.+.+.
T Consensus 84 DsG~Y~C~~~~~ 95 (119)
T 2e27_L 84 DAATYYCLQYDN 95 (119)
T ss_dssp GCEEEEEEECGG
T ss_pred HCEEEEEEEccC
Confidence 999999999864
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=75.25 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=55.2
Q ss_pred eeeeCCcEEEEEEecc--CCCCceEEEEEcCceeee---------ccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 110 GVARQEKVNISCEVDA--NPPDVKFSWTFNNSAETV---------NVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~--~~~~~~~~W~~~~~~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.+.+|+.+.|.|.... .+.+ .+.|++++..+.. ...+..+..++ .|.|.+++.+|+|.|+|.|.|
T Consensus 7 ~~~~G~~v~L~c~~~~~~~~~~-~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~n 82 (176)
T 1hng_A 7 WGALGHGINLNIPNFQMTDDID-EVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS 82 (176)
T ss_dssp EEETTSCEEECCTTCCCCTTEE-EEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred EEEcCCcEEEcCCCCCcccccc-cEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEEe
Confidence 4568999999994333 3344 9999998864321 11222232222 299999999999999999999
Q ss_pred CCCCCccceEEEEeecccCC
Q psy10918 179 KIGHQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 179 ~~g~~~~~~~~~v~~~~~~~ 198 (207)
..|.......+.+.+..++.
T Consensus 83 ~~g~~~~~~~~~l~V~~~~~ 102 (176)
T 1hng_A 83 TNGTRILNKALDLRILEMVS 102 (176)
T ss_dssp TTCCEEEEEEEEEEEECCCC
T ss_pred CCCCEEEEEEEEEEEeCCCC
Confidence 98875223334444444433
|
| >3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=67.85 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=59.9
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe----EecCCeEEEEecCCCCCeeeEE
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI----IMTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C 77 (207)
|+.+|... +. ..+..|++|+|.|...... . .+.|+|++..+........ ......|.|..++..|+|.|+|
T Consensus 8 pkPsL~a~--P~-~vv~~G~~VtL~C~~~~~~-~-~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C 82 (106)
T 3kgr_A 8 PRPSISAE--PG-TVIPLGSHVTFVCRGPVGV-Q-TFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRC 82 (106)
T ss_dssp CCCEEEEE--SC-SEEETTCCEEEEEEECTTC-C-EEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEEe--CC-CccCCCCeEEEEEEccCCC-c-EEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEE
Confidence 44454433 22 3678899999999986543 3 8999999876521100001 1123569999999999999999
Q ss_pred EEeeeC-CCCccceEEEEEE
Q psy10918 78 VGFNIE-GDGESNAFFLNVM 96 (207)
Q Consensus 78 ~~~~~~-~~~~~~~~~l~v~ 96 (207)
...++. .+..+..+.|.|.
T Consensus 83 ~~~~~~~~S~~Sdpl~L~Vt 102 (106)
T 3kgr_A 83 IYYKPPKWSEQSDYLELLVK 102 (106)
T ss_dssp EEEETTEECCCCCCEEEEEE
T ss_pred EeeCCCcccCCCCCEEEEEe
Confidence 988753 3444667777765
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-10 Score=79.75 Aligned_cols=173 Identities=17% Similarity=0.173 Sum_probs=93.8
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
.+..|++++|.|.+... . .|.|.+++..... ..+++|.|.+++..|+|.|+|.+ .+.. .....|.|
T Consensus 17 ~~~~G~~v~l~C~~~~~--~-~i~W~~~~~~~~~-------~~~~~L~i~~~~~~d~G~YtC~~---~~~~-~~~~~l~v 82 (306)
T 3d85_D 17 PDAPGEMVVLTCDTPEE--D-GITWTLDQSSEVL-------GSGKTLTIQVKEFGDAGQYTCHK---GGEV-LSHSLLLL 82 (306)
T ss_dssp SSCCCEEEEEECSSSCC--S-SCEEEETTCCCCC-------EESSEEEEEECSGGGCEEEEEEE---TTEE-EEEEEEEE
T ss_pred cCccCCcEEEECCCCCC--C-cCEEEECCccccC-------CCCCEEEEEecCcCCCceEEEee---CCcc-cceEEEEE
Confidence 45689999999998732 2 7999999875321 24678999999999999999998 2322 22333445
Q ss_pred EeCC-c----ccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCce-eeeccceeEEeecC----------ceEEE
Q psy10918 96 MYSP-T----CKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA-ETVNVAQAHILRSG----------TLSVV 159 (207)
Q Consensus 96 ~~~~-~----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~-~~~~~~~~~~~~~~----------~~~~l 159 (207)
..++ . ........ .-....|.|.+...+..++..|..++.. +.......+....+ ....+
T Consensus 83 ~~~~~~~~~t~i~~~~~~----pp~~~~lsC~~~~~~~~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~~~~~~~~~c 158 (306)
T 3d85_D 83 HKKEDGIWSTDILKDQKE----PKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERV 158 (306)
T ss_dssp EEEETTEECCCSSCCCC-------CCCCCEEEBSSSSSEEEEEEEESCCSSEEEEEEEEECSSSCEEEEECCCEEEEEEE
T ss_pred EeccCCcceeeeecccCC----CCCCCcceEEcCCcccCcEEEecCCCCCceeEEEEEEecCCCCcceECCCCCCCccce
Confidence 4321 0 00000000 1123467787776653347777765431 11100000000000 00000
Q ss_pred EE-------------ecC----CCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCCceec
Q psy10918 160 AY-------------SPN----SELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKLT 206 (207)
Q Consensus 160 ~i-------------~~~----~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~~~~~ 206 (207)
.+ .+. .....-.++|.|.|..|..+....+.+.....|+||.++++.
T Consensus 159 ~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~ 222 (306)
T 3d85_D 159 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLK 222 (306)
T ss_dssp C--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEE
T ss_pred eecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEE
Confidence 01 000 011234568999999886554444444446789999987764
|
| >2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=67.37 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=49.7
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+.+|+.++|.|.+.+.+ ..+.|++++..... ......+....|.|.+++.+|+|.|.|.+.|..
T Consensus 15 ~v~~G~~VtL~C~~~~~~--~~~~w~k~g~~~~~----~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~ 79 (105)
T 2vsd_A 15 GVSLGDTVTLRCHLPRMA--AWVQLWLNGTLRFD----KEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSE 79 (105)
T ss_dssp SCCTTCEEEEEEECCSSC--EEEEEEETTEEEEE----EEECTTCSEEEEEEECCSGGGCEEEEEEEEEET
T ss_pred CcCcCCCEEEEEEcCCCC--cEEEEEECCcccee----eeccCCCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence 367899999999998653 38999998865321 122234456679999999999999999999854
|
| >1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=78.51 Aligned_cols=162 Identities=13% Similarity=0.146 Sum_probs=86.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---c-ccc------ccCCeEec------CCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---L-HHN------IAQGIIMT------NQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~-~~~------~~~~~~~~------~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|.... ... .+.||+... . + ... ...++... ..+|+|.+++.
T Consensus 4 v~Q~p~~v~v~~G~~vtL~C~~~~-~~~-~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~ 81 (215)
T 1oga_D 4 LEQSPQFLSIQEGENLTVYCNSSS-VFS-SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP 81 (215)
T ss_dssp CEEECSEEEEETTCCEEEEEECSS-CCS-CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred EEECCCEEEEecCCCEEEEEEEcC-CCc-eEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCc
Confidence 344566778899999999999843 333 799998431 1 1 100 01122221 13699999999
Q ss_pred CCCeeeEEEEeeeCCC-CccceEEEEEEeCCcccCCCCceeee-eeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc
Q psy10918 70 QSAGNYTCVGFNIEGD-GESNAFFLNVMYSPTCKPHQQRVLGV-ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA 146 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~-~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~ 146 (207)
+|+|.|+|.+....+. .......|.|...+... .+..... .....++|.|.+.+. |.+ .+ +++........
T Consensus 82 ~Dsg~Y~C~~~~~~~~~~fg~gt~L~V~~~~~~~--~P~V~~~~~~~~~vtL~C~~~gf~P~p-~v---~~~~~~~~~~t 155 (215)
T 1oga_D 82 GDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNP--DPAVYQLRDSKSSDKSVCLFTDFDSQT-NV---SQSKDSDVYIT 155 (215)
T ss_dssp GGCEEEEEEEECTTSSEEECCCEEEEEECCCSSC--CCEEEEEEBSSSSSCEEEEEESCCTTC-CC---CCCSSTTEEEC
T ss_pred ccCceEEEEEecccccceeCCCEEEEEeccCCCc--CCEEEEcCCCCCCeEEEEEccccccCc-cc---ccCCCCceEec
Confidence 9999999998743111 11123456776432111 1111111 123478999999985 555 66 33222111101
Q ss_pred eeE-EeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 147 QAH-ILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 147 ~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
... ...++. ..+.+....+.+.+.|+|.+..
T Consensus 156 ~~~~~~~~gl-~~~s~~~~~w~~~~~~tC~v~~ 187 (215)
T 1oga_D 156 DKTVLDMRSM-DFKSNSAVAWSNKSDFACANAF 187 (215)
T ss_dssp CCEEEEEGGG-TEEEEEEEEEESCSSCCTTTTT
T ss_pred cCcccCCCcc-EEEecchhhcCCCCceEEEEEc
Confidence 111 122222 2223333444456789998843
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-10 Score=87.06 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=68.5
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+++.+.|.+.|.|.| .+.|++++..+.. .....+...+....|.|.++..+|+|.|+|.|.|..|..+..
T Consensus 490 ~~~~v~~G~~~~~~~~v~g~P~P-~v~W~k~~~el~~-s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~ 567 (573)
T 3uto_A 490 YGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQ-SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 567 (573)
T ss_dssp CCEEECTTSCEEEEEEEECSSCC-EEEEEETTEECCS-SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCcEEeCCCcEEEEEEEEccCCC-eEEEEECCEEccc-CCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEE
Confidence 33456789999999999999998 9999999877542 334556666777889999999999999999999999988776
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.++|
T Consensus 568 v~l~V 572 (573)
T 3uto_A 568 VFLNV 572 (573)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
|
| >4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=70.12 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=53.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCC--CcEEEEEECCcccc-----------cc----ccCCeEe-------cCCeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP--VYKVEWRHNNKTLH-----------HN----IAQGIIM-------TNQSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~~~~~~-----------~~----~~~~~~~-------~~~~l~i~~~ 67 (207)
........|++++|.|....... ...+.|+|++.... .. ...+... .+.+|.|.++
T Consensus 12 ~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v 91 (125)
T 4gos_A 12 TVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNV 91 (125)
T ss_dssp EECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSC
T ss_pred CceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCC
Confidence 34455677999999999854332 23699999653210 00 0011111 1347999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+.+|+|.|+|.+.+..+.. ...+.|+|=
T Consensus 92 ~~~D~G~Y~C~v~~~~g~~-~~~v~LkVG 119 (125)
T 4gos_A 92 QLTDAGTYKCYIITSKGKG-NANLEYKTG 119 (125)
T ss_dssp CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred ChHHCEEEEEEEEeCCCeE-EEEEEEEEC
Confidence 9999999999999876654 445555553
|
| >4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-10 Score=69.12 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=53.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCC--cEEEEEECCccccc--------c--------ccCCeEe-------cCCeEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHH--------N--------IAQGIIM-------TNQSLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~~~--------~--------~~~~~~~-------~~~~l~i~~ 66 (207)
+....+..|++++|.|.+.+.+.. ..+.|+|....... . ...++.. .+.+|.|.+
T Consensus 7 p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~ 86 (123)
T 4gjt_B 7 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 86 (123)
T ss_dssp CSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEES
T ss_pred CCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECC
Confidence 455677889999999998654432 36889985421110 0 0011111 124699999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
++.+|+|.|.|.+.+.........+.|+|..
T Consensus 87 v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE 117 (123)
T 4gjt_B 87 AVQADEGEYECRVSTFPAGSFQARLRLRVLE 117 (123)
T ss_dssp CCSSSCSEEEEEEEESSSCEEEEEEEEEC--
T ss_pred CChHHCEEEEEEEEECCCCeEEeEEEEEEEE
Confidence 9999999999998753222334566777764
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=87.78 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=67.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+....+.+|+++.|.|.+.+.|.| .++|++++.++...........+ .+|.|.++..+|+|.|+|.+.|..|.
T Consensus 485 ~~~~~~~~~v~~G~~~~~~~~v~g~P~P-~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~ 563 (573)
T 3uto_A 485 FIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT 563 (573)
T ss_dssp EEECCCCEEECTTSCEEEEEEEECSSCC-EEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cccCCCCcEEeCCCcEEEEEEEEccCCC-eEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCc
Confidence 3344566788999999999999999998 99999999998765433333333 35999999999999999999999887
Q ss_pred CccceEEEEE
Q psy10918 86 GESNAFFLNV 95 (207)
Q Consensus 86 ~~~~~~~l~v 95 (207)
. +..+.|+|
T Consensus 564 ~-~~~v~l~V 572 (573)
T 3uto_A 564 K-EEIVFLNV 572 (573)
T ss_dssp E-EEEEEEEE
T ss_pred E-EEEEEEEE
Confidence 6 44555655
|
| >4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=68.69 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=51.8
Q ss_pred eeeCCcEEEEEEeccCCCC----ceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC-Ccc
Q psy10918 111 VARQEKVNISCEVDANPPD----VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH-QRV 185 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~ 185 (207)
+.+|+.++|.|.+.+.+.. ..+.|++++..+.. ......|.|.+++.+|+|.|+|.+.|..+. ...
T Consensus 19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~---------~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~ 89 (108)
T 4hwn_A 19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS---------RGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQ 89 (108)
T ss_dssp CBTTCCEEEEEEC---------CCEEEEEETTEEEEE---------EESCCEEEESSCCGGGCEEEEEEEECTTSSSEEE
T ss_pred CCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC---------CCcccEEEeCccCcccCeEEEEEEEeCCCceecc
Confidence 5689999999999765432 24999999876431 112345899999999999999999997652 223
Q ss_pred ceEEEEeecccC
Q psy10918 186 PCVFHIVSAVTF 197 (207)
Q Consensus 186 ~~~~~v~~~~~~ 197 (207)
+..+.+.+.++.
T Consensus 90 S~~l~L~V~g~~ 101 (108)
T 4hwn_A 90 SPQLEIRVQGAS 101 (108)
T ss_dssp CCCEEECCBC--
T ss_pred CCCEEEEEEecc
Confidence 445666665543
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=68.58 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=52.4
Q ss_pred CcccCCCcEEEEeEeccCCCC--cEEEEEECCccc--------ccc-------ccCCeEe------cCCeEEEEecCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTL--------HHN-------IAQGIIM------TNQSLVLQRVNRQS 71 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~--------~~~-------~~~~~~~------~~~~l~i~~~~~~d 71 (207)
..+.+|++++|.|...+.+.. ..+.|++..... ... ...++.. ...+|.|.+++.+|
T Consensus 4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D 83 (109)
T 2oyp_A 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDD 83 (109)
T ss_dssp EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChh
Confidence 346789999999998765322 259999965321 000 0111111 12479999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+|.|.|.+.+..+.. ...+.|.|.
T Consensus 84 ~G~Y~C~v~~~~~~~-~~~~~l~V~ 107 (109)
T 2oyp_A 84 HGTYCCRIQFPGLMN-DKKLELKLD 107 (109)
T ss_dssp CEEEEEEECCSSTTC-CEEEEEEEE
T ss_pred CeEEEEEEEcCCccc-ceEEEEEEE
Confidence 999999998765443 335556554
|
| >1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-11 Score=81.45 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=48.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--c---cc-c--c----ccCCeEe------cCCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--T---LH-H--N----IAQGIIM------TNQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~---~~-~--~----~~~~~~~------~~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|.+.+.. . .+.||+... . +. . . ...++.. ....|+|.+++.
T Consensus 4 v~Q~p~~v~v~~G~~v~L~C~~s~~~-~-~v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~ 81 (207)
T 1ymm_D 4 GEEDPQALSIQEGENATMNCSYKTSI-N-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA 81 (207)
T ss_dssp -----CCCCCSSCCCCCBCCBCSSCE-E-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCS
T ss_pred eEECCCEEEEeCCCCEEEEEEecCCC-c-eEEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCc
Confidence 34456677889999999999986655 4 899998531 1 10 0 0 0111211 124699999999
Q ss_pred CCCeeeEEEEeeeC--CC-CccceEEEEEEeCC--cccCCCCceeeeeeCCcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 70 QSAGNYTCVGFNIE--GD-GESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~--~~-~~~~~~~l~v~~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
+|+|.|+|.+.+.. +. .......|.|...+ ..+..... . .....++|.|.+.+. |.+ .+....+. ...
T Consensus 82 ~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~--~-~~~~~vtL~C~~~gf~P~p-~v~~~~~~-~~~- 155 (207)
T 1ymm_D 82 ADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQL--R-DSKSSDKSVCLFTDFDSQT-NVSQSKDS-DVY- 155 (207)
T ss_dssp TTCSCCEEEEEETTSCSCEEECC---------------------------------------------------------
T ss_pred ccCceEEEEEEcCCCcceeeECCCEEEEEECCCCCCCCEEEec--C-CCCCCeEEEEEccccccCC-cccccccc-cee-
Confidence 99999999998631 10 11122345555321 11111100 0 112478999999985 555 66321111 000
Q ss_pred ccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 144 NVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 144 ~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
......... ...+. .+....+.+...|+|.+....
T Consensus 156 -~t~~~~~~~~~~~S~-t~~~~~w~~~~~~tC~V~~~~ 191 (207)
T 1ymm_D 156 -ITDKTVLDMRSMDFK-SNSAVAWSNKSDFACANAFNN 191 (207)
T ss_dssp --------------------------------------
T ss_pred -ecCCceecccccccc-ccchhhcCCCCceEEEEEeCC
Confidence 000001011 11222 455566677889999997643
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-09 Score=72.29 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=58.8
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeee-----------ccceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETV-----------NVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|+.+.|.|.+.+.+.+ .+.|++. +..... ...+...........|.|.+++.+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 87 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDV-YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYC 87 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCc-eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEE
Confidence 4567899999999999988876 9999983 222111 0112223334556679999999999999999
Q ss_pred EEecCCC---CCccceEEEEe
Q psy10918 175 WGSNKIG---HQRVPCVFHIV 192 (207)
Q Consensus 175 ~~~n~~g---~~~~~~~~~v~ 192 (207)
.|.|..+ .......+.|.
T Consensus 88 ~~~~~~~~~~~~~~~~~l~V~ 108 (213)
T 3mj8_L 88 QSWDGTNSAWVFGSGTKVTVL 108 (213)
T ss_dssp EEEETTTTEEEEBCCEEEEEE
T ss_pred EeccCCcceeEEcCceEEEEe
Confidence 9999877 33344455554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.10 E-value=9.1e-11 Score=87.76 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=61.5
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc-c--ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-N--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
.+....+.+|++++|.|.+. |.+ .+.|++++..+.. . ........+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 358 ~~~~~~v~~G~~~~l~C~~~--p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~- 433 (452)
T 3zyi_A 358 APRDLNISEGRMAELKCRTP--PMS-SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNS- 433 (452)
T ss_dssp CCCCEECCTTSCCEECCBCC--TTS-EEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCEE-
T ss_pred ccccccccCCCEEEEEEeCC--CCC-cEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCcE-
Confidence 34556788999999999987 666 9999995543332 1 112233456789999999999999999999998876
Q ss_pred cceEEEEEEeCC
Q psy10918 88 SNAFFLNVMYSP 99 (207)
Q Consensus 88 ~~~~~l~v~~~~ 99 (207)
...+.|.|...+
T Consensus 434 ~~~~~l~v~~~~ 445 (452)
T 3zyi_A 434 NASAYLNVSTAG 445 (452)
T ss_dssp EEEEEEEC----
T ss_pred EEEEEEEEEccc
Confidence 446677776544
|
| >1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-10 Score=68.82 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=54.9
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEecc---CCCCcEEEEEECCcccc----------------------------ccccC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVA---VPPVYKVEWRHNNKTLH----------------------------HNIAQ 53 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~~i~W~~~~~~~~----------------------------~~~~~ 53 (207)
.+.+...+....+.+|++++|.|.+.. .+.+ .+.|++++.... .....
T Consensus 4 ~~~v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T 1xt5_A 4 IMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPP-VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLG 82 (135)
T ss_dssp EEEEECSCSEEEEETTSCEEECCEEEEETCCSCC-EEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTT
T ss_pred EEEEeCCCceEEEeCCCCEEEeeEeecCCCCCcc-EEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcC
Confidence 345556667778899999999999743 4444 899999654320 00001
Q ss_pred CeEec---CCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 54 GIIMT---NQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 54 ~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
++... ..+|.|.+++..|+|.|.|.+.+...
T Consensus 83 R~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 116 (135)
T 1xt5_A 83 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 116 (135)
T ss_dssp TEEESCTTSCCEEECSCCGGGCEEEEEEEECSSC
T ss_pred cEEEecCCCCeEEECCCChhhCcEEEEEEEcCCc
Confidence 22222 25799999999999999999987643
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.4e-10 Score=67.33 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=56.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCce------eee--c--------cceeEEe--ecCceEEEEEecCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA------ETV--N--------VAQAHIL--RSGTLSVVAYSPNSELD 168 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~------~~~--~--------~~~~~~~--~~~~~~~l~i~~~~~~~ 168 (207)
....+.+|+.++|.|..........+.|++.... ... . ..+..+. .......|.|.+++.+|
T Consensus 5 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D 84 (116)
T 2or8_A 5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESD 84 (116)
T ss_dssp EEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGG
T ss_pred ceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCccc
Confidence 3445779999999999875332338999997521 000 0 0111110 11223469999999999
Q ss_pred CeEEEEEEecCCCCCccceEEEEeecccC
Q psy10918 169 YGTLICWGSNKIGHQRVPCVFHIVSAVTF 197 (207)
Q Consensus 169 ~g~y~C~~~n~~g~~~~~~~~~v~~~~~~ 197 (207)
+|.|.|.+.+..+.......+.|.+.+.+
T Consensus 85 sG~Y~C~v~~~~~~~~~~~~~~l~V~p~~ 113 (116)
T 2or8_A 85 SGLYCCRVEIPGWFNDQKVTFSLQVKPEL 113 (116)
T ss_dssp CEEEEEEECCSSTTCCEEEEEEEEEECSC
T ss_pred CEEEEEEEEcCCcccccEEEEEEEECCcc
Confidence 99999999987544333555666654433
|
| >3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-11 Score=67.27 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=44.7
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC-CCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN-SELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~n 178 (207)
..+..|+.++|.|.+.+.| .|.|+|+|..+... ....|.|.++ ..+|+|.|+|.|.+
T Consensus 9 ~v~~~G~~v~L~C~~~g~P---~i~W~kdg~~l~~~----------~~~~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 9 KVSISGTSVELTCPLDSDE---NLKWEKNGQELPQK----------HDKHLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp EEEEETTEEEEECSSCCCS---SCEEEETTEECTTC----------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred eEEEcCCeEEEEEECCCCC---cEEEEECCEECcCC----------CCCEEEECccCccCcCEEEEEEEcc
Confidence 3456899999999999876 39999998765311 1224889996 77999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 207 | ||||
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 1e-07 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 2e-07 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-05 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 7e-07 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 8e-07 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-06 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-06 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 3e-06 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 7e-06 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 7e-06 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-05 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 2e-05 | |
| d1l6za2 | 96 | b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, | 3e-05 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 5e-05 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 7e-05 | |
| d1fnla2 | 89 | b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C | 1e-04 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-04 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 2e-04 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 3e-04 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 5e-04 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 5e-04 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 5e-04 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 7e-04 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 0.001 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 0.001 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 0.002 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 0.002 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 0.003 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 0.003 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-07
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAG 73
++ V + P+ W K + + + + L + ++ G
Sbjct: 11 KVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCG 69
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP 99
YT + N G ++ L V+ P
Sbjct: 70 CYTLLVENKLGSRQAQV-NLTVVDKP 94
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 45.6 bits (107), Expect = 2e-07
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSA 72
+ + V F C P + W N K G + SL+++ V
Sbjct: 16 AVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 74
Query: 73 GNYTCVGFNIEGDGESNAFFLNVM 96
GNYTCV N G L+V+
Sbjct: 75 GNYTCVVENEYGSINHTY-HLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 39.4 bits (91), Expect = 3e-05
Identities = 14/88 (15%), Positives = 20/88 (22%), Gaps = 1/88 (1%)
Query: 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164
++R+ V V C NP W N +
Sbjct: 11 EKRLHAVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 69
Query: 165 SELDYGTLICWGSNKIGHQRVPCVFHIV 192
D G C N+ G +V
Sbjct: 70 VPSDKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (102), Expect = 7e-07
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVL 64
+L + P KE D CD+V+ P + + + I+++N L +
Sbjct: 1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60
Query: 65 QRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ + + G Y C G + GE N + V
Sbjct: 61 RGIKKTDEGTYRCEGRILAR-GEINFKDIQV 90
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (102), Expect = 8e-07
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 16 HIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ E F C ++A PV + + L + RV G
Sbjct: 12 EVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE 71
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP 99
YT N G E FLNV
Sbjct: 72 YTVRAKNSYGTKEEIV-FLNVTRHS 95
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 42.8 bits (100), Expect = 1e-06
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS 71
+K+ DV C + +P V W HN K L +T+ LV++ V
Sbjct: 10 EKVIVVKQGQDVTIPCKVTGLPA-PNVVWSHNAKPLSGG---RATVTDSGLVIKGVKNGD 65
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
G Y C N GD + V
Sbjct: 66 KGYYGCRATNEHGDKYFET-LVQV 88
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 42.2 bits (98), Expect = 2e-06
Identities = 15/77 (19%), Positives = 26/77 (33%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
+ V C A PP + + ++ ++ ++ V + AG+Y C
Sbjct: 20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 78 VGFNIEGDGESNAFFLN 94
V N G S L
Sbjct: 80 VATNARGTVVSREASLR 96
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 3e-06
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ + E ++ C VYKV + + + L + N ++ + + +G
Sbjct: 9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSG 62
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP 99
Y C G + D ES + V+ +P
Sbjct: 63 TYYCTGKVWQLDYESEPLNITVIKAP 88
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.0 bits (95), Expect = 7e-06
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E F CD P P + + + + V GNY
Sbjct: 11 VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 70
Query: 76 TCVGFNIEGDGESNAFFLNV 95
+ V N EG E+ L +
Sbjct: 71 SVVVENSEGKQEAEF-TLTI 89
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 7e-06
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSAG 73
+ + V +C + + + + + + L L+ V R AG
Sbjct: 8 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAG 67
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
Y C + S +L V
Sbjct: 68 RYWCQVEDGGETEISQPVWLTV 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (91), Expect = 2e-05
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
++ +DV F C + P Y + W + + + N L ++ V AG Y
Sbjct: 14 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAMDFNGILTIRNVQPSDAGTYV 70
Query: 77 CVGFNIEGDGESNA 90
C G N+ + A
Sbjct: 71 CTGSNMFAMDQGTA 84
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 39.6 bits (91), Expect = 2e-05
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-QSLVLQRVNRQSAGNY 75
+E++ +C I K W+ + K+ + + + SLV R G+Y
Sbjct: 14 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 73
Query: 76 TCVGFNIEGDGESNAFFLNV 95
C G S
Sbjct: 74 QCFAETPAGVASSRVISFRK 93
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (91), Expect = 3e-05
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+KE V C + ++W N+++L + N L + + R+ AG Y
Sbjct: 15 VKELDSVTLTCLSNDIGA--NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQ 72
Query: 77 CVGFNIEGDGESNAFFLNVMYSPT 100
C N SN+ L++++ P+
Sbjct: 73 CEISNPVSVRRSNSIKLDIIFDPS 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.7 bits (89), Expect = 5e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 17 IKEDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
K C + P Y + N I + + + L+ + + G
Sbjct: 15 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEG 74
Query: 74 NYTCVGFNIEGDGESNAFFLNVM 96
YTC N G + ++ L V+
Sbjct: 75 VYTCEVDNGVGKPQKHSLKLTVV 97
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 38.3 bits (88), Expect = 7e-05
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSL---VLQR 66
+ + + SD +F +V P + EW N + + ++ V++
Sbjct: 9 ERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 67
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V + + + NI G+ S+A FL V
Sbjct: 68 VTGEDSASIMVKAINIAGETSSHA-FLLV 95
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 37.2 bits (85), Expect = 1e-04
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
KE+ ++ C ++KV + N K + N + + + +G+Y
Sbjct: 14 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHNSDFHIPKATLKDSGSYF 67
Query: 77 CVGFNIEGDGESNAFFLNVMYS 98
C G + S + + +
Sbjct: 68 CRGLVGSKNVSSETVNITITQA 89
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 2e-04
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRV 67
+ + F C + W + + + +++ S +
Sbjct: 8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 67
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNV 95
++ AG Y C+ G G SN L V
Sbjct: 68 TKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 36.8 bits (84), Expect = 2e-04
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ SD+ + C P R N + ++ L ++
Sbjct: 6 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE---VSGGELRFSKLVL 62
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +G Y CV N G ++A L V
Sbjct: 63 EDSGMYQCVAENKHGTVYASA-ELTV 87
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 3e-04
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
V C V V W + + L+L+ V +GNY+
Sbjct: 18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPA-AGSHPSRWAGMGRRLLLRSVQLHDSGNYS 76
Query: 77 CV 78
C
Sbjct: 77 CY 78
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 36.0 bits (82), Expect = 5e-04
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNNKTLHHNIAQGIIMTN 59
P + +++ + E S FDC + P V + + K H N
Sbjct: 5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64
Query: 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
SL + V YTC N G+ A L V
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTA-ELLV 99
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 35.6 bits (81), Expect = 5e-04
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ V +C P +++WR + + + L +Q V+ + G Y
Sbjct: 16 YALTGQMVTLECFAFGNPVP-QIKWRKL----DGSQTSKWLSSEPLLHIQNVDFEDEGTY 70
Query: 76 TCVGFNIEGDGESNA 90
C NI+G
Sbjct: 71 ECEAENIKGRDTYQG 85
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 5e-04
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 10/87 (11%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----------HHNIAQGIIMTNQSLV 63
P + + C P + W + ++ N + I + L+
Sbjct: 11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 70
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNA 90
V +G Y C N G +
Sbjct: 71 FDPVTAFDSGEYYCQAQNGYGTAMRSE 97
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 35.3 bits (80), Expect = 7e-04
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+E + C P+ KV + N K+ + ++ + + + N +G+Y
Sbjct: 12 FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS------RSDPNFSIPQANHSHSGDYH 65
Query: 77 CVGFNIEGDGESNAFFLNVMY 97
C G S + V
Sbjct: 66 CTGNIGYTLYSSKPVTITVQA 86
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 34.4 bits (78), Expect = 0.001
Identities = 7/75 (9%), Positives = 20/75 (26%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ L + +F+ ++ + + + T + L+L
Sbjct: 6 KPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQL 65
Query: 70 QSAGNYTCVGFNIEG 84
G + N +
Sbjct: 66 GMTGEVSFQAANAKS 80
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (78), Expect = 0.001
Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 2/77 (2%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRV 67
+ L V +C++ K I L+++
Sbjct: 5 KQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 64
Query: 68 NRQSAGNYTCVGFNIEG 84
+ A Y+ + +
Sbjct: 65 TKADAAEYSVMTTGGQS 81
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.002
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPV--------------YKVEWRHNNKTLHHNIAQGIIMTNQSL 62
DV F C + + Y + K L + L
Sbjct: 17 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 76
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96
++ V + AG YTC+ N G +A +L V+
Sbjct: 77 YIRNVTFEDAGEYTCLAGNSIGISFHSA-WLTVL 109
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.2 bits (77), Expect = 0.002
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSL---------VL 64
P + C P + W + + N +N S V
Sbjct: 11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 70
Query: 65 QRVNRQSAGNYTCVGFNIEGDGESNA 90
++ G Y+C N G ++
Sbjct: 71 DPLSASDTGEYSCEARNGYGTPMTSN 96
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 33.7 bits (76), Expect = 0.003
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSAGNYT 76
V CD P + W + + + + + L ++ V++ Y
Sbjct: 21 QSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 79
Query: 77 CVGFNIEGDGESNAFFLNV 95
C+ N G+ +++ L V
Sbjct: 80 CIAENKAGEQDASI-HLKV 97
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 33.7 bits (76), Expect = 0.003
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 99 PTCKPHQQRVLGVARQ-EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLS 157
PT + Q V A + V + C+ D P E + S S
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191
+ + D +C NK G Q +
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 207 | |||
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.74 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.73 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.72 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.7 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.7 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.7 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.7 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.7 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.69 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.69 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.68 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.68 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.68 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.68 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.67 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.67 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.67 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.66 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.66 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.66 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.66 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.65 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.65 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.65 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.65 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.65 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.65 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.65 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.64 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.64 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.64 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.63 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.63 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.62 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.62 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.62 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.62 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.61 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.61 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.61 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.61 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.6 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.6 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.6 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.6 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.6 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.6 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.59 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.59 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.59 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.59 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.58 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.58 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.58 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.58 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.58 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.57 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.57 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.57 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.57 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.56 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.56 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.56 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.56 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.56 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.55 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.55 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.54 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.54 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.53 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.53 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.52 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.52 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.51 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.51 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.51 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.51 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.51 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.5 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.5 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.5 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.5 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.5 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.49 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.49 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.49 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.48 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.48 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.47 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.47 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.47 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.47 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.47 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.46 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.46 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.45 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.45 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.45 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.44 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.44 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.44 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.42 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.42 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.42 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.41 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.39 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.37 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.36 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.36 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.36 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.32 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.29 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.29 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.23 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 99.21 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 99.16 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.15 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.09 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 99.09 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 99.09 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 99.08 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.0 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.99 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.98 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.98 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.93 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.92 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.92 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.92 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.92 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.91 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.91 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.91 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.9 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.9 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.88 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.87 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.87 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.86 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.86 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.85 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.84 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.8 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.78 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.77 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.77 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.77 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.76 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.75 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.75 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.74 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.74 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.74 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.72 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.71 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.71 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.7 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.7 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.69 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.69 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.69 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.69 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.67 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.66 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.66 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.66 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.66 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.64 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.64 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.64 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.63 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.63 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.59 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.58 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.58 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.58 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.58 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 98.57 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.57 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.57 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.57 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.55 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.55 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.54 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.54 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.53 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.53 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.53 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.53 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.53 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.52 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.52 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.52 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.51 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 98.51 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.51 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.5 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.5 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.5 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.49 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.49 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.48 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.47 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.46 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.45 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.45 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.44 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 98.44 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.44 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.44 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.44 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.43 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.43 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.43 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.42 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.42 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.42 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.41 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 98.41 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.41 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.4 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.4 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.4 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.4 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.39 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 98.39 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.39 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.39 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.39 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.38 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.38 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.38 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.38 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.37 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.37 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.37 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.36 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.35 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.35 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.35 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.35 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.35 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.35 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 98.34 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.34 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 98.34 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.34 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.33 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.32 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 98.32 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.31 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 98.31 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.31 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.31 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.31 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.3 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 98.3 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.3 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.3 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 98.28 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.28 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.28 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.28 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 98.27 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.27 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 98.27 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 98.26 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 98.25 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.25 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.25 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.23 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.23 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.23 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 98.23 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.22 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.21 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.21 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.2 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 98.2 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.2 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.2 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.19 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 98.19 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.19 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 98.19 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.19 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 98.18 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 98.18 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.18 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.18 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 98.17 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 98.16 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 98.15 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.15 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.15 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.15 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.15 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 98.14 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 98.13 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 98.12 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 98.11 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.11 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.11 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.11 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.1 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.09 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.09 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.09 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.08 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.08 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.08 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 98.08 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 98.08 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 98.07 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.06 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 98.06 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 98.06 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 98.05 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 98.05 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.04 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 98.04 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.03 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 98.03 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.02 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.02 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 98.02 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.01 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.01 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.01 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.01 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.0 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.0 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.0 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 98.0 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.99 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.99 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.99 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.98 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.98 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.98 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.97 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.96 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.96 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.96 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.96 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.96 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.96 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.95 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.95 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.94 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.93 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 97.93 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.93 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.93 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.9 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.9 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.9 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.9 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.89 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.89 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.89 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.88 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.88 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.88 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.88 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.88 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.88 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.88 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.87 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.87 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.86 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.86 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.86 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.86 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.86 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.85 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.84 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.83 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.83 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.83 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.82 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.82 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.82 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.82 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.82 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.81 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.81 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.8 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.8 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 97.79 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.79 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.79 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.78 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.78 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.78 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 97.77 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.77 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.77 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.75 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.75 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.74 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.74 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.74 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.73 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.72 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.71 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.71 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.71 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.71 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.7 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.7 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.7 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.69 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.68 | |
| d1fp5a1 | 103 | Immunoglobulin heavy chain epsilon constant domain | 97.68 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.68 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.68 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 97.68 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.67 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 97.66 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 97.66 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.66 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 97.65 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.64 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.64 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.63 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.63 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.63 | |
| d1ow0a1 | 101 | Immunoglobulin heavy chain alpha constant domain 2 | 97.62 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.61 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.6 | |
| d1l6xa1 | 105 | Immunoglobulin heavy chain gamma constant domain 2 | 97.59 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.59 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.58 | |
| d1pfca_ | 111 | Immunoglobulin heavy chain gamma constant domain 3 | 97.55 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.54 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.53 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.52 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.5 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.47 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.46 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.46 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.46 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.45 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.44 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.43 | |
| d1sy6a1 | 81 | CD3 gamma chain ectodomain fragment {Human (Homo s | 97.43 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.42 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.42 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.41 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.4 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 97.4 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.4 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.39 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.38 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.35 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.35 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.35 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.34 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.33 | |
| d1jbja1 | 86 | CD3 gamma chain ectodomain fragment {Mouse (Mus mu | 97.33 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 97.32 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.3 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.3 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.29 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.29 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.28 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.28 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 97.27 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.26 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.25 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.24 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.24 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.24 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 97.23 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.23 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.23 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.21 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.21 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2e-17 Score=96.84 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=73.8
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.|.|.+ .+.|++++..+.. ..+..+......+.|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 7 p~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~~~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 84 (101)
T d2cqva1 7 PEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQE-SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 84 (101)
T ss_dssp CCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCC-SSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC
T ss_pred CCcEEEeCCCcEEEEEEEEecCCC-EEEEEeCceeecc-CCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEE
Confidence 344567899999999999999987 9999999987643 33445556666778999999999999999999999998877
Q ss_pred ceEEEEeecccCCCCC
Q psy10918 186 PCVFHIVSAVTFHPPF 201 (207)
Q Consensus 186 ~~~~~v~~~~~~~~p~ 201 (207)
++.+. +.+.|+||.
T Consensus 85 ~~~l~--V~~~P~pP~ 98 (101)
T d2cqva1 85 QVNLT--VVDKPDPPA 98 (101)
T ss_dssp CEEEE--EECSCSCCC
T ss_pred EEEEE--EEecCCCcC
Confidence 75554 446777774
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.74 E-value=5e-18 Score=96.91 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=72.6
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.|...+.+..+..|+++.|.|.+.|.|.+ .++|++|+.++.... .....+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus 3 ~f~~~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (89)
T d1cs6a4 3 DWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLASQN--RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV 79 (89)
T ss_dssp EEEECCCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECCCCS--SEEEETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred CeEEECCCEEECCCCcEEEEEEEEEEcCC-EEEEEEeeccccccc--eeeeeeeeEEEEeecccCCEEEEEEEEeCCCEE
Confidence 45567788889999999999999999988 999999999887643 445567889999999999999999999998866
Q ss_pred ccceEEEEEE
Q psy10918 87 ESNAFFLNVM 96 (207)
Q Consensus 87 ~~~~~~l~v~ 96 (207)
.....|.|+
T Consensus 80 -~~~~~l~V~ 88 (89)
T d1cs6a4 80 -YASAELTVQ 88 (89)
T ss_dssp -EEEEEEEEE
T ss_pred -EEEEEEEEE
Confidence 446677775
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=5.1e-18 Score=98.50 Aligned_cols=86 Identities=22% Similarity=0.405 Sum_probs=71.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+..+.+|++++|.|.+.+. .+ .+.|++++..+...........+.+|.|.+++.+|.|.|.|.+.|..|...+..+
T Consensus 10 ~~~~~v~~g~~v~l~C~~~~~-~~-~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~ 87 (96)
T d1l6za2 10 VTNTTVKELDSVTLTCLSNDI-GA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI 87 (96)
T ss_dssp CSCSEECTTSCEEEEECCCCS-SC-EEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred cCceEEeCCCeEEEEEccCCC-CC-CEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence 456778999999999998664 45 8999999999877555445555678999999999999999999999888777788
Q ss_pred EEEEEeCC
Q psy10918 92 FLNVMYSP 99 (207)
Q Consensus 92 ~l~v~~~~ 99 (207)
.|+|.++|
T Consensus 88 ~L~V~~~P 95 (96)
T d1l6za2 88 KLDIIFDP 95 (96)
T ss_dssp EEEECCSC
T ss_pred EEEEEcCC
Confidence 89998776
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.2e-17 Score=95.95 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=72.9
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+.... .+|.|.+++..|+|.|+|.+.|..|..
T Consensus 5 ~~p~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~- 82 (101)
T d2cqva1 5 QFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR- 82 (101)
T ss_dssp CCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEE-
T ss_pred eeCCcEEEeCCCcEEEEEEEEecCCC-EEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEE-
Confidence 44677788999999999999999887 99999999998765443332222 369999999999999999999998876
Q ss_pred cceEEEEEEeCCcc
Q psy10918 88 SNAFFLNVMYSPTC 101 (207)
Q Consensus 88 ~~~~~l~v~~~~~~ 101 (207)
...+.|.|...|..
T Consensus 83 ~~~~~l~V~~~P~p 96 (101)
T d2cqva1 83 QAQVNLTVVDKPDP 96 (101)
T ss_dssp ECCEEEEEECSCSC
T ss_pred EEEEEEEEEecCCC
Confidence 55778999876653
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.3e-17 Score=93.06 Aligned_cols=81 Identities=12% Similarity=0.258 Sum_probs=65.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
|...+.+..+.+|+++.|.|.+.|.|.|.+|+|++|+..+.... ...+.|.....+|+|.|+|.+.|..|...
T Consensus 4 f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~ 76 (85)
T d1rhfa2 4 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PSPSVLNVTGVTQSTMFSCEAHNLKGLAS 76 (85)
T ss_dssp EEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-------ESSEEEEECCCSSCEEEEEEEEETTEEEE
T ss_pred EEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-------CcceEEecCCccccEEEEEEEEcCCCcEE
Confidence 33457778899999999999999998766899999998876532 23467777888999999999999998766
Q ss_pred cceEEEEE
Q psy10918 88 SNAFFLNV 95 (207)
Q Consensus 88 ~~~~~l~v 95 (207)
++.+.|.|
T Consensus 77 S~~~~v~V 84 (85)
T d1rhfa2 77 SRTATVHL 84 (85)
T ss_dssp CCCEEEEE
T ss_pred EEEEEEEE
Confidence 66777765
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.70 E-value=3.9e-17 Score=95.06 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=68.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+............++.+.|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 12 ~~~~v~~g~~v~l~c~v~g~P~p-~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 90 (98)
T d1g1ca_ 12 QSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH 90 (98)
T ss_dssp CCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CcEEEcCCCcEEEEEEEEEecCC-eEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence 44567899999999999999987 99999998876543333334445566789999999999999999999999988766
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.|.|.
T Consensus 91 ~~L~V~ 96 (98)
T d1g1ca_ 91 AFLLVQ 96 (98)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666554
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.70 E-value=3.2e-17 Score=96.13 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=74.6
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec---CCeEEEEecCCCCCeeeEEE
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~ 78 (207)
|.+...|...+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+........... ..+|.|.+++..|.|.|.|.
T Consensus 5 p~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 83 (102)
T d1fhga_ 5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 83 (102)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCCeEEcCCCcEEEecCCcEEEEEEEEeccCC-eEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEE
Confidence 3455567777888899999999999999999888 9999999999886544333322 23699999999999999999
Q ss_pred EeeeCCCCccceEEEEEE
Q psy10918 79 GFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 79 ~~~~~~~~~~~~~~l~v~ 96 (207)
+.|..|.. ..++.|.|+
T Consensus 84 a~N~~G~~-~~~~~L~V~ 100 (102)
T d1fhga_ 84 AVNSLGEA-TCTAELLVE 100 (102)
T ss_dssp EEETTEEE-EEEEEEEEE
T ss_pred EEECCcEE-EEEEEEEEE
Confidence 99998876 446677765
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.3e-17 Score=93.34 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=67.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
.....+.+|+.++|.|.+.+.+++..+.|||||..+... .....|.|.+++.+|+|.|.|.+.|..+...+..+
T Consensus 7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v 80 (89)
T d1f2qa2 7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 80 (89)
T ss_dssp ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc------cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence 455678999999999999776555699999999877542 22467999999999999999999988776667788
Q ss_pred EEEEEeCC
Q psy10918 92 FLNVMYSP 99 (207)
Q Consensus 92 ~l~v~~~~ 99 (207)
.|+|..+|
T Consensus 81 ~i~V~~~P 88 (89)
T d1f2qa2 81 NITVIKAP 88 (89)
T ss_dssp EEEEECSC
T ss_pred EEEEEeCC
Confidence 89998776
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.70 E-value=2.1e-17 Score=95.98 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=68.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.+ .+.|++++..+... ....+...+....|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 9 ~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 86 (97)
T d1koaa1 9 YGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQS-VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 86 (97)
T ss_dssp CCCEEETTSCEEEEEEEECSSCC-EEEEEETTEECCSB-TTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEE
T ss_pred CCEEEeCCCcEEEEEEEEEcCCC-EEEEEEeeecccee-eEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEE
Confidence 34457899999999999999987 99999998876432 23344455667789999999999999999999999988766
Q ss_pred eEEEEee
Q psy10918 187 CVFHIVS 193 (207)
Q Consensus 187 ~~~~v~~ 193 (207)
+.+.|..
T Consensus 87 ~~l~V~~ 93 (97)
T d1koaa1 87 VFLNVTR 93 (97)
T ss_dssp ECCEEEC
T ss_pred EEEEEee
Confidence 6666653
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.70 E-value=2.6e-17 Score=95.65 Aligned_cols=89 Identities=22% Similarity=0.369 Sum_probs=70.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+|...+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+...........+ ..|.|.+++..|+|.|.|.+.|..|
T Consensus 3 ~f~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 81 (97)
T d1koaa1 3 RFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 81 (97)
T ss_dssp EEEECCCCCEEETTSCEEEEEEEECSSCC-EEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred EEEEeCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence 34455778889999999999999999988 99999999998765433332222 3599999999999999999999888
Q ss_pred CCccceEEEEEEe
Q psy10918 85 DGESNAFFLNVMY 97 (207)
Q Consensus 85 ~~~~~~~~l~v~~ 97 (207)
.. ...+.|.|..
T Consensus 82 ~~-~~~~~l~V~~ 93 (97)
T d1koaa1 82 TK-EEIVFLNVTR 93 (97)
T ss_dssp EE-EEEECCEEEC
T ss_pred EE-EEEEEEEEee
Confidence 65 4466677764
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.69 E-value=5.4e-17 Score=92.42 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=63.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
.....+.+|++++|.|.+.+.+++.++.||+||..+.. ...+..|.|.+++.+|+|.|.|.+.|..+...+..+
T Consensus 9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v 82 (89)
T d1fnla2 9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 82 (89)
T ss_dssp CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce------eccccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence 44566889999999999875544458999999977643 233567999999999999999999988776656777
Q ss_pred EEEEEe
Q psy10918 92 FLNVMY 97 (207)
Q Consensus 92 ~l~v~~ 97 (207)
.|.|++
T Consensus 83 ~itV~E 88 (89)
T d1fnla2 83 NITITQ 88 (89)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888764
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.69 E-value=3e-17 Score=93.31 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=63.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
....+.+|++++|.|.+.+.+++..+.|||++..+... ..+..|.|.+++.+|+|.|.|.+.|..+...+..+.
T Consensus 8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~ 81 (88)
T d2fcba2 8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT 81 (88)
T ss_dssp SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred CCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence 45568899999999999765444489999999876532 234679999999999999999999987765566777
Q ss_pred EEEEeC
Q psy10918 93 LNVMYS 98 (207)
Q Consensus 93 l~v~~~ 98 (207)
|.|+.+
T Consensus 82 l~V~~P 87 (88)
T d2fcba2 82 ITVQAP 87 (88)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 887643
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.68 E-value=9e-17 Score=94.19 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=66.5
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-cCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+..|+.+.|.|.+.|.|.| .+.|+++|..+.... ...+.. ......|.|.++..+|+|.|+|.|.|..|....
T Consensus 16 ~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~~~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 93 (102)
T d1fhga_ 16 LDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESR-HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 93 (102)
T ss_dssp CCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCSS-SEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CcEEEecCCcEEEEEEEEeccCC-eEEEEeeecccccee-eEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEE
Confidence 34557899999999999999987 999999998765432 333333 344677999999999999999999999998876
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
++.|.|.
T Consensus 94 ~~~L~V~ 100 (102)
T d1fhga_ 94 TAELLVE 100 (102)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7666543
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.68 E-value=7.2e-17 Score=93.89 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=70.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe-cC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.|...+.+..+.+|+++.|.|.+.+.|.+ .+.|++++.++.......... .+ .+|.|.+++..|+|.|.|.+.|..
T Consensus 6 ~f~~~~~~~~v~~g~~v~l~c~v~g~P~p-~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~ 84 (98)
T d1g1ca_ 6 KIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIA 84 (98)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred eEecCCCcEEEcCCCcEEEEEEEEEecCC-eEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECC
Confidence 34556778889999999999999999888 999999999987654333222 22 269999999999999999999998
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
|.. .....|.|+
T Consensus 85 G~~-~~~~~L~V~ 96 (98)
T d1g1ca_ 85 GET-SSHAFLLVQ 96 (98)
T ss_dssp EEE-EEEEEEEEE
T ss_pred cEE-EEEEEEEEE
Confidence 876 446677776
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4e-17 Score=93.74 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=67.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC----CeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+............ ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred CeeEEEcCCCeEEEEEEEEecCCc-eEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence 455678899999999999999888 99999999988765433332222 3599999999999999999999988766
Q ss_pred cceEEEEEE
Q psy10918 88 SNAFFLNVM 96 (207)
Q Consensus 88 ~~~~~l~v~ 96 (207)
+..+.|.|.
T Consensus 82 S~~~~l~V~ 90 (91)
T d1rhfa1 82 SQPVWLTVE 90 (91)
T ss_dssp CCCEEEEEE
T ss_pred EEEEEEEEE
Confidence 777778775
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.68 E-value=2.2e-17 Score=95.85 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=64.3
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.|.|.| .+.|+++|..+.................|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 14 ~~~v~~G~~v~l~C~~~g~P~p-~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 92 (97)
T d3dara1 14 LHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 92 (97)
T ss_dssp EEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cEEECCCCcEEEEEEEeEECCC-EEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence 3456789999999999999998 999999998765433222222223334699999999999999999999999887776
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 93 ~l~V 96 (97)
T d3dara1 93 HLDV 96 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.67 E-value=2.6e-17 Score=94.47 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=68.1
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... ....|.|.+++..|+|.|.|.+.|..|..
T Consensus 4 ~~P~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~- 81 (91)
T d1tnna_ 4 TKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ- 81 (91)
T ss_dssp BCCCCEECSSSSCCCEEEECCCSSCC-CCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC-
T ss_pred eCCcCEEEeCCCcEEEEEEEEEEeCC-eEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE-
Confidence 34677889999999999999999988 999999999887654333322 23569999999999999999999998876
Q ss_pred cceEEEEEE
Q psy10918 88 SNAFFLNVM 96 (207)
Q Consensus 88 ~~~~~l~v~ 96 (207)
...+.|.|+
T Consensus 82 ~~~~~l~V~ 90 (91)
T d1tnna_ 82 EAEFTLTIQ 90 (91)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEEEE
Confidence 445666654
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.3e-16 Score=91.52 Aligned_cols=80 Identities=21% Similarity=0.500 Sum_probs=66.6
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe-EecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+.|...+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+........ ...+++|.|.+++..|+|.|.|.+.|..+
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~ 80 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 80 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCC-eEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence 567777889999999999999999999988 9999999988876544433 34456899999999999999999998655
Q ss_pred CC
Q psy10918 85 DG 86 (207)
Q Consensus 85 ~~ 86 (207)
..
T Consensus 81 ~~ 82 (92)
T d1epfa2 81 GE 82 (92)
T ss_dssp TE
T ss_pred CE
Confidence 43
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.67 E-value=4.1e-17 Score=93.58 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=63.5
Q ss_pred CCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 98 SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
+|.+....+....+.+|+.+.|.|.+.|.|.| .+.|++++...... . ......|.|.++..+|+|.|+|.|.
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~~-----~--~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGSQTSK-----W--LSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEEEESCC-EEEEEECCSCCSCC-----C--SBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEEEEccCC-EEEEEecccccceE-----e--eeeeeEEEeCCCCccCCEEEEEEEE
Confidence 33333333455567899999999999999987 99999976543211 1 1122369999999999999999999
Q ss_pred cCCCCCccceEEEE
Q psy10918 178 NKIGHQRVPCVFHI 191 (207)
Q Consensus 178 n~~g~~~~~~~~~v 191 (207)
|..|..+..+.|.|
T Consensus 76 N~~G~~~~~~~l~V 89 (91)
T d1cs6a3 76 NIKGRDTYQGRIII 89 (91)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEE
Confidence 99998766655544
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.66 E-value=1.2e-16 Score=91.58 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=67.5
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
|....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ....+........|.|.++..+|+|.|.|.|.|..|..+.
T Consensus 6 P~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 83 (91)
T d1tnna_ 6 PRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLSTS-ARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA 83 (91)
T ss_dssp CCCEECSSSSCCCEEEECCCSSCC-CCEEESSSSTTCSS-SSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCE
T ss_pred CcCEEEeCCCcEEEEEEEEEEeCC-eEEEEEeecccccc-cceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEE
Confidence 444567899999999999999987 99999998776432 3344555666778999999999999999999999998866
Q ss_pred ceEEEE
Q psy10918 186 PCVFHI 191 (207)
Q Consensus 186 ~~~~~v 191 (207)
++.+.|
T Consensus 84 ~~~l~V 89 (91)
T d1tnna_ 84 EFTLTI 89 (91)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 655543
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.66 E-value=3e-16 Score=90.96 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=68.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE----ecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII----MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+..+.+|+++.|.|.+.+.|.+ .+.|++++..+......... ....+|.|.+++.+|+|.|.|.+.|..|...
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 88 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 88 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCC-CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred CCCEEEecCCeEEEEEEEEEecCC-EEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence 357788899999999999999887 89999999988754333222 2345799999999999999999999998776
Q ss_pred cceEEEEEE
Q psy10918 88 SNAFFLNVM 96 (207)
Q Consensus 88 ~~~~~l~v~ 96 (207)
+.++.|+|.
T Consensus 89 s~s~~L~Vl 97 (97)
T d1biha3 89 KHSLKLTVV 97 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 667777763
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.66 E-value=9.7e-17 Score=92.64 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=67.4
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
..+.+..+.+|+.+.|.|.+.+.|.+..+.|+++|..+....... ....+++|.|.+++.+|+|.|.|.+.|..|...+
T Consensus 7 ~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s 86 (94)
T d1biha1 7 DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASS 86 (94)
T ss_dssp CCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred ecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence 446677889999999999999988665899999999887544332 2334578999999999999999999999887655
Q ss_pred ceEEEE
Q psy10918 89 NAFFLN 94 (207)
Q Consensus 89 ~~~~l~ 94 (207)
..+.|.
T Consensus 87 ~~v~l~ 92 (94)
T d1biha1 87 RVISFR 92 (94)
T ss_dssp CCEEEE
T ss_pred EEEEEE
Confidence 555443
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.66 E-value=6.5e-17 Score=93.15 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+...+.+..+.+|+++.|.|.+.|.|.+ .+.|++++..+............ ..|.|.+++..|+|.|.|.+.|..|.
T Consensus 5 i~~~~~~~~v~~G~~~~l~c~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 83 (93)
T d1wiua_ 5 ILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE 83 (93)
T ss_dssp ECCCCCEEEECSSBCCEEEEEEECCSSC-EEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEE
T ss_pred EEeCCCcEEEeCCCeEEEEEEEEEecCC-eEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCE
Confidence 3445677889999999999999999988 99999999988765444333332 36999999999999999999999887
Q ss_pred CccceEEEEE
Q psy10918 86 GESNAFFLNV 95 (207)
Q Consensus 86 ~~~~~~~l~v 95 (207)
. +..+.|.|
T Consensus 84 ~-~~~~~l~V 92 (93)
T d1wiua_ 84 D-EAIFEVIV 92 (93)
T ss_dssp E-EEEEEEEE
T ss_pred E-EEEEEEEE
Confidence 6 44566655
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.65 E-value=1.5e-16 Score=90.75 Aligned_cols=77 Identities=29% Similarity=0.492 Sum_probs=63.1
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
...+.+|+++.|.|.+.+.|.+ .+.|++++.++... +....+..|.|.+++..|+|.|.|.+.|..|.. ...+.|
T Consensus 12 ~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~i~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l 86 (89)
T d1biha4 12 VIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLSGG---RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLV 86 (89)
T ss_dssp EEEECTTSCEEEECEEEEESCC-CCEEEETTEECCSS---SEEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEE
T ss_pred CEEEeCCCeEEEEEEEEEeCCC-EEEEEeCCccCccc---cEEEeeeeEEECCCChhhCEEEEEEEEECCCEE-EEEEEE
Confidence 3567889999999999999988 99999999988642 344456789999999999999999999988865 445555
Q ss_pred EE
Q psy10918 94 NV 95 (207)
Q Consensus 94 ~v 95 (207)
.|
T Consensus 87 ~V 88 (89)
T d1biha4 87 QV 88 (89)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.65 E-value=7.6e-16 Score=91.36 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=65.0
Q ss_pred CcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc------------eeEEeecCceEEEEEecCCC
Q psy10918 99 PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA------------QAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~------------~~~~~~~~~~~~l~i~~~~~ 166 (207)
|.+....+....+..|+.+.|.|.+.|.|.| .+.|++++........ ..........+.|.|.++..
T Consensus 5 P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 83 (109)
T d2fdbp2 5 PILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 83 (109)
T ss_dssp CEECTTCSCCEEECTTCCEEEEEEEECSSCC-EEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred CEEcCCCCCCEEEecCCcEEEEEEEEEcCCC-eEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence 4443333555678899999999999999998 9999987543211100 00111122346799999999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+|+|.|+|.|.|..|....++.|.|+
T Consensus 84 ~D~G~Y~C~a~N~~G~~~~~~~L~Vl 109 (109)
T d2fdbp2 84 EDAGEYTCLAGNSIGISFHSAWLTVL 109 (109)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred HHCeEEEEEEEECCCEEEEEEEEEEC
Confidence 99999999999999988777777653
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=3.6e-16 Score=90.72 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=64.1
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCe-E-e--cCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGI-I-M--TNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~-~-~--~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
...+....+..|+++.|.|.+.+.|....+.|+++ +..+........ . . ...+|.|.+++.+|+|.|+|.+.|..
T Consensus 4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 83 (97)
T d1epfa1 4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 83 (97)
T ss_dssp EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence 34466778899999999999998875449999994 444443222111 1 1 12469999999999999999999988
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
|.....++.|+|.
T Consensus 84 G~~~~~tv~l~V~ 96 (97)
T d1epfa1 84 GTQSEATVNVKIF 96 (97)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEE
Confidence 8654556777765
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.65 E-value=2.9e-16 Score=90.38 Aligned_cols=83 Identities=12% Similarity=0.197 Sum_probs=66.9
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.|.|.| .+.|++++..+... ........+....|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 9 ~~~~~v~~G~~~~l~c~~~g~P~p-~v~W~~~~~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~ 86 (93)
T d1wiua_ 9 SRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALA-PELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEA 86 (93)
T ss_dssp CCEEEECSSBCCEEEEEEECCSSC-EEEEECSSSSCBCS-TTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEE
T ss_pred CCcEEEeCCCeEEEEEEEEEecCC-eEEEEeeeeeceee-eeeeecccccceeeccccccccccEEEEEEEEECCCEEEE
Confidence 345567899999999999999998 99999998775433 3344555566778999999999999999999999998865
Q ss_pred ceEEE
Q psy10918 186 PCVFH 190 (207)
Q Consensus 186 ~~~~~ 190 (207)
.+.+.
T Consensus 87 ~~~l~ 91 (93)
T d1wiua_ 87 IFEVI 91 (93)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54444
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.5e-16 Score=92.84 Aligned_cols=82 Identities=16% Similarity=0.374 Sum_probs=64.3
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc--CCe--EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA--QGI--IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~--~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..++..|+++.|.|.+.|.|.+ .+.|++++..+..... ... ...+.+|.|.+++.+|+|.|.|.+.|..|.. ..
T Consensus 14 ~~t~~~G~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 91 (100)
T d1qz1a3 14 NATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ-DA 91 (100)
T ss_dssp EEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred eEEEcCCCCEEEEEEEEEecCC-EEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEE-EE
Confidence 3456789999999999999988 9999999998865322 111 1234679999999999999999999988866 55
Q ss_pred eEEEEEEe
Q psy10918 90 AFFLNVMY 97 (207)
Q Consensus 90 ~~~l~v~~ 97 (207)
.+.|.|..
T Consensus 92 ~~~l~V~~ 99 (100)
T d1qz1a3 92 SIHLKVFA 99 (100)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 67777763
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.65 E-value=1.8e-16 Score=90.80 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=63.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..... .....++.|.|.+++..|+|.|.|.+.|..|.. ...+
T Consensus 12 p~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~ 85 (91)
T d1cs6a3 12 PADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGSQTS----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQG 85 (91)
T ss_dssp CSEEEEETTCCEEEECEEEEESCC-EEEEEECCSCCSC----CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred CCcEEEecCCcEEEEEEEEEccCC-EEEEEecccccce----EeeeeeeEEEeCCCCccCCEEEEEEEEECCCEE-EEEE
Confidence 356678899999999999999988 9999997755432 223446789999999999999999999998876 4466
Q ss_pred EEEEE
Q psy10918 92 FLNVM 96 (207)
Q Consensus 92 ~l~v~ 96 (207)
.|.|+
T Consensus 86 ~l~V~ 90 (91)
T d1cs6a3 86 RIIIH 90 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 67765
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1e-15 Score=90.04 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=63.6
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeecccee-EEeecC--ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQA-HILRSG--TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+....+.|.+.|.|.| .+.|++++..+....... ....+. ..+.|.|.+++.+|+|.|+|.|+|..|..+.+ +
T Consensus 16 ~~~~~~i~~~v~G~P~P-~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~--~ 92 (105)
T d1wwca_ 16 LRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT--I 92 (105)
T ss_dssp CCCEEEEEEEEECSSCC-EEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE--E
T ss_pred EEEEEEEEEEEEEeCCC-eEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEE--E
Confidence 34556788999999998 999999998764332211 122222 24569999999999999999999999988555 5
Q ss_pred EEeecccCCCCC
Q psy10918 190 HIVSAVTFHPPF 201 (207)
Q Consensus 190 ~v~~~~~~~~p~ 201 (207)
.|.+..+|+|+.
T Consensus 93 ~v~V~~~P~P~~ 104 (105)
T d1wwca_ 93 NGHFLKEPFPVD 104 (105)
T ss_dssp EECCSCCCCCSC
T ss_pred EEEEEeCCCCCC
Confidence 566668888764
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.8e-17 Score=93.16 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=64.9
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeeeCCCCccc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNIEGDGESN 89 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~~~ 89 (207)
.+.+..+.+|+++.|.|.+.+.|.+ .++|++++..+..............|.|.+++.+|.| .|.|.+.|..|.. ..
T Consensus 8 ~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~-~~ 85 (92)
T d2ifga1 8 QVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-EV 85 (92)
T ss_dssp ECCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC-CE
T ss_pred eCCCEEEeCCCEEEEeeeccCCCCc-EEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEE-EE
Confidence 4667788999999999999999988 9999999987765433333334457999999999999 6999999998876 33
Q ss_pred eEEEE
Q psy10918 90 AFFLN 94 (207)
Q Consensus 90 ~~~l~ 94 (207)
++.|.
T Consensus 86 s~~l~ 90 (92)
T d2ifga1 86 SVQVN 90 (92)
T ss_dssp EECCC
T ss_pred EEEEE
Confidence 44443
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.64 E-value=2.1e-16 Score=90.10 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=60.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|+| .+.|++++..+. ..+..+. ++ .|.|.++...|+|.|+|.|.|..|.....
T Consensus 11 ~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~i~--~~~~~~~-~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 83 (89)
T d1biha4 11 KVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLS--GGRATVT-DS---GLVIKGVKNGDKGYYGCRATNEHGDKYFE 83 (89)
T ss_dssp SEEEECTTSCEEEECEEEEESCC-CCEEEETTEECC--SSSEEEE-TT---EEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEEEeCCC-EEEEEeCCccCc--cccEEEe-ee---eEEECCCChhhCEEEEEEEEECCCEEEEE
Confidence 33456789999999999999997 999999988753 2222222 22 38999999999999999999999987655
Q ss_pred eEEE
Q psy10918 187 CVFH 190 (207)
Q Consensus 187 ~~~~ 190 (207)
+.+.
T Consensus 84 ~~l~ 87 (89)
T d1biha4 84 TLVQ 87 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.8e-15 Score=88.45 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=64.7
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec-----cceeEEeecCceEEEEEecCC-CCCCeEEEEEEecC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN-----VAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNK 179 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~ 179 (207)
+....+.+|+.+.|.|.+.+.|++..+.|++++...... .....+...+..+.|.|.++. ..|+|.|+|.|.|.
T Consensus 9 ~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~ 88 (101)
T d3b5ha1 9 KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 88 (101)
T ss_dssp CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred CCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEEC
Confidence 344557799999999999999876589999875432211 122345556667889999998 57999999999999
Q ss_pred CCCCccceEEEE
Q psy10918 180 IGHQRVPCVFHI 191 (207)
Q Consensus 180 ~g~~~~~~~~~v 191 (207)
.|..+..+.|.|
T Consensus 89 ~G~~~~~~~L~V 100 (101)
T d3b5ha1 89 KGSDQAIITLRV 100 (101)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 998866665554
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.63 E-value=9.3e-17 Score=93.17 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=63.5
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC---eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+.+|+++.|.|.+.|.|.+ .+.|++|+.++....... ......+|.|.+++.+|+|.|.|.+.|..|.. ...+
T Consensus 15 ~~v~~G~~v~l~C~~~g~P~p-~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~ 92 (97)
T d3dara1 15 HAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTY 92 (97)
T ss_dssp EEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred EEECCCCcEEEEEEEeEECCC-EEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEEE
Confidence 356789999999999999988 999999999887543322 12334689999999999999999999988865 4466
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|+|
T Consensus 93 ~l~V 96 (97)
T d3dara1 93 HLDV 96 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-15 Score=85.94 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=63.2
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecccee-EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQA-HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ- 183 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~- 183 (207)
|....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....... ..........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred CeeEEEcCCCeEEEEEEEEecCCc-eEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence 445567899999999999999987 999999988754332211 12222334579999999999999999999999864
Q ss_pred ccceEEEE
Q psy10918 184 RVPCVFHI 191 (207)
Q Consensus 184 ~~~~~~~v 191 (207)
+..+.+.|
T Consensus 82 S~~~~l~V 89 (91)
T d1rhfa1 82 SQPVWLTV 89 (91)
T ss_dssp CCCEEEEE
T ss_pred EEEEEEEE
Confidence 44555443
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.8e-15 Score=90.23 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=63.8
Q ss_pred CCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcCceeeeccc--eeE----Eeec--CceEEEEEecCCCCCCeEEEE
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNVA--QAH----ILRS--GTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~--~~~----~~~~--~~~~~l~i~~~~~~~~g~y~C 174 (207)
.+....+..|+.+.|.|.+.|.|. .+.+.|++++........ ... .... ...+.|.|.++...|+|.|+|
T Consensus 6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 85 (113)
T d2dava1 6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC 85 (113)
T ss_dssp CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence 445567889999999999999883 239999998643221111 111 1111 124569999999999999999
Q ss_pred EEecCCCCCccceEEEEee
Q psy10918 175 WGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 175 ~~~n~~g~~~~~~~~~v~~ 193 (207)
.|.|..|..+..+.|.|..
T Consensus 86 ~a~N~~G~~~~~~~L~V~~ 104 (113)
T d2dava1 86 EVTYKDKFDSCSFDLEVHE 104 (113)
T ss_dssp EEECSSCEEEECCEEEEEC
T ss_pred EEEeCCCEEEEEEEEEEEc
Confidence 9999999887777776653
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.3e-15 Score=85.91 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=62.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.+.|.|.+.|.|+| .+.|++++..... ...........|.|.+++.+|+|.|+|.|.|..|..+.++.+
T Consensus 12 ~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v 86 (90)
T d1vcaa2 12 LAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (90)
T ss_dssp EEETTSCEEEEEEEESCSSC-EEEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCEEEEEEeccCCCCc-eEEEEecCcccee----eeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence 35689999999999999997 9999997765321 122234556679999999999999999999999988777666
Q ss_pred EEe
Q psy10918 190 HIV 192 (207)
Q Consensus 190 ~v~ 192 (207)
.|.
T Consensus 87 ~V~ 89 (90)
T d1vcaa2 87 EIY 89 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=4.7e-16 Score=90.72 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=63.2
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
.+..|+.+.|.|.+.|.|.| .+.|++++..+...... .........+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 16 t~~~G~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 94 (100)
T d1qz1a3 16 TANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 94 (100)
T ss_dssp ETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEEEEEEEecCC-EEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 34579999999999999997 99999998876433221 11222334467999999999999999999999998877766
Q ss_pred EEEe
Q psy10918 189 FHIV 192 (207)
Q Consensus 189 ~~v~ 192 (207)
+.|+
T Consensus 95 l~V~ 98 (100)
T d1qz1a3 95 LKVF 98 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.6e-16 Score=87.66 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+..+.+|++++|.|.+.+.|.| .+.|++++..+. ..+..|.|.+++.+|+|.|.|.+.|..|.. ...+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~~~--------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~-~~~~~v 77 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNI--------QGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDI 77 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCC-EEEEECTTCCEE--------EESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred CeEEECCCeEEEEEEeEcCCch-heEEEeecccce--------eeeeeeeeeecccccccEEEEEEEeCCCEE-EEEEEE
Confidence 4568899999999999999988 999999765433 345679999999999999999999988765 446667
Q ss_pred EEEeC
Q psy10918 94 NVMYS 98 (207)
Q Consensus 94 ~v~~~ 98 (207)
.|...
T Consensus 78 ~V~~~ 82 (84)
T d2nxyb2 78 VVLAF 82 (84)
T ss_dssp CEECC
T ss_pred EEEec
Confidence 77643
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.3e-15 Score=93.28 Aligned_cols=86 Identities=12% Similarity=0.213 Sum_probs=65.3
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc----------------------------ceeEEeecCceE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV----------------------------AQAHILRSGTLS 157 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 157 (207)
+....+..|+.++|.|.+.|.|.| .+.|++++..+.... .+..+......+
T Consensus 16 ~~~v~v~~G~~v~L~C~v~G~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 94 (130)
T d1gxea_ 16 PDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS 94 (130)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCC-EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred CCCEEEEcCCeEEEEEEEEEecCC-eEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence 455667899999999999999997 999999765432110 012333445567
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|.|.++..+|+|.|+|.|.|..|.....+.|.|+
T Consensus 95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 89999999999999999999999988666665543
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=1.7e-15 Score=86.35 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=63.8
Q ss_pred ecCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 11 SLNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
.+....+.+|+++.|.|.+. +.|.+ .+.|++++..+... .....++.|.|.+++..|+|.|.|.+.|..|.. ..
T Consensus 8 ~p~~~~v~~G~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~ 82 (89)
T d1gl4b_ 8 EQRSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNGKLPS---RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QG 82 (89)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGBCCCT---TEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred CCCeEEEeCCCcEEEEEEccCCCCCC-EEEEecCCceeecc---ccEeeceEEEEecCCcccCEEEEEEEEECCCEE-EE
Confidence 34567788999999999997 55666 99999998876543 234456789999999999999999999998865 44
Q ss_pred eEEEEE
Q psy10918 90 AFFLNV 95 (207)
Q Consensus 90 ~~~l~v 95 (207)
.+.|.|
T Consensus 83 ~~~l~V 88 (89)
T d1gl4b_ 83 TATLHV 88 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 566665
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=7.2e-16 Score=88.26 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=59.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.+........+.+|+++.|.|.+.+.+++.+|.|+|++..+.... ......+.+|.|.+++.+|+|.|+|.+.|.
T Consensus 8 ~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 82 (93)
T d1n26a1 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP-SRWAGMGRRLLLRSVQLHDSGNYSCYRAGR 82 (93)
T ss_dssp CCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC-EEEEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred cEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccccccee-eEEecCCCEEEECCCChhcCEEEEEEECCc
Confidence 334445667788899999999998876544899999998886643 334456788999999999999999998754
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-15 Score=87.22 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=61.1
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+|+++.|.|.+.+ +.+ .+.|++++..+...........+++|.|.+++.+|+|.|.|.+.|..+..
T Consensus 4 ~~~~~~~~G~~~~l~C~~~g-~~~-~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~ 76 (92)
T d1olza1 4 YRQHFFKHGGTAELKCSQKS-NLA-RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK 76 (92)
T ss_dssp EEEEEEETTSCEEECCCCSC-TTC-EEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred hhheeEeCCCEEEEEEEeec-cCC-ceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence 44567899999999999988 445 89999999988765555555667789999999999999999999987754
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.7e-15 Score=85.36 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=59.4
Q ss_pred eeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 108 VLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...+..|+.+.|.|.+. +.|.+ .+.|++.+..+.. .......+.|.|.+++.+|+|.|+|.|+|..|..+.+
T Consensus 12 ~~~~~~G~~~~l~C~~~~g~p~p-~v~W~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s 84 (90)
T d1gsma1 12 VVAVALGASRQLTCRLACADRGA-SVQWRGLDTSLGA------VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 84 (90)
T ss_dssp EEEEETTCCEEEEEEECCSSTTC-EEEEESSTTTTCC------EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred eEEEEeCCcEEEEEEecCCCCcc-EEEEEEeeeeeee------eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence 34567999999999886 56676 9999987765421 1223456789999999999999999999998877666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 85 ~~l~V 89 (90)
T d1gsma1 85 VQLLV 89 (90)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.60 E-value=1.5e-15 Score=88.01 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=62.4
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc-c
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR-V 185 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~ 185 (207)
...+..|+.+.|.|.+.|.|.+ .+.|++++..+...... ...........|.|.+++.+|+|.|+|.|.|..|... .
T Consensus 12 ~~~~~~G~~v~l~C~~~g~P~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 90 (97)
T d1biha3 12 DMMAKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90 (97)
T ss_dssp SEEEETTSCEEEEEEEECSSCC-CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred CEEEecCCeEEEEEEEEEecCC-EEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence 3456799999999999999887 99999998876533221 1222223345799999999999999999999999753 3
Q ss_pred ceEEEE
Q psy10918 186 PCVFHI 191 (207)
Q Consensus 186 ~~~~~v 191 (207)
++.|.|
T Consensus 91 s~~L~V 96 (97)
T d1biha3 91 SLKLTV 96 (97)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455554
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.60 E-value=1.7e-15 Score=86.25 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=62.5
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+..|+.+.|.|.+.|.|.| .+.|+++|..+... .+..+ .. ..|.|.++..+|+|.|+|.|.|..|....
T Consensus 8 ~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~-~~~~~--~~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (89)
T d1cs6a4 8 ITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLASQ-NRIEV--SG--GELRFSKLVLEDSGMYQCVAENKHGTVYA 81 (89)
T ss_dssp CCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECCCC-SSEEE--ET--TEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEEEEcCC-EEEEEEeecccccc-ceeee--ee--eeEEEEeecccCCEEEEEEEEeCCCEEEE
Confidence 344567899999999999999997 99999998875432 22222 22 25899999999999999999999998766
Q ss_pred ceEEEE
Q psy10918 186 PCVFHI 191 (207)
Q Consensus 186 ~~~~~v 191 (207)
++.|.|
T Consensus 82 ~~~l~V 87 (89)
T d1cs6a4 82 SAELTV 87 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666655
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.4e-15 Score=87.15 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=62.9
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.+.|.|.+.|.|.| .+.|++++..+............. ..|.|.++...|+|.|+|.|.|..+....
T Consensus 8 P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~ 84 (92)
T d1epfa2 8 PTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN--NYLQIRGIKKTDEGTYRCEGRILARGEIN 84 (92)
T ss_dssp CSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTT--SCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred CCCEEEeCCCcEEEEEEEeecCCC-eEEEEEcCcccccccceeeeeeee--eeEEECCCCHHhCEEEEEEEEECcCCEEE
Confidence 344567899999999999999987 999999988765443222222222 24899999999999999999998876655
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
...+.|+
T Consensus 85 ~~~i~Vi 91 (92)
T d1epfa2 85 FKDIQVI 91 (92)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555554
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.3e-15 Score=86.67 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=62.5
Q ss_pred eeeecCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+........+.+|+++.|.|.+. +.|.+ .+.|++.+.++... ......+.|.|.+++.+|+|.|.|.+.|..+..
T Consensus 6 i~~p~~~~~~~~G~~~~l~C~~~~g~p~p-~v~W~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~ 81 (90)
T d1gsma1 6 VEPPEPVVAVALGASRQLTCRLACADRGA-SVQWRGLDTSLGAV---QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF 81 (90)
T ss_dssp EESCCSEEEEETTCCEEEEEEECCSSTTC-EEEEESSTTTTCCE---EEESSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred EeCCCCeEEEEeCCcEEEEEEecCCCCcc-EEEEEEeeeeeeee---eccCceeeEEcCccChhhCCcEEEEEEeCCCcE
Confidence 33344456677899999999885 67776 99999988776431 122234679999999999999999999987754
Q ss_pred ccceEEEEEE
Q psy10918 87 ESNAFFLNVM 96 (207)
Q Consensus 87 ~~~~~~l~v~ 96 (207)
..++.|.|+
T Consensus 82 -~~s~~l~Vy 90 (90)
T d1gsma1 82 -QHTVQLLVY 90 (90)
T ss_dssp -EEEEEEEEE
T ss_pred -EEEEEEEEC
Confidence 556677663
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=1.2e-15 Score=86.98 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=59.3
Q ss_pred CceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+....+.+|+.+.|.|.+.+ .|.+ .+.|++++..+.... ....++ .|.|.++..+|+|.|+|.|.|..|..+
T Consensus 9 p~~~~v~~G~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~~---~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 81 (89)
T d1gl4b_ 9 QRSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNGKLPSR---AMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQ 81 (89)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGBCCCTT---EEEETT---EEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred CCeEEEeCCCcEEEEEEccCCCCCC-EEEEecCCceeeccc---cEeece---EEEEecCCcccCEEEEEEEEECCCEEE
Confidence 34456789999999999985 5555 999999887643221 122222 599999999999999999999999876
Q ss_pred cceEEEE
Q psy10918 185 VPCVFHI 191 (207)
Q Consensus 185 ~~~~~~v 191 (207)
.++.+.|
T Consensus 82 ~~~~l~V 88 (89)
T d1gl4b_ 82 GTATLHV 88 (89)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6655544
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.59 E-value=5.1e-15 Score=83.42 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=63.6
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
|+..+. ..+....+.+|++++|.|.+.+.+.+..+.|++|+..+... +..|.|.+++.+|+|.|.|.+.|
T Consensus 3 pkp~i~--~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~--------~~~l~i~~v~~~dsG~Y~C~a~n 72 (85)
T d2fcba1 3 PKAVLK--LEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQ 72 (85)
T ss_dssp CBCEEE--EESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEECTT
T ss_pred CCCEEE--ECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc--------ccceEEeeccccCCcEEEEECCC
Confidence 444444 33566778999999999999888777689999999877542 45799999999999999999986
Q ss_pred eCCCCccceEEEEEE
Q psy10918 82 IEGDGESNAFFLNVM 96 (207)
Q Consensus 82 ~~~~~~~~~~~l~v~ 96 (207)
..+ +..+.|.|.
T Consensus 73 s~~---S~~v~l~V~ 84 (85)
T d2fcba1 73 TSL---SDPVHLTVL 84 (85)
T ss_dssp SBC---CCCEEEEEE
T ss_pred Ccc---cccEEEEEE
Confidence 543 456677764
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-15 Score=84.35 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=55.7
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-c
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-R 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~ 184 (207)
+....+..|+.+.|.|.+.|.|.|.+|.|+++|..+.... .. .+.|.....+|+|.|+|.|.|..|.. +
T Consensus 8 P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-------~~---~~~l~~~~~~d~G~Y~C~A~N~~G~~~S 77 (85)
T d1rhfa2 8 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PS---PSVLNVTGVTQSTMFSCEAHNLKGLASS 77 (85)
T ss_dssp CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-------ES---SEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred CCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-------Cc---ceEEecCCccccEEEEEEEEcCCCcEEE
Confidence 3445577999999999999998866999999987653221 11 13445566689999999999999954 4
Q ss_pred cceEEEE
Q psy10918 185 VPCVFHI 191 (207)
Q Consensus 185 ~~~~~~v 191 (207)
+.+.+.|
T Consensus 78 ~~~~v~V 84 (85)
T d1rhfa2 78 RTATVHL 84 (85)
T ss_dssp CCEEEEE
T ss_pred EEEEEEE
Confidence 4556554
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.7e-15 Score=86.50 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=61.5
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+.+|+++.|.|.+.+.|.+ .+.|++++..+.... ........+|.|.+++.+|+|.|.|.+.|..|.. +..+.|.
T Consensus 11 ~~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~v~ 87 (90)
T d1vcaa2 11 YLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGK-VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVE 87 (90)
T ss_dssp EEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCSSE-EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEE
T ss_pred EEEECCCEEEEEEeccCCCCc-eEEEEecCccceeee-eeeecCCcEEEEecccccccceEEEEEEeCCCEE-EEEEEEE
Confidence 445689999999999999988 999999877654321 1222334579999999999999999999988865 5566776
Q ss_pred EE
Q psy10918 95 VM 96 (207)
Q Consensus 95 v~ 96 (207)
|.
T Consensus 88 V~ 89 (90)
T d1vcaa2 88 IY 89 (90)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-15 Score=85.90 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=56.9
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.+|+.++|.|.+.|.|+| .+.|++++..... . ...|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus 10 ~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~~~~---------~--~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v 77 (84)
T d2nxyb2 10 HLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNIQ---------G--GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 77 (84)
T ss_dssp CEETTCCEEEEEECCTTCCC-EEEEECTTCCEEE---------E--SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCeEEEEEEeEcCCch-heEEEeeccccee---------e--eeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence 46799999999999999998 9999997765321 1 1248899999999999999999999987665444
Q ss_pred EEe
Q psy10918 190 HIV 192 (207)
Q Consensus 190 ~v~ 192 (207)
.|+
T Consensus 78 ~V~ 80 (84)
T d2nxyb2 78 VVL 80 (84)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.6e-15 Score=85.66 Aligned_cols=88 Identities=11% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce--eEEeecC--ceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ--AHILRSG--TLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+....+..|+.+.|.|.+.+.|.++.+.|++++..+...... ....... ....|.|.++..+|+|.|+|.|.|..
T Consensus 9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 88 (104)
T d2aw2a1 9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS 88 (104)
T ss_dssp TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence 4455567899999999999999853399999988765433222 2222222 24569999999999999999999999
Q ss_pred CCC-ccceEEEEe
Q psy10918 181 GHQ-RVPCVFHIV 192 (207)
Q Consensus 181 g~~-~~~~~~~v~ 192 (207)
|.. +.++.+.|.
T Consensus 89 G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 89 NLIESHSTTLYVT 101 (104)
T ss_dssp EEEECCCEEEEEE
T ss_pred CeEEEEEEEEEEE
Confidence 864 345566554
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9e-16 Score=90.14 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=64.0
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-Ce--EecC----CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GI--IMTN----QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~--~~~~----~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+....+..|+++.|.|.+.+.|..+.+.|+|++..+...... .. ...+ ..|.|.+++.+|+|.|.|.+.|..
T Consensus 9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 88 (104)
T d2aw2a1 9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS 88 (104)
T ss_dssp TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence 4456678899999999999998852399999988766432221 11 1111 249999999999999999999988
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
|...+.++.|.|.
T Consensus 89 G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 89 NLIESHSTTLYVT 101 (104)
T ss_dssp EEEECCCEEEEEE
T ss_pred CeEEEEEEEEEEE
Confidence 8765667777775
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.58 E-value=4e-15 Score=85.71 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=60.2
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+....+.+|+.+.|.|.+.+.|.|..+.|+++|..+.......... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 84 (94)
T d1biha1 8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGSLVFLRPQASDEGHYQCFAETPAGVA 84 (94)
T ss_dssp CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC--TTSCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec--ccceEEEEeccChhcCeEEEEEEEeCCCEE
Confidence 34556678999999999999998766899999998765433333232 223359999999999999999999999864
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.58 E-value=4.4e-15 Score=83.48 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 1 ~p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
||+..+.+. +....+.+|++++|.|.+.+.+.+..+.|++++..+.. .+.+|.|.+++..|+|.|+|.+.
T Consensus 3 lPkpvi~~~--P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~a~ 72 (84)
T d1fnla1 3 LPKAVVFLE--PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTN 72 (84)
T ss_dssp CCCCEEEEE--SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECS
T ss_pred CCCCEEEEC--CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee--------cceeeEecCCcccCCEEEEEEcc
Confidence 466555544 56677899999999999998887756778898876543 24679999999999999999987
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
+... +..+.|.|
T Consensus 73 ~s~~---S~~v~L~V 84 (84)
T d1fnla1 73 LSTL---SDPVQLEV 84 (84)
T ss_dssp SSCC---CCCEEEEE
T ss_pred CCCc---cccEEEEC
Confidence 6433 45666654
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.4e-14 Score=84.63 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=61.6
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeec---CceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRS---GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
.++...+.|.+.|.|.| .+.|+++|..+...... ...... ...+.|.|.+++..|+|.|+|.|+|..|..+..
T Consensus 15 ~~~~~~i~~~v~G~P~P-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~-- 91 (103)
T d1wwbx_ 15 SDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-- 91 (103)
T ss_dssp CCCEEEEEEEEECSSCC-EEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE--
T ss_pred cceeEEEEEEEEEeCCC-EEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEE--
Confidence 56778899999999998 99999999876532211 112111 124579999999999999999999999988555
Q ss_pred EEEeecccCC
Q psy10918 189 FHIVSAVTFH 198 (207)
Q Consensus 189 ~~v~~~~~~~ 198 (207)
+.|.+.++|+
T Consensus 92 ~~v~V~~~P~ 101 (103)
T d1wwbx_ 92 ISAHFMGWPG 101 (103)
T ss_dssp EEECCSCCCC
T ss_pred EEEEEEeCCC
Confidence 5556666664
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.4e-14 Score=83.27 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=57.7
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
...+..|+.+.|.|.+. .|++ .+.|+++|..+........+...+..+.|.|.++...|+|.|+|.|.|.
T Consensus 15 ~~~v~~G~~v~l~c~v~-~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 84 (94)
T d1pd6a_ 15 AYQVSKGHKIRLTVELA-DHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 84 (94)
T ss_dssp EEEEETTSCEEEEEECS-SSSS-CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred CEEECcCCeEEEEEEEC-CCCc-eEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence 34578999999999985 4666 9999999998765444556666777788999999999999999999874
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.4e-14 Score=83.84 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=56.7
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcC-ceeeeccceeEE-eecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNN-SAETVNVAQAHI-LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+..|+.+.|.|.+.+.|+++.+.|++++ ..+......... ......+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 10 ~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 86 (97)
T d1epfa1 10 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 86 (97)
T ss_dssp EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred EEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence 457899999999999998864499999954 333322223332 233456789999999999999999999999864
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.57 E-value=1.4e-15 Score=88.20 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=64.2
Q ss_pred eeeecCCCcccCC---CcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-CCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 8 LGRSLNPDHIKED---SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-NQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 8 ~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
|...+.+..+.+| +++.|.|.+.+.|.+ .++|++++..+........... +..|.|..++.+|+|.|.|.+.|..
T Consensus 7 f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p-~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~ 85 (97)
T d1cs6a1 7 FEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNAR 85 (97)
T ss_dssp EEECCCCEEEETTCSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETT
T ss_pred EEEeCCCEEEECccCCCeEEEEEEEEEeCCC-EEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECC
Confidence 3444556555555 689999999999988 9999999998876544444433 4456777788899999999999999
Q ss_pred CCCccceEEEE
Q psy10918 84 GDGESNAFFLN 94 (207)
Q Consensus 84 ~~~~~~~~~l~ 94 (207)
|...+..+.|+
T Consensus 86 G~~~S~~a~L~ 96 (97)
T d1cs6a1 86 GTVVSREASLR 96 (97)
T ss_dssp EEEECCCEEEE
T ss_pred CEEEEEEEEEe
Confidence 87656555553
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.57 E-value=4.1e-15 Score=84.32 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=56.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.+|+.+.|.|.+.+.+++..+.|++++..+.. ......|.|.+++.+|+|.|.|.|.|..|... +..+
T Consensus 11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~---------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~-S~~v 80 (88)
T d2fcba2 11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF---------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYS-SKPV 80 (88)
T ss_dssp EECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE---------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEE-CCCE
T ss_pred eEecCCeEEEEEEecCCCCCcEEEEEeecccccc---------cccccccccCccCHHHCCeEEEEEEeCCCCEE-eeeE
Confidence 3678999999999987655559999999876432 12234588999999999999999999887542 2234
Q ss_pred EEeecc
Q psy10918 190 HIVSAV 195 (207)
Q Consensus 190 ~v~~~~ 195 (207)
.|.+.+
T Consensus 81 ~l~V~~ 86 (88)
T d2fcba2 81 TITVQA 86 (88)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 444443
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.4e-15 Score=87.08 Aligned_cols=88 Identities=11% Similarity=-0.005 Sum_probs=62.7
Q ss_pred CCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcCceeeeccce--eE----Eeec--CceEEEEEecCCCCCCeEEEE
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNVAQ--AH----ILRS--GTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~--~~----~~~~--~~~~~l~i~~~~~~~~g~y~C 174 (207)
.+....+..|+.+.|.|.+.|.|. .+.+.|++++......... .. .... ...+.|.|.+++..|+|.|+|
T Consensus 10 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 89 (110)
T d2avga1 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRC 89 (110)
T ss_dssp CCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEE
T ss_pred CCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEE
Confidence 344556789999999999999883 1389999976542221111 11 1111 124579999999999999999
Q ss_pred EEecCCCCCccceEEEEe
Q psy10918 175 WGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 175 ~~~n~~g~~~~~~~~~v~ 192 (207)
.|+|..|..+.++.|.|.
T Consensus 90 ~a~N~~G~~~~~~~L~V~ 107 (110)
T d2avga1 90 EVSTKDKFDCSNFNLTVH 107 (110)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEECCCeEEEEEEEEEE
Confidence 999999998777666554
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.8e-15 Score=82.92 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=59.2
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
|.+++. +....+.+|++++|.|.+.+.+.+..+.|++++..+.. .+..|.|.+++.+|+|.|.|.+.+
T Consensus 2 P~It~~----P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~v~~~d~G~Y~C~a~~ 69 (82)
T d1f2qa1 2 PKVSLN----PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQQ 69 (82)
T ss_dssp CCCEEE----SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred CEEEEc----CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec--------ccceeEECCCChhhCCcEEEEecC
Confidence 445553 56677899999999999999887756778998876653 246799999999999999999976
Q ss_pred eCCCCccceEEEEEE
Q psy10918 82 IEGDGESNAFFLNVM 96 (207)
Q Consensus 82 ~~~~~~~~~~~l~v~ 96 (207)
... +..+.|.|.
T Consensus 70 s~~---S~~v~l~V~ 81 (82)
T d1f2qa1 70 VNE---SEPVYLEVF 81 (82)
T ss_dssp SSC---CCCEEEEEE
T ss_pred CCC---cccEEEEEE
Confidence 533 556677764
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.56 E-value=5e-15 Score=84.10 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCV 188 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~ 188 (207)
.+.+|+.+.|.|.+.+.+++..+.|++||..+... .....|.|.+++.+|+|.|.|.|.|..|.. +..+.
T Consensus 13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~---------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~ 83 (89)
T d1fnla2 13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 83 (89)
T ss_dssp EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred eEccCCeEEEEEEecCCCCCcEEEEEEccccccee---------ccccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence 36799999999999876655699999998764321 112247899999999999999999988754 34555
Q ss_pred EEEe
Q psy10918 189 FHIV 192 (207)
Q Consensus 189 ~~v~ 192 (207)
+.|.
T Consensus 84 itV~ 87 (89)
T d1fnla2 84 ITIT 87 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.9e-15 Score=88.30 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=66.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC---CCcEEEEEECCccccc-cccCCeE----------ecCCeEEEEecCCCCCe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHH-NIAQGII----------MTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~-~~~~~~~----------~~~~~l~i~~~~~~d~g 73 (207)
|...+.+..+.+|++++|.|.+.+.| .+ .+.|++++..... .....+. .....|.|.+++..|+|
T Consensus 3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 81 (113)
T d2dava1 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG 81 (113)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCC-EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred EeECCceEEEeCCCEEEEEEEEccCCCCCCC-EEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence 44567888999999999999999887 35 8999998754321 1111111 01135999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEeCCc
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 100 (207)
.|+|.+.|..|.. +..+.|.|..++.
T Consensus 82 ~Y~C~a~N~~G~~-~~~~~L~V~~~~~ 107 (113)
T d2dava1 82 NYRCEVTYKDKFD-SCSFDLEVHESTG 107 (113)
T ss_dssp EEEEEEECSSCEE-EECCEEEEECCCC
T ss_pred EEEEEEEeCCCEE-EEEEEEEEEcCCC
Confidence 9999999998876 5567788875543
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.4e-14 Score=85.84 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC---CCcEEEEEECCccccc-cccCCeEe----------cCCeEEEEecCCCCCe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHH-NIAQGIIM----------TNQSLVLQRVNRQSAG 73 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~-~~~~~~~~----------~~~~l~i~~~~~~d~g 73 (207)
|...+.+..+..|++++|.|.+.+.| .+ .+.|++++..... .....+.. ....|.|.+++..|+|
T Consensus 7 Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 85 (110)
T d2avga1 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG 85 (110)
T ss_dssp EEECCCCEEEETTSEEEEEEEEECCSCSSSC-EEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred eEECCCeEEEECCCCEEEEEeecCCCCCCCC-EEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence 34457788899999999999999887 34 8999998754332 11122111 1235999999999999
Q ss_pred eeEEEEeeeCCCCccceEEEEEEe
Q psy10918 74 NYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 74 ~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
.|.|.+.|..|.. +..+.|.|..
T Consensus 86 ~Y~C~a~N~~G~~-~~~~~L~V~~ 108 (110)
T d2avga1 86 GYRCEVSTKDKFD-CSNFNLTVHE 108 (110)
T ss_dssp EEEEEEEETTEEE-EEEEEEEEES
T ss_pred EEEEEEEECCCeE-EEEEEEEEEe
Confidence 9999999988877 5577788764
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.4e-15 Score=83.99 Aligned_cols=78 Identities=14% Similarity=-0.021 Sum_probs=58.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.+|+.+.|.|.+.+.+++..+.|+++|..+.. ......|.|.+++.+|+|.|.|.|.|..+.. .+..+
T Consensus 11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~---------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~-~S~~v 80 (89)
T d1f2qa2 11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY---------WYENHNISITNATVEDSGTYYCTGKVWQLDY-ESEPL 80 (89)
T ss_dssp EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS---------CCCSSEEEESSCCGGGCEEEEEEEEETTEEE-ECCCE
T ss_pred eEeCCCEEEEEEEecCCCCCeEEEEEEeeecccc---------ccccceEEEeeeeeecCcEEEEEEEeCCCCe-EeeeE
Confidence 4679999999999988766679999999876432 1223458899999999999999999987653 23334
Q ss_pred EEeecccC
Q psy10918 190 HIVSAVTF 197 (207)
Q Consensus 190 ~v~~~~~~ 197 (207)
.|.+..+|
T Consensus 81 ~i~V~~~P 88 (89)
T d1f2qa2 81 NITVIKAP 88 (89)
T ss_dssp EEEEECSC
T ss_pred EEEEEeCC
Confidence 45554544
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.9e-15 Score=87.16 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=62.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc----------cCCeEecCCeEEEEecCCCCCeeeE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI----------AQGIIMTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+........+.+|+++.|.|.+.+.|.+ .+.|++++..+.... ..+....+.+|.|.+++.+|+|.|.
T Consensus 6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (105)
T d1nbqa1 6 TVHSSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT 84 (105)
T ss_dssp EEECSCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred EEECCCCeEEEeCCCeEEEEEEeCCCCCC-eeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence 34445566778999999999999999987 999999876554211 1122334568999999999999999
Q ss_pred EEEeeeCCCCcc
Q psy10918 77 CVGFNIEGDGES 88 (207)
Q Consensus 77 C~~~~~~~~~~~ 88 (207)
|.+.|..|....
T Consensus 85 C~a~n~~G~~~~ 96 (105)
T d1nbqa1 85 CMVSEEGGNSYG 96 (105)
T ss_dssp EEEEETTSSCEE
T ss_pred EEEEECCCCEEE
Confidence 999999887743
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.5e-14 Score=85.10 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=57.9
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeE-EeecC-----ceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH-ILRSG-----TLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
+++...+.|.+.|.|.| .+.|++++..+........ ..... ..+.|.|.++...|+|.|+|.|.|..|...++
T Consensus 14 ~~~~~ci~~~v~G~P~P-~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~ 92 (107)
T d1he7a_ 14 EMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 92 (107)
T ss_dssp CCCEEEEEEEECCSSCC-EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEEEEEecCC-eEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence 34455567799999998 9999999987653322211 11111 24569999999999999999999999988666
Q ss_pred eEEEEeecccC
Q psy10918 187 CVFHIVSAVTF 197 (207)
Q Consensus 187 ~~~~v~~~~~~ 197 (207)
+.+. +..+|
T Consensus 93 i~v~--v~~~P 101 (107)
T d1he7a_ 93 IMAA--FMDNP 101 (107)
T ss_dssp EEEC--CCSCT
T ss_pred EEEE--EEcCC
Confidence 5544 44444
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.6e-14 Score=82.33 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=62.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe--EecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--IMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+..++.+..+.+|+++.|.|.+. .|.+ .+.|++++.++........ ...+ .+|.|.+++.+|+|.|.|.+.|.
T Consensus 3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~- 79 (90)
T d1x44a1 3 VTKQLEDTTAYCGERVELECEVS-EDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG- 79 (90)
T ss_dssp CSBCCCCEEEETTEEEEEEEECS-SSSC-CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred EEcCCCCEEEeCCCcEEEEEEEC-CCCc-eEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-
Confidence 45667888999999999999984 4666 8999999988876443332 2222 36999999999999999999764
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
..+..|.|.
T Consensus 80 ----~~~a~l~V~ 88 (90)
T d1x44a1 80 ----QSSAKLSVD 88 (90)
T ss_dssp ----EEEEEEEEE
T ss_pred ----eEEEEEEEE
Confidence 234556665
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6.1e-16 Score=86.74 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|+.+.|.|.+.|.|.+ .+.|++++..+... +.+.+++..|+|.|.|.+.|..|.. +..+
T Consensus 11 p~~~~~~~G~~~~l~C~a~G~P~P-~v~W~k~g~~~~~~-----------~~~~~v~~~d~G~Y~C~A~N~~G~~-~~~~ 77 (84)
T d2oz4a3 11 PGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFPLPI-----------GESVTVTRDLEGTYLCRARSTQGEV-TREV 77 (84)
T ss_dssp CSEEEEETTCEECCCCCCEEESCC-EEEEEETTTEECCT-----------TSCEECCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred CccEEEeCCCEEEEEEEEeEcCcc-EEEEEEeeccceee-----------eeeeccccCCCCEEEEEEEcCCCEE-EEEE
Confidence 455678899999999999999998 99999998765532 2345678999999999999998865 5567
Q ss_pred EEEEEe
Q psy10918 92 FLNVMY 97 (207)
Q Consensus 92 ~l~v~~ 97 (207)
.|+|..
T Consensus 78 ~l~V~~ 83 (84)
T d2oz4a3 78 TVNVLS 83 (84)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 787764
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.1e-16 Score=94.77 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=70.2
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEE----eecCceEEEEEecCCCC
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHI----LRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~----~~~~~~~~l~i~~~~~~ 167 (207)
|+|..+|.+.. +....+.+|+.+.|.|.+.+.+++..+.|++++..+.... ....+ ..++..+.|.|.++..+
T Consensus 2 L~V~~Pp~i~~--~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~ 79 (115)
T d2crya1 2 LTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA 79 (115)
T ss_dssp CCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred eEEecCCEEec--CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence 34555554332 2333467899999999999976655899999887754322 11111 12223457999999999
Q ss_pred C-CeEEEEEEecCCCCCccceEEEEeecccCCCC
Q psy10918 168 D-YGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200 (207)
Q Consensus 168 ~-~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p 200 (207)
| +|.|+|.|.|..|..+..+.|.|.....+.|+
T Consensus 80 D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~~~~P~ 113 (115)
T d2crya1 80 DFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113 (115)
T ss_dssp HHHSCEEEEEECSSCEEEEEECCCCSCSSCCCCC
T ss_pred cCCeEEEEEEEECCCeEEEEEEEEEECCCCCCCC
Confidence 8 69999999999998866655554433344443
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=2.8e-14 Score=84.59 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=59.2
Q ss_pred eeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccce-------eEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 110 GVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQ-------AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..|+.+.|.|.+. +.|++ .+.|++++..+...... ...........|.|.+++.+|+|.|+|.|.|..|
T Consensus 13 ~v~~G~~v~L~C~~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G 91 (110)
T d1f97a2 13 SVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 91 (110)
T ss_dssp EEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred EEecCCeEEEEEEeecCCCCC-EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence 467899999999986 67776 99999988764322111 1111222344689999999999999999999999
Q ss_pred CCccceEEEEeec
Q psy10918 182 HQRVPCVFHIVSA 194 (207)
Q Consensus 182 ~~~~~~~~~v~~~ 194 (207)
...++..+.+.+.
T Consensus 92 ~~~~s~~v~l~V~ 104 (110)
T d1f97a2 92 TAMRSEAAHMDAV 104 (110)
T ss_dssp CCEECCCEEEEEE
T ss_pred cEEEEEEEEEEEE
Confidence 8765544544443
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.7e-15 Score=91.16 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=63.3
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-----------------------------CeEe--cC
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-----------------------------GIIM--TN 59 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-----------------------------~~~~--~~ 59 (207)
.++...+.+|++++|.|.+.|.|.+ .+.|++++..+...... .+.. ..
T Consensus 15 ~~~~v~v~~G~~v~L~C~v~G~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 93 (130)
T d1gxea_ 15 IPDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR 93 (130)
T ss_dssp CCCEEEESSSSCCCCEEECCSBSCC-EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTE
T ss_pred CCCCEEEEcCCeEEEEEEEEEecCC-eEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCE
Confidence 4567788899999999999999988 99999988666431100 0001 11
Q ss_pred CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.+|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|.
T Consensus 94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 129 (130)
T d1gxea_ 94 SIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI 129 (130)
T ss_dssp EEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred EEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence 359999999999999999999998876 556666664
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.9e-15 Score=84.67 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=56.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+.. .+ .+.+++.+|+|.|.|.|.|..|..+..
T Consensus 12 ~~~~~~~G~~~~l~C~a~G~P~P-~v~W~k~g~~~~~---------~~-----~~~~v~~~d~G~Y~C~A~N~~G~~~~~ 76 (84)
T d2oz4a3 12 GNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFPLP---------IG-----ESVTVTRDLEGTYLCRARSTQGEVTRE 76 (84)
T ss_dssp SEEEEETTCEECCCCCCEEESCC-EEEEEETTTEECC---------TT-----SCEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred ccEEEeCCCEEEEEEEEeEcCcc-EEEEEEeecccee---------ee-----eeeccccCCCCEEEEEEEcCCCEEEEE
Confidence 44567789999999999999998 9999998876431 11 234678899999999999999987666
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 77 ~~l~V~ 82 (84)
T d2oz4a3 77 VTVNVL 82 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666554
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=3.4e-14 Score=84.18 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=60.0
Q ss_pred CcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCC----------eEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 15 DHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQG----------IIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..+.+|+++.|.|.+. +.|.+ .++|++++..+....... .......|.|.+++.+|+|.|+|.+.|..
T Consensus 12 ~~v~~G~~v~L~C~~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~ 90 (110)
T d1f97a2 12 SSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 90 (110)
T ss_dssp SEEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred CEEecCCeEEEEEEeecCCCCC-EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence 4578999999999985 67776 999999998775432111 11223469999999999999999999998
Q ss_pred CCCc-cceEEEEEE
Q psy10918 84 GDGE-SNAFFLNVM 96 (207)
Q Consensus 84 ~~~~-~~~~~l~v~ 96 (207)
|... +..++|.|.
T Consensus 91 G~~~~s~~v~l~V~ 104 (110)
T d1f97a2 91 GTAMRSEAAHMDAV 104 (110)
T ss_dssp SCCEECCCEEEEEE
T ss_pred CcEEEEEEEEEEEE
Confidence 8764 345666665
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=4.7e-14 Score=81.39 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=58.1
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc-cce
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR-VPC 187 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~ 187 (207)
..+.+|+.+.|.|.+.+ +++ .+.|++++..+.... ...+.. ....|.|.+++.+|.|.|+|.|.|..|... ..+
T Consensus 13 ~~v~~g~~v~l~C~~~~-~~~-~v~W~~~~~~l~~~~-~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~ 87 (96)
T d1l6za2 13 TTVKELDSVTLTCLSND-IGA-NIQWLFNSQSLQLTE-RMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI 87 (96)
T ss_dssp SEECTTSCEEEEECCCC-SSC-EEEEEETTEECCCCT-TEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred eEEeCCCeEEEEEccCC-CCC-CEEEEEeeeeccccc-ceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence 45678999999999865 444 999999988764322 222322 234699999999999999999999988653 345
Q ss_pred EEEEe
Q psy10918 188 VFHIV 192 (207)
Q Consensus 188 ~~~v~ 192 (207)
.|.|.
T Consensus 88 ~L~V~ 92 (96)
T d1l6za2 88 KLDII 92 (96)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 55553
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.51 E-value=1.9e-15 Score=85.95 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=65.3
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+++.+++.+.++.+|+++.|.|.+ +.|.+ .+.|++||.++.......+...+ .+|.|.+++..|+|.|.|.+.|..
T Consensus 2 i~i~~~l~d~~v~~G~~~~~~c~v-s~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~ 79 (89)
T d1tiua_ 2 IEVEKPLYGVEVFVGETAHFEIEL-SEPDV-HGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK 79 (89)
T ss_dssp CCCSBCCCCEEEETTSCCCEEEBC-SSSSC-CCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred EEEEcCCcCEEEeCCCcEEEEEEE-CCCCc-EEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE
Confidence 456678899999999999999997 45666 89999999999876544444433 369999999999999999987532
Q ss_pred CCCccceEEEEEE
Q psy10918 84 GDGESNAFFLNVM 96 (207)
Q Consensus 84 ~~~~~~~~~l~v~ 96 (207)
.+..|.|.
T Consensus 80 -----~sa~l~V~ 87 (89)
T d1tiua_ 80 -----SAANLKVK 87 (89)
T ss_dssp -----CCEEEEEE
T ss_pred -----EEEEEEEE
Confidence 24556665
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=5.3e-14 Score=82.16 Aligned_cols=84 Identities=15% Similarity=0.382 Sum_probs=62.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc----------cccCCeEecCCeEEEEecCCCCCeeeEEEE
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH----------NIAQGIIMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
.......+.+|+++.|.|.+.+.|.+ .+.|++++..... ....+....+++|.|.+++.+|+|.|.|.+
T Consensus 6 t~~~~v~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a 84 (102)
T d1f97a1 6 TAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMV 84 (102)
T ss_dssp CSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred ccCCcEEEeCCCEEEEEEEcCCCCCC-eEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEE
Confidence 34455678899999999999998887 9999996654321 111223345678999999999999999999
Q ss_pred eeeCCCCccceEEEEE
Q psy10918 80 FNIEGDGESNAFFLNV 95 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v 95 (207)
.|..|.... .+.++|
T Consensus 85 ~n~~g~~~~-~~~v~v 99 (102)
T d1f97a1 85 SEEGGQNYG-EVSIHL 99 (102)
T ss_dssp EETTSSSEE-EEEEEE
T ss_pred EECCCCEEE-EEEEEE
Confidence 998887633 444443
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.6e-14 Score=84.94 Aligned_cols=84 Identities=18% Similarity=0.320 Sum_probs=61.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeec--C----ceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRS--G----TLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~--~----~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..+.+|+.+.|.|.+.+.|.| .+.|++++......... ...... + ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 14 v~v~~g~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G 92 (105)
T d1nbqa1 14 VRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG 92 (105)
T ss_dssp CCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred EEEeCCCeEEEEEEeCCCCCC-eeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence 346789999999999999987 99999976654322111 111110 0 013589999999999999999999999
Q ss_pred CCccceEEEEee
Q psy10918 182 HQRVPCVFHIVS 193 (207)
Q Consensus 182 ~~~~~~~~~v~~ 193 (207)
.....+.+.|.+
T Consensus 93 ~~~~~~~v~v~V 104 (105)
T d1nbqa1 93 NSYGEVKVKLIV 104 (105)
T ss_dssp SCEECCEEECCE
T ss_pred CEEEEEEEEEEE
Confidence 887776666553
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.50 E-value=2e-14 Score=85.11 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=59.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc----cccCCeE-----------ecCCeEEEEecCCCCCeeeE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH----NIAQGII-----------MTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~----~~~~~~~-----------~~~~~l~i~~~~~~d~g~Y~ 76 (207)
+.+.++.+|+++.|.|.+.+.|.+ .+.|++++..... ....... .....|.|.+++..|+|.|+
T Consensus 12 P~~~tv~~G~~v~l~C~v~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 90 (109)
T d2fdbp2 12 PANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 90 (109)
T ss_dssp SCCEEECTTCCEEEEEEEECSSCC-EEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEE
T ss_pred CCCEEEecCCcEEEEEEEEEcCCC-eEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEE
Confidence 466788999999999999999988 9999997644321 0000000 11246999999999999999
Q ss_pred EEEeeeCCCCccceEEEEE
Q psy10918 77 CVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 77 C~~~~~~~~~~~~~~~l~v 95 (207)
|.+.|..|.. ...+.|.|
T Consensus 91 C~a~N~~G~~-~~~~~L~V 108 (109)
T d2fdbp2 91 CLAGNSIGIS-FHSAWLTV 108 (109)
T ss_dssp EEEECSSCEE-EEEEEEEE
T ss_pred EEEEECCCEE-EEEEEEEE
Confidence 9999998877 44666765
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.1e-15 Score=85.26 Aligned_cols=77 Identities=14% Similarity=0.284 Sum_probs=59.9
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe-EEEEEEecCCCCCccce
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG-TLICWGSNKIGHQRVPC 187 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~n~~g~~~~~~ 187 (207)
..+.+|+.+.|.|.+.|.|.| .+.|++++..+.... ..........|.|.++..+|.| .|+|.|.|..|....++
T Consensus 12 ~~v~~G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~ 87 (92)
T d2ifga1 12 ASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATV---MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 87 (92)
T ss_dssp SCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEE---CCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred EEEeCCCEEEEeeeccCCCCc-EEEEEECCceeeeee---eeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence 356789999999999999998 999999986643211 1222344567999999999999 69999999999886664
Q ss_pred EE
Q psy10918 188 VF 189 (207)
Q Consensus 188 ~~ 189 (207)
.+
T Consensus 88 ~l 89 (92)
T d2ifga1 88 QV 89 (92)
T ss_dssp CC
T ss_pred EE
Confidence 44
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.50 E-value=1.9e-14 Score=84.37 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=58.2
Q ss_pred CCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCe--EecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 13 NPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGI--IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
....+.+|+++.|.|.+ .+.|.+ .+.|++++..+......+. ...+++|.|.+++.+|+|.|+|.+.|..|..
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~ 87 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI 87 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCC-EEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred CCEEEeCCCeEEEEEEccCCCCCC-EEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence 45678999999999997 567777 9999999987754332222 2345689999999999999999999988765
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.7e-14 Score=83.11 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=58.5
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeE---EeecC--------ceEEEEEecCCCCCCe-EEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH---ILRSG--------TLSVVAYSPNSELDYG-TLICW 175 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~--------~~~~l~i~~~~~~~~g-~y~C~ 175 (207)
...+..|+.+.|.|.+.+.|.| .+.|+++|..+........ ..... ..+.|.|.+++.+|.| .|+|.
T Consensus 11 ~i~v~~G~~v~l~C~v~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~ 89 (107)
T d1iray3 11 TMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 89 (107)
T ss_dssp EEECCTTCCEEEEEEEEECTTC-EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred EEEEeCCCEEEEEEEeccCCCC-eEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence 3456689999999999999998 9999998876542221111 11110 1357999999999999 59999
Q ss_pred EecCCCCCccceE
Q psy10918 176 GSNKIGHQRVPCV 188 (207)
Q Consensus 176 ~~n~~g~~~~~~~ 188 (207)
|.|..|..+..+.
T Consensus 90 A~N~~G~~~~~i~ 102 (107)
T d1iray3 90 AKNTHGIDAAYIQ 102 (107)
T ss_dssp EECSSCEEEEEEE
T ss_pred EEeCCCeEEEEEE
Confidence 9999998755433
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.8e-14 Score=80.23 Aligned_cols=86 Identities=8% Similarity=0.025 Sum_probs=57.8
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+....+..|+.+.|.|.+.|.|.|....|..+......... ...+........|.|.++..+|+|.|+|.|.|..|...
T Consensus 8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 87 (96)
T d2c9aa1 8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI 87 (96)
T ss_dssp CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEE
T ss_pred cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEE
Confidence 44567889999999999999987633334433322222221 22233333455799999999999999999999999753
Q ss_pred -cceEEEE
Q psy10918 185 -VPCVFHI 191 (207)
Q Consensus 185 -~~~~~~v 191 (207)
..+.|.|
T Consensus 88 s~~a~L~V 95 (96)
T d2c9aa1 88 SNYAELVV 95 (96)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 3355544
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.5e-14 Score=84.19 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=60.9
Q ss_pred CcccCCCcEE---EEeEeccCCCCcEEEEEECCccccccccCCeEec---------CCeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVY---FDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---------NQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~---l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---------~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+..|.... +.|.+.|.|.+ .+.|++++.++........... ...|.|.+++..|.|.|.|.+.|.
T Consensus 7 ~~~~~g~~~~~~ci~~~v~G~P~P-~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~ 85 (107)
T d1he7a_ 7 VQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85 (107)
T ss_dssp CCCCCCCCCCEEEEEEEECCSSCC-EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred eEECCCeEEEEEEEEEEEEEecCC-eEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence 3444455544 55588999988 9999999999875432222211 134999999999999999999999
Q ss_pred CCCCccceEEEEEEeCC
Q psy10918 83 EGDGESNAFFLNVMYSP 99 (207)
Q Consensus 83 ~~~~~~~~~~l~v~~~~ 99 (207)
.|.. ...+.|.|..+|
T Consensus 86 ~G~~-~~~i~v~v~~~P 101 (107)
T d1he7a_ 86 FGQA-SASIMAAFMDNP 101 (107)
T ss_dssp TEEE-EEEEEECCCSCT
T ss_pred CCEE-EEEEEEEEEcCC
Confidence 9876 556777777666
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.49 E-value=2.1e-14 Score=84.23 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=58.2
Q ss_pred CceeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+............ ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 11 ~~~v~v~eG~~~~l~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~ 88 (105)
T d1cs6a2 11 RDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVSQ-TTGNLYIAKTEASDLGNYSCFATSHIDFIT 88 (105)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCC-EEEEEESSTTCBCCCCSSEEECT-TTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred CCCEEEeCCCeEEEEEEccCCCCCC-EEEEEEeeccccccccceeeeec-CCCEEeecccccccCcEEEEEEEECCCCEE
Confidence 344567899999999997 566776 99999998765443322222222 223499999999999999999999988764
Q ss_pred cc
Q psy10918 185 VP 186 (207)
Q Consensus 185 ~~ 186 (207)
.+
T Consensus 89 ~~ 90 (105)
T d1cs6a2 89 KS 90 (105)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.4e-14 Score=81.15 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=59.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc----cccCCeE--ec--CCeEEEEecC-CCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH----NIAQGII--MT--NQSLVLQRVN-RQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~----~~~~~~~--~~--~~~l~i~~~~-~~d~g~Y~C~~~~~ 82 (207)
+....+.+|+.+.|.|.+.+.|.+..+.|++++..... ....++. .. ...|.|.+++ ..|+|.|.|.+.|.
T Consensus 9 ~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~ 88 (101)
T d3b5ha1 9 KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 88 (101)
T ss_dssp CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred CCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEEC
Confidence 45566889999999999999887657999997644321 1111121 11 2369999998 57999999999999
Q ss_pred CCCCccceEEEEE
Q psy10918 83 EGDGESNAFFLNV 95 (207)
Q Consensus 83 ~~~~~~~~~~l~v 95 (207)
.|.. ...+.|.|
T Consensus 89 ~G~~-~~~~~L~V 100 (101)
T d3b5ha1 89 KGSD-QAIITLRV 100 (101)
T ss_dssp TEEE-EEEEEEEE
T ss_pred CCEE-EEEEEEEE
Confidence 8876 44566665
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.3e-13 Score=78.67 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=54.4
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+....+.+|+.+.|.|.+.+.+++.+|.|+|++..+... .......+. .|.|.+++.+|+|.|+|.|.|..+
T Consensus 13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~--~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~ 84 (93)
T d1n26a1 13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--PSRWAGMGR--RLLLRSVQLHDSGNYSCYRAGRPA 84 (93)
T ss_dssp TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC--CEEEEEESS--EEEECSCCGGGCEEEEEESSSSCS
T ss_pred CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce--eeEEecCCC--EEEECCCChhcCEEEEEEECCccc
Confidence 344566789999999999987765599999998776432 222222232 599999999999999999987553
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.4e-14 Score=80.21 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=57.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+.+|+.+.|.|.+.+ +++ .+.|+++|..+...........++ .|.|.++..+|+|.|+|.|.|..|.......
T Consensus 7 ~~~~~G~~~~l~C~~~g-~~~-~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~ 81 (92)
T d1olza1 7 HFFKHGGTAELKCSQKS-NLA-RVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQV 81 (92)
T ss_dssp EEEETTSCEEECCCCSC-TTC-EEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred eeEeCCCEEEEEEEeec-cCC-ceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence 45679999999999988 555 999999988765443333333333 3999999999999999999999887644433
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.6e-15 Score=85.94 Aligned_cols=82 Identities=16% Similarity=0.329 Sum_probs=59.0
Q ss_pred eeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeecccee------EEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 110 GVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQA------HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+..|+.+.|.|.+. +.|.+ .+.|++++..+....... ..........|.|.++..+|+|.|+|.|.|..|.
T Consensus 13 ~v~~G~~v~l~C~~~~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 91 (104)
T d1nbqa2 13 SATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 91 (104)
T ss_dssp EEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred EEecCCcEEEEEEeecCCCCC-EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence 467899999999985 67776 999999987754322111 0111122346889999999999999999999998
Q ss_pred CccceEEEEe
Q psy10918 183 QRVPCVFHIV 192 (207)
Q Consensus 183 ~~~~~~~~v~ 192 (207)
...++.+.|.
T Consensus 92 ~~~s~~v~v~ 101 (104)
T d1nbqa2 92 PMTSNAVRME 101 (104)
T ss_dssp CEECCCBCCE
T ss_pred eEEEEEEEEE
Confidence 8666544443
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.5e-13 Score=77.22 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=61.5
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+....+..|+.+.|.|.+. .|.+ .+.|++++..+.... ....+..++..+.|.|.++..+|+|.|+|.|.|..
T Consensus 7 l~~~~v~~G~~v~l~C~v~-~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~---- 80 (90)
T d1x44a1 7 LEDTTAYCGERVELECEVS-EDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ---- 80 (90)
T ss_dssp CCCEEEETTEEEEEEEECS-SSSC-CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEE----
T ss_pred CCCEEEeCCCcEEEEEEEC-CCCc-eEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecce----
Confidence 3445678999999999984 5665 899999988765433 23456667778889999999999999999998743
Q ss_pred cceEEEEe
Q psy10918 185 VPCVFHIV 192 (207)
Q Consensus 185 ~~~~~~v~ 192 (207)
.++.+.|.
T Consensus 81 ~~a~l~V~ 88 (90)
T d1x44a1 81 SSAKLSVD 88 (90)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 24455443
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.47 E-value=2.1e-14 Score=83.08 Aligned_cols=73 Identities=26% Similarity=0.501 Sum_probs=55.1
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCVF 189 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~~ 189 (207)
++.+.|.|.+.|.|.| .+.|++++..+............+ ..|.+..+..+|+|.|+|.|.|..|.. ++.+.|
T Consensus 22 ~~~v~l~C~~~g~P~p-~v~W~~ng~~i~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L 95 (97)
T d1cs6a1 22 EEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARGTVVSREASL 95 (97)
T ss_dssp CCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred CCeEEEEEEEEEeCCC-EEEEEEeeeeccCCCCceEEeeee--eEEEEecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence 4789999999999987 999999998765443333333332 357788888899999999999999965 345444
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-14 Score=83.71 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccccccCCe---------EecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 14 PDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHHNIAQGI---------IMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+..+.+|++++|.|.+. +.|.+ .+.|++++..+........ ......|.|.+++.+|.|.|+|.+.|..
T Consensus 11 ~~~v~~G~~v~l~C~~~~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~ 89 (104)
T d1nbqa2 11 PSSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY 89 (104)
T ss_dssp BSEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred CCEEecCCcEEEEEEeecCCCCC-EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence 45678899999999984 67777 9999999988765332211 1223569999999999999999999999
Q ss_pred CCCc
Q psy10918 84 GDGE 87 (207)
Q Consensus 84 ~~~~ 87 (207)
|...
T Consensus 90 G~~~ 93 (104)
T d1nbqa2 90 GTPM 93 (104)
T ss_dssp SCCE
T ss_pred CceE
Confidence 8763
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.6e-14 Score=81.28 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=64.1
Q ss_pred CCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccc--cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHH--NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
......+|+.+.|.|.+. +.+.+ .+.|++++..+.. .....+...+++|.|.+++..|+|.|+|.+.|..|.. ..
T Consensus 10 ~~~~~~~~e~~~l~C~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~ 87 (101)
T d1iray1 10 IILVSSANEIDVRPCPLNPNEHKG-TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RI 87 (101)
T ss_dssp CCEEEETTSCEEECCCCCGGGCSS-EEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEE-EE
T ss_pred cEEEEeCCCeEEEEeeCCCCCCCc-eEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeE-EE
Confidence 344566799999999885 45655 9999999876543 2333455667899999999999999999999988766 44
Q ss_pred eEEEEEEe
Q psy10918 90 AFFLNVMY 97 (207)
Q Consensus 90 ~~~l~v~~ 97 (207)
.+.|.|..
T Consensus 88 ~~~L~V~~ 95 (101)
T d1iray1 88 KISAKFVE 95 (101)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 67788874
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.6e-14 Score=82.05 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=62.3
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe-------cCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-------TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
..+....|.|.+.|.|.+ .+.|++++..+.......... ....|.|.+++..|.|.|+|.+.|..|.. +..
T Consensus 14 ~~~~~~~i~~~v~G~P~P-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~ 91 (103)
T d1wwbx_ 14 TSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQ 91 (103)
T ss_dssp CCCCEEEEEEEEECSSCC-EEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEE
T ss_pred ccceeEEEEEEEEEeCCC-EEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEE
Confidence 356678899999999988 999999999987543222211 12359999999999999999999998877 556
Q ss_pred EEEEEEeCCc
Q psy10918 91 FFLNVMYSPT 100 (207)
Q Consensus 91 ~~l~v~~~~~ 100 (207)
+.|.|...|.
T Consensus 92 ~~v~V~~~P~ 101 (103)
T d1wwbx_ 92 ISAHFMGWPG 101 (103)
T ss_dssp EEECCSCCCC
T ss_pred EEEEEEeCCC
Confidence 7777665553
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=1.4e-13 Score=80.28 Aligned_cols=85 Identities=19% Similarity=0.356 Sum_probs=60.6
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeec--C----ceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRS--G----TLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~--~----~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
...+.+|+.+.|.|.+.+.|.| .+.|++++........ ....... . ..+.|.|.++..+|.|.|.|.|.|..
T Consensus 10 ~v~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~ 88 (102)
T d1f97a1 10 DVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEG 88 (102)
T ss_dssp EEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETT
T ss_pred cEEEeCCCEEEEEEEcCCCCCC-eEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECC
Confidence 3457899999999999998887 9999986554322110 0011000 0 12359999999999999999999999
Q ss_pred CCCccceEEEEee
Q psy10918 181 GHQRVPCVFHIVS 193 (207)
Q Consensus 181 g~~~~~~~~~v~~ 193 (207)
|.......+.|.+
T Consensus 89 g~~~~~~~v~v~V 101 (102)
T d1f97a1 89 GQNYGEVSIHLTV 101 (102)
T ss_dssp SSSEEEEEEEEEE
T ss_pred CCEEEEEEEEEEE
Confidence 9887776666654
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.4e-13 Score=78.04 Aligned_cols=78 Identities=6% Similarity=0.057 Sum_probs=58.5
Q ss_pred eeeeCCcEEEEEEeccC-CCC-ceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 110 GVARQEKVNISCEVDAN-PPD-VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
.+..|+.++|.|.+.|. |.+ ..+.|++++..+... ........+.|.|.....+|+|.|+|.|.|..|......
T Consensus 15 ~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~----~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~ 90 (103)
T d1iama1 15 WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE----PAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 90 (103)
T ss_dssp EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEE----ECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred eEeCCCEEEEEEEecCCCCCCceEEEEcccccccccc----ccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeE
Confidence 46789999999999975 433 368899998775432 122233456799999999999999999999999876665
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.+
T Consensus 91 ~~~~ 94 (103)
T d1iama1 91 FENT 94 (103)
T ss_dssp EEEE
T ss_pred eeeE
Confidence 5544
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.45 E-value=1.2e-13 Score=77.61 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=56.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.++|.|.+.+.+.+..+.|+++|..+. .....|.|.+++.+|+|.|+|.|.|..++. .
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~-----------~~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~--~ 78 (85)
T d2fcba1 12 QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP-----------THTQPSYRFKANNNDSGEYTCQTGQTSLSD--P 78 (85)
T ss_dssp CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT-----------TCCSSEEEEECCGGGCEEEEEECTTSBCCC--C
T ss_pred CCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc-----------ccccceEEeeccccCCcEEEEECCCCcccc--c
Confidence 334578999999999999988776899999887642 112348888999999999999999876544 5
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 79 v~l~V~ 84 (85)
T d2fcba1 79 VHLTVL 84 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555553
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.44 E-value=1.7e-13 Score=76.86 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=53.9
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.++|.|.+.+.+.+..+.|++++..+. .....|.|.+++.+|+|.|+|.|.|...+.
T Consensus 12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~-- 78 (84)
T d1fnla1 12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-----------SQASSYFIDAATVNDSGEYRCQTNLSTLSD-- 78 (84)
T ss_dssp SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-----------SSCSEEEESSCCGGGCEEEEEECSSSCCCC--
T ss_pred CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee-----------ecceeeEecCCcccCCEEEEEEccCCCccc--
Confidence 3344578999999999999988875677788776532 122358999999999999999998865543
Q ss_pred ceEEE
Q psy10918 186 PCVFH 190 (207)
Q Consensus 186 ~~~~~ 190 (207)
.+.|.
T Consensus 79 ~v~L~ 83 (84)
T d1fnla1 79 PVQLE 83 (84)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 44443
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-13 Score=79.52 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=57.4
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEE-EEE--CCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVE-WRH--NNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~-W~~--~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+..+.+|+++.|.|.+.+.|.+ .+. |.. ++............. ...+|.|.+++.+|+|.|+|.+.|..|..
T Consensus 8 ~~~~~v~~G~~v~l~C~~~g~p~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 86 (96)
T d2c9aa1 8 IQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86 (96)
T ss_dssp CCCEEECSSSCEEEEEEEESCCCS-SCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEE
T ss_pred cCCEEEeCCCEEEEEEEEeecCCC-cEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeE
Confidence 678889999999999999998866 333 322 222222211111111 12469999999999999999999998876
Q ss_pred ccceEEEEE
Q psy10918 87 ESNAFFLNV 95 (207)
Q Consensus 87 ~~~~~~l~v 95 (207)
.+....|.|
T Consensus 87 ~s~~a~L~V 95 (96)
T d2c9aa1 87 ISNYAELVV 95 (96)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 565556665
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-13 Score=81.01 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=58.7
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--c----CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--T----NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+....|.|.+.|.|.+ .+.|++++..+.......... . ...|.|.+++..|+|.|+|.+.|..|.. +..+.|
T Consensus 17 ~~~~~i~~~v~G~P~P-~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v 94 (105)
T d1wwca_ 17 RLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTING 94 (105)
T ss_dssp CCEEEEEEEEECSSCC-EEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred EEEEEEEEEEEEeCCC-eEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEEE
Confidence 4446688899999988 999999999887643322211 1 2359999999999999999999998866 556677
Q ss_pred EEEeCC
Q psy10918 94 NVMYSP 99 (207)
Q Consensus 94 ~v~~~~ 99 (207)
.|..+|
T Consensus 95 ~V~~~P 100 (105)
T d1wwca_ 95 HFLKEP 100 (105)
T ss_dssp CCSCCC
T ss_pred EEEeCC
Confidence 766554
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.7e-13 Score=78.71 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=57.0
Q ss_pred CcccCCCcEEEEe------EeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 15 DHIKEDSDVYFDC------DIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 15 ~~v~~g~~v~l~C------~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+..|....|.| .+.+.+.| .+.|++|+.++... .......++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P-~i~W~kdg~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG 83 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCC-CCEEEETTEECCCC-SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred EEEecCCCEEEEcCCccccccCCCCCC-EEEEEECCccccCC-CcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence 3467799999999 55677777 99999999998763 3445566788999999999999999999987764
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3e-13 Score=77.54 Aligned_cols=66 Identities=11% Similarity=0.258 Sum_probs=51.7
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecC--CeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTN--QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+|+++.|.|.+.+ |.+ .+.|++++..+....... +...+ ..|.|.+++..|+|.|+|.+.|.
T Consensus 16 ~~v~~G~~v~l~c~v~~-p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 84 (94)
T d1pd6a_ 16 YQVSKGHKIRLTVELAD-HDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 84 (94)
T ss_dssp EEEETTSCEEEEEECSS-SSS-CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred EEECcCCeEEEEEEECC-CCc-eEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence 46789999999999854 666 899999999987643332 23333 35999999999999999999764
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.8e-13 Score=78.29 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=60.5
Q ss_pred cCCCcccCCCcEEEEeEeccC-CCC-cEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV-PPV-YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~-~~~-~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
+.+..+.+|+.++|.|.+.+. |.+ ..+.|++++..+....... ......|.|.....+|.|.|+|.|.|..|.. ..
T Consensus 11 p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~-~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~-~~ 88 (103)
T d1iama1 11 PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ-GL 88 (103)
T ss_dssp CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEEECGGG-TS
T ss_pred CCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc-ccceEEEEEeeehhHCCCEEEEEEEeCCCCc-cC
Confidence 455678899999999999874 433 2688999998886532211 1123469999999999999999999998865 33
Q ss_pred eEEEEEE
Q psy10918 90 AFFLNVM 96 (207)
Q Consensus 90 ~~~l~v~ 96 (207)
.+.+.+.
T Consensus 89 ~~~~~~s 95 (103)
T d1iama1 89 ELFENTS 95 (103)
T ss_dssp CEEEEEC
T ss_pred eEeeeEc
Confidence 5555654
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.7e-13 Score=79.57 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=61.0
Q ss_pred eeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 110 GVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
....|+.+.|.|.+.. .+.+ .+.|++++..+.... ...++...+. .|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 13 ~~~~~e~~~l~C~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 89 (101)
T d1iray1 13 VSSANEIDVRPCPLNPNEHKG-TITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 89 (101)
T ss_dssp EEETTSCEEECCCCCGGGCSS-EEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEeCCCeEEEEeeCCCCCCCc-eEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEEE
Confidence 4567999999998864 4555 999999886543322 1122222332 599999999999999999999999887787
Q ss_pred EEEEeec
Q psy10918 188 VFHIVSA 194 (207)
Q Consensus 188 ~~~v~~~ 194 (207)
.|.|+..
T Consensus 90 ~L~V~~~ 96 (101)
T d1iray1 90 SAKFVEN 96 (101)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7777654
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3e-13 Score=75.39 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=52.5
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.+.|.|.+.+.|.+..+.|++++..+. .....|.|.+++.+|+|.|.|.|.|..++.
T Consensus 8 P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~-- 74 (82)
T d1f2qa1 8 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-----------ETNSSLNIVNAKFEDSGEYKCQHQQVNESE-- 74 (82)
T ss_dssp SSCSEEETTCCEEEECCTTCC----CCEEEETTEECS-----------CCSSEEEECSCCGGGCEEEEEECTTSSCCC--
T ss_pred CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee-----------cccceeEECCCChhhCCcEEEEecCCCCcc--
Confidence 3334578999999999999998875677788776532 122358999999999999999999865544
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
.+.|.|.
T Consensus 75 ~v~l~V~ 81 (82)
T d1f2qa1 75 PVYLEVF 81 (82)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 5555553
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5e-13 Score=78.59 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--------------ecCCeEEEEecCCCCCe-eeEEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--------------MTNQSLVLQRVNRQSAG-NYTCV 78 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--------------~~~~~l~i~~~~~~d~g-~Y~C~ 78 (207)
...+..|+++.|.|.+.+.|.+ .+.|++++..+......... .....|.|.+++.+|.| .|.|.
T Consensus 11 ~i~v~~G~~v~l~C~v~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~ 89 (107)
T d1iray3 11 TMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 89 (107)
T ss_dssp EEECCTTCCEEEEEEEEECTTC-EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred EEEEeCCCEEEEEEEeccCCCC-eEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence 3457789999999999999988 99999999887643221110 01135999999999999 59999
Q ss_pred EeeeCCCCccceEEE
Q psy10918 79 GFNIEGDGESNAFFL 93 (207)
Q Consensus 79 ~~~~~~~~~~~~~~l 93 (207)
|.|..|.. ...+.|
T Consensus 90 A~N~~G~~-~~~i~L 103 (107)
T d1iray3 90 AKNTHGID-AAYIQL 103 (107)
T ss_dssp EECSSCEE-EEEEEE
T ss_pred EEeCCCeE-EEEEEE
Confidence 99999866 334433
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.36 E-value=2.3e-13 Score=77.13 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=61.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+ +.|.+ .+.|+++|..+.. .....+...+..+.|.|.++..+|+|.|+|.|.|..+ +
T Consensus 9 ~d~~v~~G~~~~~~c~v-s~p~~-~v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----s 81 (89)
T d1tiua_ 9 YGVEVFVGETAHFEIEL-SEPDV-HGQWKLKGQPLTA-SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----A 81 (89)
T ss_dssp CCEEEETTSCCCEEEBC-SSSSC-CCBCCSSSCCCCS-SSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----C
T ss_pred cCEEEeCCCcEEEEEEE-CCCCc-EEEEEEeeeeccc-ceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----E
Confidence 44567899999999997 46766 9999999987643 3445666777788899999999999999999977433 4
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 82 a~l~V~ 87 (89)
T d1tiua_ 82 ANLKVK 87 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555543
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.36 E-value=5.6e-13 Score=78.61 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccC------CeEecCCeEEEEecCCCCCe---eeEEEEeeeC
Q psy10918 14 PDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQ------GIIMTNQSLVLQRVNRQSAG---NYTCVGFNIE 83 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g---~Y~C~~~~~~ 83 (207)
..++.+|+++.|.|.+ .+.|.+ .+.|++++..+...... .....+++|.|.+++..|+| .|.|.+.|..
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~ 89 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA 89 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred cccccCCCeEEEEEEcccCCCCC-EEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence 3456899999999997 788988 99999988766432211 12234678999999998877 6999999998
Q ss_pred CCC
Q psy10918 84 GDG 86 (207)
Q Consensus 84 ~~~ 86 (207)
|..
T Consensus 90 g~~ 92 (111)
T d1biha2 90 VDE 92 (111)
T ss_dssp CSS
T ss_pred CCc
Confidence 866
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.3e-12 Score=75.86 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=53.0
Q ss_pred eeeeCCcEEEEE------EeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISC------EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 110 ~~~~g~~~~l~C------~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+..|....|.| .+.++|.| .+.|++++..+..... ......+ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P-~i~W~kdg~~l~~~~~-~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~ 84 (103)
T d1iray2 10 KLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKPLLLDNI-HFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGK 84 (103)
T ss_dssp EEESSSCEEEECTTGGGGCBTTTBCC-CCEEEETTEECCCCSS-SEEEETT---EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred EEecCCCEEEEcCCccccccCCCCCC-EEEEEECCccccCCCc-EEEecCC---EEEEcccccccCcEEEEEEEECcCCE
Confidence 456889999999 56777887 9999999987653322 2222222 49999999999999999999988754
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.3e-12 Score=76.50 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=55.1
Q ss_pred eeeeeCCcEEEEEEeccC-C-CCceEEEEEcCceeeeccceeE-EeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 109 LGVARQEKVNISCEVDAN-P-PDVKFSWTFNNSAETVNVAQAH-ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~-~-~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
..+..|+.++|.|.+.|. | +.+.+.|++++..+........ .......+.|.+.....+|.|.|+|.|.|..+....
T Consensus 12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~ 91 (106)
T d1zxqa1 12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG 91 (106)
T ss_dssp SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence 346789999999999874 3 3348999999887543221111 111122456778777888889999999999876644
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
....
T Consensus 92 ~~~~ 95 (106)
T d1zxqa1 92 NIFH 95 (106)
T ss_dssp CEEE
T ss_pred eeEe
Confidence 4333
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.4e-12 Score=75.27 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=55.7
Q ss_pred CCCcccCCCcEEEEeEeccC-C-CCcEEEEEECCccccccccCCeEec----CCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-P-PVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~-~~~~i~W~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.+..+.+|+.++|.|.+.+. + +...+.|++++..+........... ...|.|.....+|.|.|+|.|.|..+..
T Consensus 10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~ 89 (106)
T d1zxqa1 10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR 89 (106)
T ss_dssp ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence 34567899999999999873 3 2237999999998865322211111 1247777777788889999999987754
Q ss_pred ccceEEEEEE
Q psy10918 87 ESNAFFLNVM 96 (207)
Q Consensus 87 ~~~~~~l~v~ 96 (207)
...+.+.+.
T Consensus 90 -~~~~~~~~s 98 (106)
T d1zxqa1 90 -GGNIFHKHS 98 (106)
T ss_dssp -TCCEEEEEC
T ss_pred -CCeeEeccc
Confidence 334444443
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-13 Score=82.69 Aligned_cols=84 Identities=18% Similarity=0.364 Sum_probs=62.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe----c-C---CeEEEEecCCCC-CeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM----T-N---QSLVLQRVNRQS-AGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~----~-~---~~l~i~~~~~~d-~g~Y~C~~~~~ 82 (207)
+....+.+|+++.|.|.+.+.+++..+.|++++..+.......+.. . . ..|.|.+++..| +|.|.|.+.|.
T Consensus 13 ~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~ 92 (115)
T d2crya1 13 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNS 92 (115)
T ss_dssp ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEEC
Confidence 3556788999999999998865544899999998886543332221 1 1 258999999998 69999999999
Q ss_pred CCCCccceEEEEEE
Q psy10918 83 EGDGESNAFFLNVM 96 (207)
Q Consensus 83 ~~~~~~~~~~l~v~ 96 (207)
.|.. +..+.|.|.
T Consensus 93 ~G~~-~~~~~L~V~ 105 (115)
T d2crya1 93 FGSD-TEIIRLKEQ 105 (115)
T ss_dssp SCEE-EEEECCCCS
T ss_pred CCeE-EEEEEEEEE
Confidence 9976 556666655
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.23 E-value=7.3e-12 Score=73.73 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=52.9
Q ss_pred eeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccc------eeEEeecCceEEEEEecCCCCCCe---EEEEEEecC
Q psy10918 110 GVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVA------QAHILRSGTLSVVAYSPNSELDYG---TLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~~~g---~y~C~~~n~ 179 (207)
.+.+|+.+.|.|.+ .|.|.| .+.|++++..+..... ......++ .|.|.+++..|+| .|.|.|.|.
T Consensus 13 t~~EG~~~~L~C~v~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~gd~g~Y~C~A~N~ 88 (111)
T d1biha2 13 TPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNA 88 (111)
T ss_dssp CCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEECT
T ss_pred cccCCCeEEEEEEcccCCCCC-EEEEEeCCccccccccceeeeeeecccccc---ccEEeeeEeeccCCceEEEEEEEeC
Confidence 35689999999987 788887 9999998765432211 11122222 4888888888776 799999999
Q ss_pred CCCCccce
Q psy10918 180 IGHQRVPC 187 (207)
Q Consensus 180 ~g~~~~~~ 187 (207)
.|......
T Consensus 89 ~g~~~~~~ 96 (111)
T d1biha2 89 AVDEEVVL 96 (111)
T ss_dssp TCSSCEEE
T ss_pred CCCceEEE
Confidence 99875543
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=1.7e-11 Score=70.42 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=56.5
Q ss_pred ccCCCcEEEEeEe-ccCCCCcEEEEEECCccccc---------cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 17 IKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHH---------NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 17 v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...|++|+|.|.. ........|.|++++..+.. .........+++|+|.+++.+|+|.|+|.+.+..|..
T Consensus 7 G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~ 86 (98)
T d1hnga1 7 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR 86 (98)
T ss_dssp EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred EecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCE
Confidence 3569999999964 33333347999998866632 1112233456789999999999999999999887764
Q ss_pred c-cceEEEEEE
Q psy10918 87 E-SNAFFLNVM 96 (207)
Q Consensus 87 ~-~~~~~l~v~ 96 (207)
. ...+.|.|+
T Consensus 87 ~~~~~~~L~V~ 97 (98)
T d1hnga1 87 ILNKALDLRIL 97 (98)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 3 456667765
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=3.9e-11 Score=70.04 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=52.8
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccc------------------cccCCeEecCCeEEEEecCCCCCeeeE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH------------------NIAQGIIMTNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 76 (207)
..+.+|++|.|.|........ .+.|+|....... -..+.....+++|.|.+++.+|+|.|.
T Consensus 9 ~~v~~G~~V~L~c~~~p~~~~-~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~ 87 (107)
T d1l6za1 9 PQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87 (107)
T ss_dssp SSCCTTCCEEEEEESCCTTCS-EEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred CcccCCCCEEEEecCCCCCce-EEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEE
Confidence 346799999999985433333 8999985432111 001222345678999999999999999
Q ss_pred EEEeeeCCCCccceEEEEE
Q psy10918 77 CVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 77 C~~~~~~~~~~~~~~~l~v 95 (207)
|.+.+..+......+.|.|
T Consensus 88 c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 88 LDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEETTEEECCCCEEECC
T ss_pred EEEEECCCCEEEEEEEEEE
Confidence 9997654433344455554
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.2e-11 Score=69.48 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=52.1
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccc----------cCCeE--ecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI----------AQGII--MTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~----------~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
....|++|+|.|... .|.+ .+.|++++..+.... ..+.. ..+.+|+|.+++.+|+|.|.|.+.+..
T Consensus 6 ~~~~G~sVtl~c~~~-~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~ 83 (93)
T d1ccza1 6 YGVVYGNVTFHVPSN-VPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83 (93)
T ss_dssp EEETTCCEEECCCCS-SCCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred EEEECCCEEEEecCC-CCCc-EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence 356799999999864 4555 899999886653210 11111 224579999999999999999987654
Q ss_pred CCCccceEEEEE
Q psy10918 84 GDGESNAFFLNV 95 (207)
Q Consensus 84 ~~~~~~~~~l~v 95 (207)
+ +..+.|.|
T Consensus 84 ~---t~~~~l~V 92 (93)
T d1ccza1 84 D---TMKFFLYV 92 (93)
T ss_dssp S---CEEEEEEE
T ss_pred c---EEEEEEEE
Confidence 4 33455655
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.1e-10 Score=66.51 Aligned_cols=78 Identities=6% Similarity=-0.034 Sum_probs=52.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce---------eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ---------AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
....|++++|.|... .|.+ .+.|++++..+...... .+...+.....|.|.+++.+|+|.|.|.|.|..
T Consensus 6 ~~~~G~sVtl~c~~~-~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~ 83 (93)
T d1ccza1 6 YGVVYGNVTFHVPSN-VPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83 (93)
T ss_dssp EEETTCCEEECCCCS-SCCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred EEEECCCEEEEecCC-CCCc-EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence 456899999999764 4665 99999987654321111 111112233459999999999999999999876
Q ss_pred CCCccceEEEE
Q psy10918 181 GHQRVPCVFHI 191 (207)
Q Consensus 181 g~~~~~~~~~v 191 (207)
+.. .+.+.|
T Consensus 84 ~t~--~~~l~V 92 (93)
T d1ccza1 84 DTM--KFFLYV 92 (93)
T ss_dssp SCE--EEEEEE
T ss_pred cEE--EEEEEE
Confidence 543 344443
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=4.5e-10 Score=67.63 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=56.9
Q ss_pred eecCCCcccCCCcEEEEeEecc--CCCCcEEEEEECCcccc-----------c----cccCCeEe-------cCCeEEEE
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNNKTLH-----------H----NIAQGIIM-------TNQSLVLQ 65 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~~~~~-----------~----~~~~~~~~-------~~~~l~i~ 65 (207)
.+.....+..|++++|.|.... ......+.|++.+.... . ....+... .+.+|.|.
T Consensus 7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 86 (126)
T d1pkoa_ 7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQ 86 (126)
T ss_dssp CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEES
T ss_pred CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEE
Confidence 3445567789999999998743 22233799998653210 0 00011111 12469999
Q ss_pred ecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCC
Q psy10918 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~ 99 (207)
+++..|+|.|.|.+.+..+.. ...+.|.|..+.
T Consensus 87 ~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~ 119 (126)
T d1pkoa_ 87 NVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPF 119 (126)
T ss_dssp SCCGGGCEEEEEEEEETTEEE-EEEEEEEEECTT
T ss_pred EEchhHCeEEEEEEEECCCEE-EEEEEEEEeCCC
Confidence 999999999999998765544 556778887543
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.9e-10 Score=66.14 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=56.7
Q ss_pred CCceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc---CCeEecCCeEEEEecCCCCCeeeEE
Q psy10918 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA---QGIIMTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 1 ~p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~C 77 (207)
+|+..|... + ...|..|++|+|.|.+... .. .+.|++++........ .........+.|.+++..|+|.|+|
T Consensus 5 lpkPsLsa~--P-~~~V~~G~~VTL~C~~~~~-~~-~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C 79 (99)
T d1ucta1 5 FPMPFISAK--S-SPVIPLDGSVKIQCQAIRE-AY-LTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQC 79 (99)
T ss_dssp SCCCCEEES--S-CSEEETTCCEEEEECCCTT-CS-EEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEE
T ss_pred CCCCEEEec--C-CCceeCCCeEEEEEcCCCC-Cc-EEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEE
Confidence 355555433 2 3457889999999986543 23 8999998753322110 0111123469999999999999999
Q ss_pred EEeeeCC-CCccceEEEEE
Q psy10918 78 VGFNIEG-DGESNAFFLNV 95 (207)
Q Consensus 78 ~~~~~~~-~~~~~~~~l~v 95 (207)
...++.. +..+..+.|.|
T Consensus 80 ~y~~~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 80 QYRIGHYRFRYSDTLELVV 98 (99)
T ss_dssp EEEETTTEEEECCCEEEEE
T ss_pred EEECCCcccCCCCCEEEEe
Confidence 9876543 23355555554
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=3.7e-10 Score=64.21 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=59.1
Q ss_pred CCceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEE
Q psy10918 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 1 ~p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
+|+.+|... + ...|..|++|+|.|...... . .+.|++++.......... .......|.|.+++..|+|.|+|..
T Consensus 2 lPKPsLsa~--P-~~~V~~G~~VTL~C~~~~~~-~-~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y 76 (95)
T d1olla1 2 LPKPFIWAE--P-HFMVPKEKQVTICCQGNYGA-V-EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76 (95)
T ss_dssp CCCCEEEEE--S-CSEEETTCCEEEEEECCTTC-C-EEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCEEEee--C-CCcccCCCcEEEEEecCCCc-c-EEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEe
Confidence 466666544 3 34578999999999975443 3 899999886433211110 0111236999999999999999998
Q ss_pred eeeCC-CCccceEEEEEE
Q psy10918 80 FNIEG-DGESNAFFLNVM 96 (207)
Q Consensus 80 ~~~~~-~~~~~~~~l~v~ 96 (207)
+++.. +..+..+.|.|.
T Consensus 77 ~~~~~~S~~Sd~leL~VT 94 (95)
T d1olla1 77 RVGELWSEPSNLLDLVVT 94 (95)
T ss_dssp EETTEECCCCCCEEEEEE
T ss_pred CCCCCccCCCCCEEEEEe
Confidence 76533 344556666653
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.00 E-value=8.3e-10 Score=64.18 Aligned_cols=75 Identities=9% Similarity=0.235 Sum_probs=50.8
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEec----CCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIMT----NQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~~----~~~l~i~~~~~ 69 (207)
+.+.+.+....+.+|++++|.|...+.... .+.||+.. .... .....++... ...|.|.+++.
T Consensus 2 ~~~tQsP~~ltv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~ 80 (107)
T d1ospl1 2 IQMSQSSSSFSVSLGDRVTITCKASEDIYS-RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQT 80 (107)
T ss_dssp CCEECCCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCG
T ss_pred CCEEeeCCEEEECCCCCEEEEEecCCCccc-ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccc
Confidence 345677778888999999999998765544 68999832 1110 0111122211 23599999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|.|.+..
T Consensus 81 ~Dsa~YyCa~~~ 92 (107)
T d1ospl1 81 EDVATYFCQQYW 92 (107)
T ss_dssp GGCSEEEEEECS
T ss_pred ccCCcEEEeecc
Confidence 999999998753
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.99 E-value=4.2e-10 Score=65.30 Aligned_cols=75 Identities=13% Similarity=0.285 Sum_probs=50.9
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc----------ccccCCeE--ec--CCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH----------HNIAQGII--MT--NQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~----------~~~~~~~~--~~--~~~l~i~~~~~ 69 (207)
+.+.+++....+.+|++++|.|........ .+.||+. |.... ......+. .. ...|.|.+++.
T Consensus 2 ~~ltQ~P~s~~~~~G~svtl~C~~s~~~~~-~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 80 (107)
T d1c5cl1 2 IQLTQSPSSLSASLGERVSLTCRTSQEISG-YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLES 80 (107)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CCEEccCCEEEECCCCCEEEEEEeCCCCCC-CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcc
Confidence 456677788888999999999998765554 6899983 22211 00011111 11 23699999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|.|.+.+
T Consensus 81 ~Dsa~YyCa~~~ 92 (107)
T d1c5cl1 81 EDFADYYCLQYA 92 (107)
T ss_dssp GGCSEEEEEECS
T ss_pred cCCeEEEEecCc
Confidence 999999998753
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.98 E-value=5e-10 Score=65.22 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=50.0
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe----cCCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM----TNQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~----~~~~l~i~~~~~ 69 (207)
+.+.+++....+.+|++++|.|........ .+.||+.. ..+. .....++.. ....|+|.+++.
T Consensus 2 i~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~ 80 (107)
T d1j1pl_ 2 IVLTQSPATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (107)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CCEECcCCeEEECCCCCEEEEEEecCCCCc-ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCc
Confidence 345677788889999999999997655444 79999832 1110 001111111 123599999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|+|...
T Consensus 81 ~Dsa~YyCa~~ 91 (107)
T d1j1pl_ 81 EDFGMYFCQQA 91 (107)
T ss_dssp GGCEEEEEEEC
T ss_pred CCCEEEEEEcC
Confidence 99999999765
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.98 E-value=6.3e-10 Score=64.82 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=50.3
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe----cCCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM----TNQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~----~~~~l~i~~~~~ 69 (207)
+.+.+.+....+.+|++|+|.|........ .+.||+.. .... .....++.. ....|+|.+++.
T Consensus 2 ~~~tQsP~~l~v~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 80 (107)
T d1kcvl1 2 IVMTQSPKSMGMSVGEAVTLNCKASENVGT-YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQA 80 (107)
T ss_dssp CCEEESCSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CCEECcCCEEeECCCCCEEEEEEecCCcCC-ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhhee
Confidence 345577777888999999999998765544 69999832 1111 000111111 123599999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|+|.+..
T Consensus 81 ~DSa~YyCa~~~ 92 (107)
T d1kcvl1 81 DDDADYYCGQSY 92 (107)
T ss_dssp GGCEEEEEEECS
T ss_pred cCCceEEEEecC
Confidence 999999998753
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.93 E-value=1.3e-09 Score=63.28 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=50.1
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCe--EecC--CeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGI--IMTN--QSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~--~~~~--~~l~i~~~~~ 69 (207)
+.+.+++....+.+|++++|.|........ .+.||+.. .... ......+ ..++ ..|+|.+++.
T Consensus 2 i~vtQ~P~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~ 80 (108)
T d1jhll_ 2 IELTQSPSYLVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEP 80 (108)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCT
T ss_pred CcEEccCCeEEecCCCCEEEEEEccCCcCC-ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEe
Confidence 345677888888999999999998765444 68999832 1110 0001111 1111 2599999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|.|...+
T Consensus 81 ~Dsa~YyCA~~~ 92 (108)
T d1jhll_ 81 EDFAMYICQQHN 92 (108)
T ss_dssp TCCSEEEEEECS
T ss_pred ccceEEEEeeCC
Confidence 999999997653
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.92 E-value=1.1e-09 Score=63.59 Aligned_cols=75 Identities=11% Similarity=0.223 Sum_probs=50.9
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe--cC--CeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM--TN--QSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~--~~--~~l~i~~~~~ 69 (207)
+.+.+++....+.+|++|+|.|........ .+.||+.. ..+. .....++.. .+ ..|+|.+++.
T Consensus 2 ~~~tQ~P~sl~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 80 (107)
T d1tjgl1 2 LQLTQSPSSLSASVGDRITITCRASQGVTS-ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP 80 (107)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred ccEEeeCCEEEECCCCCEEEEEEECCCCCc-cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEecccee
Confidence 456688888889999999999998755444 78899832 1110 001111111 11 2499999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|.|....
T Consensus 81 ~DsA~YyCa~~~ 92 (107)
T d1tjgl1 81 EDFATYYCQQLH 92 (107)
T ss_dssp GGCSEEEEEECS
T ss_pred CcCceEEEEECc
Confidence 999999997653
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=7e-10 Score=66.50 Aligned_cols=88 Identities=14% Similarity=0.262 Sum_probs=54.2
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC---CCcEEEEEECCccccc----------------cc---cCCeEe-------c
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTLHH----------------NI---AQGIIM-------T 58 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~~~~~----------------~~---~~~~~~-------~ 58 (207)
+..+.....+.+|++++|.|.....+ ....+.|++....... .. ..+... .
T Consensus 7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 86 (124)
T d1eaja_ 7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG 86 (124)
T ss_dssp ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC
Confidence 33333445678999999999975432 2236889873221100 00 001111 1
Q ss_pred CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
..+|+|.+++..|+|.|.|.+.+..+.. ...+.|.|.
T Consensus 87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~ 123 (124)
T d1eaja_ 87 DASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL 123 (124)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred EEEEEEcccEEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence 2369999999999999999998765533 445666664
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.92 E-value=2.1e-09 Score=62.32 Aligned_cols=74 Identities=12% Similarity=0.250 Sum_probs=50.0
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc----------ccccCCeEe--c--CCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH----------HNIAQGIIM--T--NQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~----------~~~~~~~~~--~--~~~l~i~~~~~ 69 (207)
+.+.+++....+.+|++++|.|........ .+.||+. +.... .....++.. . ..+|.|.+++.
T Consensus 2 i~ltQsP~slsv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~ 80 (106)
T d1i8ka_ 2 IELTQSPASLSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS 80 (106)
T ss_dssp CCEEEECSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CCEEeeCCEEEECCCCCEEEEEEeCCCCCc-cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcc
Confidence 345677778888999999999987655444 6899973 22111 011111111 1 23599999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|+|.+.
T Consensus 81 ~Dsa~YyCa~~ 91 (106)
T d1i8ka_ 81 EDVGDYYCLQS 91 (106)
T ss_dssp GGCEEEEEEEC
T ss_pred ccCEEEeEecC
Confidence 99999999865
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.92 E-value=9e-10 Score=64.01 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=49.5
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe----cCCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM----TNQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~----~~~~l~i~~~~~ 69 (207)
+.+.+++....+.+|++++|.|........ .+.||+.. .... .....++.. ....|.|.+++.
T Consensus 2 i~ltQ~p~~l~~~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~ 80 (107)
T d1mexl1 2 IVMTQSQKFMSTSLGNRVSVTCKASQNVGT-NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQS 80 (107)
T ss_dssp CCEECCCSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CcEEcCCCeEEECCCCCEEEEEEeCCCCCC-ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhe
Confidence 345677777788999999999997655444 78999832 1110 001111211 113499999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|.|.+.
T Consensus 81 ~DsA~YyCa~~ 91 (107)
T d1mexl1 81 EDLAEYFCQQY 91 (107)
T ss_dssp GGCSEEEEEEC
T ss_pred ecceeEEEeEC
Confidence 99999999865
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=4.1e-09 Score=60.24 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=52.6
Q ss_pred eeeCCcEEEEEEeccC-CCCceEEEEEcCceeeec-cc--------eeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 111 VARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVN-VA--------QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~-~~--------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
...|+++.|.|..... .....|.|++++..+... .. ......+ ..|.|.+++.+|+|.|+|.+.+..
T Consensus 7 G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n---gSL~I~nl~~~DsG~Y~c~v~~~~ 83 (98)
T d1hnga1 7 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYSTN 83 (98)
T ss_dssp EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEETT
T ss_pred EecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC---ccEEEeCCCHHHCEEEEEEEEeCC
Confidence 4579999999964322 222389999987654211 11 1111112 249999999999999999999988
Q ss_pred CCCccceEEEEee
Q psy10918 181 GHQRVPCVFHIVS 193 (207)
Q Consensus 181 g~~~~~~~~~v~~ 193 (207)
|.......+.+.+
T Consensus 84 g~~~~~~~~~L~V 96 (98)
T d1hnga1 84 GTRILNKALDLRI 96 (98)
T ss_dssp CCEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEE
Confidence 8764444555544
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.91 E-value=1.5e-09 Score=63.12 Aligned_cols=75 Identities=13% Similarity=0.271 Sum_probs=50.0
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe----cCCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM----TNQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~----~~~~l~i~~~~~ 69 (207)
+.+.+.+....+.+|++++|.|........ .+.||+.. .... .....++.. ....|.|.+++.
T Consensus 2 ~~~tQ~P~sl~~~~G~svtl~C~~s~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~ 80 (107)
T d1d5il1 2 IKMTQSPSSMYASLGERVTITCKASQDINS-YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEY 80 (107)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CCEEeeCCEEEECCCCCEEEEEEcCCCCCC-ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCC
Confidence 345677777888999999999987665544 68899832 1110 000111211 123599999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|+|....
T Consensus 81 ~Dsa~YyCa~~~ 92 (107)
T d1d5il1 81 EDMGIYYCLQYD 92 (107)
T ss_dssp GGCEEEEEEECS
T ss_pred cCCEEEEeeecc
Confidence 999999998653
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.91 E-value=1.6e-09 Score=62.81 Aligned_cols=72 Identities=10% Similarity=0.219 Sum_probs=48.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeE--ec--CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGII--MT--NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~--~~--~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|........ .+.||+.. .... .....++. .. ...|.|.+++.+|
T Consensus 3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 81 (106)
T d1op3k1 3 MTQSPSTLSASVGDTITITCRASQSIET-WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDD 81 (106)
T ss_dssp EEEECSEEEECTTCEEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeCCCCCC-cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccC
Confidence 4567788889999999999988665544 68999832 1110 00011111 11 1359999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
+|.|.|.+.
T Consensus 82 sa~YyCa~~ 90 (106)
T d1op3k1 82 FATYHCQHY 90 (106)
T ss_dssp CSEEEEEEE
T ss_pred CCcEeeeeC
Confidence 999999865
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=8e-09 Score=61.96 Aligned_cols=84 Identities=8% Similarity=0.219 Sum_probs=53.4
Q ss_pred eeeeeCCcEEEEEEeccC--CCCceEEEEEcCceeeec--c--------------ceeEEee---cCceEEEEEecCCCC
Q psy10918 109 LGVARQEKVNISCEVDAN--PPDVKFSWTFNNSAETVN--V--------------AQAHILR---SGTLSVVAYSPNSEL 167 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~--~--------------~~~~~~~---~~~~~~l~i~~~~~~ 167 (207)
..+..|+.++|.|..... .....+.|++.+...... . .+..... ..+...|.|.+++.+
T Consensus 12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 91 (126)
T d1pkoa_ 12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS 91 (126)
T ss_dssp EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence 346789999999987532 233479999864321100 0 0111111 122567999999999
Q ss_pred CCeEEEEEEecCCCCCccceEEEEe
Q psy10918 168 DYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 168 ~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
|+|.|.|.+.+..+..+..+.|.|.
T Consensus 92 D~G~Y~C~v~~~~~~~~~~v~L~V~ 116 (126)
T d1pkoa_ 92 DEGGYTCFFRDHSYQEEAAVELKVE 116 (126)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HCeEEEEEEEECCCEEEEEEEEEEe
Confidence 9999999999987766555444444
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.8e-09 Score=61.90 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=51.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.++|.|.... +. ..+.|++++...............+....+.|.++..+|+|.|+|...+...-...+..+
T Consensus 17 ~V~~G~~VTL~C~~~~-~~-~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl 94 (99)
T d1ucta1 17 VIPLDGSVKIQCQAIR-EA-YLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL 94 (99)
T ss_dssp EEETTCCEEEEECCCT-TC-SEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred ceeCCCeEEEEEcCCC-CC-cEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCE
Confidence 4678999999998753 33 489999877543222211111122334568899999999999999998866433233334
Q ss_pred EEe
Q psy10918 190 HIV 192 (207)
Q Consensus 190 ~v~ 192 (207)
.+.
T Consensus 95 ~L~ 97 (99)
T d1ucta1 95 ELV 97 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.88 E-value=8.1e-10 Score=64.24 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=50.1
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCe--Eec--CCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGI--IMT--NQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~--~~~--~~~l~i~~~~~ 69 (207)
+.+.+.+....+.+|++++|.|........ .+.||+.. ..+. .....++ ... ...|.|.+++.
T Consensus 2 ~~ltQsP~s~~~~~G~~vtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~ 80 (107)
T d3cx5k1 2 IELTQTPVSLAASLGDRVTISCRASQDINN-FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEP 80 (107)
T ss_dssp CCEEEESTTCCBCSSSCCEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCS
T ss_pred CCEECcCCEEEECCCCCEEEEEEcCCCcCC-CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeee
Confidence 346677888889999999999997665544 68999832 1110 0000111 111 23599999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|.|...
T Consensus 81 ~Dsa~YyCa~~ 91 (107)
T d3cx5k1 81 EDIATYFCQHH 91 (107)
T ss_dssp CCCSEEEEEEC
T ss_pred cCCCcEEeeeC
Confidence 99999999764
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=6.3e-09 Score=58.98 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=55.5
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
|+..|... + ...|..|++|+|.|........ .+.|+|+|........ .......+.|.+++..|+|.|+|....
T Consensus 4 PkP~Lsa~--P-~~~V~~G~~VTL~C~~~~~~~~-~f~L~k~g~~~~~~~~--~~~~~a~F~l~~v~~~~~G~Y~C~y~~ 77 (96)
T d1ucta2 4 GKPFLSAD--R-GLVLMPGENISLTCSSAHIPFD-RFSLAKEGELSLPQHQ--SGEHPANFSLGPVDLNVSGIYRCYGWY 77 (96)
T ss_dssp CCCEEEES--S-CSEECTTCCCEEEEECSSSCCS-EEEEEETTCSSCCSEE--ECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred CCCEEEEe--C-CCccCCCCeEEEEEeCCCCCce-EEEEEECCcccceEEc--CCCcccEEEEeccccccCcEEEEEEEc
Confidence 44555433 2 3468899999999986433333 7999999864332110 111234699999999999999998764
Q ss_pred eC----CCCccceEEEEE
Q psy10918 82 IE----GDGESNAFFLNV 95 (207)
Q Consensus 82 ~~----~~~~~~~~~l~v 95 (207)
.. .+..+..+.|.|
T Consensus 78 ~~~p~~~S~~Sd~leL~V 95 (96)
T d1ucta2 78 NRSPYLWSFPSNALELVV 95 (96)
T ss_dssp TTSTTEECCCCCCEEEEE
T ss_pred CCCCCCccCCCCCEEEEE
Confidence 32 133355555544
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.87 E-value=2e-09 Score=62.45 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=50.3
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe----cCCeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM----TNQSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~----~~~~l~i~~~~~~ 70 (207)
.+.+++....+.+|++++|.|........ .+.||+.. .... .....++.. ....|+|.+++.+
T Consensus 2 qltQsP~~l~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~ 80 (106)
T d1a0ql1 2 ELTQSPSSLSASLGGKVTITCKASQDIKK-YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE 80 (106)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ceECcCCEEEECCCCCEEEEEEcCCCCCC-CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc
Confidence 46677788888999999999987665554 68999832 1110 000111111 1235999999999
Q ss_pred CCeeeEEEEee
Q psy10918 71 SAGNYTCVGFN 81 (207)
Q Consensus 71 d~g~Y~C~~~~ 81 (207)
|+|.|+|.+..
T Consensus 81 DsA~YyCa~~~ 91 (106)
T d1a0ql1 81 DIATYYCLQYY 91 (106)
T ss_dssp GCSEEEEEECS
T ss_pred CCEeEEEEEeC
Confidence 99999998753
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.86 E-value=1.7e-09 Score=63.02 Aligned_cols=74 Identities=14% Similarity=0.279 Sum_probs=48.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc---c-------cccCCeE--ecC--CeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH---H-------NIAQGII--MTN--QSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~---~-------~~~~~~~--~~~--~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|..........+.||+.. .... . ....++. ..+ ..|+|.+++.+
T Consensus 3 vltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~ 82 (108)
T d2fx7l1 3 VLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE 82 (108)
T ss_dssp CEECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred CEEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec
Confidence 45566777888999999999987554323368899842 1111 0 0001111 111 24999999999
Q ss_pred CCeeeEEEEe
Q psy10918 71 SAGNYTCVGF 80 (207)
Q Consensus 71 d~g~Y~C~~~ 80 (207)
|+|.|.|.+.
T Consensus 83 Dsa~YyCa~~ 92 (108)
T d2fx7l1 83 DFAVYYCQQY 92 (108)
T ss_dssp GCSEEEEEEC
T ss_pred ccEEEeeecC
Confidence 9999999875
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.4e-09 Score=61.20 Aligned_cols=64 Identities=14% Similarity=0.293 Sum_probs=43.3
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCcccc--c--------cc--cCCeE-------ecCCeEEEEecCCCCCeeeEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--H--------NI--AQGII-------MTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~--~--------~~--~~~~~-------~~~~~l~i~~~~~~d~g~Y~C 77 (207)
..+|++++|.|........ .+.|++...... . .. ..++. ..+.+|.|.+++.+|+|.|.|
T Consensus 6 ~~~G~svtL~C~~s~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C 84 (97)
T d2nxyb1 6 GKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC 84 (97)
T ss_dssp EETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred EEcCCcEEEEEEEecCCCc-eEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence 4679999999998765554 799998543211 0 00 00110 112369999999999999999
Q ss_pred EEee
Q psy10918 78 VGFN 81 (207)
Q Consensus 78 ~~~~ 81 (207)
.+.+
T Consensus 85 ~v~~ 88 (97)
T d2nxyb1 85 EVED 88 (97)
T ss_dssp EETT
T ss_pred EEec
Confidence 9864
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.85 E-value=3.5e-09 Score=61.78 Aligned_cols=76 Identities=9% Similarity=0.231 Sum_probs=50.7
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEEecC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQRVN 68 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~~~~ 68 (207)
.+.+.+.+....+.+|++++|.|...+.... .+.||+.. .... .....++.. . ...|+|.+++
T Consensus 3 d~~ltQsP~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~ 81 (109)
T d1bwwa_ 3 DIQMTQSPSSLSASVGDRVTITCQASQDIIK-YLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQ 81 (109)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred CEeEEeeCCEEEECCCCCEEEEEEecCCCCC-cceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeece
Confidence 3456677778888999999999998765444 68899832 1110 000111111 1 1359999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|+|.|.|.+..
T Consensus 82 ~~Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 82 PEDIATYYCQQYQ 94 (109)
T ss_dssp GGGCEEEEEEECS
T ss_pred eCcCceEEEeecC
Confidence 9999999998753
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.84 E-value=3.5e-08 Score=56.24 Aligned_cols=89 Identities=11% Similarity=0.162 Sum_probs=54.4
Q ss_pred CceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-CCeEEEEecCCCCCeeeEEEEe
Q psy10918 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-NQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 2 p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
|+.+|... + ...|..|++|+|.|...... . .+.|+|+|.............. ...+.|..+...|+|.|+|...
T Consensus 5 pkPsLsa~--P-~~~V~~G~~VTL~C~~~~~~-~-~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~ 79 (99)
T d1nkra2 5 EKPSLSAQ--P-GPTVLAGENVTLSCSSRSSY-D-MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGS 79 (99)
T ss_dssp CCCEEEEE--S-CSEECTTCEEEEEEEESSCC-S-EEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred CCCEEEEe--C-CCcccCCCeEEEEECCCCCc-c-EEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEee
Confidence 44555433 2 34678899999999876543 3 8999999865432111111111 1346888888999999999765
Q ss_pred eeC----CCCccceEEEEE
Q psy10918 81 NIE----GDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~----~~~~~~~~~l~v 95 (207)
... .+..+..+.|.|
T Consensus 80 ~~~~p~~wS~~SdpLeL~V 98 (99)
T d1nkra2 80 FHDSPYEWSKSSDPLLVSV 98 (99)
T ss_dssp ETTEEEEECCCCCCEEEEE
T ss_pred cCCCCCCccCCCCCEEEEE
Confidence 322 233344554443
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.80 E-value=7.4e-09 Score=60.22 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=49.7
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----c------cccCCeEe----cCCeEEEEecCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----H------NIAQGIIM----TNQSLVLQRVNR 69 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----~------~~~~~~~~----~~~~l~i~~~~~ 69 (207)
+.+.+.+....+.+|++++|.|........ .+.||+.. .... . ....++.. ....|.|.+++.
T Consensus 2 ~~ltQsP~~l~~~~G~svtL~C~~s~~~~~-~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~ 80 (109)
T d1mqkl_ 2 IELTQTPVSLSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLP 80 (109)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CCEECcCCEEEECCCCCEEEEEEeCCCcCc-ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccc
Confidence 345677788888999999999998655444 68999832 1110 0 00111111 123499999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|+|.+.
T Consensus 81 ~DSa~YyCA~~ 91 (109)
T d1mqkl_ 81 EDFGSYYCQHH 91 (109)
T ss_dssp GGCEEEEEEEC
T ss_pred cCCeeEEEeee
Confidence 99999999876
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.78 E-value=1.9e-09 Score=62.30 Aligned_cols=71 Identities=15% Similarity=0.324 Sum_probs=45.1
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------c----cccCCeE----ecCCeEEEEecCCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------H----NIAQGII----MTNQSLVLQRVNRQSA 72 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~----~~~~~~~----~~~~~l~i~~~~~~d~ 72 (207)
.++ ....+.+|++++|.|........ .+.||+.. ..+. . .....+. .....|.|.+++.+|+
T Consensus 3 tQp-~sl~~~~G~svtl~C~~~~~~~~-~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 80 (103)
T d8faba1 3 TQP-PSVSVSPGQTARITCSANALPNQ-YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDE 80 (103)
T ss_dssp BCC-SEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred CCC-CeEEECCCCCEEEEEEeCCCCCC-CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHC
Confidence 344 36778899999999987654433 68899832 1111 0 0000111 1113599999999999
Q ss_pred eeeEEEEee
Q psy10918 73 GNYTCVGFN 81 (207)
Q Consensus 73 g~Y~C~~~~ 81 (207)
|.|.|.+..
T Consensus 81 a~YyCA~~~ 89 (103)
T d8faba1 81 ADYYCQAWD 89 (103)
T ss_dssp EEEEEEEEE
T ss_pred ceEEeeecC
Confidence 999998653
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.77 E-value=1.9e-08 Score=59.16 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=50.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc-----c-c----ccCCeEe------cCCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH-----H-N----IAQGIIM------TNQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~-----~-~----~~~~~~~------~~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|........ .+.||+... ... . . ...++.. ...+|+|.+++.
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~ 81 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYTVSPFS-NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL 81 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEECCSCCS-EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred cEeeCCEEEEeCCCCEEEEEEEcCCCcc-CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence 4567778889999999999998765555 799998331 110 0 0 0001111 113599999999
Q ss_pred CCCeeeEEEEeee
Q psy10918 70 QSAGNYTCVGFNI 82 (207)
Q Consensus 70 ~d~g~Y~C~~~~~ 82 (207)
+|+|.|+|.+...
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 82 SDSASYICVVSDR 94 (114)
T ss_dssp GGCSEEEEEEECS
T ss_pred hhCcccceeeecC
Confidence 9999999998753
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.7e-08 Score=57.12 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=52.9
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|.+++|.|..... . ..+.|+++|........ .....+....+.|.++...|+|.|+|...+.......+..+
T Consensus 14 ~V~~G~~VTL~C~~~~~-~-~~f~L~k~g~~~~~~~~--~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~l 89 (95)
T d1olla1 14 MVPKEKQVTICCQGNYG-A-VEYQLHFEGSLFAVDRP--KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL 89 (95)
T ss_dssp EEETTCCEEEEEECCTT-C-CEEEEEETTEEEEEECC--SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred cccCCCcEEEEEecCCC-c-cEEEEEECCCCcceeEE--ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCE
Confidence 36789999999987543 3 38999998764332110 01112344679999999999999999988765433334444
Q ss_pred EEee
Q psy10918 190 HIVS 193 (207)
Q Consensus 190 ~v~~ 193 (207)
.+.+
T Consensus 90 eL~V 93 (95)
T d1olla1 90 DLVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=2.8e-08 Score=58.34 Aligned_cols=74 Identities=12% Similarity=0.209 Sum_probs=48.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-----------ccccCCeEe----cC--CeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-----------HNIAQGIIM----TN--QSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-----------~~~~~~~~~----~~--~~l~i~~~~ 68 (207)
+.+.+....+.+|++++|.|..........+.||+. +.... .....++.. .+ ..|.|.+++
T Consensus 2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 345677788899999999999865433337899983 21110 001111211 11 249999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|+|.|.|.+..
T Consensus 82 ~~Dsg~YyCa~~~ 94 (114)
T d3bp5a1 82 RNDSGIYLCGAIS 94 (114)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cCCCeEEEEEEEe
Confidence 9999999998863
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=3.6e-08 Score=55.39 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=50.8
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC--CCCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE--GDGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~--~~~~~~~~ 91 (207)
...|..|++|+|.|...... . .+.|+|+|........ .......+.|.+++..|+|.|+|...... .+..+..+
T Consensus 12 ~~~V~~G~~VTL~C~~~~~~-~-~f~L~Keg~~~~~~~~--~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpL 87 (93)
T d1olla2 12 GPEVISGEKVTFYCRLDTAT-S-MFLLLKEGRSSHVQRG--YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPV 87 (93)
T ss_dssp CSEEETTCEEEEEEECSSSC-S-EEEEEEESSSCEEEEE--ECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCE
T ss_pred CCcccCCCcEEEEECCCCCC-C-EEEEEECCCccceeec--CCCceeEEEecccChhcCceEEEEeECCCCCcCCCCCCE
Confidence 35678899999999975433 3 8999998765432110 00122469999999999999999754322 12334455
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 88 eL~V 91 (93)
T d1olla2 88 KLLV 91 (93)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.3e-08 Score=57.77 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCceeeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEE
Q psy10918 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 1 ~p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
||+..|... + ...|..|++|+|.|..... .. .+.++|++.......... .......+.|.+++..|+|.|+|..
T Consensus 2 LPkP~Lsa~--P-s~~V~~G~~VTL~C~~~~~-~~-~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y 76 (96)
T d1ugna1 2 LPKPTLWAE--P-GSVITQGSPVTLRCQGGQE-TQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYY 76 (96)
T ss_dssp CCCCEEEEE--S-CSEEETTCCEEEEEECCTT-CC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred CCCCEEEeE--C-CCccCCCCcEEEEEeCCCC-CC-EEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEE
Confidence 566666543 2 3567899999999996432 23 788899886432111110 1112457999999999999999986
Q ss_pred eeeC--CCCccceEEEEE
Q psy10918 80 FNIE--GDGESNAFFLNV 95 (207)
Q Consensus 80 ~~~~--~~~~~~~~~l~v 95 (207)
.... .+..+..+.|.|
T Consensus 77 ~~~~~~~S~~Sd~leL~V 94 (96)
T d1ugna1 77 GSDTAGRSESSDPLELVV 94 (96)
T ss_dssp EETTTEECCCCCCEEEEE
T ss_pred eCCCCCccccCCCEEEEE
Confidence 5321 123344555544
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.75 E-value=2.2e-08 Score=58.94 Aligned_cols=71 Identities=11% Similarity=0.270 Sum_probs=46.9
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC-----ccc---c---c--------c-ccCCeE--e----cCCeEE
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN-----KTL---H---H--------N-IAQGII--M----TNQSLV 63 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~-----~~~---~---~--------~-~~~~~~--~----~~~~l~ 63 (207)
+.+....+.+|++++|.|...+......+.||+.. ..+ . . . ...+.. . ....|+
T Consensus 3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (115)
T d2atpb1 3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS 82 (115)
T ss_dssp EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence 45667788999999999998764333378999731 111 0 0 0 011111 1 123599
Q ss_pred EEecCCCCCeeeEEEEe
Q psy10918 64 LQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~ 80 (207)
|.+++.+|+|.|.|.+.
T Consensus 83 I~~~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 83 IMNVKPEDSDFYFCATV 99 (115)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ecccCCCCCcEEEEeEc
Confidence 99999999999999875
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.5e-08 Score=60.53 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=53.5
Q ss_pred eeeeeCCcEEEEEEeccCCC---CceEEEEEcCceeee--------cc------------ceeEEeec---CceEEEEEe
Q psy10918 109 LGVARQEKVNISCEVDANPP---DVKFSWTFNNSAETV--------NV------------AQAHILRS---GTLSVVAYS 162 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~--------~~------------~~~~~~~~---~~~~~l~i~ 162 (207)
..+.+|+.+.|.|.....+. ...+.|++....... .. .+.....+ .....|.|.
T Consensus 14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~ 93 (124)
T d1eaja_ 14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT 93 (124)
T ss_dssp EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence 45679999999998865432 346899873221100 00 01111111 123469999
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+++.+|+|.|.|.+.+..+.......+.|+
T Consensus 94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 999999999999999987766656566554
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.74 E-value=1.1e-08 Score=59.78 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=48.4
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccC---CCCcEEEEEEC--Ccccc----c------cccCCeEec----CCeEEEEe
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAV---PPVYKVEWRHN--NKTLH----H------NIAQGIIMT----NQSLVLQR 66 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~~i~W~~~--~~~~~----~------~~~~~~~~~----~~~l~i~~ 66 (207)
+.+.+++....+.+|++|+|.|..... .....+.||+. +.... . ....++... ...|+|.+
T Consensus 2 ~~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~ 81 (111)
T d2gsia1 2 IVLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHP 81 (111)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred CceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccc
Confidence 345677788888999999999986432 11114889983 21111 0 001122111 23599999
Q ss_pred cCCCCCeeeEEEEee
Q psy10918 67 VNRQSAGNYTCVGFN 81 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~ 81 (207)
++.+|++.|+|.+..
T Consensus 82 ~~~~DsA~YyCa~~~ 96 (111)
T d2gsia1 82 VEEEDAATYYCSHIR 96 (111)
T ss_dssp CCGGGCEEEEEEECS
T ss_pred ccccCCceEEEEECC
Confidence 999999999998653
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=9.7e-09 Score=59.50 Aligned_cols=67 Identities=9% Similarity=0.245 Sum_probs=44.3
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEEecCCCCCeeeE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~ 76 (207)
....+.+|++++|.|........ .+.||+.. .... .....++.. . ...|.|.+++.+|+|.|+
T Consensus 8 ~s~~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy 86 (106)
T d1lk3l1 8 PALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (106)
T ss_dssp SEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCc-cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence 35678899999999998765444 78999832 1110 000111111 1 135999999999999999
Q ss_pred EEEe
Q psy10918 77 CVGF 80 (207)
Q Consensus 77 C~~~ 80 (207)
|...
T Consensus 87 Ca~~ 90 (106)
T d1lk3l1 87 CQQS 90 (106)
T ss_dssp EEEC
T ss_pred cccc
Confidence 9754
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=3.2e-08 Score=58.09 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=48.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------cc----------ccCCeEe--c--CCeEEEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------HN----------IAQGIIM--T--NQSLVLQ 65 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~~----------~~~~~~~--~--~~~l~i~ 65 (207)
+.+.+.+.++.+|++|+|.|..........+.||+.. ..+. .. ...++.. . ...|.|.
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~ 82 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS 82 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence 3456788889999999999997654332268999832 1110 00 0111111 1 1259999
Q ss_pred ecCCCCCeeeEEEEee
Q psy10918 66 RVNRQSAGNYTCVGFN 81 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~ 81 (207)
+++.+|+|.|+|.+..
T Consensus 83 ~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 83 DFRRENEGYYFCSALS 98 (114)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred cCCCCCCEEEeEeEcC
Confidence 9999999999999863
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.72 E-value=3e-08 Score=57.88 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=47.8
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccC---CCCcEEEEEEC--Ccccc----c------cccCCeEec----CCeEEEEec
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAV---PPVYKVEWRHN--NKTLH----H------NIAQGIIMT----NQSLVLQRV 67 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~~i~W~~~--~~~~~----~------~~~~~~~~~----~~~l~i~~~ 67 (207)
.+.+++....+.+|++++|.|..... .....+.||+. +.... . ....++... ...|.|.++
T Consensus 3 ~ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 82 (111)
T d1j05a_ 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (111)
T ss_dssp CEEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSC
T ss_pred CEEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccc
Confidence 45577777888999999999986432 11124899983 22111 0 001111111 135999999
Q ss_pred CCCCCeeeEEEEee
Q psy10918 68 NRQSAGNYTCVGFN 81 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~ 81 (207)
+.+|+|.|.|.+.+
T Consensus 83 ~~~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 83 EADDVATYYCQQTN 96 (111)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccccCccEEEeecC
Confidence 99999999998763
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.3e-08 Score=58.25 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=51.8
Q ss_pred cccCCCcEEEEeEecc-CCCC-cEEEEEECCccccccccCC------eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 16 HIKEDSDVYFDCDIVA-VPPV-YKVEWRHNNKTLHHNIAQG------IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~-~~~~-~~i~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
.+.+|+.++|.|.+.+ .|.. ..+.|++++..+....... .......|.+.....++...|+|.+.+..+...
T Consensus 12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~ 91 (109)
T d1vcaa1 12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 91 (109)
T ss_dssp CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence 4788999999999976 4532 2689999988775421111 111123466655445556689999998765432
Q ss_pred ------cceEEEEEEeCC
Q psy10918 88 ------SNAFFLNVMYSP 99 (207)
Q Consensus 88 ------~~~~~l~v~~~~ 99 (207)
.....|.|+++|
T Consensus 92 ~~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 92 SVPTVRQAVKELQVYISP 109 (109)
T ss_dssp TSCSEEEEEEECCEECCC
T ss_pred ccccccceeEEeEEEeCC
Confidence 223446666554
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.71 E-value=3.8e-08 Score=57.70 Aligned_cols=75 Identities=11% Similarity=0.267 Sum_probs=49.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------ccc----cCCe--Eec----CCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------HNI----AQGI--IMT----NQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~~~----~~~~--~~~----~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|........ .+.|||.. .... ... ..+. ... ...|.|.+++.
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 81 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSFTDSAIY-NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP 81 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEESCCCEE-EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred cEeeCCEEEEcCCCCEEEEEEEecCccc-CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence 3455677788999999999998765544 78999832 1110 000 0001 011 12599999999
Q ss_pred CCCeeeEEEEeeeC
Q psy10918 70 QSAGNYTCVGFNIE 83 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~ 83 (207)
+|+|.|.|.+....
T Consensus 82 ~Dsg~YyCa~~~~~ 95 (113)
T d2bnqd1 82 GDSATYLCAVRPTS 95 (113)
T ss_dssp GGCEEEEEEEEESS
T ss_pred CCCcEEeEeEecCC
Confidence 99999999987543
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.70 E-value=6.7e-08 Score=56.76 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=49.1
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe------cCCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM------TNQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~------~~~~l~i~~~~~ 69 (207)
+.+++....+.+|++++|.|........ .+.|||.. ..+. ......+.. ....|+|.+++.
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSP-FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL 82 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSC-CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcC-CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc
Confidence 3455666778999999999998765555 79999832 1110 000111111 123499999999
Q ss_pred CCCeeeEEEEeee
Q psy10918 70 QSAGNYTCVGFNI 82 (207)
Q Consensus 70 ~d~g~Y~C~~~~~ 82 (207)
+|+|.|.|.+...
T Consensus 83 ~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 83 SDSALYYCALFLA 95 (115)
T ss_dssp GGCEEEEEEEEEC
T ss_pred ccCccceEEEEcC
Confidence 9999999987643
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=2.6e-08 Score=58.98 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=49.6
Q ss_pred ecCCCcccCCCcEEEEeEeccC---CCCcEEEEEECCcc------cc---------cc-c--cCCeEe------cCCeEE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAV---PPVYKVEWRHNNKT------LH---------HN-I--AQGIIM------TNQSLV 63 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~---~~~~~i~W~~~~~~------~~---------~~-~--~~~~~~------~~~~l~ 63 (207)
.+....+..|++++|.|..... .....+.|++.... +. .. . ..+... .+.+|.
T Consensus 5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 84 (119)
T d1neua_ 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV 84 (119)
T ss_dssp CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence 3455667889999999986421 12237999873211 00 00 0 011211 124699
Q ss_pred EEecCCCCCeeeEEEEeeeCCCC-ccceEEEEEE
Q psy10918 64 LQRVNRQSAGNYTCVGFNIEGDG-ESNAFFLNVM 96 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~ 96 (207)
|.+++..|+|.|.|.+.++.+.. ....+.|.|.
T Consensus 85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred ECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 99999999999999998654322 2334555553
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.69 E-value=3.2e-08 Score=57.72 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=47.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC-CCcEEEEEECC--c----cccccccCCeEec----CCeEEEEecCCCCCeeeE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--K----TLHHNIAQGIIMT----NQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~----~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~ 76 (207)
+.+++....+.+|++++|.|...+.. ....+.||+.. . .+........... ...|+|.+++.+|+|.|+
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 81 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR 81 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence 45667777888999999999875432 22278999832 1 1111111111111 125999999999999999
Q ss_pred EEEee
Q psy10918 77 CVGFN 81 (207)
Q Consensus 77 C~~~~ 81 (207)
|.+..
T Consensus 82 CA~~~ 86 (112)
T d1sq2n_ 82 CGLGV 86 (112)
T ss_dssp EEECB
T ss_pred EEEec
Confidence 98764
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.69 E-value=2e-08 Score=58.66 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=47.5
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccC----CCCcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEE
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAV----PPVYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQ 65 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~ 65 (207)
|.+.+.+....+.+|++++|.|..... .....+.||+.. ..+. .....++.. . ...|.|.
T Consensus 2 i~lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~ 81 (112)
T d1ncwl1 2 VVMTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKIS 81 (112)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred CcEeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEEC
Confidence 345677788888999999999986432 111258899832 1111 001111211 1 1259999
Q ss_pred ecCCCCCeeeEEEEe
Q psy10918 66 RVNRQSAGNYTCVGF 80 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~ 80 (207)
+++.+|++.|+|...
T Consensus 82 ~~~~eDsAvYYC~~~ 96 (112)
T d1ncwl1 82 RVEAEDLGVYYCWQG 96 (112)
T ss_dssp SCCGGGCEEEEEEEC
T ss_pred ccccCcCEeEEEEcC
Confidence 999999999999654
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.69 E-value=5.1e-08 Score=57.37 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=48.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc----c---------cccCCeE----ecC--CeEEEEe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH----H---------NIAQGII----MTN--QSLVLQR 66 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~----~---------~~~~~~~----~~~--~~l~i~~ 66 (207)
+.+.+....+.+|++++|.|..........+.||+. +.... . ....++. ..+ .+|+|.+
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP 82 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence 456677778899999999998754432237899972 22111 0 0011111 111 2589999
Q ss_pred cCCCCCeeeEEEEeee
Q psy10918 67 VNRQSAGNYTCVGFNI 82 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~ 82 (207)
++.+|+|.|.|.+...
T Consensus 83 ~~~~Dsg~YyCa~~~~ 98 (116)
T d1tvda_ 83 VRTEDSATYYCAFTLP 98 (116)
T ss_dssp CCGGGCEEEEEEEECT
T ss_pred ccccccccceeeEecC
Confidence 9999999999987643
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.69 E-value=3.9e-08 Score=57.43 Aligned_cols=75 Identities=12% Similarity=0.245 Sum_probs=47.5
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccC----CCCcEEEEEECC--cccc----------ccccCCeEec----CCeEEEE
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAV----PPVYKVEWRHNN--KTLH----------HNIAQGIIMT----NQSLVLQ 65 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~~i~W~~~~--~~~~----------~~~~~~~~~~----~~~l~i~ 65 (207)
|.+.+.+....+.+|++|+|.|...+. .....+.||+.. .... .....++... ...|.|.
T Consensus 2 ivlTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is 81 (112)
T d1mjul1 2 IVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRIS 81 (112)
T ss_dssp CCEECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEES
T ss_pred CceEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEEC
Confidence 345566777778899999999987542 112368999832 1111 0011111111 1249999
Q ss_pred ecCCCCCeeeEEEEe
Q psy10918 66 RVNRQSAGNYTCVGF 80 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~ 80 (207)
+++.+|++.|+|...
T Consensus 82 ~~~~~DsAvYyCa~~ 96 (112)
T d1mjul1 82 RVEAEDVGVYYCLQH 96 (112)
T ss_dssp SCCGGGCEEEEEEEC
T ss_pred CccccCCceEEEEeC
Confidence 999999999999654
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.67 E-value=3.6e-08 Score=57.47 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=47.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------------ccccCCeE-----ecCCeEEEEec
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------------HNIAQGII-----MTNQSLVLQRV 67 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------------~~~~~~~~-----~~~~~l~i~~~ 67 (207)
+.+++....+.+|++++|.|...+. .. .+.|||. |.... ......+. .....|+|.++
T Consensus 4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (110)
T d2aq2a1 4 VTQSPRNKVAVTGEKVTLSCQQTNN-HN-NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA 81 (110)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSC-CS-EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred EEEeCCeEEEcCCCCEEEEEEECCC-cC-cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence 4567778888999999999987653 33 7999983 21110 00001111 11235889999
Q ss_pred CCCCCeeeEEEEee
Q psy10918 68 NRQSAGNYTCVGFN 81 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~ 81 (207)
+.+|+|.|.|....
T Consensus 82 ~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 82 TPSQTSVYFCASGG 95 (110)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CHhhCEEEEEeeCC
Confidence 99999999998763
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.66 E-value=7e-08 Score=56.45 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=48.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC-CCcEEEEEEC--Cccc----cccccCCeEec--C--CeEEEEecCCCCCeeeE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHN--NKTL----HHNIAQGIIMT--N--QSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~--~~~~----~~~~~~~~~~~--~--~~l~i~~~~~~d~g~Y~ 76 (207)
+.+++....+.+|++++|+|...+.. ....+.||+. +... ........... . ..|+|.+++.+|+|.|+
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 82 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence 45667778889999999999885432 2227899973 2111 11111111111 1 25999999999999999
Q ss_pred EEEeee
Q psy10918 77 CVGFNI 82 (207)
Q Consensus 77 C~~~~~ 82 (207)
|.+...
T Consensus 83 Ca~~~~ 88 (113)
T d1vesa_ 83 CQAFYS 88 (113)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 998644
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.66 E-value=2.5e-08 Score=58.39 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=48.5
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccC----CCCcEEEEEECC--cccc----------ccccCCeEec----CCeEEEE
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAV----PPVYKVEWRHNN--KTLH----------HNIAQGIIMT----NQSLVLQ 65 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~~i~W~~~~--~~~~----------~~~~~~~~~~----~~~l~i~ 65 (207)
+.+.+++....+.+|++++|.|...+. .....+.||+.. .... .....++... ...|+|.
T Consensus 3 i~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~ 82 (113)
T d1n4xl_ 3 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 82 (113)
T ss_dssp SCEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEES
T ss_pred eeEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccC
Confidence 446677888889999999999987432 111268999832 1110 0011111111 1359999
Q ss_pred ecCCCCCeeeEEEEe
Q psy10918 66 RVNRQSAGNYTCVGF 80 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~ 80 (207)
+++.+|+|.|+|...
T Consensus 83 ~~~~~DsavYyCa~~ 97 (113)
T d1n4xl_ 83 RVEAEDLGIYYCFQG 97 (113)
T ss_dssp SCCGGGCEEEEEEEC
T ss_pred CCCcccCEEEEEEEC
Confidence 999999999999654
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.66 E-value=6.7e-08 Score=56.80 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=48.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------c-------cccCCeEe--c--CCeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------H-------NIAQGIIM--T--NQSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~-------~~~~~~~~--~--~~~l~i~~~~ 68 (207)
+.+.+....+.+|++++|.|........ .+.||+.. ..+. . ........ . ...|+|.+++
T Consensus 3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1j8hd1 3 VTQLGSHVSVSEGALVLLRCNYSSSVPP-YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH 81 (115)
T ss_dssp EECSCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred EEcCCCeEEEcCCCCEEEEEEeCCCCce-eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence 4455667778999999999998655444 79999832 1110 0 00001111 1 2259999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|+|.|.|.+..
T Consensus 82 ~~Dsa~YyCa~~~ 94 (115)
T d1j8hd1 82 MSDAAEYFCAVSE 94 (115)
T ss_dssp GGGCEEEEEEEES
T ss_pred ccCCccceeeecC
Confidence 9999999999864
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=4.1e-08 Score=58.31 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------c-c------------ccCCeE---ecC--C
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------H-N------------IAQGII---MTN--Q 60 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------~-~------------~~~~~~---~~~--~ 60 (207)
+.+.+....+.+|++++|.|........ .+.||+- +..+. . . ...++. ..+ .
T Consensus 4 ~~~~P~~~~~~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 82 (122)
T d1nezg_ 4 LRIFPKKMDAELGQKVDLVCEVLGSVSQ-GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKY 82 (122)
T ss_dssp EEEESSCEEECTTCCEEEEEEEESCCSS-CEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEE
T ss_pred eEEcCCEEEECCCCCEEEEEEEcCccCC-CEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEe
Confidence 3345777888999999999998766555 7999982 22110 0 0 001111 111 2
Q ss_pred eEEEEecCCCCCeeeEEEEe
Q psy10918 61 SLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~ 80 (207)
+|+|.+++.+|+|.|.|.+.
T Consensus 83 ~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 83 VLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp EEEESSCCGGGCEEEEEEEE
T ss_pred EEEEcccccCCCEEEEeeEe
Confidence 59999999999999999875
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.64 E-value=9.4e-08 Score=56.16 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=47.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----c---cc----cCCeE--e--cC--CeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----H---NI----AQGII--M--TN--QSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----~---~~----~~~~~--~--~~--~~l~i~~~~ 68 (207)
+.+.+....+.+|++|+|.|..........+.||+.. ..+. . .. ..++. . .+ ..|.|.+++
T Consensus 2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 3455667788999999999987543333368899832 1111 0 00 00111 1 11 249999999
Q ss_pred CCCCeeeEEEEeee
Q psy10918 69 RQSAGNYTCVGFNI 82 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~ 82 (207)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 82 IEDSAVYFCAMRGD 95 (115)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccccccccceeecC
Confidence 99999999998643
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.64 E-value=6.5e-08 Score=56.40 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=47.3
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccc------c----ccCC--eEe----cCCeEEEEecCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHH------N----IAQG--IIM----TNQSLVLQRVNRQ 70 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~------~----~~~~--~~~----~~~~l~i~~~~~~ 70 (207)
.+.+....+.+|++++|.|........ .+.||+.. ....- . .... ... ....|.|.+++.+
T Consensus 3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 3 RQSPQSLTVWEGETAILNCSYENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp ECSCSSEEEETTSCEEEEEEECCTTEE-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred EecCCEEEEcCCCCEEEEEEecCCCCc-EEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 455667778899999999997654433 68899842 11110 0 0001 111 1135999999999
Q ss_pred CCeeeEEEEee
Q psy10918 71 SAGNYTCVGFN 81 (207)
Q Consensus 71 d~g~Y~C~~~~ 81 (207)
|+|.|.|.+..
T Consensus 82 Dsa~YyCa~~~ 92 (110)
T d1u3ha1 82 DSATYFCAASA 92 (110)
T ss_dssp SCSEEEECCEE
T ss_pred CceeEeeeecC
Confidence 99999998763
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.64 E-value=8.3e-08 Score=56.30 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=47.2
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc------cccc-----C--CeEec----CCeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH------HNIA-----Q--GIIMT----NQSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~------~~~~-----~--~~~~~----~~~l~i~~~~ 68 (207)
+.+.+....+.+|++|+|.|..........+.||+. +..+. .... . ..... ...|.|.+++
T Consensus 3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (114)
T d2ak4d1 3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 82 (114)
T ss_dssp EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence 345566677899999999998654333326889983 21111 0000 0 01111 1259999999
Q ss_pred CCCCeeeEEEEeee
Q psy10918 69 RQSAGNYTCVGFNI 82 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~ 82 (207)
.+|+|.|.|.+...
T Consensus 83 ~~Dsg~YyCa~~~~ 96 (114)
T d2ak4d1 83 VVDSAVYFCALSGF 96 (114)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cccCCCceEeCCCC
Confidence 99999999987643
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=9.9e-08 Score=56.17 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCceeeeeeCCcEEEEEEeccCC--CCceEEEEEcCceee---e--c--------cce--eEEeecCceEEEEEecCCCC
Q psy10918 105 QQRVLGVARQEKVNISCEVDANP--PDVKFSWTFNNSAET---V--N--------VAQ--AHILRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~---~--~--------~~~--~~~~~~~~~~~l~i~~~~~~ 167 (207)
.|....+.+|++++|.|...... ....+.|++...... . . ..+ ...........|.|.+++.+
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~ 84 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 84 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence 45556678999999999875432 123678987321110 0 0 001 11222333567999999999
Q ss_pred CCeEEEEEEecCCCCCccceEEEEe
Q psy10918 168 DYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 168 ~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
|+|.|.|.+............|.|+
T Consensus 85 DsG~Y~C~v~~~~~~~~~~v~L~V~ 109 (116)
T d1xeda_ 85 DSGRYKCGLGINSRGLSFDVSLEVL 109 (116)
T ss_dssp GCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCceEeEEEEEE
Confidence 9999999997554333334444444
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.63 E-value=1e-07 Score=55.49 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=44.3
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc---c-------cccCCeEe----cCCeEEEEecCCCCCeeeE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH---H-------NIAQGIIM----TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~---~-------~~~~~~~~----~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+..+.+|++++|.|..........+.||+.. ..+. . ........ ....|.|.+++.+|+|.|+
T Consensus 6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 85 (110)
T d2esvd1 6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY 85 (110)
T ss_dssp SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence 45678899999999997654332268899832 2111 0 00011111 1134999999999999999
Q ss_pred EEEee
Q psy10918 77 CVGFN 81 (207)
Q Consensus 77 C~~~~ 81 (207)
|.+..
T Consensus 86 Ca~~~ 90 (110)
T d2esvd1 86 CIVVR 90 (110)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 98764
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=3.5e-08 Score=58.16 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=48.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeE--ecC--CeEEEEecCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGII--MTN--QSLVLQRVNRQ 70 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~--~~~--~~l~i~~~~~~ 70 (207)
.+.+.+....+.+|++++|.|........ .+.||+.. .... ......+. ..+ ..|.|.+++.+
T Consensus 3 ~ltQ~P~sv~~~~G~svtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~ 81 (119)
T d1f3rb2 3 KLTQSPSLLSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE 81 (119)
T ss_dssp CSCEETSEECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG
T ss_pred cEEccCCEEEECCCCCEEEEEEeCCCCcc-eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccC
Confidence 45567777788999999999997655444 68999832 1110 00011111 111 25999999999
Q ss_pred CCeeeEEEEe
Q psy10918 71 SAGNYTCVGF 80 (207)
Q Consensus 71 d~g~Y~C~~~ 80 (207)
|+|.|+|...
T Consensus 82 DsavYyCa~~ 91 (119)
T d1f3rb2 82 DVATYFCYQY 91 (119)
T ss_dssp GCSEEEEEEE
T ss_pred CCeEEEeecc
Confidence 9999999865
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.58 E-value=5.9e-07 Score=52.14 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=49.3
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
+....+.+|+.++|.|..........+.|++. ++....- ........+.....|.|.+++.+|+|.|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY 84 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence 34456789999999998765443336899983 2221110 0112233344567799999999999999
Q ss_pred EEEEecC
Q psy10918 173 ICWGSNK 179 (207)
Q Consensus 173 ~C~~~n~ 179 (207)
.|.+...
T Consensus 85 yCa~~~~ 91 (110)
T d2esvd1 85 YCIVVRS 91 (110)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 9998643
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=1e-07 Score=55.15 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=47.2
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCceeeec------------------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVN------------------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
+.+|+++.|.|....... ..+.|+|........ ..+..+..+ ..|.|.+++.+|+|.|
T Consensus 11 v~~G~~V~L~c~~~p~~~-~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n---gSL~I~~v~~~D~G~Y 86 (107)
T d1l6za1 11 VAEDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN---GSLLFQMITMKDMGVY 86 (107)
T ss_dssp CCTTCCEEEEEESCCTTC-SEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT---SCEEECSCCGGGCEEE
T ss_pred ccCCCCEEEEecCCCCCc-eEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc---ccEEEcCCCchhCEEE
Confidence 458999999997443333 489999854321100 001122222 2499999999999999
Q ss_pred EEEEecCCC-CCccceEE
Q psy10918 173 ICWGSNKIG-HQRVPCVF 189 (207)
Q Consensus 173 ~C~~~n~~g-~~~~~~~~ 189 (207)
+|.+.+..+ ....+..|
T Consensus 87 ~c~v~~~~~~~~~~~v~L 104 (107)
T d1l6za1 87 TLDMTDENYRRTQATVRF 104 (107)
T ss_dssp EEEEEETTEEECCCCEEE
T ss_pred EEEEEECCCCEEEEEEEE
Confidence 999987653 34344343
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.58 E-value=3.8e-08 Score=56.76 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=46.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc----------ccccCCeEe--c--CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH----------HNIAQGIIM--T--NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~----------~~~~~~~~~--~--~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|...... . .+.||+... ... ......+.. . ...|.|.+++.+|
T Consensus 3 vtQsP~~l~~~~G~~vtl~C~~s~~~-~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 80 (104)
T d1yqvl1 3 LTQSPAIMSASPGEKVTMTCSASSSV-N-YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETED 80 (104)
T ss_dssp EEEESSEEEECTTCCEEEEEEESSCC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeCCCC-C-ccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCccc
Confidence 45677888889999999999865433 3 578998421 110 000111111 1 1359999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
+|.|.|...
T Consensus 81 sa~YyCa~~ 89 (104)
T d1yqvl1 81 AATYYCQQW 89 (104)
T ss_dssp CEEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999764
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.7e-07 Score=54.45 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred eeeCCcEEEEEEeccC-CC-CceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEVDAN-PP-DVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~-~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+..|+.++|.|.+.+. |. .+.+.|++++..+............+. .+.|.+.....++...|+|.|++..+..
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~ 90 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 90 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCc
Confidence 5689999999999875 43 237999998776542211111111111 3456666555566668999999987654
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.57 E-value=1.9e-07 Score=52.65 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe---cCCeEEEEecCCCCCeeeEEEEeeeC----CCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSAGNYTCVGFNIE----GDG 86 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~----~~~ 86 (207)
...|..|++|+|.|...... . .+.++|+|............. ....+.|.+++..|.|.|+|...... .+.
T Consensus 10 ~~~V~~G~~VTl~C~~~~~~-~-~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~ 87 (96)
T d1nkra1 10 GPLVKSEETVILQCWSDVMF-E-HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSA 87 (96)
T ss_dssp CSEEETTCCEEEEEEESSCC-S-EEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCC
T ss_pred CCccCCCCcEEEEECCCCCC-C-EEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCCCCCcccC
Confidence 45678899999999976543 2 889999875432111111111 12359999999999999999876332 233
Q ss_pred ccceEEEEE
Q psy10918 87 ESNAFFLNV 95 (207)
Q Consensus 87 ~~~~~~l~v 95 (207)
.+..+.|.|
T Consensus 88 pSdpLeL~V 96 (96)
T d1nkra1 88 PSDPLDIVI 96 (96)
T ss_dssp CCCCEEEEE
T ss_pred CCCCEEEEC
Confidence 355555543
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.57 E-value=1.3e-07 Score=55.41 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=47.0
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------c------cccCCeEec----CCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------H------NIAQGIIMT----NQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~------~~~~~~~~~----~~~l~i~~~~~ 69 (207)
+.+++....+.+|++++|.|...+.. . .+.||+.. ..+. . .....+... ...|+|.+++.
T Consensus 3 l~Q~P~~~~~~~G~svtl~C~~s~~~-~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (115)
T d1ogad1 3 LEQSPQFLSIQEGENLTVYCNSSSVF-S-SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP 80 (115)
T ss_dssp CEEECSEEEEETTCCEEEEEECSSCC-S-CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred eEeCCCeEEECCCCCEEEEEEECCCC-c-eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence 45667778889999999999976543 3 78999832 1110 0 000001111 13599999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|+|.+.
T Consensus 81 ~Dsa~YyCa~~ 91 (115)
T d1ogad1 81 GDTGLYLCAGA 91 (115)
T ss_dssp GGCEEEEEEEE
T ss_pred cceeeEccccc
Confidence 99999999876
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.57 E-value=3.1e-07 Score=54.11 Aligned_cols=74 Identities=12% Similarity=0.328 Sum_probs=49.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------------cc--ccCCeEe---cC--CeEEEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------------HN--IAQGIIM---TN--QSLVLQ 65 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------------~~--~~~~~~~---~~--~~l~i~ 65 (207)
+.+.+....+.+|++++|.|...+.... .+.||+. +..+. .. ...++.. .+ ..|.|.
T Consensus 4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~ 82 (118)
T d2ij0c1 4 VSQHPSMVIVKSGTSVKIECRSLDTNIH-TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT 82 (118)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSSCCS-EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred EEEcCCeEEEcCCCCEEEEEEEcCCccc-EEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence 4456677788999999999998665544 8999983 22111 00 0111211 11 249999
Q ss_pred ecCCCCCeeeEEEEeee
Q psy10918 66 RVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~ 82 (207)
+++.+|+|.|.|.+...
T Consensus 83 ~~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 83 SAHPEDSGFYVCSALAG 99 (118)
T ss_dssp SCCGGGCEEEEEEEECS
T ss_pred ccccccCceEEEEEecC
Confidence 99999999999998643
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=8.3e-08 Score=55.44 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=47.0
Q ss_pred cccCCCcEEEEeEeccCCC---CcEEEEEECCcccccc----------ccCCeEe---cCCeEEEEecCCCCCeeeEEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHN----------IAQGIIM---TNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~---~~~i~W~~~~~~~~~~----------~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
+...|++++|.|....... ...+.|.+++..+... ...+... .+.+|.|.+++.+|+|.|.|.+
T Consensus 5 t~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V 84 (105)
T d1dr9a1 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVV 84 (105)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEE
T ss_pred EEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEE
Confidence 3567999999998654321 1367888877554210 0111111 2357999999999999999999
Q ss_pred eeeCCCC
Q psy10918 80 FNIEGDG 86 (207)
Q Consensus 80 ~~~~~~~ 86 (207)
.+..+..
T Consensus 85 ~~~~~~~ 91 (105)
T d1dr9a1 85 LKYEKDA 91 (105)
T ss_dssp EECCTTS
T ss_pred EeCCCCC
Confidence 8655444
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.55 E-value=5.8e-07 Score=51.75 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=49.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeee--c---------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETV--N---------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~--~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|........ .+.|++.. ..... . ..+......+....|.|.++..+|+|.|.
T Consensus 8 ~~l~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Yy 86 (106)
T d1a0ql1 8 SSLSASLGGKVTITCKASQDIKK-YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYY 86 (106)
T ss_dssp SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred CEEEECCCCCEEEEEEcCCCCCC-CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEE
Confidence 33456799999999988765554 79999732 21111 0 01223334455678999999999999999
Q ss_pred EEEecC
Q psy10918 174 CWGSNK 179 (207)
Q Consensus 174 C~~~n~ 179 (207)
|.+.+.
T Consensus 87 Ca~~~~ 92 (106)
T d1a0ql1 87 CLQYYN 92 (106)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 998653
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.55 E-value=9.4e-08 Score=56.14 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=46.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc------cc-------ccCCeE----ecCCeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH------HN-------IAQGII----MTNQSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~------~~-------~~~~~~----~~~~~l~i~~~~ 68 (207)
+.+++....+.+|++++|.|........ .+.||+. +.... .. ...... .....|.|.+++
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~-~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1i9ea_ 3 VTQPDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH 81 (115)
T ss_dssp EECCCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred EEcCCCeEEECCCCCEEEEEEEcCCCCC-CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence 3455566778899999999997655444 7889982 21110 00 000011 112359999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|+|.|+|.+.
T Consensus 82 ~~Dsg~YyCa~~ 93 (115)
T d1i9ea_ 82 WSDSAVYFCAVS 93 (115)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccccceeccccc
Confidence 999999999875
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.54 E-value=4.3e-07 Score=53.11 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=48.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCce--ee---e--------ccceeEE--eecCceEEEEEecCCCCCCeE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA--ET---V--------NVAQAHI--LRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~---~--------~~~~~~~--~~~~~~~~l~i~~~~~~~~g~ 171 (207)
....+.+|+.++|.|........ .+.|++.... .. . ...+... ........|.|.+++.+|+|.
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~ 86 (114)
T d2cdea1 8 QSLIILEGKNCTLQCNYTVSPFS-NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS 86 (114)
T ss_dssp SEEEEETTCCCEEEEEECCSCCS-EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred CEEEEeCCCCEEEEEEEcCCCcc-CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence 34456799999999998765555 8999973211 10 0 0001111 122345679999999999999
Q ss_pred EEEEEecCC
Q psy10918 172 LICWGSNKI 180 (207)
Q Consensus 172 y~C~~~n~~ 180 (207)
|.|.+....
T Consensus 87 Y~Ca~~~~~ 95 (114)
T d2cdea1 87 YICVVSDRG 95 (114)
T ss_dssp EEEEEECSC
T ss_pred cceeeecCC
Confidence 999998754
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.54 E-value=3.3e-07 Score=52.10 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=42.6
Q ss_pred ccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccC--CeEecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ--GIIMTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+..|+.++|.|.+.+. |....++|++||..+...... .....+++ .....+...+.+.|+|.+.+.
T Consensus 14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~ 85 (100)
T d1muja1 14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW 85 (100)
T ss_dssp CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence 4568889999999884 555699999999888642111 11122222 222233456778999999864
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.53 E-value=1.9e-07 Score=55.13 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=49.3
Q ss_pred ceeeeeeCCcEEEEEEeccC---CCCceEEEEEcCc--e--eee--c-cc------------eeEEe--ecCceEEEEEe
Q psy10918 107 RVLGVARQEKVNISCEVDAN---PPDVKFSWTFNNS--A--ETV--N-VA------------QAHIL--RSGTLSVVAYS 162 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~~~--~--~~~--~-~~------------~~~~~--~~~~~~~l~i~ 162 (207)
....+..|+.++|.|..... .....+.|++... . ... . .. +..+. .......|.|.
T Consensus 7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (119)
T d1neua_ 7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH 86 (119)
T ss_dssp SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEEC
Confidence 33456789999999986532 1234899987321 1 000 0 00 01111 11123469999
Q ss_pred cCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 163 PNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
+++..|+|.|.|.+.+..+.......+.+.+
T Consensus 87 ~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V 117 (119)
T d1neua_ 87 NLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117 (119)
T ss_dssp SCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred CCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence 9999999999999998655443343444443
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.53 E-value=2e-07 Score=54.48 Aligned_cols=73 Identities=16% Similarity=0.316 Sum_probs=47.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------cc----cc-CCeE----ecCCeEEEEecCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------HN----IA-QGII----MTNQSLVLQRVNRQ 70 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~~----~~-~~~~----~~~~~l~i~~~~~~ 70 (207)
+.+.+....+.+|++++|.|..... .. .+.||+.. ..+. .. .. .... .....|.|.+++.+
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFTTT-MR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE 81 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC-CS-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred eEECCCEEEEcCCCCEEEEEEEecC-Cc-cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence 3466777888999999999997653 33 78999832 1110 00 00 0000 11125999999999
Q ss_pred CCeeeEEEEeee
Q psy10918 71 SAGNYTCVGFNI 82 (207)
Q Consensus 71 d~g~Y~C~~~~~ 82 (207)
|+|.|.|.+...
T Consensus 82 Dsa~YyCa~~~~ 93 (113)
T d1h5ba_ 82 DSGTYFCAAEAS 93 (113)
T ss_dssp GCEEEEEEEECS
T ss_pred HCEEEEEEecCC
Confidence 999999987643
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.53 E-value=1.1e-07 Score=55.53 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=47.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc------cc----ccCCeE--ec----CCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH------HN----IAQGII--MT----NQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~------~~----~~~~~~--~~----~~~l~i~~~~~ 69 (207)
+.+.+....+.+|++++|.|........ .+.||+. +.... .. ...++. .. ..+|.|.+++.
T Consensus 3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (111)
T d1bd2d1 3 VKQNSPSLSVQEGRISILNCDYTNSMFD-YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP 81 (111)
T ss_dssp EECCCSEEEEETTSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred eEccCCEEEEcCCCCEEEEEEeCCCCCC-eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence 3456667778899999999987665554 6889983 21111 00 001111 11 23599999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|.|.+.
T Consensus 82 ~Dsa~YyCa~~ 92 (111)
T d1bd2d1 82 GDSAVYFCAAM 92 (111)
T ss_dssp GGCEEEEEEEE
T ss_pred cccEEEEeecc
Confidence 99999999876
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.2e-07 Score=52.64 Aligned_cols=69 Identities=9% Similarity=0.168 Sum_probs=42.3
Q ss_pred CcccCCCcEEEEeEeccC-CCCcEEEEEECC--cccc----------ccccCCeEe----cC--CeEEEEecCCCCCeee
Q psy10918 15 DHIKEDSDVYFDCDIVAV-PPVYKVEWRHNN--KTLH----------HNIAQGIIM----TN--QSLVLQRVNRQSAGNY 75 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~--~~~~----------~~~~~~~~~----~~--~~l~i~~~~~~d~g~Y 75 (207)
....+|++++|.|..... .....+.|+|.. .... .....+... .. .+|+|.+++.+|+|.|
T Consensus 6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y 85 (108)
T d1hkfa_ 6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY 85 (108)
T ss_dssp EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence 446789999999986543 222257798832 1110 000111111 11 2599999999999999
Q ss_pred EEEEeeeC
Q psy10918 76 TCVGFNIE 83 (207)
Q Consensus 76 ~C~~~~~~ 83 (207)
.|.+..+.
T Consensus 86 ~C~v~~~~ 93 (108)
T d1hkfa_ 86 WCRIYRPS 93 (108)
T ss_dssp EEEEECTT
T ss_pred EEEEecCC
Confidence 99987443
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-07 Score=54.03 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=44.6
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-------------eeEEe---ecCceEEEEEecCCCCCCeEEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-------------QAHIL---RSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-------------~~~~~---~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
...+|++++|.|........ .+.|++.......... +.... .......|.|.+++.+|+|.|.
T Consensus 5 ~~~~G~svtL~C~~s~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~ 83 (97)
T d2nxyb1 5 LGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (97)
T ss_dssp EEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred EEEcCCcEEEEEEEecCCCc-eEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence 34689999999987765554 8999985433211110 00000 0112345999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+.+
T Consensus 84 C~v~~ 88 (97)
T d2nxyb1 84 CEVED 88 (97)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99976
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.4e-07 Score=55.43 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=49.2
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECCcccc------c------cccCCe--Eec----CCeEEEEecCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNKTLH------H------NIAQGI--IMT----NQSLVLQRVNRQS 71 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~~~~------~------~~~~~~--~~~----~~~l~i~~~~~~d 71 (207)
+....+.+|++|+|.|...... ....+.|++....-. . ....+. ... ..+|.|.+++.+|
T Consensus 6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D 85 (116)
T d1xeda_ 6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 85 (116)
T ss_dssp CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence 3455667899999999864321 122578987331110 0 000111 111 1359999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
+|.|.|.+..... .....+.|+|..
T Consensus 86 sG~Y~C~v~~~~~-~~~~~v~L~V~~ 110 (116)
T d1xeda_ 86 SGRYKCGLGINSR-GLSFDVSLEVLE 110 (116)
T ss_dssp CEEEEEEESCGGG-CCEEEEEEEEEC
T ss_pred CEEEEEEEEcCCC-CceEeEEEEEEC
Confidence 9999999864322 223355666664
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.1e-07 Score=54.19 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=46.7
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..|+.++|.|.+.|+ |..+.+.|.+||..+.... .......+++........+..++.+.|+|.+....-
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl 88 (100)
T d1k5nb_ 17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTL 88 (100)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTC
T ss_pred cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCC
Confidence 357788999999996 5667999999987653211 122333344444444445556677899999998543
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=1.7e-07 Score=53.32 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=45.0
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce-eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ-AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|+.++|.|.+.|+ |..+.+.|.++|..+...... .....++.........+...+.+.|+|.+....
T Consensus 17 ~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s 86 (99)
T d1lk2b_ 17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS 86 (99)
T ss_dssp TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred CCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence 56778999999996 556799999998765322211 223334444444444455667788999999854
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.51 E-value=4.9e-07 Score=52.04 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=48.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|........ .+.|++. |...... ..+......++...|.|.+++.+|+|.|.
T Consensus 9 ~slsv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (106)
T d1i8ka_ 9 ASLSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY 87 (106)
T ss_dssp SEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CEEEECCCCCEEEEEEeCCCCCc-cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence 34456789999999988765554 7899973 2221110 11122333455678999999999999999
Q ss_pred EEEecC
Q psy10918 174 CWGSNK 179 (207)
Q Consensus 174 C~~~n~ 179 (207)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T d1i8ka_ 88 CLQSFN 93 (106)
T ss_dssp EEECSS
T ss_pred EecCcc
Confidence 987653
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.51 E-value=2.3e-07 Score=51.85 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=43.7
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+..+.|.|.+.|+ |..+.+.|.++|..............++..+......+...+...|+|.+....
T Consensus 15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~s 82 (91)
T d3frua1 15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEG 82 (91)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCC
Confidence 3478999999996 667899999998765433322233334443333333344456678999999754
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.51 E-value=1.1e-06 Score=51.17 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=50.1
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cce--eEEeecCceEEEEEecCCCCCCe
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQ--AHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~--~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
|....+.+|+.++|.|...+.... .+.|++. ++..... ..+ ...........|.|.+++.+|+|
T Consensus 7 P~~v~v~~G~sv~L~C~~s~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg 85 (113)
T d2bnqd1 7 PAALSVPEGENLVLNCSFTDSAIY-NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA 85 (113)
T ss_dssp SSEEEEETTCCEEEEEEESCCCEE-EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred CCEEEEcCCCCEEEEEEEecCccc-CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence 334556799999999998765544 8999983 2221110 001 11222344668999999999999
Q ss_pred EEEEEEecCCC
Q psy10918 171 TLICWGSNKIG 181 (207)
Q Consensus 171 ~y~C~~~n~~g 181 (207)
.|.|.+....+
T Consensus 86 ~YyCa~~~~~~ 96 (113)
T d2bnqd1 86 TYLCAVRPTSG 96 (113)
T ss_dssp EEEEEEEESSS
T ss_pred EEeEeEecCCC
Confidence 99999986543
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.6e-07 Score=55.63 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=43.8
Q ss_pred cCCCcccCCCcEEEEeEeccC------CCCcEEEEEECCccccc---------------cccCCeEe------cCCeEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV------PPVYKVEWRHNNKTLHH---------------NIAQGIIM------TNQSLVL 64 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~------~~~~~i~W~~~~~~~~~---------------~~~~~~~~------~~~~l~i 64 (207)
+.+.++.+|++|+|.|..... .....+.|++....-.. ....+... .+.+|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 355678899999999987321 12225789885321110 00011111 1246999
Q ss_pred EecCCCCCeeeEEEEee
Q psy10918 65 QRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~ 81 (207)
.+++.+|+|.|.|.+..
T Consensus 88 ~~v~~~DsG~Y~C~v~~ 104 (121)
T d2g5ra1 88 RDARMSDAGRYFFRMEK 104 (121)
T ss_dssp CSCCGGGCEEEEEEEEE
T ss_pred CCCChHHCEEEEEEEEe
Confidence 99999999999999864
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=5e-07 Score=51.20 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=41.5
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc--CCeEe--cCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA--QGIIM--TNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..|..|++|+|.|...... . .+.++|++........ ..... ....+.|.+++..|.|.|+|.....
T Consensus 13 ~~v~~G~~VTL~C~~~~~~-~-~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 82 (98)
T d1ugna2 13 PVVNSGGNVTLQCDSQVAF-D-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 82 (98)
T ss_dssp SEEETTCCEEEEEECSSCC-S-EEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred CccCCCCcEEEEeCCCCCC-C-EEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence 4578999999999965433 2 7888898765332110 00001 1135999999999999999987643
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=7.9e-08 Score=55.78 Aligned_cols=68 Identities=9% Similarity=0.185 Sum_probs=43.3
Q ss_pred CCcccCCCcEEEEeEeccCCC--CcEEEEEEC--Ccccc----c------cccCCeE----ecCCeEEEEecCCCCCeee
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPP--VYKVEWRHN--NKTLH----H------NIAQGII----MTNQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~--~~~~~----~------~~~~~~~----~~~~~l~i~~~~~~d~g~Y 75 (207)
...+.+|++++|.|....... ...+.||+. +.... . ....++. .....|.|.+++.+|+|.|
T Consensus 9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y 88 (110)
T d1oaql_ 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY 88 (110)
T ss_dssp EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence 566889999999999864321 123889982 21111 0 0011111 1123599999999999999
Q ss_pred EEEEee
Q psy10918 76 TCVGFN 81 (207)
Q Consensus 76 ~C~~~~ 81 (207)
+|....
T Consensus 89 yCa~~~ 94 (110)
T d1oaql_ 89 FCALWY 94 (110)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 998763
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.49 E-value=3.5e-07 Score=53.50 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=46.2
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc------c-------cccCCeE-----ecCCeEEEEecC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH------H-------NIAQGII-----MTNQSLVLQRVN 68 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~------~-------~~~~~~~-----~~~~~l~i~~~~ 68 (207)
.+.+....+.+|++++|.|.... ... .+.||+... .+. . ....... .....|.|.+++
T Consensus 3 tQsP~~~~~~~G~svtl~C~~s~-~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (114)
T d1ogae1 3 TQSPKYLFRKEGQNVTLSCEQNL-NHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 80 (114)
T ss_dssp ECSCSEEEEETTCCEEECCEECS-CCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred EEcCCeEEEcCCCCEEEEEEEec-CCC-cEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence 34566677889999999999753 333 799998321 110 0 0000111 112359999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|+|.|.|....
T Consensus 81 ~~DSa~YyCa~~~ 93 (114)
T d1ogae1 81 KNPTAFYLCASSS 93 (114)
T ss_dssp SCCCEEEEEEEES
T ss_pred cCCceeEEEeecc
Confidence 9999999998763
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.49 E-value=1.6e-07 Score=54.89 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=43.6
Q ss_pred CCcccCCCcEEEEeEeccCC-CCcEEEEEECC--cccc----------ccccCCeEe--c--CCeEEEEecCCCCCeeeE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--KTLH----------HNIAQGIIM--T--NQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~~~~----------~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~ 76 (207)
...+.+|++++|.|...+.. ....+.||+.. .... .....++.. + ...|.|.+++.+|++.|+
T Consensus 9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy 88 (114)
T d2rhea_ 9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY 88 (114)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence 56788999999999976543 12268899832 1110 000111111 1 235999999999999999
Q ss_pred EEEee
Q psy10918 77 CVGFN 81 (207)
Q Consensus 77 C~~~~ 81 (207)
|....
T Consensus 89 CA~~~ 93 (114)
T d2rhea_ 89 CAAWN 93 (114)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 98763
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=6.4e-07 Score=50.90 Aligned_cols=66 Identities=11% Similarity=0.235 Sum_probs=43.7
Q ss_pred ccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccC-CeEecCCeE---EEEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSL---VLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l---~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+..|+.++|.|.+.+. |....++|.+||..+...... .....++++ ....+..++.+.|+|.+...
T Consensus 16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~ 86 (100)
T d1k5nb_ 16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV 86 (100)
T ss_dssp CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence 3568889999999884 655689999999988643221 122223332 22244566778999999864
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.47 E-value=1.2e-07 Score=55.36 Aligned_cols=74 Identities=11% Similarity=0.241 Sum_probs=47.2
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccC-----CCCcEEEEEECC--cccc----------ccccCCeE--ec--CCeEEEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAV-----PPVYKVEWRHNN--KTLH----------HNIAQGII--MT--NQSLVLQ 65 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~~i~W~~~~--~~~~----------~~~~~~~~--~~--~~~l~i~ 65 (207)
.+.+.+....+.+|++++|.|...+. .....+.||+.. ..+. ......+. .. ...|.|.
T Consensus 3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~ 82 (113)
T d1q9ra1 3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIT 82 (113)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEec
Confidence 45577788888999999999986432 111248899832 1110 00011111 11 1259999
Q ss_pred ecCCCCCeeeEEEEe
Q psy10918 66 RVNRQSAGNYTCVGF 80 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~ 80 (207)
+++.+|+|.|.|...
T Consensus 83 ~l~~~Dsa~YyCA~~ 97 (113)
T d1q9ra1 83 SVQAEDLAVYYCKQS 97 (113)
T ss_dssp SCCGGGCEEEEEEEC
T ss_pred ccccCCCeEEEeccc
Confidence 999999999999865
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.4e-06 Score=49.34 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=46.3
Q ss_pred eeeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeee----c-------cceeE--EeecCceEEEEEecCCCCCCeE
Q psy10918 108 VLGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETV----N-------VAQAH--ILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~----~-------~~~~~--~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
.....+|++++|.|...... ....+.|++. +..... . ..+.. .........|.|.+++.+|+|.
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~ 84 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH 84 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence 34567999999999875432 2236789873 221110 0 01111 1223446679999999999999
Q ss_pred EEEEEecCC
Q psy10918 172 LICWGSNKI 180 (207)
Q Consensus 172 y~C~~~n~~ 180 (207)
|.|.+....
T Consensus 85 Y~C~v~~~~ 93 (108)
T d1hkfa_ 85 YWCRIYRPS 93 (108)
T ss_dssp EEEEEECTT
T ss_pred EEEEEecCC
Confidence 999988544
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.45 E-value=4.8e-07 Score=52.64 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=45.8
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------------c-cccCCeEec-----CCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------------H-NIAQGIIMT-----NQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------------~-~~~~~~~~~-----~~~l~i~~~ 67 (207)
.+.+....+.+|++++|.|..... .. .+.||+. +..+. . ....++... ...|+|.++
T Consensus 3 tQ~P~~~~~~~G~svtl~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~ 80 (111)
T d2esve1 3 TQFPSHSVIEKGQTVTLRCDPISG-HD-NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA 80 (111)
T ss_dssp EEECSEEEEETTCCEEEEEECCTT-CS-EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred EECCCEEEECCCCCEEEEEEECCC-Cc-eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence 355677788999999999985443 23 7899983 21111 0 001111111 135999999
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|+|.|.|.+.
T Consensus 81 ~~~Dsa~YyCa~~ 93 (111)
T d2esve1 81 ELEDSGVYFCASS 93 (111)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccCCCceEEEeee
Confidence 9999999999865
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.45 E-value=8.1e-07 Score=51.20 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=49.5
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|....+.+|+.++|.|...+.... .+.|++. +...... ..+......+....|.|.++..+|+|.|
T Consensus 8 P~~ltv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y 86 (107)
T d1ospl1 8 SSSFSVSLGDRVTITCKASEDIYS-RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATY 86 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEE
T ss_pred CCEEEECCCCCEEEEEecCCCccc-ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcE
Confidence 344557789999999988765554 7999983 2211110 0122333445567899999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+..
T Consensus 87 yCa~~~ 92 (107)
T d1ospl1 87 FCQQYW 92 (107)
T ss_dssp EEEECS
T ss_pred EEeecc
Confidence 998864
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.44 E-value=1.6e-06 Score=50.64 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=48.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc--------------ceeEEeecCceEEEEEecCCCCCCe
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV--------------AQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
....+.+|+.++|.|..........+.|++. ++...... ........+....|.|.++..+|+|
T Consensus 8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg 87 (114)
T d2ak4d1 8 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSA 87 (114)
T ss_dssp CEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred CeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCC
Confidence 3445789999999998654433336889973 22211100 0112222344667999999999999
Q ss_pred EEEEEEecCCC
Q psy10918 171 TLICWGSNKIG 181 (207)
Q Consensus 171 ~y~C~~~n~~g 181 (207)
.|.|.+....+
T Consensus 88 ~YyCa~~~~~~ 98 (114)
T d2ak4d1 88 VYFCALSGFYN 98 (114)
T ss_dssp EEEEEEECSBT
T ss_pred CceEeCCCCCC
Confidence 99998876543
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.44 E-value=2e-06 Score=48.39 Aligned_cols=68 Identities=18% Similarity=0.079 Sum_probs=46.8
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|.+++|.|..... . ..+.++|+|...............+....+.|.+++..|+|.|+|.-...
T Consensus 12 ~V~~G~~VTl~C~~~~~-~-~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1nkra1 12 LVKSEETVILQCWSDVM-F-EHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT 79 (96)
T ss_dssp EEETTCCEEEEEEESSC-C-SEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred ccCCCCcEEEEECCCCC-C-CEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence 46789999999997643 3 38899998765332221111222233467899999999999999987643
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.44 E-value=1.7e-07 Score=54.64 Aligned_cols=70 Identities=13% Similarity=0.286 Sum_probs=44.5
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--cccc----------ccccCCe--Ee--cCCeEEEEecCCCCCe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--KTLH----------HNIAQGI--IM--TNQSLVLQRVNRQSAG 73 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~~~~----------~~~~~~~--~~--~~~~l~i~~~~~~d~g 73 (207)
+....+.+|++++|.|...+.. ....+.||+.. ..+. ......+ .. ....|.|.+++.+|+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 86 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA 86 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence 4567788999999999876532 11158899832 1110 0000011 11 1235999999999999
Q ss_pred eeEEEEee
Q psy10918 74 NYTCVGFN 81 (207)
Q Consensus 74 ~Y~C~~~~ 81 (207)
.|+|.+.+
T Consensus 87 ~YyCa~~~ 94 (112)
T d1lgva1 87 DYYCSSYD 94 (112)
T ss_dssp EEEEEEEC
T ss_pred EEEEeeec
Confidence 99998764
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.44 E-value=1.7e-07 Score=54.64 Aligned_cols=73 Identities=12% Similarity=0.280 Sum_probs=45.7
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--cccc----------ccccCCe--Eec----CCeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTLH----------HNIAQGI--IMT----NQSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~~----------~~~~~~~--~~~----~~~l~i~~~~ 68 (207)
+.+ +....+.+|++++|.|...+... ...+.||+.. ..+. .....++ ..+ ...|.|.+++
T Consensus 4 ltQ-P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~ 82 (111)
T d1cd0a_ 4 LNQ-PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLK 82 (111)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCC
T ss_pred Eec-CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCC
Confidence 344 34677899999999999765432 1248899832 1110 0001111 111 1259999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|++.|+|....
T Consensus 83 ~~Dsa~YyCA~~~ 95 (111)
T d1cd0a_ 83 TEDEADYYCQSYD 95 (111)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cccCcEEEEeecc
Confidence 9999999998653
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=98.44 E-value=1.4e-06 Score=49.24 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=45.6
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc--eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA--QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.++..+|.|.+.+. |..+.+.|+++|........ ......++..+.+....+...+...|+|.+.+..-
T Consensus 17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl 88 (98)
T d1d5mb1 17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV 88 (98)
T ss_dssp ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTC
T ss_pred cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCC
Confidence 35567899999996 55679999999876543221 12233345555555566778888899999998654
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2e-06 Score=48.06 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=45.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.+..|.+++|.|..... . ..+.++|+|...... ....+....+.|.+++..|+|.|+|...
T Consensus 14 ~V~~G~~VTL~C~~~~~-~-~~f~L~Keg~~~~~~-----~~~~~~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 14 EVISGEKVTFYCRLDTA-T-SMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp EEETTCEEEEEEECSSS-C-SEEEEEEESSSCEEE-----EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred cccCCCcEEEEECCCCC-C-CEEEEEECCCcccee-----ecCCCceeEEEecccChhcCceEEEEeE
Confidence 46789999999987643 3 389999987654322 1223455678999999999999999754
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.43 E-value=9.7e-07 Score=50.90 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=49.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|++++|.|........ .+.|++.. ...... ..+......+....|.|.+++.+|+|.|.
T Consensus 9 ~~l~v~~G~~vtL~C~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (107)
T d1j1pl_ 9 ATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (107)
T ss_dssp SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CeEEECCCCCEEEEEEecCCCCc-ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence 34457799999999988765554 79999742 221110 01223344555678999999999999999
Q ss_pred EEEecC
Q psy10918 174 CWGSNK 179 (207)
Q Consensus 174 C~~~n~ 179 (207)
|.+.+.
T Consensus 88 Ca~~~~ 93 (107)
T d1j1pl_ 88 CQQANS 93 (107)
T ss_dssp EEECSS
T ss_pred EEcCCC
Confidence 987643
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.43 E-value=2.4e-06 Score=49.23 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=49.4
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeee-----------ccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETV-----------NVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|....+.+|++++|.|........ .+.|++. ++.... ...+...........|.|.+++.+|+|.|
T Consensus 8 P~~l~v~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y 86 (107)
T d1kcvl1 8 PKSMGMSVGEAVTLNCKASENVGT-YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY 86 (107)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CCEEeECCCCCEEEEEEecCCcCC-ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence 344557789999999998776555 7999973 221110 01122233444567899999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+..
T Consensus 87 yCa~~~ 92 (107)
T d1kcvl1 87 YCGQSY 92 (107)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 998764
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.43 E-value=7.4e-08 Score=55.82 Aligned_cols=67 Identities=13% Similarity=0.296 Sum_probs=43.6
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeE--ec--CCeEEEEecCCCCCeeeEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGII--MT--NQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~--~~--~~~l~i~~~~~~d~g~Y~C 77 (207)
...+.+|++++|.|........ .+.||+.. .... .....++. .+ ..+|.|.+++.+|+|.|.|
T Consensus 9 sl~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC 87 (109)
T d1w72l1 9 SVSVAPGQTARITCGGNNIGSR-SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC 87 (109)
T ss_dssp EEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred eEEECCCCCEEEEEEcCCCCCc-ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence 5678899999999997554333 68899732 1111 00011111 11 1258999999999999999
Q ss_pred EEee
Q psy10918 78 VGFN 81 (207)
Q Consensus 78 ~~~~ 81 (207)
....
T Consensus 88 A~~~ 91 (109)
T d1w72l1 88 QVWD 91 (109)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8764
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=2.1e-06 Score=50.05 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=48.6
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceee-e---cc--------ceeEEee--cCceEEEEEecCCCCCC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAET-V---NV--------AQAHILR--SGTLSVVAYSPNSELDY 169 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~-~---~~--------~~~~~~~--~~~~~~l~i~~~~~~~~ 169 (207)
|....+.+|+.++|.|..........+.|++. ++... + .. .+..... ......|.|.+++.+|+
T Consensus 6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds 85 (114)
T d3bp5a1 6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS 85 (114)
T ss_dssp SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCC
Confidence 34455789999999999865444347899973 22111 0 00 1112222 23356799999999999
Q ss_pred eEEEEEEecCC
Q psy10918 170 GTLICWGSNKI 180 (207)
Q Consensus 170 g~y~C~~~n~~ 180 (207)
|.|.|.+....
T Consensus 86 g~YyCa~~~~~ 96 (114)
T d3bp5a1 86 GIYLCGAISLH 96 (114)
T ss_dssp EEEEEEEECSS
T ss_pred eEEEEEEEeCC
Confidence 99999987543
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.42 E-value=1.8e-07 Score=54.58 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=45.8
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc-------c-------cccCCeEe-----cCCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH-------H-------NIAQGIIM-----TNQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~-------~-------~~~~~~~~-----~~~~l~i~~~ 67 (207)
.+++....+.+|++++|.|..... .. .+.||+.. ..+. . ....++.. ....|+|.++
T Consensus 3 tQ~P~~~~~~~G~svtl~C~~~~~-~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (112)
T d1kgce1 3 SQSPRYKVAKRGQDVALRCDPISG-HV-SLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT 80 (112)
T ss_dssp EEECSEEEEETTCCEEEEEECCTT-CC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred EECCCeEEECCCCCEEEEEEECCC-CC-EEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence 356677778999999999986443 33 79999832 1110 0 00111111 1235999999
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|+|.|.|.+.
T Consensus 81 ~~~Dsa~YyCa~~ 93 (112)
T d1kgce1 81 QQEDSAVYLCASS 93 (112)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcCCCEEEEEeee
Confidence 9999999999875
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.42 E-value=3.8e-07 Score=53.29 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=46.1
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEE--CCcccc-------------ccccCCeE-e-c---CCeEEEEecCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH--NNKTLH-------------HNIAQGII-M-T---NQSLVLQRVNR 69 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~--~~~~~~-------------~~~~~~~~-~-~---~~~l~i~~~~~ 69 (207)
+.+....+.+|++++|.|...+.. . .+.||+ .+.... .....++. . . ...|+|.+++.
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~~~-~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (113)
T d2ntsp1 4 QTPRYLIKTRGQQVTLSCSPISGH-R-SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL 81 (113)
T ss_dssp EECSEEEEETTCCEEEEEECSTTC-C-EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred eCCCeEEECCCCCEEEEEEECCCC-C-EEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence 556667788999999999965433 3 789998 222211 00011111 1 1 13599999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|.|.+..
T Consensus 82 ~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 82 GDSALYLCASSL 93 (113)
T ss_dssp GGCEEEEEEEES
T ss_pred ccceeeeeeeeC
Confidence 999999998763
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.42 E-value=1.4e-06 Score=50.04 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=48.2
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec--c---------ceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN--V---------AQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~--~---------~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|++++|.|........ .+.|++. |+....- . .+......+....|.|.+++.+|+|.|.|
T Consensus 10 s~~~~~G~svtl~C~~s~~~~~-~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 88 (107)
T d1c5cl1 10 SLSASLGERVSLTCRTSQEISG-YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYC 88 (107)
T ss_dssp EEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred EEEECCCCCEEEEEEeCCCCCC-CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEE
Confidence 3456789999999998765554 7899973 2221110 0 11223334456689999999999999999
Q ss_pred EEecC
Q psy10918 175 WGSNK 179 (207)
Q Consensus 175 ~~~n~ 179 (207)
.+.+.
T Consensus 89 a~~~~ 93 (107)
T d1c5cl1 89 LQYAS 93 (107)
T ss_dssp EECSS
T ss_pred ecCcC
Confidence 87653
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.41 E-value=6.8e-07 Score=50.74 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=44.9
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..|+..+|.|.+.++ |..+.+.|+++|..+...... .....++.........+..++.+.|+|.+....
T Consensus 15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s 86 (100)
T d1muja1 15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG 86 (100)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence 456788999999996 556799999998775432211 122233343333333444566778999999864
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.3e-06 Score=48.95 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=44.4
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeecc-ceeEEee--cCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNV-AQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~-~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..++|.|.+.++ |..+.+.|.+||..+.... ....... ++.........+...+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s 85 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG 85 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 45678999999995 6678999999988754322 2222322 3333333333455566778999999863
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=1.3e-06 Score=50.20 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=48.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceee-ec----------cceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAET-VN----------VAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~-~~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|+.++|.|........ .+.|++.. .... +. .........+....|.|.+++.+|+|.|.|
T Consensus 9 s~~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC 87 (106)
T d1lk3l1 9 ALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC 87 (106)
T ss_dssp EEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred eEEECCCCCEEEEEEeCCCCCc-cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence 4567799999999999765554 79999732 1111 00 011233344556789999999999999999
Q ss_pred EEec
Q psy10918 175 WGSN 178 (207)
Q Consensus 175 ~~~n 178 (207)
.+..
T Consensus 88 a~~~ 91 (106)
T d1lk3l1 88 QQSW 91 (106)
T ss_dssp EECS
T ss_pred cccc
Confidence 7653
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.40 E-value=4.5e-07 Score=52.67 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=48.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEe------cCCeEEEEecCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIM------TNQSLVLQRVNR 69 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~------~~~~l~i~~~~~ 69 (207)
+.+++....+.+|++++|.|........ .+.||+.. ..+. .....++.. ....|.|.+++.
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~ 81 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYP-ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE 81 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCC-EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCc-ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc
Confidence 4466677788999999999987654444 79999832 1110 000111111 123599999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|+|.|.|.+..
T Consensus 82 ~Dsa~YyCA~~~ 93 (110)
T d1ac6a_ 82 SDSAVYYCALSG 93 (110)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCCcccceeecC
Confidence 999999998763
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.40 E-value=2e-07 Score=54.28 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEECC--cccc----------ccccCCeE--e--cCCeEEEEecCCCCCeee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--KTLH----------HNIAQGII--M--TNQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~~~~----------~~~~~~~~--~--~~~~l~i~~~~~~d~g~Y 75 (207)
....+.+|++++|.|...+.. ....+.||+.. ..+. .....++. . ...+|.|.+++.+|+|.|
T Consensus 8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y 87 (111)
T d1rzfl1 8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (111)
T ss_dssp SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence 357788999999999875432 12269999732 1110 00011111 1 113599999999999999
Q ss_pred EEEEee
Q psy10918 76 TCVGFN 81 (207)
Q Consensus 76 ~C~~~~ 81 (207)
+|....
T Consensus 88 yCA~~~ 93 (111)
T d1rzfl1 88 YCGTWD 93 (111)
T ss_dssp EEEEEE
T ss_pred EEeecC
Confidence 998764
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.40 E-value=8.4e-07 Score=51.93 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=46.5
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC-----ceeee----c------------cceeEE--eecCceEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN-----SAETV----N------------VAQAHI--LRSGTLSVVAYSP 163 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~-----~~~~~----~------------~~~~~~--~~~~~~~~l~i~~ 163 (207)
....+.+|+.+.|.|...+......+.|++.. +.+.. . ..+... ........|.|.+
T Consensus 6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 85 (115)
T d2atpb1 6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMN 85 (115)
T ss_dssp SEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECS
T ss_pred CcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecc
Confidence 34457799999999998764433379999731 11100 0 001111 1223355799999
Q ss_pred CCCCCCeEEEEEEec
Q psy10918 164 NSELDYGTLICWGSN 178 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n 178 (207)
++.+|+|.|.|.+..
T Consensus 86 ~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 86 VKPEDSDFYFCATVG 100 (115)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCCCcEEEEeEcC
Confidence 999999999998864
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.40 E-value=3.3e-06 Score=49.28 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=48.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeecc------------ceeE--EeecCceEEEEEecCCCCCCe
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVNV------------AQAH--ILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~~------------~~~~--~~~~~~~~~l~i~~~~~~~~g 170 (207)
....+.+|+.++|.|..........+.|++.. +...... .+.. .........|.|.+++.+|+|
T Consensus 7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 86 (115)
T d1fo0a_ 7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSA 86 (115)
T ss_dssp CEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccc
Confidence 34457899999999987644333378899732 2111000 0111 222334567999999999999
Q ss_pred EEEEEEecCCC
Q psy10918 171 TLICWGSNKIG 181 (207)
Q Consensus 171 ~y~C~~~n~~g 181 (207)
.|.|.+....+
T Consensus 87 ~YyCa~~~~~~ 97 (115)
T d1fo0a_ 87 VYFCAMRGDYG 97 (115)
T ss_dssp EEEEEEECCCT
T ss_pred cccceeecCCC
Confidence 99999875443
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.39 E-value=5.8e-07 Score=52.47 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=47.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc-------------ccccCCeEe-----cCCeEEEEe
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH-------------HNIAQGIIM-----TNQSLVLQR 66 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~-----~~~~l~i~~ 66 (207)
.+.+.+....+.+|++++|.|..... .. .+.||+.. ..+. ......... ....|.|.+
T Consensus 2 ~V~QsP~~~~~~~G~~v~l~C~~~~~-~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 79 (113)
T d1j8he1 2 KVTQSSRYLVKRTGEKVFLECVQDMD-HE-NMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILES 79 (113)
T ss_dssp CEEESCSEEEEETTCCEEECEEESSC-CS-EEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESS
T ss_pred EEEccCCEEEECCCCCEEEEEEEcCC-cc-EEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEecc
Confidence 35566777788899999999986433 33 78899822 1110 000011111 123599999
Q ss_pred cCCCCCeeeEEEEee
Q psy10918 67 VNRQSAGNYTCVGFN 81 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~ 81 (207)
++.+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 80 ASTNQTSMYLCASSS 94 (113)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred CccCCcccEEeeEcc
Confidence 999999999998763
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=9e-07 Score=51.69 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=46.7
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eee----e-c-c-----------ceeEEeecCceEEEEEecCCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNS--AET----V-N-V-----------AQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~----~-~-~-----------~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
..+.+|+.++|.|..........+.|++... ... + . . .+...........|.|.+++.+|+
T Consensus 10 ~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Ds 89 (114)
T d1akjd_ 10 RTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENE 89 (114)
T ss_dssp CCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCC
Confidence 3467899999999987654333789998321 110 0 0 0 112233344456799999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
|.|.|.+..
T Consensus 90 g~YyCa~~~ 98 (114)
T d1akjd_ 90 GYYFCSALS 98 (114)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEeEcC
Confidence 999999874
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.9e-06 Score=48.41 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=42.2
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEee--cCce---EEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILR--SGTL---SVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.++.+.|.|.+.|. |.+ .+.|++++..+..... ..... ++.. +.|.+ ...+...|+|.+.+..-..
T Consensus 15 s~~~~~L~C~~~g~~P~~-~V~W~~n~~~~~~~~~-~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~ 86 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEP-HLSWLENGEELNAINT-TVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRV 86 (95)
T ss_dssp STTEEEEEEEEEEESSCE-EEEEEESSCEECCSEE-EEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCE
T ss_pred CCCEEEEEEEECcccCCC-EEEEecCCcEecccce-eeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCC
Confidence 45678999999985 666 9999998876542221 11222 2322 33444 3445679999999865544
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.39 E-value=4.5e-07 Score=52.86 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=45.9
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------------cc-ccCCeEe----cCCeEEEEecC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------------HN-IAQGIIM----TNQSLVLQRVN 68 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------------~~-~~~~~~~----~~~~l~i~~~~ 68 (207)
.+++....+.+|++++|.|..... .. .+.||+. +..+. .. ....... .+..|.|.+++
T Consensus 3 tQ~P~~~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (112)
T d2bnub1 3 TQTPKFQVLKTGQSMTLQCAQDMN-HE-YMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA 80 (112)
T ss_dssp EEECSEEEEETTCCEEEEEEESSC-CS-EEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred EECCCeEEECCCCCEEEEEEEECC-cc-ceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence 455666778899999999987543 33 7999982 21110 00 0011111 12359999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|+|.|.|...
T Consensus 81 ~~DsavYyCA~~ 92 (112)
T d2bnub1 81 PSQTSVYFCASS 92 (112)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEeec
Confidence 999999999875
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.39 E-value=5.6e-08 Score=55.05 Aligned_cols=69 Identities=14% Similarity=0.347 Sum_probs=44.0
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc------c----cccCCe--Ee--c--CCeEEEEecCCCCCeee
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH------H----NIAQGI--IM--T--NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~------~----~~~~~~--~~--~--~~~l~i~~~~~~d~g~Y 75 (207)
+..|.+|++++|.|..... . ..+.||+. +..+. . ....++ .. . ...|+|.+++.+|+|.|
T Consensus 2 slsV~eG~~vtL~C~~~~~-~-~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 79 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYKTS-I-NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY 79 (96)
T ss_dssp CCCCSSCCCCCBCCBCSSC-E-EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred CceECCCCCEEEEEEEeCC-c-ccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence 3567899999999987543 2 37999982 22111 0 000111 11 1 13599999999999999
Q ss_pred EEEEeeeCC
Q psy10918 76 TCVGFNIEG 84 (207)
Q Consensus 76 ~C~~~~~~~ 84 (207)
.|.+....+
T Consensus 80 yCA~~~~~g 88 (96)
T d1ymmd1 80 FCATDTTSG 88 (96)
T ss_dssp EEEEEETTS
T ss_pred eEeEecCCC
Confidence 998864433
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=1.2e-06 Score=49.68 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=41.6
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCe-EecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGI-IMTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..|+.++|.|.+.+. |....++|++||..+........ ...+++ .....+...+.+.|+|.+...
T Consensus 16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~ 85 (99)
T d1lk2b_ 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD 85 (99)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence 457889999999884 55568999999988765321111 112222 222233456677999999754
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.38 E-value=1.5e-06 Score=49.13 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=45.6
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
..++.++|.|.+.++ |..+.+.|.+||..+...... .....++.........+...+...|+|.+.+....
T Consensus 15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~ 88 (98)
T d1hdmb1 15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP 88 (98)
T ss_dssp SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence 345688999999996 667899999998765332211 22223444333333344556667899999986543
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.1e-06 Score=50.96 Aligned_cols=68 Identities=10% Similarity=0.249 Sum_probs=40.7
Q ss_pred cccCCCcEEEEeEeccCCC--CcEEE--EEECCccc-cc---------c--ccC--C--eEecCCeEEEEecCCCCCeee
Q psy10918 16 HIKEDSDVYFDCDIVAVPP--VYKVE--WRHNNKTL-HH---------N--IAQ--G--IIMTNQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~--~~~i~--W~~~~~~~-~~---------~--~~~--~--~~~~~~~l~i~~~~~~d~g~Y 75 (207)
.+..|++++|.|....... ...+. |.++.... .. . ... + ....+.+|.|.+++.+|+|.|
T Consensus 5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y 84 (110)
T d1ncna_ 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLY 84 (110)
T ss_dssp EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEE
T ss_pred EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEE
Confidence 3567999999998753221 11334 44433221 10 0 000 1 112345799999999999999
Q ss_pred EEEEeeeC
Q psy10918 76 TCVGFNIE 83 (207)
Q Consensus 76 ~C~~~~~~ 83 (207)
.|.+....
T Consensus 85 ~C~V~~~~ 92 (110)
T d1ncna_ 85 QCIIHHKK 92 (110)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 99997543
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.38 E-value=3.5e-06 Score=47.26 Aligned_cols=65 Identities=11% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcC--ceee----ecc------ce--eEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNN--SAET----VNV------AQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~----~~~------~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
|+.++|.|........ .+.|++.. .... ... .+ ...........|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQ-SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCC-cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 6789999998765555 89999732 1110 000 01 11223344567999999999999999998753
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.38 E-value=5.3e-06 Score=48.35 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=47.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeee----c-------cc--eeEEeecCceEEEEEecCCCCCCeE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETV----N-------VA--QAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~----~-------~~--~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
....+.+|+.++|.|...+. .. .+.|++. |..... . .. ............|.|.+++.+|+|.
T Consensus 8 ~~~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 85 (115)
T d1ogad1 8 QFLSIQEGENLTVYCNSSSV-FS-SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL 85 (115)
T ss_dssp SEEEEETTCCEEEEEECSSC-CS-CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred CeEEECCCCCEEEEEEECCC-Cc-eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence 34457799999999987654 33 7899973 221110 0 00 1122333446789999999999999
Q ss_pred EEEEEecC
Q psy10918 172 LICWGSNK 179 (207)
Q Consensus 172 y~C~~~n~ 179 (207)
|.|.+...
T Consensus 86 YyCa~~~~ 93 (115)
T d1ogad1 86 YLCAGAGS 93 (115)
T ss_dssp EEEEEECT
T ss_pred EcccccCC
Confidence 99988743
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.37 E-value=1.3e-06 Score=50.76 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=48.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------ccc-------cCCe---EecCCeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------HNI-------AQGI---IMTNQSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------~~~-------~~~~---~~~~~~l~i~~~~ 68 (207)
+.+.+....+.+|++++|.|........ .+.||+. |..+. ... ..++ ...+..|.|...+
T Consensus 4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~ 82 (112)
T d1fo0b_ 4 LEQNPRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN 82 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEESCTTCC-EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred EEeCCCeEEECCCCCEEEEEEEecCCCC-cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence 3456777788999999999997665544 7899984 22111 000 0011 1234569999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|.|...
T Consensus 83 ~~dsa~Y~Ca~~ 94 (112)
T d1fo0b_ 83 MSQGRTLYCTCS 94 (112)
T ss_dssp CCSCEEEEEEEE
T ss_pred ccCCccEEEEEe
Confidence 999999999864
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.37 E-value=2.5e-06 Score=49.55 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=49.3
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
+....+.+|++++|.|...+......+.|++. |+....- ..+.....+.....|.|.++..+|+|.|
T Consensus 5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y 84 (112)
T d1kgcd1 5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY 84 (112)
T ss_dssp CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence 33455779999999999875543326899983 2222110 0122333444566799999999999999
Q ss_pred EEEEecC
Q psy10918 173 ICWGSNK 179 (207)
Q Consensus 173 ~C~~~n~ 179 (207)
.|.+...
T Consensus 85 yCa~~~~ 91 (112)
T d1kgcd1 85 YCILPLA 91 (112)
T ss_dssp EEECCCC
T ss_pred eeeEecC
Confidence 9987653
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.37 E-value=1.9e-06 Score=49.50 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=49.0
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeee--c---------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETV--N---------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~--~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|....+.+|+.++|.|........ .+.|++.. +.... . ..+.....++....|.|.+++.+|+|.|
T Consensus 7 P~sl~~~~G~svtL~C~~~~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y 85 (106)
T d1op3k1 7 PSTLSASVGDTITITCRASQSIET-WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATY 85 (106)
T ss_dssp CSEEEECTTCEEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCC-cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcE
Confidence 334556799999999988765554 78999742 11110 0 0122333445567899999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+..
T Consensus 86 yCa~~~ 91 (106)
T d1op3k1 86 HCQHYA 91 (106)
T ss_dssp EEEEEC
T ss_pred eeeeCC
Confidence 998764
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.37 E-value=2.1e-06 Score=49.73 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=46.5
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc-----------c--eeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV-----------A--QAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~-----------~--~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
...+.+|+.++|.|........ .+.|++. +....... . .......+....|.|.++..+|+|.|
T Consensus 8 ~~~~~~G~~vtl~C~~~~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 86 (110)
T d1u3ha1 8 SLTVWEGETAILNCSYENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY 86 (110)
T ss_dssp SEEEETTSCEEEEEEECCTTEE-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEE
T ss_pred EEEEcCCCCEEEEEEecCCCCc-EEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeE
Confidence 3456799999999988754444 7999974 22211100 0 11122233456799999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+..
T Consensus 87 yCa~~~ 92 (110)
T d1u3ha1 87 FCAASA 92 (110)
T ss_dssp EECCEE
T ss_pred eeeecC
Confidence 999874
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.37 E-value=3.5e-06 Score=48.51 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=48.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceee-e-c---------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAET-V-N---------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~-~-~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|........ .+.|++.. .... + . .........+....|.|.++..+|+|.|.
T Consensus 9 ~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy 87 (108)
T d1jhll_ 9 SYLVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI 87 (108)
T ss_dssp SEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred CeEEecCCCCEEEEEEccCCcCC-ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence 33456789999999998765444 78999732 1110 0 0 01122334455678999999999999999
Q ss_pred EEEecC
Q psy10918 174 CWGSNK 179 (207)
Q Consensus 174 C~~~n~ 179 (207)
|.+.+.
T Consensus 88 CA~~~~ 93 (108)
T d1jhll_ 88 CQQHNE 93 (108)
T ss_dssp EEECSS
T ss_pred EeeCCC
Confidence 987653
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.36 E-value=1.8e-06 Score=49.66 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=48.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeee-c----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETV-N----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~-~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|........ .+.|++. +..... . ..+......+....|.|.+++.+|++.|.
T Consensus 9 ~~l~~~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy 87 (107)
T d1mexl1 9 KFMSTSLGNRVSVTCKASQNVGT-NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYF 87 (107)
T ss_dssp SEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCC-ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEE
Confidence 34456789999999987655554 7899973 221110 0 01223333445678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 88 Ca~~~ 92 (107)
T d1mexl1 88 CQQYN 92 (107)
T ss_dssp EEECS
T ss_pred EeECC
Confidence 98764
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.35 E-value=5.3e-07 Score=52.54 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=44.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc-------c---cccCCeEe--c--CCeEEEEecCCCCCeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH-------H---NIAQGIIM--T--NQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~-------~---~~~~~~~~--~--~~~l~i~~~~~~d~g~Y 75 (207)
+....+.+|++|+|.|...+......+.||+. +..+. . ....++.. + ...|+|.+++.+|+|.|
T Consensus 5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y 84 (112)
T d1kgcd1 5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY 84 (112)
T ss_dssp CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence 34566789999999998765443325899993 22211 0 00001111 1 12499999999999999
Q ss_pred EEEEee
Q psy10918 76 TCVGFN 81 (207)
Q Consensus 76 ~C~~~~ 81 (207)
.|.+..
T Consensus 85 yCa~~~ 90 (112)
T d1kgcd1 85 YCILPL 90 (112)
T ss_dssp EEECCC
T ss_pred eeeEec
Confidence 998753
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=5.1e-07 Score=52.74 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=41.9
Q ss_pred CcccCCCcEEEEeEecc--CCCCcEEEEEECC--cccc----cc---------ccCCeEe----cC--CeEEEEecCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVA--VPPVYKVEWRHNN--KTLH----HN---------IAQGIIM----TN--QSLVLQRVNRQS 71 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~--~~~~----~~---------~~~~~~~----~~--~~l~i~~~~~~d 71 (207)
..+.+|++++|.|...+ .... .+.|+|.. .... .. ...++.. .. .+|+|.+++.+|
T Consensus 9 ~~v~eG~svtl~C~~~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 9 YELKEGQTLDVKCDYTLEKFASS-QKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EECCTTCCEEEEEECCHHHHTTS-CEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEEccCCCEEEEEEeCCCCCCCC-EEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 55778999999998653 2333 68899832 1110 00 0001111 11 248899999999
Q ss_pred CeeeEEEEeee
Q psy10918 72 AGNYTCVGFNI 82 (207)
Q Consensus 72 ~g~Y~C~~~~~ 82 (207)
+|.|.|.+...
T Consensus 88 sg~Y~Cav~~~ 98 (113)
T d1smoa_ 88 SGLYQCVIYQP 98 (113)
T ss_dssp CEEEEEEECCT
T ss_pred CceEEEEEECC
Confidence 99999988643
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.35 E-value=3.2e-07 Score=53.53 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=46.6
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc-------c------cccCCeE-----ecCCeEEEEecC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH-------H------NIAQGII-----MTNQSLVLQRVN 68 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~-------~------~~~~~~~-----~~~~~l~i~~~~ 68 (207)
.+.+....+.+|++++|.|..... .. .+.||+.. ..+. . ....... .....|.|.+++
T Consensus 2 ~QsP~~~~~~~G~svtL~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 79 (112)
T d2cdeb1 2 YQTPRYLVIGTGKKITLECSQTMG-HD-KMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR 79 (112)
T ss_dssp EEECSEEEEETTCCBCCEEEETTC-CS-EEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred EECCCEEEECCCCCEEEEEEEeCC-cc-cEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence 355666778899999999987543 23 79999832 1110 0 0000111 112359999999
Q ss_pred CCCCeeeEEEEeee
Q psy10918 69 RQSAGNYTCVGFNI 82 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~ 82 (207)
.+|+|.|.|.+...
T Consensus 80 ~~Dsa~YyCA~~~~ 93 (112)
T d2cdeb1 80 PSHTSQYLCASSEN 93 (112)
T ss_dssp TTTCSEEEEEEECS
T ss_pred ccccccEEEEEecC
Confidence 99999999987643
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.35 E-value=1.6e-06 Score=50.02 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=48.6
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|....+.+|+.++|.|..........+.|++. ++....- ..+......+....|.|.+++.+|+|.|
T Consensus 8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y 87 (108)
T d2fx7l1 8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY 87 (108)
T ss_dssp SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence 34455778999999998765533337889974 2211110 0112233344567899999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+.+
T Consensus 88 yCa~~~ 93 (108)
T d2fx7l1 88 YCQQYG 93 (108)
T ss_dssp EEEECS
T ss_pred eeecCC
Confidence 998864
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=1.9e-06 Score=50.90 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=46.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceee-----e--cc--c------------e-eEEeecCceEEEEEecC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFN--NSAET-----V--NV--A------------Q-AHILRSGTLSVVAYSPN 164 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~-----~--~~--~------------~-~~~~~~~~~~~l~i~~~ 164 (207)
..+.+|+.++|.|...+.... .+.|++. ++.+. . .. . + ......+....|.|.++
T Consensus 11 ~~~~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~ 89 (122)
T d1nezg_ 11 MDAELGQKVDLVCEVLGSVSQ-GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKF 89 (122)
T ss_dssp EEECTTCCEEEEEEEESCCSS-CEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSC
T ss_pred EEECCCCCEEEEEEEcCccCC-CEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEccc
Confidence 456789999999998776665 8999872 22110 0 00 0 0 01122334567999999
Q ss_pred CCCCCeEEEEEEec
Q psy10918 165 SELDYGTLICWGSN 178 (207)
Q Consensus 165 ~~~~~g~y~C~~~n 178 (207)
+.+|+|.|.|.+..
T Consensus 90 ~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 90 SKENEGYYFCSVIS 103 (122)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccCCCEEEEeeEeC
Confidence 99999999998863
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.35 E-value=2.1e-06 Score=48.45 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=42.1
Q ss_pred ccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccC--CeEecCCeEE---EEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ--GIIMTNQSLV---LQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~l~---i~~~~~~d~g~Y~C~~~~~ 82 (207)
...++.++|.|.+.+. |....++|++||..+...... .....++++. ...+...+...|.|.+.+.
T Consensus 14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~ 85 (98)
T d1hdmb1 14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHI 85 (98)
T ss_dssp CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeC
Confidence 3457789999999884 655699999999887543211 1112222222 2234556667899999864
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.34 E-value=1.8e-06 Score=49.75 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=44.8
Q ss_pred eeeeCCcEEEEEEeccC-CCCceEEEEEcCceeeecccee-EEeecCceEEEEEecCCCCCC-eEEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQA-HILRSGTLSVVAYSPNSELDY-GTLICWGSNKIGHQ 183 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~n~~g~~ 183 (207)
....+..++|.|.+.++ |....+.|.++|.......... ....++..+......+..++. ..|+|.+.+.....
T Consensus 20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s~~~ 96 (107)
T d1hxmb2 20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNKN 96 (107)
T ss_dssp GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETTSGG
T ss_pred HHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECCCCC
Confidence 34456789999999985 6678999999887654322211 122334333222223333442 36999999876544
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.34 E-value=2.4e-06 Score=49.15 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=48.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeee-----------ccceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETV-----------NVAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~-----------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|........ .+.|++.. ..... ...+......+....|.|.+++.+|+|.|.
T Consensus 9 ~sl~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy 87 (107)
T d1tjgl1 9 SSLSASVGDRITITCRASQGVTS-ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY 87 (107)
T ss_dssp SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CEEEECCCCCEEEEEEECCCCCc-cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence 34456789999999998765444 88999732 21110 001222333455678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+.+
T Consensus 88 Ca~~~ 92 (107)
T d1tjgl1 88 CQQLH 92 (107)
T ss_dssp EEECS
T ss_pred EEECc
Confidence 97764
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=1.4e-06 Score=51.01 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=43.9
Q ss_pred cCCCcccCCCcEEEEeEecc-----CCCCcEEEEEECCcccc-------------ccccCCeEe------cCCeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVA-----VPPVYKVEWRHNNKTLH-------------HNIAQGIIM------TNQSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~-----~~~~~~i~W~~~~~~~~-------------~~~~~~~~~------~~~~l~i~~~ 67 (207)
+....+.+|++|.|.|.... ......+.|++...... .....+... ...+|.|.++
T Consensus 7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 86 (118)
T d1qfoa_ 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL 86 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence 45567889999999998742 11122566777432111 000111111 1235999999
Q ss_pred CCCCCeeeEEEEeee
Q psy10918 68 NRQSAGNYTCVGFNI 82 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~ 82 (207)
+..|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 87 KPEDSGTYNFRFEIS 101 (118)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred ChhHCEEEEEEEEeC
Confidence 999999999998643
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.34 E-value=2.7e-06 Score=48.11 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=41.6
Q ss_pred ccCCCcEEEEeEeccC-CCCcEEEEEECCccccccc--cCCeEecCCeEE---EEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLV---LQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~---i~~~~~~d~g~Y~C~~~~~ 82 (207)
+..|+..+|.|.+.+. |....++|.+||..+.... .......++++. ...+...+...|+|.+.+.
T Consensus 16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~ 87 (99)
T d1uvqa1 16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW 87 (99)
T ss_dssp CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 3457788999999884 6656899999998876421 111112222222 2233455667899999754
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.34 E-value=5.6e-06 Score=47.94 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=47.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc-----------ce--eEEeecCceEEEEEecCCCCCCeE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV-----------AQ--AHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~-----------~~--~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
....+.+|+.++|.|........ .+.|++. |+....-. .+ ...........|.|.++..+|+|.
T Consensus 8 ~s~~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 86 (111)
T d1bd2d1 8 PSLSVQEGRISILNCDYTNSMFD-YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAV 86 (111)
T ss_dssp SEEEEETTSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred CEEEEcCCCCEEEEEEeCCCCCC-eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEE
Confidence 33456799999999987765555 7889973 22211100 01 122233456789999999999999
Q ss_pred EEEEEec
Q psy10918 172 LICWGSN 178 (207)
Q Consensus 172 y~C~~~n 178 (207)
|.|.+..
T Consensus 87 YyCa~~~ 93 (111)
T d1bd2d1 87 YFCAAME 93 (111)
T ss_dssp EEEEEES
T ss_pred EEeeccC
Confidence 9998874
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=2.1e-06 Score=50.31 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=44.8
Q ss_pred eeeecCCCcccCCCcEEEEeEeccC--CCCcEEEEEECC--cccc------c-------cccCCe--Ee--cCCeEEEEe
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAV--PPVYKVEWRHNN--KTLH------H-------NIAQGI--IM--TNQSLVLQR 66 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~--~~~~------~-------~~~~~~--~~--~~~~l~i~~ 66 (207)
+.+ +....+.+|++++|.|..... .....+.||+.. +... . ...... .. ....|.|.+
T Consensus 3 VtQ-P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 81 (117)
T d1dqta_ 3 VTQ-PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQG 81 (117)
T ss_dssp EEC-CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECS
T ss_pred EEC-CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhc
Confidence 344 345667889999999997443 222247899832 2110 0 000010 11 123599999
Q ss_pred cCCCCCeeeEEEEee
Q psy10918 67 VNRQSAGNYTCVGFN 81 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~ 81 (207)
++.+|+|.|.|.+..
T Consensus 82 l~~~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 82 LRAVDTGLYLCKVEL 96 (117)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CccccCEeEEEEEec
Confidence 999999999998864
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3e-06 Score=47.62 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=45.9
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|.+++|.|........ .+.|+|+|...... . ...+....+.|.+++..|+|.|+|.....
T Consensus 15 ~V~~G~~VTL~C~~~~~~~~-~f~L~k~g~~~~~~----~-~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 15 VLMPGENISLTCSSAHIPFD-RFSLAKEGELSLPQ----H-QSGEHPANFSLGPVDLNVSGIYRCYGWYN 78 (96)
T ss_dssp EECTTCCCEEEEECSSSCCS-EEEEEETTCSSCCS----E-EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred ccCCCCeEEEEEeCCCCCce-EEEEEECCcccceE----E-cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence 46799999999986433433 89999988643221 1 12234456889999999999999987643
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1e-06 Score=50.57 Aligned_cols=71 Identities=20% Similarity=0.456 Sum_probs=44.1
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce-eEEeecCce---EEEEEecCCCC--CCeEEEEEEecCCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ-AHILRSGTL---SVVAYSPNSEL--DYGTLICWGSNKIGHQ 183 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~--~~g~y~C~~~n~~g~~ 183 (207)
....+.|.|.+.++ |.++.|.|.+++......... .....++.. +.|.+...++. ....|+|.|.+..+..
T Consensus 20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~ 97 (105)
T d1dn0b2 20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK 97 (105)
T ss_dssp -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence 45688999999995 567899999988765432211 123344442 34555444432 2247999999876543
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.31 E-value=1.9e-06 Score=50.34 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=47.2
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEE--eecCceEEEEEecCCCCCCeEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHI--LRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~--~~~~~~~~l~i~~~~~~~~g~y 172 (207)
...+.+|+.++|.|........ .+.|++. ++....- ..+... ........|.|.+++.+|+|.|
T Consensus 10 ~v~v~~G~~vtL~C~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y 88 (115)
T d1lp9e1 10 LVTLTEGLPVMLNCTYQSTYSP-FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALY 88 (115)
T ss_dssp EEEEETTSCEEECEEEECSSSC-CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEE
T ss_pred eEEECCCCCEEEEEEEeCCCcC-CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccc
Confidence 3456789999999998766555 8999974 2211110 001111 1122345699999999999999
Q ss_pred EEEEecCC
Q psy10918 173 ICWGSNKI 180 (207)
Q Consensus 173 ~C~~~n~~ 180 (207)
.|.+....
T Consensus 89 yCa~~~~~ 96 (115)
T d1lp9e1 89 YCALFLAS 96 (115)
T ss_dssp EEEEEECS
T ss_pred eEEEEcCC
Confidence 99887543
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=2.3e-06 Score=47.62 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecCCeEE---EEecCCCCCeeeEEEEeee
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLV---LQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~d~g~Y~C~~~~~ 82 (207)
+..++|.|.+.+ +|....++|.+||..+...........++++. ...+...+...|+|.+...
T Consensus 15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~ 81 (91)
T d3frua1 15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHE 81 (91)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeC
Confidence 457899999988 46666999999998775432111111222211 1122345667899998753
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.31 E-value=3.4e-06 Score=48.94 Aligned_cols=68 Identities=18% Similarity=0.366 Sum_probs=43.6
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEEC--Ccccc------cc-c--------cCCeEe--c--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHN--NKTLH------HN-I--------AQGIIM--T--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~--~~~~~------~~-~--------~~~~~~--~--~~--~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+.. ..+.+.|++. |+.+. .. . ..++.. + .. .|+|.+++
T Consensus 8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~ 87 (119)
T d1qnzh_ 8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT 87 (119)
T ss_dssp CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence 445778999999999987643 2236889882 22211 00 0 011111 1 12 39999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDsAvYYCA~~ 99 (119)
T d1qnzh_ 88 SDDSAVYYCAIH 99 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred ccceeEEEEEEe
Confidence 999999999754
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.31 E-value=9.4e-07 Score=49.69 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=39.7
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECC--ccc------cc---cccCCeEe----cC--CeEEEEecCCCCCeeeEEEEee
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNN--KTL------HH---NIAQGIIM----TN--QSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~--~~~------~~---~~~~~~~~----~~--~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
|++++|.|........ .+.||+.. ... .. ....++.. .. .+|.|.+++.+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQ-SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEEccccCC-cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 7899999998765555 79999832 110 00 00111111 11 2599999999999999998763
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.31 E-value=1.4e-06 Score=49.88 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=48.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|++++|.|........ .+.|++.. ...... ........+.....|.|.+++.+|+|.|.
T Consensus 6 ~sl~~~~G~svtl~C~~~~~~~~-~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 84 (103)
T d8faba1 6 PSVSVSPGQTARITCSANALPNQ-YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY 84 (103)
T ss_dssp SEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCC-CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence 34567799999999987654444 78999732 221100 01122334455678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 85 CA~~~ 89 (103)
T d8faba1 85 CQAWD 89 (103)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 98764
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.30 E-value=6.8e-07 Score=52.67 Aligned_cols=74 Identities=12% Similarity=0.262 Sum_probs=47.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC-CCcEEEEEEC--Ccccc----------ccccCCeE--e--cC--CeEEEEecC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHN--NKTLH----------HNIAQGII--M--TN--QSLVLQRVN 68 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~--~~~~~----------~~~~~~~~--~--~~--~~l~i~~~~ 68 (207)
+.+......+.+|++++|.|...+.. ....+.||+. |..+. .....++. . .. ..|.|.+++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence 34455667788999999999987543 2226899982 21111 00011111 1 11 359999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|+|.|.|....
T Consensus 84 ~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 84 ERDEGSYYCACDT 96 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccCCceeecCccc
Confidence 9999999998753
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.30 E-value=2.9e-06 Score=48.96 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=48.0
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceee--ec---------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAET--VN---------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~--~~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|........ .+.|++.. +... .. ..+......+....|.|.+++.+|+|.|.
T Consensus 9 ~~l~~~~G~svtL~C~~s~~~~~-~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy 87 (109)
T d1mqkl_ 9 VSLSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY 87 (109)
T ss_dssp SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CEEEECCCCCEEEEEEeCCCcCc-ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence 34456789999999998765554 79999832 2111 00 01122333455678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 88 CA~~~ 92 (109)
T d1mqkl_ 88 CQHHY 92 (109)
T ss_dssp EEECS
T ss_pred EeeeC
Confidence 98763
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.30 E-value=1.6e-06 Score=49.11 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=44.0
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..|+..+|.|.+.|+ |..+.+.|.+||..+...... .....++.........+...+...|+|.+....
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s 88 (99)
T d1uvqa1 17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWG 88 (99)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 356678999999996 556799999998865432211 122233443333333344556678999999854
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.30 E-value=2.3e-07 Score=53.66 Aligned_cols=67 Identities=15% Similarity=0.308 Sum_probs=43.3
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Ccccc----c------cccCCeE--e--cCCeEEEEecCCCCCeeeE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLH----H------NIAQGII--M--TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~----~------~~~~~~~--~--~~~~l~i~~~~~~d~g~Y~ 76 (207)
....+.+|++++|.|........ .+.||+. |..+. . ....++. . ....|.|.+++.+|+|.|.
T Consensus 7 ~s~~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy 85 (108)
T d1nfde1 7 SSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (108)
T ss_dssp SEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CeeEECCCCCEEEEEECCCCCCc-cEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence 45677899999999987544333 6889982 21110 0 0011111 1 1235999999999999999
Q ss_pred EEEe
Q psy10918 77 CVGF 80 (207)
Q Consensus 77 C~~~ 80 (207)
|.+.
T Consensus 86 CA~~ 89 (108)
T d1nfde1 86 CLSS 89 (108)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9876
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.3e-06 Score=49.16 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=47.3
Q ss_pred eeeeCCcEEEEEEeccCCC---CceEEEEEcCceeeecc-----------ceeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 110 GVARQEKVNISCEVDANPP---DVKFSWTFNNSAETVNV-----------AQAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
....|+.++|.|....... ...+.|.+++..+.... .+......+ ...|.|.+++.+|+|.|.|.
T Consensus 5 t~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g-~~sL~I~~v~~~D~G~Y~C~ 83 (105)
T d1dr9a1 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN-NLSIVILALRPSDEGTYECV 83 (105)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT-TTEEEECSCCGGGCEEEEEE
T ss_pred EEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCC-cEEEEECcCChHHCeEEEEE
Confidence 4568999999997654322 23678887664431111 111222222 34699999999999999999
Q ss_pred EecCCCCC
Q psy10918 176 GSNKIGHQ 183 (207)
Q Consensus 176 ~~n~~g~~ 183 (207)
+.+..+..
T Consensus 84 V~~~~~~~ 91 (105)
T d1dr9a1 84 VLKYEKDA 91 (105)
T ss_dssp EEECCTTS
T ss_pred EEeCCCCC
Confidence 98765433
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.30 E-value=3.8e-06 Score=48.50 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=48.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|...+.... .+.|++.. +....- ..+......+....|.|.+++.+|+|.|.
T Consensus 11 ~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy 89 (109)
T d1bwwa_ 11 SSLSASVGDRVTITCQASQDIIK-YLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY 89 (109)
T ss_dssp SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CEEEECCCCCEEEEEEecCCCCC-cceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence 34456789999999998765554 78899732 111100 01122333455678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 90 CA~~~ 94 (109)
T d1bwwa_ 90 CQQYQ 94 (109)
T ss_dssp EEECS
T ss_pred EeecC
Confidence 98764
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4.5e-06 Score=46.77 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=41.4
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeE-ecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGII-MTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.|+.++|.|.+.+ +|....++|.+||..+......... ..+++ .....+...+...|+|.+...
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~ 82 (94)
T d1t7va1 14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS 82 (94)
T ss_dssp TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence 4778999999988 4665689999999877542211111 11222 233344566777899999864
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=98.28 E-value=2.5e-06 Score=48.46 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=40.3
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCccccccccC--CeEecCCeE---EEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ--GIIMTNQSL---VLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~l---~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..|+..+|.|.+.+. |....++|++||..+...... .....++++ ....+...+...|+|.+.+.
T Consensus 17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~ 87 (101)
T d1fnga1 17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHW 87 (101)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEEC
Confidence 457788999999884 656699999999887642111 111112221 11123345566899999754
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=98.28 E-value=2.9e-06 Score=48.15 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=42.5
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|+..+|.|.+.++ |..+.+.|.+||..+...... .....++.........+...+...|+|.+....
T Consensus 18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s 88 (101)
T d1fnga1 18 LGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWG 88 (101)
T ss_dssp TTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECC
Confidence 46678899999997 556799999998765432211 122223333222222334455568999999864
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.28 E-value=4.2e-06 Score=48.12 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=48.0
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|+.++|.|........ .+.|++. +...... ..+......+....|.|.+++.+|+|.|.|
T Consensus 10 sl~~~~G~svtl~C~~s~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyC 88 (107)
T d1d5il1 10 SMYASLGERVTITCKASQDINS-YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYC 88 (107)
T ss_dssp EEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCCC-ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEe
Confidence 3456789999999988765554 7889973 2211100 012223344556789999999999999999
Q ss_pred EEecC
Q psy10918 175 WGSNK 179 (207)
Q Consensus 175 ~~~n~ 179 (207)
.+...
T Consensus 89 a~~~~ 93 (107)
T d1d5il1 89 LQYDE 93 (107)
T ss_dssp EECSS
T ss_pred eeccC
Confidence 87653
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.28 E-value=9.1e-07 Score=51.59 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=45.9
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc------c------c-ccCCe---Eec--CCeEEEEecC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH------H------N-IAQGI---IMT--NQSLVLQRVN 68 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~------~------~-~~~~~---~~~--~~~l~i~~~~ 68 (207)
.+.+....+.+|++++|.|..... .. .+.||+.. ..+. . . ...++ ... ...|+|.+++
T Consensus 5 tQ~P~~~~~~~G~~v~l~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (113)
T d1nfdb1 5 VQSPRHIIKEKGGRSVLTCIPISG-HS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE 82 (113)
T ss_dssp EEECSEEEEETTCCCEEEEECCTT-CC-EEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred EEcCCEEEEeCCCCEEEEEEeCCC-CC-EEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence 466777788999999999986543 23 79999832 1110 0 0 00111 111 2358999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|+|.|.|.+.
T Consensus 83 ~~Dsa~YyCa~~ 94 (113)
T d1nfdb1 83 LEDSAMYFCASS 94 (113)
T ss_dssp GGGCEEECEEEE
T ss_pred cCCceeEEEEee
Confidence 999999999865
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2e-06 Score=48.31 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=45.1
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeecccee-EEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQA-HILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.|..++|.|.+.|+ |..+.+.|.+||.......... ....++.........+...+...|+|.+....-
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl 84 (94)
T d1t7va1 14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSL 84 (94)
T ss_dssp TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTC
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCC
Confidence 46789999999995 5568999999987654222211 122233333444445566677789999998643
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.27 E-value=1.7e-05 Score=46.35 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=47.8
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec----------------cceeEEe-ecCceEEEEEecCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN----------------VAQAHIL-RSGTLSVVAYSPNSELD 168 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~----------------~~~~~~~-~~~~~~~l~i~~~~~~~ 168 (207)
...+.+|+.++|.|...+.... .+.|++. |+.+..- ....... .......|.|.+++.+|
T Consensus 10 ~~~~~~G~~v~L~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D 88 (118)
T d2ij0c1 10 MVIVKSGTSVKIECRSLDTNIH-TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPED 88 (118)
T ss_dssp EEEECTTCCEEEEEEECSSCCS-EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGG
T ss_pred eEEEcCCCCEEEEEEEcCCccc-EEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccccc
Confidence 3456789999999998765555 8999983 2221110 0011122 22335679999999999
Q ss_pred CeEEEEEEecCC
Q psy10918 169 YGTLICWGSNKI 180 (207)
Q Consensus 169 ~g~y~C~~~n~~ 180 (207)
+|.|.|.+....
T Consensus 89 sa~YyCa~~~~~ 100 (118)
T d2ij0c1 89 SGFYVCSALAGS 100 (118)
T ss_dssp CEEEEEEEECSS
T ss_pred CceEEEEEecCC
Confidence 999999987543
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=8.9e-07 Score=50.77 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=45.1
Q ss_pred eCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeE-EeecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAH-ILRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..+.|.|.+.+ +|..+.+.|+++|........... ...++. .+.|.+..-.+.....|+|.|.+..
T Consensus 20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (104)
T d1o0va1 20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG 92 (104)
T ss_dssp CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence 3457889999998 566779999999887553332222 223332 3456665555555677999999864
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4.9e-06 Score=46.52 Aligned_cols=63 Identities=13% Similarity=0.271 Sum_probs=40.8
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccccC--CeE-ecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ--GII-MTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~--~~~-~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
++.++|.|.+.+ +|....++|++||..+...... ... ..+++ .....+...+...|+|.+.+.
T Consensus 15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~ 84 (94)
T d1de4a1 15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP 84 (94)
T ss_dssp SSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred CCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence 556899999988 4666699999999887542211 111 11222 233344566778899999864
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.25 E-value=3.7e-06 Score=47.39 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=44.2
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.++..+|.|.+.++ |..+.+.|.++|......... .....++..+......+...+...|+|.+....-
T Consensus 15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl 86 (97)
T d1uvqb1 15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL 86 (97)
T ss_dssp ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTC
T ss_pred CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCC
Confidence 45667899999986 556899999998764322211 2233344555455556677788899999998643
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=98.25 E-value=2e-06 Score=48.60 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=39.2
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccC--CeEecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ--GIIMTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++..+|.|.+.+ +|....++|++||..+...... .....+++ .....+...+...|+|.+.+.
T Consensus 17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~ 86 (98)
T d1d5mb1 17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHP 86 (98)
T ss_dssp ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECT
T ss_pred cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEEC
Confidence 4667789999987 4555689999999887543111 11122222 233355667788999999864
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.25 E-value=6.3e-06 Score=47.12 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=46.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+.+|+.++|.|..... .. .+.|++.. ...... .........+....|.|.+++.+|+|.|.
T Consensus 8 ~~l~~~~G~~vtl~C~~s~~-~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy 85 (104)
T d1yqvl1 8 AIMSASPGEKVTMTCSASSS-VN-YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYY 85 (104)
T ss_dssp SEEEECTTCCEEEEEEESSC-CS-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CeEEECCCCCEEEEEEeCCC-CC-ccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEE
Confidence 34456789999999987543 33 67899742 111100 01122333455678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 86 Ca~~~ 90 (104)
T d1yqvl1 86 CQQWG 90 (104)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 97754
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.25 E-value=5.4e-06 Score=48.20 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=46.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc---ce--------eE-EeecCceEEEEEecCCCCCCeEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV---AQ--------AH-ILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~---~~--------~~-~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
....+.+|+.++|.|..... .. .+.|++. ++....-. .. .. .......+.|.|.+++.+|+|.|
T Consensus 9 ~~~~v~~G~~vtl~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 86 (113)
T d1h5ba_ 9 SALSLHEGTDSALRCNFTTT-MR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY 86 (113)
T ss_dssp SEEEEETTCCEEEEEEESSC-CS-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred CEEEEcCCCCEEEEEEEecC-Cc-cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence 34456799999999998753 33 7899983 22211100 00 00 11122355799999999999999
Q ss_pred EEEEecCCC
Q psy10918 173 ICWGSNKIG 181 (207)
Q Consensus 173 ~C~~~n~~g 181 (207)
.|.+....+
T Consensus 87 yCa~~~~~~ 95 (113)
T d1h5ba_ 87 FCAAEASSG 95 (113)
T ss_dssp EEEEECSSS
T ss_pred EEEecCCCC
Confidence 999875443
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.23 E-value=1.9e-06 Score=50.37 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=46.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc------------c--eeEEeecCceEEEEEecCCCCCCeE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV------------A--QAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~------------~--~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
...+.+|++++|.|.......+ .+.|++. ++....-. . .......+....|.|.+++.+|+|.
T Consensus 9 ~v~v~~G~svtl~C~~~~~~~~-~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~ 87 (115)
T d1i9ea_ 9 RVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAV 87 (115)
T ss_dssp EEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEE
T ss_pred eEEECCCCCEEEEEEEcCCCCC-CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccce
Confidence 3457899999999998765554 7889872 22111000 0 1112223344579999999999999
Q ss_pred EEEEEec
Q psy10918 172 LICWGSN 178 (207)
Q Consensus 172 y~C~~~n 178 (207)
|.|.+..
T Consensus 88 YyCa~~~ 94 (115)
T d1i9ea_ 88 YFCAVSG 94 (115)
T ss_dssp EEEEEEE
T ss_pred ecccccC
Confidence 9998764
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.23 E-value=5.9e-06 Score=47.99 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=48.3
Q ss_pred eeeeeeCCcEEEEEEeccCC-CCceEEEEEcCc--eeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 108 VLGVARQEKVNISCEVDANP-PDVKFSWTFNNS--AETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~--~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
...+.+|+.++|.|...+.. ....+.|++... ....- ..+.....+.....|.|.+++.+|++.|.
T Consensus 9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy 88 (114)
T d2rhea_ 9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY 88 (114)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence 45677899999999987643 223789997421 11100 01223334455678999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 89 CA~~~ 93 (114)
T d2rhea_ 89 CAAWN 93 (114)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 99874
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.23 E-value=8.1e-06 Score=47.33 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=49.4
Q ss_pred CceeeeeeCCcEEEEEEeccCCC--CceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCe
Q psy10918 106 QRVLGVARQEKVNISCEVDANPP--DVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
|....+.+|++++|.|...+... ...+.|++.. ...... ..............|.|.+++.+|+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 86 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA 86 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence 44556789999999998775422 1258999732 211100 01122334455678999999999999
Q ss_pred EEEEEEecCC
Q psy10918 171 TLICWGSNKI 180 (207)
Q Consensus 171 ~y~C~~~n~~ 180 (207)
.|.|.+.+..
T Consensus 87 ~YyCa~~~~~ 96 (112)
T d1lgva1 87 DYYCSSYDGS 96 (112)
T ss_dssp EEEEEEECSS
T ss_pred EEEEeeecCC
Confidence 9999887533
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=9.9e-07 Score=50.65 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=45.7
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce---eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ---AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.++.++|.|.+.+. |....+.|+++|..+...... .....++. .+.|.+..-.+.....|+|.+.+.....
T Consensus 18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~ 95 (105)
T d1fp5a2 18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP 95 (105)
T ss_dssp SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence 35678999999985 556799999998764322111 12223333 3456665555556678999999865433
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.22 E-value=2.1e-06 Score=49.45 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeecc-----------ceeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVNV-----------AQAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
..+.+|+.++|.|........ .+.|++.. +....-. .+......+....|.|.+++.+|+|.|.|.
T Consensus 11 ~~~~~G~~vtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa 89 (107)
T d3cx5k1 11 LAASLGDRVTISCRASQDINN-FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ 89 (107)
T ss_dssp CCBCSSSCCEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred EEECCCCCEEEEEEcCCCcCC-CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence 346789999999987765554 78999732 2211100 011122234466899999999999999998
Q ss_pred Eec
Q psy10918 176 GSN 178 (207)
Q Consensus 176 ~~n 178 (207)
+..
T Consensus 90 ~~~ 92 (107)
T d3cx5k1 90 HHI 92 (107)
T ss_dssp ECS
T ss_pred eCC
Confidence 753
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.21 E-value=3e-06 Score=50.02 Aligned_cols=75 Identities=12% Similarity=0.307 Sum_probs=46.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC-CCcEEEEEEC--Ccccc-------------cc--ccCCeEec----C--CeEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHN--NKTLH-------------HN--IAQGIIMT----N--QSLV 63 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~--~~~~~-------------~~--~~~~~~~~----~--~~l~ 63 (207)
+.++..+....+|++++|.|.+.+.. ....+.||+. ++.+. .. ...++... . ..|.
T Consensus 4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~ 83 (123)
T d1hxmb1 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (123)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence 34444556677899999999987642 2236899983 21111 00 01122111 1 2499
Q ss_pred EEecCCCCCeeeEEEEeee
Q psy10918 64 LQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~ 82 (207)
|.+++.+|+|.|+|.....
T Consensus 84 i~~l~~~Dsa~YyCA~~~~ 102 (123)
T d1hxmb1 84 IHNVEKQDIATYYCALWEA 102 (123)
T ss_dssp ECSCCGGGCEEEEEEEEEE
T ss_pred ccccccccCcEEEEeeeCC
Confidence 9999999999999987644
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.21 E-value=8.5e-06 Score=46.05 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=43.5
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.+..|.+++|.|..... . ..+.|+|+|........ .....+....+.|..+...|+|.|+|.-..
T Consensus 16 ~V~~G~~VTL~C~~~~~-~-~~f~L~k~g~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~ 80 (99)
T d1nkra2 16 TVLAGENVTLSCSSRSS-Y-DMYHLSREGEAHERRLP--AGPKVNGTFQADFPLGPATHGGTYRCFGSF 80 (99)
T ss_dssp EECTTCEEEEEEEESSC-C-SEEEEEETTCSSCEEEE--CEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred cccCCCeEEEEECCCCC-c-cEEEEEECCCccccEEE--ccccCCccEEEEEeccccccCEEEEEEeec
Confidence 46789999999987643 3 38999998865332211 112233344466777778899999997653
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=3.5e-06 Score=49.36 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=46.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeee-c-c---------ceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETV-N-V---------AQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~-~-~---------~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
....+..|+.++|.|........ .+.|++.. ..... . . ........+....|.|.+++.+|+|.|.
T Consensus 9 ~sv~~~~G~svtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy 87 (119)
T d1f3rb2 9 SLLSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF 87 (119)
T ss_dssp SEECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred CEEEECCCCCEEEEEEeCCCCcc-eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence 34456789999999987764444 78999742 11110 0 0 1112223344567999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 88 Ca~~~ 92 (119)
T d1f3rb2 88 CYQYN 92 (119)
T ss_dssp EEEES
T ss_pred eeccC
Confidence 98775
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.20 E-value=8e-06 Score=47.25 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.6
Q ss_pred ceeeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 107 RVLGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
....+.+|+.++|.|...+.. ....+.|++. ++....- ..+.....++....|.|.+++.+|+|.|
T Consensus 8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y 87 (111)
T d1rzfl1 8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (111)
T ss_dssp SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence 345678999999999876543 2236999973 2111100 1122334455667899999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+..
T Consensus 88 yCA~~~ 93 (111)
T d1rzfl1 88 YCGTWD 93 (111)
T ss_dssp EEEEEE
T ss_pred EEeecC
Confidence 998874
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.20 E-value=9e-06 Score=46.22 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=46.8
Q ss_pred CCceeeeeeeecCCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC-eEecCCeEEEE---ecCCCCCeee
Q psy10918 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQ---RVNRQSAGNY 75 (207)
Q Consensus 1 ~p~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~---~~~~~d~g~Y 75 (207)
+|.+.+... . .+..|+..+|.|.+.+ +|....+.|.+||..+....... ....++++.+. .+...|...|
T Consensus 4 ~P~v~v~~~---~--p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~y 78 (103)
T d1hdma1 4 FPIAEVFTL---K--PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIF 78 (103)
T ss_dssp CCEEEEEES---S--CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCE
T ss_pred CCeEEEECC---C--chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEE
Confidence 466665421 2 2345888899999988 46666899999998765422111 11223332222 2345566789
Q ss_pred EEEEeee
Q psy10918 76 TCVGFNI 82 (207)
Q Consensus 76 ~C~~~~~ 82 (207)
+|.+...
T Consensus 79 tC~V~H~ 85 (103)
T d1hdma1 79 SCIVTHE 85 (103)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 9999864
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.20 E-value=4.2e-06 Score=48.21 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.2
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|++++|.|........ .+.|++.. +....- .........+....|.|.+++.+|+|.|.|
T Consensus 9 sl~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC 87 (109)
T d1w72l1 9 SVSVAPGQTARITCGGNNIGSR-SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC 87 (109)
T ss_dssp EEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred eEEECCCCCEEEEEEcCCCCCc-ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence 4567789999999987644444 78999732 221100 112233444556789999999999999999
Q ss_pred EEecC
Q psy10918 175 WGSNK 179 (207)
Q Consensus 175 ~~~n~ 179 (207)
.+...
T Consensus 88 A~~~~ 92 (109)
T d1w72l1 88 QVWDS 92 (109)
T ss_dssp EEEET
T ss_pred EecCC
Confidence 98753
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.20 E-value=1.3e-05 Score=46.37 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=46.4
Q ss_pred eeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceee-e--cccee--EEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 109 LGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAET-V--NVAQA--HILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~-~--~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.....|+.++|.|...+.. ....+.|++. |+... . ...+. ..........|.|.+++.+|+|.|.|.+....
T Consensus 9 ~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~ 88 (112)
T d1sq2n_ 9 VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG 88 (112)
T ss_dssp EEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred EEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence 4456899999999886532 2238899973 22111 1 11111 12222345679999999999999999987543
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=1.4e-06 Score=50.27 Aligned_cols=67 Identities=12% Similarity=0.282 Sum_probs=42.6
Q ss_pred CcccCCCcEEEEeEeccC--CCCcEEEEEEC--Ccc----ccccc---------cCCeEe--c--C--CeEEEEecCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAV--PPVYKVEWRHN--NKT----LHHNI---------AQGIIM--T--N--QSLVLQRVNRQS 71 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~--~~~----~~~~~---------~~~~~~--~--~--~~l~i~~~~~~d 71 (207)
..+.+|++++|.|...+. ... .+.|++. ++. +.... ..++.. + . .+|+|.+++.+|
T Consensus 5 ~~~~eG~svtl~C~ys~~~~~~~-~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD 83 (110)
T d1u9ka_ 5 YDLVEGQTLTVKCPFNIMKYANS-QKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD 83 (110)
T ss_dssp EEECTTCCEEEEEECCHHHHTTS-EEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred CcCCCCCCEEEEEEECCCCccCC-cEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence 457899999999998652 333 7889983 221 11100 001111 1 1 238888999999
Q ss_pred CeeeEEEEeee
Q psy10918 72 AGNYTCVGFNI 82 (207)
Q Consensus 72 ~g~Y~C~~~~~ 82 (207)
+|.|.|.....
T Consensus 84 sa~YyCa~~~~ 94 (110)
T d1u9ka_ 84 SGLYRCVIYHP 94 (110)
T ss_dssp CEEEEEEEECT
T ss_pred CEEEEEEEeCC
Confidence 99999998643
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=3.6e-06 Score=46.64 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=41.0
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCce---EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGTL---SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..+.|.|.+.++ |..+.+.|.++|..+...... .....++.. +.|.+. ..+...|+|.+....
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQG 84 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECC
Confidence 34679999999996 556799999998765433211 222333332 334443 334457999998753
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.19 E-value=7.3e-06 Score=47.79 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=46.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeee----cc--------ceeEE--eecCceEEEEEecCCCCCCe
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETV----NV--------AQAHI--LRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~----~~--------~~~~~--~~~~~~~~l~i~~~~~~~~g 170 (207)
....+.+|+.++|.|........ .+.|++. ++.... .. ..... ........|.|.++..+|+|
T Consensus 8 ~~v~~~~G~~vtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 86 (115)
T d1j8hd1 8 SHVSVSEGALVLLRCNYSSSVPP-YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA 86 (115)
T ss_dssp SEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred CeEEEcCCCCEEEEEEeCCCCce-eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence 34557899999999988755444 7999973 221110 00 01111 11223446999999999999
Q ss_pred EEEEEEecC
Q psy10918 171 TLICWGSNK 179 (207)
Q Consensus 171 ~y~C~~~n~ 179 (207)
.|.|.+...
T Consensus 87 ~YyCa~~~~ 95 (115)
T d1j8hd1 87 EYFCAVSES 95 (115)
T ss_dssp EEEEEEESS
T ss_pred cceeeecCC
Confidence 999999764
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=2.2e-06 Score=49.18 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=41.3
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc---CCeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA---QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~---~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..++.++|.|.+.+ +|....+.|++||..+..... ......++ .|.|..-.......|+|.+.+.
T Consensus 17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~ 91 (105)
T d1fp5a2 17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHE 91 (105)
T ss_dssp SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECT
T ss_pred hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEEC
Confidence 45678999999977 455569999999987754211 11111222 3555444334566899999864
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.19 E-value=9.8e-06 Score=47.02 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=46.7
Q ss_pred eeeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceee---eccceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 108 VLGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAET---VNVAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~---~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.....+|+.++|.|...+.. ....+.|++. +.... ....+.... .......|.|.+++.+|+|.|.|.+...
T Consensus 9 s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~ 88 (113)
T d1vesa_ 9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYS 88 (113)
T ss_dssp EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeecc
Confidence 34567899999999886542 2237999973 22111 111122222 2234567999999999999999999754
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.7e-06 Score=50.00 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=43.6
Q ss_pred CCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC------------CeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 14 PDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ------------GIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~------------~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
..++..++.++|.|.+.+ +|....|.|++||..+...... ......+.|.|..-.......|+|.+.
T Consensus 14 ~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~ 93 (108)
T d1ow0a2 14 SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVG 93 (108)
T ss_dssp TTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEE
T ss_pred HHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEE
Confidence 334567888999999977 4555589999999877642110 001111235555444344679999997
Q ss_pred ee
Q psy10918 81 NI 82 (207)
Q Consensus 81 ~~ 82 (207)
+.
T Consensus 94 H~ 95 (108)
T d1ow0a2 94 HE 95 (108)
T ss_dssp CT
T ss_pred eC
Confidence 54
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.18 E-value=4.6e-06 Score=47.46 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=42.6
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeE-EeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAH-ILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..|+..+|.|.+.++ |..+.+.|.+||........... ...++.........+..++...|+|.+....
T Consensus 16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~ 86 (103)
T d1hdma1 16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP 86 (103)
T ss_dssp CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence 356777999999996 56789999999876432222212 2233332222222334455667999999863
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.18 E-value=6.8e-06 Score=47.97 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=47.0
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc--------------ceeEEe--ecCceEEEEEecCCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV--------------AQAHIL--RSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~--------------~~~~~~--~~~~~~~l~i~~~~~~~~ 169 (207)
...+.+|+.++|.|..........+.|++. ++....-. .+.... .......|.|.+++.+|+
T Consensus 9 ~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds 88 (116)
T d1tvda_ 9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS 88 (116)
T ss_dssp CEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred CEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccc
Confidence 345779999999998765433338899872 22211100 011111 122345799999999999
Q ss_pred eEEEEEEecCCC
Q psy10918 170 GTLICWGSNKIG 181 (207)
Q Consensus 170 g~y~C~~~n~~g 181 (207)
|.|.|.+....+
T Consensus 89 g~YyCa~~~~~~ 100 (116)
T d1tvda_ 89 ATYYCAFTLPPP 100 (116)
T ss_dssp EEEEEEEECTTT
T ss_pred ccceeeEecCCC
Confidence 999999876443
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.18 E-value=1.2e-06 Score=51.62 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=44.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCC-CCcEEEEEECC--cccc------c--------cccCCeE--ec--C--CeEEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNN--KTLH------H--------NIAQGII--MT--N--QSLVL 64 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~~--~~~~------~--------~~~~~~~--~~--~--~~l~i 64 (207)
+.+++......+|++++|.|.+.+.. ....+.||+.. ..+. . ....++. .+ + ..|.|
T Consensus 4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I 83 (120)
T d1ypzf1 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (120)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence 34555556667899999999875432 12268999832 1110 0 0011111 11 1 24999
Q ss_pred EecCCCCCeeeEEEEe
Q psy10918 65 QRVNRQSAGNYTCVGF 80 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~ 80 (207)
.+++.+|+|.|.|...
T Consensus 84 ~~l~~~Dsa~YyCA~~ 99 (120)
T d1ypzf1 84 YSLEEEDEAIYYCSYG 99 (120)
T ss_dssp CSCCGGGCSEEEEEEC
T ss_pred cccccccceeEEEEEc
Confidence 9999999999999875
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.5e-06 Score=46.62 Aligned_cols=60 Identities=22% Similarity=0.461 Sum_probs=43.4
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCcccccccc-CCeEecCCeEEEEecCC-CCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-QGIIMTNQSLVLQRVNR-QSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~ 80 (207)
..|.+|+|+|... ... .|.|.+++..+..... .........|.+.+... +++|.|.|.+.
T Consensus 8 ISGTtV~LTCP~~--~~~-~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~ 69 (91)
T d1xiwa_ 8 ISGTTVILTCPQY--PGS-EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 69 (91)
T ss_dssp EETTEEEEECSSC--TTS-CEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEET
T ss_pred EeCCEEEEECCCC--CCC-ceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcC
Confidence 4589999999743 333 7999999987775432 23344456788877765 78999999875
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=98.16 E-value=6.1e-06 Score=46.36 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCe-EecCCe------EEEEecCCCCCeeeEEEEeeeC
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGI-IMTNQS------LVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~------l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.++.++|.|.+.+ +|....++|++++..+........ ...+++ |.+. ..|...|+|.+.+..
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s 84 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS 84 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence 3557999999988 466668999999877654321111 112222 4443 345668999998643
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=1.7e-06 Score=46.07 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCcccCCCcEEEEeEeccC-CCCcEEEEEECC-ccccc--cccCCeE--ec--C---CeEEEEecCCCCCeeeEEEEeee
Q psy10918 14 PDHIKEDSDVYFDCDIVAV-PPVYKVEWRHNN-KTLHH--NIAQGII--MT--N---QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~-~~~~~--~~~~~~~--~~--~---~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
...+..|+.+.|.|.+..- ..| +++|-|-+ +.-.. ...+... .. + -.|.+..+...|.|.|+|.+...
T Consensus 12 ~hs~~~G~~f~leCPVkYC~~RP-nVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVKYCVHRP-NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEEECTTSCEEEEEEEECSSSCC-CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred eeeEecCCceEecCcchhhcCCC-CcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 3456789999999999652 334 89998843 22111 1111111 11 1 13777888999999999999866
Q ss_pred CCCCccceEEEEE
Q psy10918 83 EGDGESNAFFLNV 95 (207)
Q Consensus 83 ~~~~~~~~~~l~v 95 (207)
.+...+.++.+.|
T Consensus 91 s~vieSHSvti~V 103 (104)
T d1xaua_ 91 SQVINSHSVTIHV 103 (104)
T ss_dssp TEEEECCCEEEEE
T ss_pred hhheecceEEEEe
Confidence 6555565655544
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.3e-06 Score=48.29 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=43.5
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECCc--ccc-------ccc-----cCC---eE--ecCCeEEEEecCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNK--TLH-------HNI-----AQG---II--MTNQSLVLQRVNRQ 70 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~--~~~-------~~~-----~~~---~~--~~~~~l~i~~~~~~ 70 (207)
+....+.+|+.++|.|...... ....+.|||... ... ... ... .. .....|.|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 3455677899999999975432 223588998431 110 000 000 00 11135999999999
Q ss_pred CCeeeEEEEee
Q psy10918 71 SAGNYTCVGFN 81 (207)
Q Consensus 71 d~g~Y~C~~~~ 81 (207)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998764
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.6e-06 Score=49.44 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+..++|.|.+.+. |..+.|.|.++|..+...... .....++. .+.|.+..-.+.....|+|.|.+..
T Consensus 20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG 92 (102)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 4568999999986 556799999998765432211 11222343 3456666556566789999999754
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.15 E-value=1.3e-05 Score=46.14 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=47.3
Q ss_pred eeeeeCCcEEEEEEeccCCC--CceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCCeEEE
Q psy10918 109 LGVARQEKVNISCEVDANPP--DVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 173 (207)
..+.+|+.++|.|...+... ...+.|++. |+....- ..+......+....|.|.+++.+|+|.|.
T Consensus 10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Yy 89 (110)
T d1oaql_ 10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF 89 (110)
T ss_dssp EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEE
Confidence 45678999999999875332 224889972 2222110 11223334456778999999999999999
Q ss_pred EEEec
Q psy10918 174 CWGSN 178 (207)
Q Consensus 174 C~~~n 178 (207)
|.+..
T Consensus 90 Ca~~~ 94 (110)
T d1oaql_ 90 CALWY 94 (110)
T ss_dssp EEEEE
T ss_pred EEccc
Confidence 99875
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.15 E-value=1.2e-05 Score=46.75 Aligned_cols=68 Identities=19% Similarity=0.384 Sum_probs=43.0
Q ss_pred CCCcccCCCcEEEEeEeccCCC---CcEEEEEEC--Ccccc------cc--------ccCCeEec----C--CeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHN--NKTLH------HN--------IAQGIIMT----N--QSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~--~~~~~------~~--------~~~~~~~~----~--~~l~i~~~ 67 (207)
....+.+|++|+|.|.+.+... .+.+.|||. ++.+. .. ...++... + ..|+|.++
T Consensus 8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l 87 (120)
T d2agjh1 8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL 87 (120)
T ss_dssp CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC
T ss_pred CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee
Confidence 3456789999999999866421 136889983 22111 00 01122211 1 24999999
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 88 ~~eDsAvYyCAr~ 100 (120)
T d2agjh1 88 DPVDTATYYCART 100 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred eeccceEEeeEec
Confidence 9999999999744
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=7.8e-06 Score=45.83 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccccC--CeEecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ--GIIMTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
++.++|.|.+.+ +|....++|.+||..+...... .....+++ .....+...+...|+|.+...
T Consensus 15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~ 83 (95)
T d1k5na1 15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE 83 (95)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence 457899999987 4666689999999877643211 11111111 112233445567899999853
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=5.4e-07 Score=52.15 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=44.5
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce---eEE---eecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ---AHI---LRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~---~~~---~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..++.+.|.|.+.+. |....|.|+++|..+...... ... ..++. .+.|.+..-.+.....|+|.|.+..
T Consensus 18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s 96 (108)
T d1ow0a2 18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA 96 (108)
T ss_dssp TSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred ccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence 356789999999985 556799999998765432111 011 11222 3456665555555678999998854
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=6e-06 Score=47.18 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=41.8
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC-eEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG-IIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~-~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+++|.|.+.+ +|....++|+++|..+....... ....+ +.|.|..-.......|+|.+.+.
T Consensus 19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~ 91 (104)
T d1o0va1 19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQ 91 (104)
T ss_dssp CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEET
T ss_pred CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEEC
Confidence 34567999999987 56666899999998876422111 11122 23555554434467799999864
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=2.5e-06 Score=46.33 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=40.0
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCC-CCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~ 80 (207)
..|.+|+|+|...+. . .|.|.+++..++... +..|.+.+... +++|.|.|...
T Consensus 12 ISGTtV~LTCP~~~~--~-~I~Wkkn~~~i~g~~-------~~~L~L~~FSE~e~SGyY~C~~~ 65 (100)
T d1jbja2 12 ISGTSVELTCPLDSD--E-NLKWEKNGQELPQKH-------DKHLVLQDFSEVEDSGYYVCYTP 65 (100)
T ss_dssp EETTEEEEECSSCCC--T-TCEEEETTEEECSCC-------CSEEEEESCCTTTSCEEEEEECS
T ss_pred EeCCEEEEECCCCCC--C-ceEEeeccccCCCCC-------CcEEEEccccccccCcceEEecC
Confidence 459999999996653 2 799999998877532 34677777654 79999999643
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.7e-05 Score=43.83 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeE-EeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH-ILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|.+++|.|..... . ..+..+|+|........... ....+....+.|.+++..|+|.|+|.-...
T Consensus 14 ~v~~G~~VTL~C~~~~~-~-~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 82 (98)
T d1ugna2 14 VVNSGGNVTLQCDSQVA-F-DGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 82 (98)
T ss_dssp EEETTCCEEEEEECSSC-C-SEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred ccCCCCcEEEEeCCCCC-C-CEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence 46789999999987643 3 38888887765332211111 112234567899999999999999987643
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.1e-06 Score=48.96 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=44.0
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..++|.|.+.+. |....+.|.++|........ ......++. .+.|.+..-.+.....|+|.|.+..
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~ 90 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 90 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 35678999999985 66789999999876432111 122223343 3446665545455667999999864
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.11 E-value=1.9e-05 Score=45.60 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=47.4
Q ss_pred ceeeeeeCCcEEEEEEeccC---CCCceEEEEEc--Cceeee--c---------cceeEEeecCceEEEEEecCCCCCCe
Q psy10918 107 RVLGVARQEKVNISCEVDAN---PPDVKFSWTFN--NSAETV--N---------VAQAHILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~--~~~~~~--~---------~~~~~~~~~~~~~~l~i~~~~~~~~g 170 (207)
....+.+|+.++|.|..... .....+.|++. +..... . ..+......+....|.|.+++.+|++
T Consensus 9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA 88 (111)
T d2gsia1 9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAA 88 (111)
T ss_dssp SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCc
Confidence 34457799999999987643 11225899974 222111 0 01222333445678999999999999
Q ss_pred EEEEEEecC
Q psy10918 171 TLICWGSNK 179 (207)
Q Consensus 171 ~y~C~~~n~ 179 (207)
.|.|.+...
T Consensus 89 ~YyCa~~~~ 97 (111)
T d2gsia1 89 TYYCSHIRE 97 (111)
T ss_dssp EEEEEECSS
T ss_pred eEEEEECCC
Confidence 999987643
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.10 E-value=1.1e-05 Score=46.61 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=46.7
Q ss_pred eeeeeeCCcEEEEEEeccC---CCCceEEEEEc--Cceeeecc-----------ceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 108 VLGVARQEKVNISCEVDAN---PPDVKFSWTFN--NSAETVNV-----------AQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~--~~~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
...+.+|+.++|.|..... .....+.|++. |+....-. .+.....++....|.|.+++.+|+|.
T Consensus 10 ~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 89 (111)
T d1j05a_ 10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT 89 (111)
T ss_dssp EEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEE
T ss_pred EEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCcc
Confidence 3446789999999987532 12225999973 32211100 11223334556789999999999999
Q ss_pred EEEEEecC
Q psy10918 172 LICWGSNK 179 (207)
Q Consensus 172 y~C~~~n~ 179 (207)
|.|.+.+.
T Consensus 90 YyCa~~~~ 97 (111)
T d1j05a_ 90 YYCQQTNE 97 (111)
T ss_dssp EEEEECSS
T ss_pred EEEeecCC
Confidence 99988753
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.09 E-value=2.2e-05 Score=45.22 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=45.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc---------------ceeEEeecCceEEEEEecCCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV---------------AQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~---------------~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
....+.+|++++|.|..... .. .+.|++. |+....-. .............|.|.++..+|+
T Consensus 9 ~~~~~~~G~~vtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 86 (110)
T d2aq2a1 9 RNKVAVTGEKVTLSCQQTNN-HN-NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT 86 (110)
T ss_dssp SEEEECTTCCEEEEEEESSC-CS-EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCCEEEEEEECCC-cC-cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence 34456799999999987653 33 8999983 22211000 001122233456799999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
|.|.|.+..
T Consensus 87 a~YyCa~~~ 95 (110)
T d2aq2a1 87 SVYFCASGG 95 (110)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeeCC
Confidence 999998874
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.7e-06 Score=48.72 Aligned_cols=65 Identities=6% Similarity=0.027 Sum_probs=43.5
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.+..|++++|.|.... +. ..+.++++|........ .....+....+.|.+++..|+|.|+|....
T Consensus 14 ~V~~G~~VTL~C~~~~-~~-~~f~L~keg~~~~~~~~--~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~ 78 (96)
T d1ugna1 14 VITQGSPVTLRCQGGQ-ET-QEYRLYREKKTAPWITR--IPQELVKKGQFPIPSITWEHTGRYRCYYGS 78 (96)
T ss_dssp EEETTCCEEEEEECCT-TC-CCEEEEESSSCCHHHHT--SCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred ccCCCCcEEEEEeCCC-CC-CEEEEEECCCCcccEEE--ccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence 4679999999999753 33 37888887754221110 000112334688999999999999998764
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.09 E-value=5.1e-06 Score=47.80 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=47.8
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceee-ec----------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAET-VN----------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~-~~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
|....+.+|+.++|.|........ .+.|++. |+... +- ..+...........|.|.+++.+|+|.|
T Consensus 6 P~s~~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y 84 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY 84 (108)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred CCeeEECCCCCEEEEEECCCCCCc-cEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence 334557789999999987644433 7889973 22111 00 0112333445567899999999999999
Q ss_pred EEEEec
Q psy10918 173 ICWGSN 178 (207)
Q Consensus 173 ~C~~~n 178 (207)
.|.+..
T Consensus 85 yCA~~~ 90 (108)
T d1nfde1 85 YCLSSY 90 (108)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 998864
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.08 E-value=2.4e-05 Score=45.28 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=46.4
Q ss_pred ceeeeeeCCcEEEEEEeccCC-----CCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANP-----PDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
....+.+|++++|.|...+.. ....+.|++. |+....- ........+.....|.|.+++.+|
T Consensus 9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~D 88 (113)
T d1q9ra1 9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAED 88 (113)
T ss_dssp SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCC
Confidence 344567899999999865421 1125899974 2211100 011223334556679999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
+|.|.|.+..
T Consensus 89 sa~YyCA~~~ 98 (113)
T d1q9ra1 89 LAVYYCKQSY 98 (113)
T ss_dssp CEEEEEEECS
T ss_pred CeEEEecccC
Confidence 9999998764
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=98.08 E-value=1.7e-06 Score=49.35 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=43.6
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce-eEEeecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ-AHILRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..+.|.|.+.+. |....+.|.++|......... .....++. .+.|.+..-.+.....|+|.+.+..
T Consensus 18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 35678999999985 666899999998653321111 12223333 3456665555455678999999754
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.08 E-value=4.6e-05 Score=44.10 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=46.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEE--cCceeeecc----ce----------e-EEeecCceEEEEEecCCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTF--NNSAETVNV----AQ----------A-HILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~--~~~~~~~~~----~~----------~-~~~~~~~~~~l~i~~~~~~~~ 169 (207)
....+.+|+.++|.|..... .. .+.|++ .++...... .. . ..........|.|.++..+|+
T Consensus 7 ~~~~~~~G~svtl~C~~~~~-~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 84 (113)
T d2ntsp1 7 RYLIKTRGQQVTLSCSPISG-HR-SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS 84 (113)
T ss_dssp SEEEEETTCCEEEEEECSTT-CC-EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred CeEEECCCCCEEEEEEECCC-CC-EEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence 34456799999999986553 33 889998 333221110 00 0 111223345799999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
|.|.|.+...
T Consensus 85 a~YyCA~~~~ 94 (113)
T d2ntsp1 85 ALYLCASSLA 94 (113)
T ss_dssp EEEEEEEESS
T ss_pred eeeeeeeeCC
Confidence 9999998754
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.08 E-value=1e-05 Score=45.53 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=38.0
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCccccccccC--CeEecCCe---EEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ--GIIMTNQS---LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~---l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..|+..+|.|.+.+. |....+.|.+||..+...... .....+++ .....+...+...|+|.+.+.
T Consensus 14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~ 84 (97)
T d1uvqb1 14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHP 84 (97)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECT
T ss_pred cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeC
Confidence 346778999999874 555689999999876542111 11112222 222344566778999999754
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=7.4e-06 Score=45.94 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=41.3
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeecccee--EEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQA--HILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+..++|.|.+.|+ |..+.++|.++|.......... ....++.........+...+...|+|.+....
T Consensus 15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~ 84 (95)
T d1k5na1 15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEG 84 (95)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECc
Confidence 4578999999996 5567999999987654332221 12222222222222334455568999999753
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=98.07 E-value=2.9e-06 Score=47.73 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=40.9
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+..++|.|.+.|+ |..+.+.|++++....... .......++.........+..++...|+|.+.+..
T Consensus 16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s 84 (96)
T d2h26a1 16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS 84 (96)
T ss_dssp TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence 4578999999996 5567999999876542211 11223334443222222333455668999999854
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.06 E-value=2.8e-05 Score=44.96 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=46.8
Q ss_pred ceeeeeeCCcEEEEEEeccCC----CCceEEEEEcC--ceeeec-----------cceeEEeecCceEEEEEecCCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANP----PDVKFSWTFNN--SAETVN-----------VAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~----~~~~~~W~~~~--~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
....+.+|++++|.|...+.. ....+.|++.. ...... ..+......+....|.|.+++.+|+
T Consensus 9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~Ds 88 (112)
T d1mjul1 9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDV 88 (112)
T ss_dssp SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred CEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCC
Confidence 344567899999999876531 22378998732 221110 0112233445567899999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
+.|.|....
T Consensus 89 AvYyCa~~~ 97 (112)
T d1mjul1 89 GVYYCLQHL 97 (112)
T ss_dssp EEEEEEECS
T ss_pred ceEEEEeCC
Confidence 999996543
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=98.06 E-value=1.2e-05 Score=45.29 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=42.5
Q ss_pred CcEEEEEEeccC-CCCceEEEEEcCceeeeccc------eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 115 EKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA------QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 115 ~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..++|.|.+.|+ |..+.+.|.+||..+..... ......+++........+...+...|+|.+.....
T Consensus 15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~ 88 (98)
T d1u58a1 15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIAT 88 (98)
T ss_dssp SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGG
T ss_pred CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 468999999996 56789999998875432111 11223344443333334555666789999987543
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2.4e-05 Score=43.74 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=39.3
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEe-cCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIM-TNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.|+.++|.|.+.+ +|.+ .+.|++++..+.......... .++ .|.+. ..+...|.|.+.+.
T Consensus 15 s~~~~~L~C~~~g~~P~~-~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~ 82 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEP-HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYG 82 (95)
T ss_dssp STTEEEEEEEEEEESSCE-EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEET
T ss_pred CCCEEEEEEEECcccCCC-EEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEec
Confidence 3667899999987 6777 999999998876432211111 112 24443 34567899999864
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=4.4e-05 Score=40.59 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=49.7
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc----cee-EEeecCc--eEEEEEecCCCCCCeEEEEEEecC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV----AQA-HILRSGT--LSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~-~~~~~~~--~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
....+..|+.+.|.|.+.--...+.++|-|-++..-... ... .....++ ..+|.+..+-.+|.|.|+|.|.-.
T Consensus 11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 344567899999999997533323999998444322211 111 1222232 456888999999999999999865
Q ss_pred CCC
Q psy10918 180 IGH 182 (207)
Q Consensus 180 ~g~ 182 (207)
.+.
T Consensus 91 s~v 93 (104)
T d1xaua_ 91 SQV 93 (104)
T ss_dssp TEE
T ss_pred hhh
Confidence 543
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=1.4e-05 Score=44.15 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=38.4
Q ss_pred CCCcEEEEeEeccC-CCCcEEEEEECCccccccccC--CeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ--GIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~--~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+. |....++|.++|..+...... .....++ .|.+. ..+...|+|.+...
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~ 83 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ 83 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence 45679999999884 655689999999877642211 1111122 24443 34455899998754
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.04 E-value=1.4e-05 Score=46.14 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=48.2
Q ss_pred CceeeeeeCCcEEEEEEeccCCC-CceEEEEEcC--ceeee-----------cccee--EEeecCceEEEEEecCCCCCC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPP-DVKFSWTFNN--SAETV-----------NVAQA--HILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~--~~~~~-----------~~~~~--~~~~~~~~~~l~i~~~~~~~~ 169 (207)
|....+.+|++++|.|...+... ...+.|++.. +.... ...+. ..........|.|.+++.+|+
T Consensus 7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds 86 (111)
T d1cd0a_ 7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE 86 (111)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence 33456779999999999876432 2258999742 22110 00111 222334567899999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
|.|.|.+.+.
T Consensus 87 a~YyCA~~~~ 96 (111)
T d1cd0a_ 87 ADYYCQSYDA 96 (111)
T ss_dssp EEEEEEEEET
T ss_pred cEEEEeeccC
Confidence 9999987653
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=2.8e-06 Score=48.35 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=43.6
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
...+.|.|.+.+. |....+.|.++|........ ......++. .+.|.+..-.+.....|+|.+....
T Consensus 18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 89 (101)
T d1cqka_ 18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG 89 (101)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 3568999999995 66789999999876432111 112223333 3456665544456678999999864
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.03 E-value=1.2e-05 Score=46.38 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeE--EeecCceEEEEEecCCCCCCeE
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAH--ILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~--~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
....+.+|+.++|.|........ .+.|++. |+....- ..+.. ....+....|.|.++..+|+|.
T Consensus 8 ~~~~~~~G~~vtl~C~~~~~~~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~ 86 (110)
T d1ac6a_ 8 GQVALSEEDFLTIHCNYSASGYP-ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAV 86 (110)
T ss_dssp SEEEEETTEEEEECEEEECSSCC-EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEE
T ss_pred CeEEECCCCCEEEEEEecCCCCc-ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcc
Confidence 33457799999999987654444 7999983 2211110 00111 1122335679999999999999
Q ss_pred EEEEEec
Q psy10918 172 LICWGSN 178 (207)
Q Consensus 172 y~C~~~n 178 (207)
|.|.+..
T Consensus 87 YyCA~~~ 93 (110)
T d1ac6a_ 87 YYCALSG 93 (110)
T ss_dssp EEEEEEE
T ss_pred cceeecC
Confidence 9998864
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=9e-06 Score=46.69 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeE-E--eecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAH-I--LRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~-~--~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+..++|.|.+.+. |....|.|.++|........... . ..++. .+.|.|..-.+.....|+|.|......
T Consensus 20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~ 95 (107)
T d1mjul2 20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 95 (107)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence 4578999999986 55679999998876432211111 1 12233 245666555555567899999986543
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=8.5e-06 Score=46.35 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=41.0
Q ss_pred CCCcEEEEeEeccC-CCCcEEEEEECCcccccccc--CCeEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA--QGIIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~--~~~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+. |....|.|++||..+..... ......+ +.|.|..-.......|+|.+.+.
T Consensus 19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 91 (102)
T d1q0xl2 19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHE 91 (102)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEET
T ss_pred CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 45678999999774 55568999999987754211 1111122 23555555445577999999853
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.5e-06 Score=49.63 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=43.0
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc--eeEEeecCce---EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA--QAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..+.|.|.+.+. |..+.+.|.++|..+..... ......++.. +.|.+..-.+.....|+|.+.+..
T Consensus 19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1rzfl2 19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 92 (102)
T ss_dssp HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 35678999999985 66679999999876543221 1122233433 345554433344567999999853
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.02 E-value=1.5e-05 Score=45.23 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=44.7
Q ss_pred eCCcEEEEEEeccC-CCC-ceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPD-VKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..+.|.|.+.++ |+. ..+.|.+++..............++. .+.|.+....+.....|+|.|.+...
T Consensus 18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~ 91 (102)
T d2fbjh2 18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN 91 (102)
T ss_dssp CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence 35789999999995 553 57888887765443222223333443 34566666666666789999987543
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.01 E-value=5.2e-05 Score=43.69 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=44.7
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc---------------ceeEEee-cCceEEEEEecCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV---------------AQAHILR-SGTLSVVAYSPNSELD 168 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~---------------~~~~~~~-~~~~~~l~i~~~~~~~ 168 (207)
....+.+|++++|.|..... .. .+.|++. |+....-. ....... ......|.|.++..+|
T Consensus 7 ~~~~~~~G~svtl~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D 84 (111)
T d2esve1 7 SHSVIEKGQTVTLRCDPISG-HD-NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED 84 (111)
T ss_dssp SEEEEETTCCEEEEEECCTT-CS-EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred CEEEECCCCCEEEEEEECCC-Cc-eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence 34457799999999986543 33 8999973 22211100 0011111 1234579999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
+|.|.|.+..
T Consensus 85 sa~YyCa~~~ 94 (111)
T d2esve1 85 SGVYFCASSQ 94 (111)
T ss_dssp CEEEEEEEES
T ss_pred CceEEEeeeC
Confidence 9999998764
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.01 E-value=3e-05 Score=44.89 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred ceeeeeeCCcEEEEEEeccCC----CCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANP----PDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~----~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
....+.+|+.++|.|...+.. ....+.|++. |+....- ..+......+....|.|.++..+|+
T Consensus 10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds 89 (113)
T d1n4xl_ 10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL 89 (113)
T ss_dssp SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred CEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccC
Confidence 344567999999999976432 1236899973 2211110 0112233345567899999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
|.|.|...+
T Consensus 90 avYyCa~~~ 98 (113)
T d1n4xl_ 90 GIYYCFQGS 98 (113)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEECC
Confidence 999997664
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.01 E-value=1e-05 Score=46.65 Aligned_cols=68 Identities=18% Similarity=0.377 Sum_probs=44.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCC--cEEEEEE--CCcccc------ccc--------cCCeE--ec--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV--YKVEWRH--NNKTLH------HNI--------AQGII--MT--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~--~~~~~~------~~~--------~~~~~--~~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.|.... +.+.|+| .|+-+. ... ..++. .+ . ..|+|.+++
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~ 87 (119)
T d1ncwh1 8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT 87 (119)
T ss_dssp SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence 55678899999999999886442 4678987 232221 000 01111 11 1 238899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (119)
T d1ncwh1 88 TEDTATYYCAGL 99 (119)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCceEEEEeEe
Confidence 999999999754
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.01 E-value=7.4e-05 Score=43.08 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=46.4
Q ss_pred CceeeeeeCCcEEEEEEeccCC----CCceEEEEEc--Cceeeec-----------cceeEEeecCceEEEEEecCCCCC
Q psy10918 106 QRVLGVARQEKVNISCEVDANP----PDVKFSWTFN--NSAETVN-----------VAQAHILRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~~W~~~--~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~~ 168 (207)
|....+.+|+.++|.|...+.. ....+.|++. |.....- ..+......+....|.|.+++.+|
T Consensus 8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD 87 (112)
T d1ncwl1 8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED 87 (112)
T ss_dssp CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence 3445578999999999865432 1226889973 2221110 011222334456689999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
+|.|.|...+
T Consensus 88 sAvYYC~~~~ 97 (112)
T d1ncwl1 88 LGVYYCWQGT 97 (112)
T ss_dssp CEEEEEEECS
T ss_pred CEeEEEEcCC
Confidence 9999996654
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.00 E-value=1.2e-05 Score=46.62 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=44.5
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--ccc------cccc---------cCCeE--ec--CC--eEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTL------HHNI---------AQGII--MT--NQ--SLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~------~~~~---------~~~~~--~~--~~--~l~i~~~ 67 (207)
.....+.+|+++.|.|.+.+... .+.+.|+|.. +.+ .... ..++. .+ .. .|+|.++
T Consensus 8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L 87 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (122)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence 45667899999999999987542 2368898832 111 1100 11111 11 11 3888899
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 88 ~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 88 RPEDTAVYYCARD 100 (122)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEeec
Confidence 9999999999764
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.00 E-value=1.5e-05 Score=45.85 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=44.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------ccc---------ccCCeE--ecC--C--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHN---------IAQGII--MTN--Q--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~---------~~~~~~--~~~--~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|++. |+.+ ... ..-++. .++ . .|+|.+++
T Consensus 8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~ 87 (117)
T d1iqdb1 8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence 4456788999999999987532 236889882 2221 100 011111 111 1 38999999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|++.|+|....
T Consensus 88 ~eDtAvYYCA~~~ 100 (117)
T d1iqdb1 88 SDDTAVYYCAVPD 100 (117)
T ss_dssp GGGCEEEEEEECS
T ss_pred cCcceEEEEeEcC
Confidence 9999999998653
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.00 E-value=1.3e-05 Score=46.07 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc--------cCCeE--ecC----CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI--------AQGII--MTN----QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~--------~~~~~--~~~----~~l~i~~~~~ 69 (207)
....+.+|++++|.|.+.+... .+.+.|++. |+.+ .... ..++. .++ ..|+|.+++.
T Consensus 8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~ 87 (116)
T d7fabh1 8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA 87 (116)
T ss_dssp CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence 4567889999999999987432 237889882 2211 1100 01111 111 2489999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|...
T Consensus 88 eDtAvYyCAr~ 98 (116)
T d7fabh1 88 ADTAVYYCARN 98 (116)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEeeee
Confidence 99999999754
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.6e-05 Score=45.64 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE---eecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI---LRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+..+.|.|.+.+. |....|.|.+||............ ..++. .+.|.+..-.+.....|+|.+.+....
T Consensus 20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~ 95 (107)
T d1c5cl2 20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 95 (107)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence 4678999999986 556799999998764322211111 11233 345667655556666899999986543
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.2e-05 Score=45.89 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=42.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCC--CCcEEEEEECCc-ccc-----c--------cccC--CeE--ecC--CeEEE
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNK-TLH-----H--------NIAQ--GII--MTN--QSLVL 64 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~~-~~~-----~--------~~~~--~~~--~~~--~~l~i 64 (207)
.+.+++ ..+.+|++++|.|...... ....+.|++... .+. . .... ... ..+ .+|+|
T Consensus 4 ~V~Q~p--~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I 81 (118)
T d1yjdc1 4 LVKQSP--MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYL 81 (118)
T ss_dssp CEECCS--EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEE
T ss_pred EEEcCC--cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEE
Confidence 344443 3467899999999976432 222334555221 110 0 0001 111 111 25999
Q ss_pred EecCCCCCeeeEEEEeee
Q psy10918 65 QRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~ 82 (207)
.+++.+|+|.|.|.+...
T Consensus 82 ~~l~~~DsavYyCa~~~~ 99 (118)
T d1yjdc1 82 QNLYVNQTDIYFCKIEVM 99 (118)
T ss_dssp ESCCGGGCEEEEEEEEEE
T ss_pred CCCCcccCeEEEEEEecc
Confidence 999999999999987643
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.99 E-value=4.6e-05 Score=44.56 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=47.9
Q ss_pred ceeeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeecc-----------ceeE--EeecCceEEEEEecCCCCCCe
Q psy10918 107 RVLGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVNV-----------AQAH--ILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~~-----------~~~~--~~~~~~~~~l~i~~~~~~~~g 170 (207)
....+.+|+.++|.|...+.. ....+.|++. |+....-. .+.. .........|.|.+++.+|+|
T Consensus 9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa 88 (120)
T d1hxma1 9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEG 88 (120)
T ss_dssp SEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred CCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCc
Confidence 344577999999999987653 2237999973 22211100 1111 222334678999999999999
Q ss_pred EEEEEEecC
Q psy10918 171 TLICWGSNK 179 (207)
Q Consensus 171 ~y~C~~~n~ 179 (207)
.|.|.....
T Consensus 89 ~YyCA~~~~ 97 (120)
T d1hxma1 89 SYYCACDTL 97 (120)
T ss_dssp EEEEEEECC
T ss_pred eeecCcccC
Confidence 999988764
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.99 E-value=1.6e-05 Score=45.57 Aligned_cols=68 Identities=15% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc--------cCCeE--ec--C--CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI--------AQGII--MT--N--QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~--------~~~~~--~~--~--~~l~i~~~~~ 69 (207)
....+.+|+++.|.|.+.|... .+.+.|++. |+.+. ... ..++. .+ . ..|+|.+++.
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~ 87 (116)
T d1a2yb_ 8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT 87 (116)
T ss_dssp CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence 4567889999999999987432 237889883 22211 000 01111 11 1 1389999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|.-.
T Consensus 88 eDTAvYYCAr~ 98 (116)
T d1a2yb_ 88 DDTARYYCARE 98 (116)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEEEEe
Confidence 99999999754
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.99 E-value=1.3e-05 Score=44.87 Aligned_cols=67 Identities=12% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccce---eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ---AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+..+.|.|.+.++ |..+.+.|.++|..+...... .....++..+......+...+...|+|.+....
T Consensus 15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~ 85 (94)
T d1hyrc1 15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG 85 (94)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence 3468999999996 667899999998765432211 112223333332323344455567999998743
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=1.3e-05 Score=46.02 Aligned_cols=68 Identities=15% Similarity=0.375 Sum_probs=44.1
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------cc--------ccCCeEe--c--C--CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HN--------IAQGIIM--T--N--QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~--------~~~~~~~--~--~--~~l~i~~~~~ 69 (207)
....+.+|++++|.|.+.|... .+.+.|+|. |+.+. .. ...++.. + . ..|+|.+++.
T Consensus 8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~ 87 (117)
T d1c5db1 8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT 87 (117)
T ss_dssp CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence 4567889999999999987533 236889883 22221 00 0111211 1 1 2489999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|...
T Consensus 88 eDtAvYYCAr~ 98 (117)
T d1c5db1 88 EDTAIYFCTRE 98 (117)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEEecc
Confidence 99999999654
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.98 E-value=2.6e-05 Score=44.99 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=44.4
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--ccc------cc--------cccCCeEe--cC----CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTL------HH--------NIAQGIIM--TN----QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~------~~--------~~~~~~~~--~~----~~l~i~~~~~ 69 (207)
....+.+|++++|.|.+.+... .+.+.|+|.. +.+ .. ....++.. +. ..|+|.+++.
T Consensus 7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~ 86 (119)
T d1kxvc_ 7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP 86 (119)
T ss_dssp CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence 4456789999999999987543 3468898832 111 10 00112221 11 1489999999
Q ss_pred CCCeeeEEEEee
Q psy10918 70 QSAGNYTCVGFN 81 (207)
Q Consensus 70 ~d~g~Y~C~~~~ 81 (207)
+|++.|+|....
T Consensus 87 eDtA~YYCAr~~ 98 (119)
T d1kxvc_ 87 DDTAMYYCKPSL 98 (119)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCcceEeeeecc
Confidence 999999997653
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.98 E-value=2.3e-05 Score=45.37 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=43.5
Q ss_pred CCCcccCCCcEEEEeEeccCC---CCcEEEEEEC--Ccccc------ccc--------cCCeE--ec--C--CeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHN--NKTLH------HNI--------AQGII--MT--N--QSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~--~~~~~------~~~--------~~~~~--~~--~--~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.. ..+.+.|+|. |+.+. ... .-++. .+ . ..|+|.++
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL 87 (120)
T d1ai1h1 8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV 87 (120)
T ss_dssp CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence 456788999999999988753 2236789883 22221 110 01111 11 1 13888899
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 88 ~~eDtAvYYCAr~ 100 (120)
T d1ai1h1 88 TNEDTAMYYCSRE 100 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred eccceeEEEEEec
Confidence 9999999999754
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.7e-05 Score=45.72 Aligned_cols=71 Identities=10% Similarity=0.088 Sum_probs=41.1
Q ss_pred eeeeCCcEEEEEEeccCCC---C-ceEEEEEcCceeeec--cc-----------eeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 110 GVARQEKVNISCEVDANPP---D-VKFSWTFNNSAETVN--VA-----------QAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~---~-~~~~W~~~~~~~~~~--~~-----------~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
....|++++|.|....... . ..+.|.++....... .. ..+.........|.|.+++.+|+|.|
T Consensus 5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y 84 (110)
T d1ncna_ 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLY 84 (110)
T ss_dssp EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEE
T ss_pred EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEE
Confidence 3568999999998764321 1 123444433221110 00 00111112234699999999999999
Q ss_pred EEEEecCC
Q psy10918 173 ICWGSNKI 180 (207)
Q Consensus 173 ~C~~~n~~ 180 (207)
.|.+....
T Consensus 85 ~C~V~~~~ 92 (110)
T d1ncna_ 85 QCIIHHKK 92 (110)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 99997544
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.96 E-value=1.2e-06 Score=50.17 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=44.5
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeE-EeecCce---EEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAH-ILRSGTL---SVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+..+.|.|.+.+. |..+.|.|.++|..+........ ...++.. +.|.+....+.+...|+|.|.+.....
T Consensus 19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~ 94 (104)
T d1nfde2 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV 94 (104)
T ss_dssp HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence 35578899999985 55679999999887543222111 2223332 334444444455678999999876544
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.96 E-value=1.2e-05 Score=46.27 Aligned_cols=68 Identities=16% Similarity=0.343 Sum_probs=43.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--C--CeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--N--QSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~--~~l~i~~~ 67 (207)
.....+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... ..++. .+ . ..|+|.++
T Consensus 7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL 86 (118)
T d2jelh1 7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence 35566789999999999987543 236889882 2211 1000 01111 11 1 14889999
Q ss_pred CCCCCeeeEEEE
Q psy10918 68 NRQSAGNYTCVG 79 (207)
Q Consensus 68 ~~~d~g~Y~C~~ 79 (207)
+.+|++.|+|.-
T Consensus 87 ~~eDTAvYYCAr 98 (118)
T d2jelh1 87 TSEDSAIYYCAR 98 (118)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccCcceeeeEEE
Confidence 999999999954
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.96 E-value=1.6e-06 Score=51.60 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=43.9
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce---eEE----eecCc---eEEEEEecCCCCCCe-EEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ---AHI----LRSGT---LSVVAYSPNSELDYG-TLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~---~~~----~~~~~---~~~l~i~~~~~~~~g-~y~C~~~n~~ 180 (207)
.+..++|.|.+.+. |..+.|.|+++|+.+...... ... ..++. .+.|.+....+.+.| .|+|.+....
T Consensus 19 ~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~~ 98 (127)
T d1ogae2 19 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYG 98 (127)
T ss_dssp HHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred cCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEECC
Confidence 45678999999986 557899999988765322110 000 11222 345777666656655 6999998754
Q ss_pred C
Q psy10918 181 G 181 (207)
Q Consensus 181 g 181 (207)
.
T Consensus 99 l 99 (127)
T d1ogae2 99 L 99 (127)
T ss_dssp B
T ss_pred C
Confidence 3
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.96 E-value=3.8e-05 Score=44.62 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=42.7
Q ss_pred CCCcccCCCcEEEEeEeccCCC---CcEEEEEEC--Ccccc------ccc--------cCCeE--ec--C--CeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHN--NKTLH------HNI--------AQGII--MT--N--QSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~--~~~~~------~~~--------~~~~~--~~--~--~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+... .+.+.|+|. ++.+. ... ..++. .+ . ..|+|.++
T Consensus 8 g~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl 87 (123)
T d1r0ah1 8 GPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTV 87 (123)
T ss_dssp CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred CCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeec
Confidence 4566788999999999876432 235789872 22211 000 01111 11 1 23899999
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 88 ~~eDsAvYyCAr~ 100 (123)
T d1r0ah1 88 ETADTAIYYCAQS 100 (123)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccccceEEeeccc
Confidence 9999999999754
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=3.7e-05 Score=44.83 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=45.2
Q ss_pred eeeeeeCCcEEEEEEeccCC--CCceEEEEEc--Cceeeec-----cc---------eeEEeecCceEEEEEecCCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDANP--PDVKFSWTFN--NSAETVN-----VA---------QAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~--~~~~~~~-----~~---------~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
...+..|+.++|.|...... ....+.|++. ++..... .. ............|.|.+++.+|+
T Consensus 8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 87 (117)
T d1dqta_ 8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT 87 (117)
T ss_dssp EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence 34456889999999875432 2235789983 2221110 00 01222334456799999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
|.|.|.+..
T Consensus 88 a~YyCa~~~ 96 (117)
T d1dqta_ 88 GLYLCKVEL 96 (117)
T ss_dssp EEEEEEEEE
T ss_pred EeEEEEEec
Confidence 999998874
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.96 E-value=3.6e-05 Score=43.33 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=36.2
Q ss_pred CCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------ccc---------ccCCeEec--C----CeEEEEecCCCCCee
Q psy10918 19 EDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHN---------IAQGIIMT--N----QSLVLQRVNRQSAGN 74 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~---------~~~~~~~~--~----~~l~i~~~~~~d~g~ 74 (207)
+|++++|.|.+.+... .+.+.|+|. |+.+ ... ...++... . ..|+|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 5899999999987532 237889972 2221 100 01122111 1 249999999999999
Q ss_pred eEEEEee
Q psy10918 75 YTCVGFN 81 (207)
Q Consensus 75 Y~C~~~~ 81 (207)
|+|....
T Consensus 81 YYCAr~~ 87 (103)
T d1oari_ 81 YYCARMW 87 (103)
T ss_dssp EEEEEEE
T ss_pred EEeEEEC
Confidence 9997643
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.95 E-value=3.7e-05 Score=44.41 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=44.2
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec----cc-----------eeEE-eecCceEEEEEecCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN----VA-----------QAHI-LRSGTLSVVAYSPNSELD 168 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~----~~-----------~~~~-~~~~~~~~l~i~~~~~~~ 168 (207)
....+.+|+.++|.|..... .. .+.|++. ++....- .. +... ........|.|.++..+|
T Consensus 7 ~~~~~~~G~svtl~C~~~~~-~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (112)
T d1kgce1 7 RYKVAKRGQDVALRCDPISG-HV-SLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED 84 (112)
T ss_dssp SEEEEETTCCEEEEEECCTT-CC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred CeEEECCCCCEEEEEEECCC-CC-EEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence 33456799999999986543 33 8999983 2211100 00 0111 112234679999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
+|.|.|.++.
T Consensus 85 sa~YyCa~~~ 94 (112)
T d1kgce1 85 SAVYLCASSL 94 (112)
T ss_dssp CEEEEEEEES
T ss_pred CEEEEEeeeC
Confidence 9999998864
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.95 E-value=1.2e-05 Score=45.69 Aligned_cols=64 Identities=20% Similarity=0.383 Sum_probs=40.0
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC-eEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG-IIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~-~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....++|.+||.......... ....+ +.|.|..-.......|+|.+.+.
T Consensus 18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~ 89 (102)
T d1igtb4 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE 89 (102)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECT
T ss_pred cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence 4778999999987 46556999999997654321111 11112 23555544334456899999753
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.94 E-value=1.1e-05 Score=46.45 Aligned_cols=68 Identities=16% Similarity=0.339 Sum_probs=42.8
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCeEe--c--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGIIM--T--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~~~--~--~~--~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+... .+.+.|++. |+.+. ... ..++.. + .. .|+|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~ 87 (115)
T d1f3dh1 8 GPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT 87 (115)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence 3456789999999999887532 236889872 22111 000 011211 1 12 38999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtAvYYCAr~ 99 (115)
T d1f3dh1 88 FEDSAVYYCAND 99 (115)
T ss_dssp GGGCEEEEEEEC
T ss_pred cCCcEEEEEecc
Confidence 999999999643
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=8.8e-06 Score=46.27 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=40.8
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.++.+.|.|.+.++ |..+.|.|..++....... ......++. .+.|.+..-.. +.+.|+|.|.+..+.
T Consensus 19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~-~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~ 90 (102)
T d1mjuh2 19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASS 90 (102)
T ss_dssp ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGT
T ss_pred CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEe-cccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCC
Confidence 45789999999986 5677999976654322111 112233443 34566655554 357899999986543
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=97.93 E-value=4.5e-05 Score=42.83 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccccC------CeEecCCeE---EEEecCCCCCeeeEEEEeee
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ------GIIMTNQSL---VLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~l---~i~~~~~~d~g~Y~C~~~~~ 82 (207)
...++|.|.+.+ +|....++|.+|+..+...... .....++++ ....+...+...|+|.+...
T Consensus 14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~ 86 (98)
T d1u58a1 14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI 86 (98)
T ss_dssp SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence 346899999987 4666689999998766431100 011122332 22234455667899999754
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=1.2e-05 Score=47.28 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=44.4
Q ss_pred eeeeeeCCcEEEEEEeccC------CCCceEEEEEcCceeeec----------------cceeEEee--cCceEEEEEec
Q psy10918 108 VLGVARQEKVNISCEVDAN------PPDVKFSWTFNNSAETVN----------------VAQAHILR--SGTLSVVAYSP 163 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~------~~~~~~~W~~~~~~~~~~----------------~~~~~~~~--~~~~~~l~i~~ 163 (207)
...+.+|+.+.|.|..... .....+.|++........ ..+..+.. ......|.|.+
T Consensus 10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 89 (121)
T d2g5ra1 10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD 89 (121)
T ss_dssp EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECC
Confidence 4467799999999987421 122467898753221110 00112221 12245699999
Q ss_pred CCCCCCeEEEEEEecC
Q psy10918 164 NSELDYGTLICWGSNK 179 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~ 179 (207)
++.+|+|.|.|.+...
T Consensus 90 v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 90 ARMSDAGRYFFRMEKG 105 (121)
T ss_dssp CCGGGCEEEEEEEEET
T ss_pred CChHHCEEEEEEEEeC
Confidence 9999999999999753
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.93 E-value=1.5e-05 Score=45.76 Aligned_cols=68 Identities=12% Similarity=0.256 Sum_probs=43.4
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... .-++. .+ . ..|+|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~ 87 (117)
T d1jpth1 8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence 4566889999999999987542 247889883 2111 1000 01111 11 1 238888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (117)
T d1jpth1 88 AEDTAVYYCARD 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCceEEEEeec
Confidence 999999999653
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=1.6e-05 Score=45.25 Aligned_cols=64 Identities=16% Similarity=0.359 Sum_probs=40.7
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-CeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....++|.+||......... .....++ .|.|..-.......|+|.+.+.
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~ 89 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 89 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence 4678999999987 4655699999999876542111 1111222 3555544334456799999864
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.90 E-value=5e-05 Score=44.50 Aligned_cols=86 Identities=12% Similarity=0.210 Sum_probs=50.5
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeEe--cC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGIIM--TN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~~--~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ .... ..++.. ++ ..|.|.+++
T Consensus 8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~ 87 (135)
T d1ieha_ 8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK 87 (135)
T ss_dssp CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence 4566789999999999987532 236889873 2111 1100 111211 11 249999999
Q ss_pred CCCCeeeEEEEeeeCCCC-ccceEEEEEEeC
Q psy10918 69 RQSAGNYTCVGFNIEGDG-ESNAFFLNVMYS 98 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~~~ 98 (207)
.+|++.|+|......+.. .-+...++|...
T Consensus 88 ~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSa 118 (135)
T d1ieha_ 88 SEDTAVYYCAKYSGGALDAWGQGTQVTVSSQ 118 (135)
T ss_dssp SSSCEEEEEEEBSSSSBCCCSCCEEEEECSS
T ss_pred cccceeeEEEEecCCccceeCCCEEEEEECC
Confidence 999999999765322211 122344666543
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.90 E-value=1.8e-05 Score=45.51 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=43.8
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cc-c--------ccCCeE--ec--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HH-N--------IAQGII--MT--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~-~--------~~~~~~--~~--~~--~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+... .+.+.|+|. |+.+ .. . ...++. .+ .. .|+|.+++
T Consensus 7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~ 86 (117)
T d1um5h1 7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT 86 (117)
T ss_dssp CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence 4566889999999999987532 247889883 2211 10 0 001111 11 12 38899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 87 ~eDtAvYYCAr~ 98 (117)
T d1um5h1 87 SEDSAVYYCARS 98 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeec
Confidence 999999999743
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.90 E-value=2e-05 Score=45.54 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------cc--------ccCCeEe--c--C--CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HN--------IAQGIIM--T--N--QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~--------~~~~~~~--~--~--~~l~i~~~~~ 69 (207)
....+.+|+++.|.|.+.+... .+.+.|++. |+.+. .. ..-++.. + . ..|+|.+++.
T Consensus 8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~ 87 (120)
T d1dn0b1 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA 87 (120)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence 4567889999999999987543 236889883 22211 00 0111211 1 1 1389999999
Q ss_pred CCCeeeEEEE
Q psy10918 70 QSAGNYTCVG 79 (207)
Q Consensus 70 ~d~g~Y~C~~ 79 (207)
+|++.|+|..
T Consensus 88 eDtA~YYCAr 97 (120)
T d1dn0b1 88 ADTAVYYCAR 97 (120)
T ss_dssp GGCEEEEEEE
T ss_pred ccccEEEEEe
Confidence 9999999954
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=1.8e-05 Score=44.91 Aligned_cols=64 Identities=23% Similarity=0.407 Sum_probs=40.5
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC-eEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG-IIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~-~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.++|.|.+.+ +|....+.|+++|..+....... ....+ +.|.|..-.......|+|.+...
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 88 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 88 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 3567899999988 46666999999998765422111 11122 23555444334566899999754
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.89 E-value=1.6e-05 Score=45.68 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=42.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeEec----C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGIIMT----N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~~~----~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ .... ..++... . ..|+|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~ 87 (118)
T d1nlbh1 8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence 3456789999999999987532 236889873 2211 1100 1111111 1 138899999
Q ss_pred CCCCeeeEEEE
Q psy10918 69 RQSAGNYTCVG 79 (207)
Q Consensus 69 ~~d~g~Y~C~~ 79 (207)
.+|++.|+|..
T Consensus 88 ~eDtAvYYCAr 98 (118)
T d1nlbh1 88 NEDTATYFCAR 98 (118)
T ss_dssp GGGCEEEEEEE
T ss_pred cCcceEEEEee
Confidence 99999999953
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.89 E-value=9.1e-06 Score=46.24 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
...+.|.|.+.+. |....+.|.++|........ ......++. .+.|.+....+.....|+|.|....
T Consensus 19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~ 90 (102)
T d1i1ca2 19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG 90 (102)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence 4578999999986 55679999999875432111 112233343 3346665555556678999999854
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.88 E-value=2.9e-05 Score=44.83 Aligned_cols=67 Identities=9% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCcccCCCcEEEEeEeccCCC-CcEEEEEECC--ccc------cccc---------cCCeEec----CC--eEEEEecCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTL------HHNI---------AQGIIMT----NQ--SLVLQRVNR 69 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~------~~~~---------~~~~~~~----~~--~l~i~~~~~ 69 (207)
...+.+|+++.|.|.+.+... .+.+.|+|.. +.+ .... ..++... .. .|+|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~ 88 (121)
T d2p49b1 9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP 88 (121)
T ss_dssp CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence 356789999999999987432 2368898832 211 1100 1122211 11 388889999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|...
T Consensus 89 eDtAvYYCAr~ 99 (121)
T d2p49b1 89 EDTATYYCAAG 99 (121)
T ss_dssp GGCEEEEEEES
T ss_pred cceeEEeeecc
Confidence 99999999754
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=2.9e-05 Score=45.10 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=44.3
Q ss_pred ceeeeeeCCcEEEEEEecc---C--CCCceEEEEEcCceeeec--------------cceeEEee--cCceEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDA---N--PPDVKFSWTFNNSAETVN--------------VAQAHILR--SGTLSVVAYSPNS 165 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~---~--~~~~~~~W~~~~~~~~~~--------------~~~~~~~~--~~~~~~l~i~~~~ 165 (207)
....+.+|+.+.|.|.... . .....+.|++........ ..+..+.. ......|.|.+++
T Consensus 8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 87 (118)
T d1qfoa_ 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK 87 (118)
T ss_dssp SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC
Confidence 3445789999999998752 1 112356777643211100 01112211 1234569999999
Q ss_pred CCCCeEEEEEEecCC
Q psy10918 166 ELDYGTLICWGSNKI 180 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~ 180 (207)
.+|+|.|.|.+....
T Consensus 88 ~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 88 PEDSGTYNFRFEISD 102 (118)
T ss_dssp GGGCEEEEEEEECC-
T ss_pred hhHCEEEEEEEEeCC
Confidence 999999999997543
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=1.2e-05 Score=46.18 Aligned_cols=64 Identities=14% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCCcEEEEeEeccC-CCCcEEEEEECCcccccccc---CCeEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA---QGIIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~---~~~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.+..++|.|.+.+. |....|+|.+||..+..... ......+ +.|.|..-.......|+|.+.+.
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~ 92 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK 92 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 46679999999774 55568999999987754210 0011112 23555544434466899999854
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.88 E-value=1.3e-05 Score=45.38 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=40.4
Q ss_pred CcccCCCcEEEEeEeccCCC-CcEEEEEECC--ccc------ccc------c--cCCeE--ecC----CeEEEEecCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTL------HHN------I--AQGII--MTN----QSLVLQRVNRQS 71 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~------~~~------~--~~~~~--~~~----~~l~i~~~~~~d 71 (207)
..+.+|+++.|.|.+.+... .+.+.|++.. +.+ ... + ..++. .++ ..|+|.+++.+|
T Consensus 3 ~lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eD 82 (107)
T d1sjva_ 3 GLVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPED 82 (107)
T ss_dssp CCCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred CEecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCccc
Confidence 35688999999999977422 2367898832 211 100 0 01111 111 248999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
++.|+|...
T Consensus 83 tAvYyCA~~ 91 (107)
T d1sjva_ 83 TAVYYCYTH 91 (107)
T ss_dssp CSEEEEEEC
T ss_pred ceeeeEecc
Confidence 999999754
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.88 E-value=5.4e-05 Score=43.84 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=45.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeeecc-----c---------eeEE-eecCceEEEEEecCCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETVNV-----A---------QAHI-LRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~-----~---------~~~~-~~~~~~~~l~i~~~~~~~~ 169 (207)
....+.+|++++|.|.... ... .+.|++... ....-. . .... ........|.|.++..+|+
T Consensus 7 ~~~~~~~G~svtl~C~~s~-~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS 84 (114)
T d1ogae1 7 KYLFRKEGQNVTLSCEQNL-NHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT 84 (114)
T ss_dssp SEEEEETTCCEEECCEECS-CCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred CeEEEcCCCCEEEEEEEec-CCC-cEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence 3445779999999999763 333 899997422 111100 0 0001 1112345699999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
|.|.|.+...
T Consensus 85 a~YyCa~~~~ 94 (114)
T d1ogae1 85 AFYLCASSSR 94 (114)
T ss_dssp EEEEEEEESS
T ss_pred eeEEEeeccC
Confidence 9999987743
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=2.8e-05 Score=40.71 Aligned_cols=58 Identities=17% Similarity=0.393 Sum_probs=39.3
Q ss_pred cCCCcEEEEeEeccCCC-CcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
..|..+.|.|....... ..--.|.|+|+.+........ ...+.|. ..+++|.|.|...
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~---~tey~V~--~~D~SGeY~CVFl 68 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ---KTEFKVD--SDDQWGEYSCVFL 68 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS---EEEEEEC--GGGCCEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC---ceEEEEe--cCCCCceEEEEEc
Confidence 45888999999866543 335779999999986432211 1224443 3678999999964
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.88 E-value=2.7e-05 Score=44.83 Aligned_cols=68 Identities=10% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ .... ..++. .+ . ..|.|.+++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~ 87 (118)
T d1ct8b1 8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence 4567889999999999987432 237889872 2221 1100 00111 11 1 248888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtAvYYCAr~ 99 (118)
T d1ct8b1 88 TEDSAIYYCARY 99 (118)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeee
Confidence 999999999654
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.87 E-value=7e-05 Score=43.81 Aligned_cols=68 Identities=13% Similarity=0.303 Sum_probs=42.6
Q ss_pred CCCcccCCCcEEEEeEeccCCC---CcEEEEEEC--Ccccc------c-c-----c--cCCeE--ec--C--CeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHN--NKTLH------H-N-----I--AQGII--MT--N--QSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~--~~~~~------~-~-----~--~~~~~--~~--~--~~l~i~~~ 67 (207)
....+.+|++++|.|.+.|... .+.+.|+|. ++.+. . . + ..++. .+ . ..|+|.++
T Consensus 8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l 87 (126)
T d1etzb1 8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV 87 (126)
T ss_dssp CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence 4456788999999999876422 235679872 22221 0 0 0 11121 11 1 24999999
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 88 ~~eDtAvYyCAr~ 100 (126)
T d1etzb1 88 DTSDTATYHCARR 100 (126)
T ss_dssp CGGGCEEEEEEEE
T ss_pred cccccceEEEEEe
Confidence 9999999999854
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=3.8e-05 Score=44.44 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=44.0
Q ss_pred eeeeCCcEEEEEEeccC-CCCceEEEEEcCc--eee-ec-------------cceeEEee--cCceEEEEEecCCCCCCe
Q psy10918 110 GVARQEKVNISCEVDAN-PPDVKFSWTFNNS--AET-VN-------------VAQAHILR--SGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~--~~~-~~-------------~~~~~~~~--~~~~~~l~i~~~~~~~~g 170 (207)
.+.+|++++|.|...+. .....+.|++... ... +. ..+..+.. ......|.|.+++.+|+|
T Consensus 10 ~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg 89 (113)
T d1smoa_ 10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSG 89 (113)
T ss_dssp ECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred EEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCc
Confidence 45689999999987642 1223788997321 110 00 00112222 233467999999999999
Q ss_pred EEEEEEecC
Q psy10918 171 TLICWGSNK 179 (207)
Q Consensus 171 ~y~C~~~n~ 179 (207)
.|.|.+...
T Consensus 90 ~Y~Cav~~~ 98 (113)
T d1smoa_ 90 LYQCVIYQP 98 (113)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEECC
Confidence 999998654
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.86 E-value=5.4e-07 Score=50.86 Aligned_cols=71 Identities=11% Similarity=0.225 Sum_probs=44.7
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec-----------cceeEE--eecCceEEEEEecCCCCCCeEEEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN-----------VAQAHI--LRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~-----------~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
.+.+|+.++|.|.... ... .+.|++. ++....- ..+... ........|.|.+++.+|+|.|.|
T Consensus 4 sV~eG~~vtL~C~~~~-~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC 81 (96)
T d1ymmd1 4 SIQEGENATMNCSYKT-SIN-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC 81 (96)
T ss_dssp CCSSCCCCCBCCBCSS-CEE-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred eECCCCCEEEEEEEeC-Ccc-cEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence 4668999999998754 333 8999973 2221100 001111 111223569999999999999999
Q ss_pred EEecCCCC
Q psy10918 175 WGSNKIGH 182 (207)
Q Consensus 175 ~~~n~~g~ 182 (207)
.+....|.
T Consensus 82 A~~~~~g~ 89 (96)
T d1ymmd1 82 ATDTTSGT 89 (96)
T ss_dssp EEEETTSC
T ss_pred eEecCCCC
Confidence 98765543
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.86 E-value=4.3e-05 Score=43.85 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------ccc---------ccCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHN---------IAQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~---------~~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ ... ..-++. .++ ..|+|.+++
T Consensus 8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~ 87 (117)
T d1jnhb1 8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT 87 (117)
T ss_dssp CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence 4456788999999999987532 247889882 2111 100 011111 111 138899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (117)
T d1jnhb1 88 SEDSAVYSCSRG 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeec
Confidence 999999999754
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.86 E-value=2.1e-05 Score=44.67 Aligned_cols=64 Identities=20% Similarity=0.382 Sum_probs=39.8
Q ss_pred CCCcEEEEeEeccC-CCCcEEEEEECCccccccccCC-eEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQG-IIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~-~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.++|.|.+.+. |....+.|.++|.+........ ....++ .|.|......+...|+|.+...
T Consensus 18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~ 89 (102)
T d1i1ca2 18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE 89 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence 35678999999774 5445899999998765321111 111122 2555554445566899999764
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.86 E-value=0.00013 Score=42.77 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=46.1
Q ss_pred eeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec----------------cceeEEee--cCceEEEEEecCCCC
Q psy10918 109 LGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN----------------VAQAHILR--SGTLSVVAYSPNSEL 167 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~----------------~~~~~~~~--~~~~~~l~i~~~~~~ 167 (207)
....+|+.++|.|.+.+.. ....+.|++. ++....- ..+..+.. ......|.|.++..+
T Consensus 11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~ 90 (123)
T d1hxmb1 11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ 90 (123)
T ss_dssp EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc
Confidence 3456799999999998753 2237899973 2211100 01122222 234567999999999
Q ss_pred CCeEEEEEEecC
Q psy10918 168 DYGTLICWGSNK 179 (207)
Q Consensus 168 ~~g~y~C~~~n~ 179 (207)
|+|.|.|.+...
T Consensus 91 Dsa~YyCA~~~~ 102 (123)
T d1hxmb1 91 DIATYYCALWEA 102 (123)
T ss_dssp GCEEEEEEEEEE
T ss_pred cCcEEEEeeeCC
Confidence 999999998653
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.86 E-value=5.8e-05 Score=43.68 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=43.1
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCeE--ec--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGII--MT--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~~--~~--~~--~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+... .+.+.|++. |+.+. ... ..++. .+ .. .|+|.+++
T Consensus 8 g~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~ 87 (120)
T d1pg7x1 8 GPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT 87 (120)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence 3456789999999999876532 236889882 22221 000 11121 11 11 38899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtA~YYCAr~ 99 (120)
T d1pg7x1 88 SNDSAVYYCARE 99 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEeeec
Confidence 999999999864
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=7.3e-06 Score=46.64 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=39.6
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEecCCe------EEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMTNQS------LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~~------l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....+.|++||..+..... ......+++ |.|..........|+|.+.+.
T Consensus 19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 91 (102)
T d1rzfl2 19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 91 (102)
T ss_dssp HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEET
T ss_pred cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 4677999999987 465568999999988765321 111122222 443333223355799999864
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.84 E-value=0.00011 Score=42.38 Aligned_cols=68 Identities=15% Similarity=0.325 Sum_probs=43.4
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEE--CCcccc------c--cc---------cCCeEe--cC----CeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRH--NNKTLH------H--NI---------AQGIIM--TN----QSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~--~~~~~~------~--~~---------~~~~~~--~~----~~l~i~~ 66 (207)
....+.+|+++.|.|.+.+... .+.+.|+| .|+.+. . +. .-++.. ++ ..|+|.+
T Consensus 8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~ 87 (120)
T d1dlfh_ 8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT 87 (120)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence 4566789999999999987522 24788988 232211 0 00 011211 11 1488889
Q ss_pred cCCCCCeeeEEEEe
Q psy10918 67 VNRQSAGNYTCVGF 80 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~ 80 (207)
++.+|++.|+|...
T Consensus 88 L~~eDtAvYYCA~~ 101 (120)
T d1dlfh_ 88 LRAEDTGIYYCTGI 101 (120)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred ccCCCceEEEeeEe
Confidence 99999999999754
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.84 E-value=4.5e-05 Score=43.80 Aligned_cols=68 Identities=15% Similarity=0.323 Sum_probs=43.4
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------cc--------ccCCeE--ecC----CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HN--------IAQGII--MTN----QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~--------~~~~~~--~~~----~~l~i~~~~~ 69 (207)
....+.+|+++.|.|.+.+... .+.+.|++. |+.+. .. ..-++. .++ ..|+|.+++.
T Consensus 8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~ 87 (118)
T d1lo4h1 8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS 87 (118)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence 4456789999999999987532 247889883 22111 00 000111 111 1488999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|.-.
T Consensus 88 eDtA~YyCAr~ 98 (118)
T d1lo4h1 88 EDTAIYYCARG 98 (118)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEeccc
Confidence 99999999754
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=3.9e-05 Score=44.78 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=45.6
Q ss_pred eeeeeeCCcEEEEEEeccCC--CCceEEEEEcCc--eeeec-----cc---------eeEEeecCceEEEEEecCCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDANP--PDVKFSWTFNNS--AETVN-----VA---------QAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~--~~~~~-----~~---------~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
...+.+|..++|.|...... ....+.|++... ..... .. ......+.....|.|.++..+|+
T Consensus 8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 87 (118)
T d1i8lc_ 8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT 87 (118)
T ss_dssp EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence 34456888999999875432 223588998432 21100 00 00112233466899999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
|.|.|.+...
T Consensus 88 a~YyCa~~~~ 97 (118)
T d1i8lc_ 88 GLYICKVELM 97 (118)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEeEecc
Confidence 9999988753
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.83 E-value=0.00021 Score=41.62 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=44.5
Q ss_pred eeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec---------------cceeEEee--cCceEEEEEecCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN---------------VAQAHILR--SGTLSVVAYSPNSELD 168 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~---------------~~~~~~~~--~~~~~~l~i~~~~~~~ 168 (207)
....+|++++|.|...+.. ....+.|++. |+.+..- ..+..... ......|.|.+++.+|
T Consensus 11 v~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~D 90 (120)
T d1ypzf1 11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEED 90 (120)
T ss_dssp EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGG
T ss_pred EEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccc
Confidence 3456899999999876542 2226899973 2211100 01112222 2345679999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
+|.|.|.+..
T Consensus 91 sa~YyCA~~~ 100 (120)
T d1ypzf1 91 EAIYYCSYGE 100 (120)
T ss_dssp CSEEEEEECC
T ss_pred ceeEEEEEcC
Confidence 9999998764
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.83 E-value=1.5e-05 Score=45.15 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=43.9
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+..++|.|.+.++ |..+.|.|..++....... ......++. .+.|.|..-.. +.|.|+|.+.+....
T Consensus 19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~-~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~ 90 (101)
T d1kcvh2 19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLT-VSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS 90 (101)
T ss_dssp TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE-CCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred CCCeEEEEEEEEEEeCCCCEEEEecCCCccccee-eeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence 45789999999985 6678999987765422111 112233444 34576665555 467899999986543
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.83 E-value=0.0001 Score=42.52 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=44.4
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc--------------ceeE-EeecCceEEEEEecCCCCCCe
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV--------------AQAH-ILRSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~--------------~~~~-~~~~~~~~~l~i~~~~~~~~g 170 (207)
...+.+|+.++|.|..... .. .+.|++. |+....-. .... .........|.|.++..+|+|
T Consensus 9 ~~~~~~G~~v~l~C~~~~~-~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa 86 (113)
T d1j8he1 9 YLVKRTGEKVFLECVQDMD-HE-NMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTS 86 (113)
T ss_dssp EEEEETTCCEEECEEESSC-CS-EEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCE
T ss_pred EEEECCCCCEEEEEEEcCC-cc-EEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcc
Confidence 3456789999999986533 33 7889973 22211100 0001 111233457999999999999
Q ss_pred EEEEEEecC
Q psy10918 171 TLICWGSNK 179 (207)
Q Consensus 171 ~y~C~~~n~ 179 (207)
.|.|.+...
T Consensus 87 ~YyCa~~~~ 95 (113)
T d1j8he1 87 MYLCASSST 95 (113)
T ss_dssp EEEEEEECT
T ss_pred cEEeeEccC
Confidence 999998753
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.82 E-value=4.6e-05 Score=43.83 Aligned_cols=69 Identities=17% Similarity=0.363 Sum_probs=43.8
Q ss_pred CCCcccCCCcEEEEeEeccCCCC-cEEEEEEC--Cccc------cccc---------cCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV-YKVEWRHN--NKTL------HHNI---------AQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~~--~~~~------~~~~---------~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+.... +.+.|+|. |+.+ .... ..++. .++ ..|+|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~ 87 (118)
T d2fbjh1 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence 44668899999999999875432 35789873 2211 1100 11111 111 138899999
Q ss_pred CCCCeeeEEEEee
Q psy10918 69 RQSAGNYTCVGFN 81 (207)
Q Consensus 69 ~~d~g~Y~C~~~~ 81 (207)
.+|++.|+|....
T Consensus 88 ~eDtAvYYCAr~~ 100 (118)
T d2fbjh1 88 SEDTALYYCARLH 100 (118)
T ss_dssp GGGCEEEEEEEEE
T ss_pred CCcceEEEeeEec
Confidence 9999999997643
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1.9e-05 Score=43.93 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEE-EEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKV-EWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i-~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
+...+.+|+++.+.|.+.... . ++ .|..++..+.............-++|.+++..+.|.|.|.+..
T Consensus 13 ~~V~v~eg~~~vIPC~vT~P~-~-~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~ 80 (95)
T d1fltx_ 13 EIIHMTEGRELVIPCRVTSPN-I-TVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATV 80 (95)
T ss_dssp EEEEECTTSCEEECCCBSCTT-S-CCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred CEEEEeCCCCEEEEccCCCCC-c-eeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEE
Confidence 345678899999999987543 3 43 3555665554433223333455699999999999999999973
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.82 E-value=2.1e-05 Score=45.90 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=43.9
Q ss_pred CCCcccCCCcEEEEeEeccCCC--CcEEEEEEC--Ccccc------ccc----------cCCeEecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP--VYKVEWRHN--NKTLH------HNI----------AQGIIMTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~--~~~i~W~~~--~~~~~------~~~----------~~~~~~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+. ... +..+..++ ..|+|.+++
T Consensus 8 G~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~ 87 (127)
T d3cx5j1 8 GAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVT 87 (127)
T ss_dssp ECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccc
Confidence 3456789999999999987543 246889882 32221 000 01111111 238999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtAvYyCAr~ 99 (127)
T d3cx5j1 88 TEDTATYYCARS 99 (127)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEEeeee
Confidence 999999999754
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.82 E-value=2.7e-05 Score=44.09 Aligned_cols=67 Identities=13% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------cc---c--------cCCeE--ec--CC--eEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HN---I--------AQGII--MT--NQ--SLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~---~--------~~~~~--~~--~~--~l~i~~ 66 (207)
....+.+|+++.|.|.+.+... .+.+.|++. ++.+. .. . .-++. .+ .. .|+|.+
T Consensus 8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s 87 (109)
T d2ck0h1 8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN 87 (109)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence 4566889999999999987432 236888872 22111 00 0 01111 11 12 388889
Q ss_pred cCCCCCeeeEEEE
Q psy10918 67 VNRQSAGNYTCVG 79 (207)
Q Consensus 67 ~~~~d~g~Y~C~~ 79 (207)
++.+|++.|+|.-
T Consensus 88 L~~eDTAvYYCAr 100 (109)
T d2ck0h1 88 LKTEDTGIYYCVR 100 (109)
T ss_dssp CCGGGCEEEEEEE
T ss_pred CCHhHCEEEEEEE
Confidence 9999999999974
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.82 E-value=2.2e-05 Score=45.14 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=42.5
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEE--CCccc------cccc---------cCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRH--NNKTL------HHNI---------AQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~--~~~~~------~~~~---------~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.|... .+.+.|++ .|+-+ .... ..++. .++ ..|+|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~ 87 (117)
T d1mfah1 8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence 4566789999999999987532 23688887 22211 1000 00111 111 138889999
Q ss_pred CCCCeeeEEEE
Q psy10918 69 RQSAGNYTCVG 79 (207)
Q Consensus 69 ~~d~g~Y~C~~ 79 (207)
.+|++.|+|.-
T Consensus 88 ~eDtAvYYCAr 98 (117)
T d1mfah1 88 SEDSAVYYCTR 98 (117)
T ss_dssp GGGCEEEEEEE
T ss_pred CCcceEEEEec
Confidence 99999999964
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.81 E-value=3.1e-05 Score=42.31 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=42.1
Q ss_pred CcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 115 EKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 115 ~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..++|.|.+.++ |..+.+.|.++|..... ........++..+.+.+..+ .....|+|.+....
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~-~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~~ 77 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEF-DPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHDN 77 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEEC-CCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEETT
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccC-cEEeeeccCCcEEEEEEEec--CCCCEEEEEEEECC
Confidence 567999999997 55679999998875432 22233445555555555444 34557999999753
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.81 E-value=2.9e-05 Score=44.34 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--ccc------cccc---------cCCeEe--cC--C--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KTL------HHNI---------AQGIIM--TN--Q--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~~------~~~~---------~~~~~~--~~--~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|++.. +-+ .... ..++.. ++ . .|+|.+++
T Consensus 8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~ 87 (114)
T d1indh1 8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR 87 (114)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence 4566889999999999987532 2367898832 111 1100 111111 11 1 38999999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtAvYYCA~~ 99 (114)
T d1indh1 88 SEDTALYFCASH 99 (114)
T ss_dssp GGGCEEEEEECG
T ss_pred cCcccEEEECCC
Confidence 999999999753
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.80 E-value=5.2e-05 Score=43.69 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=43.5
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... .-++. .+ .. .|+|.+++
T Consensus 8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~ 87 (119)
T d1rz7h1 8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR 87 (119)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence 4556789999999999987542 236889883 2111 1000 01221 11 12 38899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (119)
T d1rz7h1 88 SEDTAVYYCAAD 99 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred cccceEEEEeec
Confidence 999999999754
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.80 E-value=2.7e-05 Score=45.28 Aligned_cols=68 Identities=12% Similarity=0.246 Sum_probs=43.4
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. ++.+ .... .-++. .+ . ..|+|.+++
T Consensus 7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~ 86 (124)
T d1zvya1 7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK 86 (124)
T ss_dssp CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence 3456789999999999987532 237889983 2211 1100 01111 11 1 238888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 87 ~eDtAvYYCAr~ 98 (124)
T d1zvya1 87 SEDTAIYTCGAT 98 (124)
T ss_dssp GGGCEEEEEEEC
T ss_pred CCcceEEEEeec
Confidence 999999999764
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=6.8e-06 Score=46.87 Aligned_cols=69 Identities=26% Similarity=0.315 Sum_probs=42.5
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+..+.|.|.+.++ |..+.|.|..++..............++. .+.|.+..-.+ ....|+|.+.+..+.
T Consensus 19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~ 91 (103)
T d1c5ch2 19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSN 91 (103)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGT
T ss_pred CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCC
Confidence 45679999999986 55679999776644222111122223333 24566655444 346799999986554
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.79 E-value=3e-05 Score=45.16 Aligned_cols=68 Identities=10% Similarity=0.255 Sum_probs=43.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCCC-cEEEEEEC--Cccc------cccc---------cCCeE--ec--CC--eEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPV-YKVEWRHN--NKTL------HHNI---------AQGII--MT--NQ--SLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~~--~l~i~~~ 67 (207)
.....+.+|+++.|.|.+.+.... +.+.|++. |+.+ .... ..++. .+ .. .|+|.++
T Consensus 7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L 86 (127)
T d1n0xh1 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (127)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence 455678899999999999875332 36889882 2221 1100 01111 11 12 3888899
Q ss_pred CCCCCeeeEEEE
Q psy10918 68 NRQSAGNYTCVG 79 (207)
Q Consensus 68 ~~~d~g~Y~C~~ 79 (207)
+.+|++.|+|.-
T Consensus 87 ~~eDtAvYYCAR 98 (127)
T d1n0xh1 87 RSADTAVYYCAR 98 (127)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCCceEEEEEe
Confidence 999999999964
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.79 E-value=2.9e-05 Score=44.75 Aligned_cols=68 Identities=12% Similarity=0.249 Sum_probs=43.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeEe--c--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGIIM--T--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~~--~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ .... .-++.. + . ..|+|.+++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~ 87 (119)
T d1eapb1 8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT 87 (119)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence 4456789999999999987542 236889873 2211 1100 001111 1 1 248899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (119)
T d1eapb1 88 SEDSAVYFCKRS 99 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred CCcceEEEEEEe
Confidence 999999999643
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.78 E-value=0.00015 Score=41.81 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=44.7
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCce--eeec----c----------ceeEE-eecCceEEEEEecCCCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA--ETVN----V----------AQAHI-LRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~~~----~----------~~~~~-~~~~~~~~l~i~~~~~~~~ 169 (207)
....+.+|+.++|.|..... .. .+.|++.... ...- . .+... ........|.|.+++.+|+
T Consensus 9 ~~~~~~~G~~v~l~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 86 (113)
T d1nfdb1 9 RHIIKEKGGRSVLTCIPISG-HS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS 86 (113)
T ss_dssp SEEEEETTCCCEEEEECCTT-CC-EEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGC
T ss_pred CEEEEeCCCCEEEEEEeCCC-CC-EEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCc
Confidence 33456789999999986543 33 8999974221 1100 0 00001 1122345799999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
|.|.|.+...
T Consensus 87 a~YyCa~~~~ 96 (113)
T d1nfdb1 87 AMYFCASSLR 96 (113)
T ss_dssp EEECEEEESS
T ss_pred eeEEEEeecC
Confidence 9999987643
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.78 E-value=1.6e-05 Score=45.44 Aligned_cols=67 Identities=13% Similarity=0.311 Sum_probs=42.8
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... ..++. .+. ..|+|.+++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~ 87 (116)
T d1mjuh1 8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT 87 (116)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence 4567889999999999987532 236889882 2211 1000 01111 111 148888999
Q ss_pred CCCCeeeEEEE
Q psy10918 69 RQSAGNYTCVG 79 (207)
Q Consensus 69 ~~d~g~Y~C~~ 79 (207)
.+|++.|+|..
T Consensus 88 ~eDtAvYYCAr 98 (116)
T d1mjuh1 88 SDDSAVYYCAN 98 (116)
T ss_dssp GGGCEEEEEEE
T ss_pred CCCceEEEEcc
Confidence 99999999974
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.78 E-value=5.1e-05 Score=43.91 Aligned_cols=68 Identities=15% Similarity=0.355 Sum_probs=43.4
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeEe--c--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGIIM--T--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~~--~--~~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... ..++.. + .. .|+|.+++
T Consensus 8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~ 87 (123)
T d1mqkh_ 8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK 87 (123)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence 4567889999999999987532 236789882 2211 1100 111111 1 11 38899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtAvYYCAr~ 99 (123)
T d1mqkh_ 88 SEDTAMYYCVRH 99 (123)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCcccceeEEec
Confidence 999999999754
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.77 E-value=4.2e-05 Score=44.11 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCCcccCCCcEEEEeEeccCCCC-cEEEEEE--CCccc------c---ccc----------cCCeEecC----CeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV-YKVEWRH--NNKTL------H---HNI----------AQGIIMTN----QSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~--~~~~~------~---~~~----------~~~~~~~~----~~l~i~~ 66 (207)
....+.+|+++.|.|.+.+.... +.+.|++ .|+.+ . ... +..+..++ ..|+|.+
T Consensus 8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~ 87 (121)
T d1nfdf1 8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR 87 (121)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence 45678899999999999875432 3678988 22221 1 000 00111111 1399999
Q ss_pred cCCCCCeeeEEEEe
Q psy10918 67 VNRQSAGNYTCVGF 80 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~ 80 (207)
++.+|++.|+|...
T Consensus 88 L~~eDTAvYYCAr~ 101 (121)
T d1nfdf1 88 LRVDDTAIYYCTRA 101 (121)
T ss_dssp CCGGGCEECEEEEE
T ss_pred cCCCcceEEEEecc
Confidence 99999999999754
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2.9e-05 Score=44.50 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=40.4
Q ss_pred CCCcEEEEeEeccC-CCCcEEEEEECCccccccccC---------CeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ---------GIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+. |....|+|.+||..+...... ......+.|.|..-.......|+|.+.+.
T Consensus 19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~ 92 (107)
T d1c5cl2 19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 92 (107)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECT
T ss_pred cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 36679999999774 555689999999876542111 01111223656554434455899999864
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.77 E-value=3.7e-05 Score=44.74 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. ++.+ .... ..++. .++ ..|+|.+++
T Consensus 8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~ 87 (126)
T d1dfbh1 8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR 87 (126)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence 4456789999999999987542 236889882 2211 1100 01111 111 238889999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtavYYCAr~ 99 (126)
T d1dfbh1 88 AEDMALYYCVKG 99 (126)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCcceEEEEEec
Confidence 999999999754
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.75 E-value=5.6e-05 Score=43.63 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=45.0
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeeec-----cc---------eeEEe-ecCceEEEEEecCCCCCCe
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETVN-----VA---------QAHIL-RSGTLSVVAYSPNSELDYG 170 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~-----~~---------~~~~~-~~~~~~~l~i~~~~~~~~g 170 (207)
...+.+|+.++|.|..... .. .+.|++... ....- .. ..... .......|.|.++..+|+|
T Consensus 7 ~~~~~~G~svtL~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa 84 (112)
T d2cdeb1 7 YLVIGTGKKITLECSQTMG-HD-KMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTS 84 (112)
T ss_dssp EEEEETTCCBCCEEEETTC-CS-EEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCS
T ss_pred EEEECCCCCEEEEEEEeCC-cc-cEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccc
Confidence 3456789999999987643 33 899998422 11100 00 00111 1122456899999999999
Q ss_pred EEEEEEecCCC
Q psy10918 171 TLICWGSNKIG 181 (207)
Q Consensus 171 ~y~C~~~n~~g 181 (207)
.|.|.++...+
T Consensus 85 ~YyCA~~~~~~ 95 (112)
T d2cdeb1 85 QYLCASSENIG 95 (112)
T ss_dssp EEEEEEECSSS
T ss_pred cEEEEEecCCC
Confidence 99999876543
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.75 E-value=1.5e-05 Score=47.31 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=41.9
Q ss_pred cccCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc---C----------CeEecCCeEEEEecCCCCCe-eeEEEEe
Q psy10918 16 HIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA---Q----------GIIMTNQSLVLQRVNRQSAG-NYTCVGF 80 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~---~----------~~~~~~~~l~i~~~~~~d~g-~Y~C~~~ 80 (207)
.+..+..++|.|.+.+ +|....|+|++||..+..... . ......+.|.|......+.| .|+|.+.
T Consensus 16 e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~ 95 (127)
T d1ogae2 16 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ 95 (127)
T ss_dssp HHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred HhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEE
Confidence 3445677999999977 455568999999987754210 0 01111134666554444545 7999998
Q ss_pred ee
Q psy10918 81 NI 82 (207)
Q Consensus 81 ~~ 82 (207)
+.
T Consensus 96 H~ 97 (127)
T d1ogae2 96 FY 97 (127)
T ss_dssp EC
T ss_pred EC
Confidence 64
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.74 E-value=4.6e-05 Score=44.19 Aligned_cols=68 Identities=13% Similarity=0.289 Sum_probs=43.5
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCeEe--c--CC--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGIIM--T--NQ--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~~~--~--~~--~l~i~~~~ 68 (207)
....+.+|++++|.|.+.+... .+.+.|+|. |+.+. ... ..++.. + .. .|+|.+++
T Consensus 8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~ 87 (121)
T d1j05b_ 8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT 87 (121)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence 4566889999999999876432 236889883 22211 000 011211 1 12 38899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtAvYYCAr~ 99 (121)
T d1j05b_ 88 SEDTAVYYCAPF 99 (121)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCcceEEEeEee
Confidence 999999999754
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.74 E-value=0.0004 Score=39.71 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=45.9
Q ss_pred eeeeeCCcEEEEEEeccCC-CCceEEEEEc--Cce---eee-cc----------ceeEEee--cCceEEEEEecCCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANP-PDVKFSWTFN--NSA---ETV-NV----------AQAHILR--SGTLSVVAYSPNSELDY 169 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~---~~~-~~----------~~~~~~~--~~~~~~l~i~~~~~~~~ 169 (207)
..+.+|++++|.|...+.. ....+.|++. ++. +.. .. .+..+.. ......|+|.+++.+|+
T Consensus 5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs 84 (110)
T d1u9ka_ 5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS 84 (110)
T ss_dssp EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence 3467899999999987532 2237889983 221 100 00 0112222 23456799999999999
Q ss_pred eEEEEEEecCC
Q psy10918 170 GTLICWGSNKI 180 (207)
Q Consensus 170 g~y~C~~~n~~ 180 (207)
|.|.|......
T Consensus 85 a~YyCa~~~~~ 95 (110)
T d1u9ka_ 85 GLYRCVIYHPP 95 (110)
T ss_dssp EEEEEEEECTT
T ss_pred EEEEEEEeCCC
Confidence 99999986543
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.74 E-value=3.7e-05 Score=44.83 Aligned_cols=68 Identities=18% Similarity=0.359 Sum_probs=43.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCC-cEEEEEEC--Ccccc------cc---------ccCCeE--ecC--C--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV-YKVEWRHN--NKTLH------HN---------IAQGII--MTN--Q--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~-~~i~W~~~--~~~~~------~~---------~~~~~~--~~~--~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+.... +.+.|++. ++-+. .. -..++. .++ . .|+|.+++
T Consensus 8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~ 87 (128)
T d2nxyd1 8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR 87 (128)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence 45567899999999999875432 35788872 21110 00 011111 111 2 38888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTA~YYCAr~ 99 (128)
T d2nxyd1 88 SDDTAVYFCAGV 99 (128)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccCceEEEEeEE
Confidence 999999999865
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.74 E-value=6.4e-05 Score=43.77 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+. ... ..++. .++ ..|+|.+++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~ 87 (127)
T d2fx7h1 8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR 87 (127)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence 4456788999999999987532 236889872 22111 000 01111 111 238888999
Q ss_pred CCCCeeeEEEEeeeC
Q psy10918 69 RQSAGNYTCVGFNIE 83 (207)
Q Consensus 69 ~~d~g~Y~C~~~~~~ 83 (207)
.+|++.|+|.-....
T Consensus 88 ~eDTavYYCAR~~~~ 102 (127)
T d2fx7h1 88 PEDTAVYYCAREGTT 102 (127)
T ss_dssp GGGCEEEEEEEEEES
T ss_pred cccceEEEEeecccc
Confidence 999999999865443
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.73 E-value=5.2e-05 Score=44.34 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=44.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCeE--ecC--C--eEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGII--MTN--Q--SLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~~--~~~--~--~l~i~~~ 67 (207)
.....+.+|+++.|.|.+.+... .+.+.|+|. |+.+. ... ..++. .++ . .|+|.++
T Consensus 6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L 85 (130)
T d1rhhb1 6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL 85 (130)
T ss_dssp CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence 34556789999999999987532 236889882 22211 000 01111 111 1 3888899
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 86 ~~eDtAvYyCAr~ 98 (130)
T d1rhhb1 86 RSDDTAVYYCARD 98 (130)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCCcEEEEEEee
Confidence 9999999999765
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.72 E-value=4.3e-05 Score=44.42 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCe--EecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGI--IMTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~--~~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... .-++ ..++ ..|+|.+++
T Consensus 7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~ 86 (126)
T d1lmka1 7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT 86 (126)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence 4567789999999999987532 236889882 2221 1100 1111 1111 248899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 87 ~eDTAvYYCAr~ 98 (126)
T d1lmka1 87 SEDSAVYYCARG 98 (126)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeec
Confidence 999999999753
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.72 E-value=6.2e-05 Score=43.87 Aligned_cols=67 Identities=9% Similarity=0.244 Sum_probs=41.9
Q ss_pred CCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--CC--eEEEEecCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--NQ--SLVLQRVNR 69 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~~--~l~i~~~~~ 69 (207)
...+.+|+++.|.|.+.+... .+.+.|+|. ++.+ .... ..++. .+ .. .|+|.+++.
T Consensus 8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~ 87 (126)
T d1rjca1 8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP 87 (126)
T ss_dssp CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence 456789999999999987432 236889883 2221 1110 01121 11 12 389999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|...
T Consensus 88 eDTAvYYCAr~ 98 (126)
T d1rjca1 88 EDTAMYYCAAD 98 (126)
T ss_dssp GGCEEEEEEEC
T ss_pred ccCceeEEEee
Confidence 99999999754
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.72 E-value=3e-05 Score=45.26 Aligned_cols=69 Identities=12% Similarity=0.261 Sum_probs=43.6
Q ss_pred cCCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------c-cc--------ccCCe--EecC----CeEEEEec
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------H-HN--------IAQGI--IMTN----QSLVLQRV 67 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~-~~--------~~~~~--~~~~----~~l~i~~~ 67 (207)
.....+.+|++++|.|.+.+... .+.+.|++. |+.+ . .. ...++ ..++ ..|+|.++
T Consensus 7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL 86 (125)
T d1rihh1 7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL 86 (125)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence 35567789999999999987532 236888872 2211 0 00 00111 1111 13888899
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 87 ~~eDtAvYYCAR~ 99 (125)
T d1rihh1 87 TSEDSAVYYCARE 99 (125)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcccceEEEEeee
Confidence 9999999999754
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.71 E-value=2e-05 Score=43.07 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=36.2
Q ss_pred CcEEEEeEeccC-CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 21 SDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 21 ~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
+.++|.|.+.+. |....+.|.++|.............++....+.-.+......|+|.+.+
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H 75 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQH 75 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEE
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEE
Confidence 446899999875 5556899999987665422111111222222333333455579999875
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.71 E-value=0.00011 Score=42.36 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=43.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeec----ccee----------EE-eecCceEEEEEecCCCCCCeE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVN----VAQA----------HI-LRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~----~~~~----------~~-~~~~~~~~l~i~~~~~~~~g~ 171 (207)
..+.+|++++|.|..... .. .+.|++. ++....- .... .. ........|.|.++..+|+|.
T Consensus 9 ~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav 86 (112)
T d2bnub1 9 QVLKTGQSMTLQCAQDMN-HE-YMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV 86 (112)
T ss_dssp EEEETTCCEEEEEEESSC-CS-EEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred EEECCCCCEEEEEEEECC-cc-ceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence 346789999999987643 33 8999973 2222110 0000 00 011223469999999999999
Q ss_pred EEEEEec
Q psy10918 172 LICWGSN 178 (207)
Q Consensus 172 y~C~~~n 178 (207)
|.|.+..
T Consensus 87 YyCA~~~ 93 (112)
T d2bnub1 87 YFCASSY 93 (112)
T ss_dssp EEEEEEC
T ss_pred EEEeecC
Confidence 9998764
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.71 E-value=4.1e-05 Score=44.33 Aligned_cols=68 Identities=13% Similarity=0.336 Sum_probs=43.5
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ecC--C--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MTN--Q--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~~--~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ .... .-++. .++ . .|.|.+++
T Consensus 8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~ 87 (124)
T d1yedb1 8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK 87 (124)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence 4556789999999999987533 236889882 2211 1100 11111 111 2 38899999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAR~ 99 (124)
T d1yedb1 88 SEDSAVYFCTRW 99 (124)
T ss_dssp GGGCEEEEEEEC
T ss_pred CCcceEEEeccc
Confidence 999999999754
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.71 E-value=3.9e-05 Score=44.48 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeEe--c--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGIIM--T--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~~--~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|++. |+-+ .... .-++.. + . ..|+|.+++
T Consensus 8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~ 87 (122)
T d1bz7b1 8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR 87 (122)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence 3456788999999999987532 236889882 2111 1000 111111 1 1 248888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (122)
T d1bz7b1 88 SEDTAIYYCTRG 99 (122)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccCceEEEeecC
Confidence 999999999754
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.70 E-value=4.6e-05 Score=44.10 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCe--EecC----CeEEEEecCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGI--IMTN----QSLVLQRVNR 69 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~--~~~~----~~l~i~~~~~ 69 (207)
...+.+|+++.|.|.+.+... .+.+.|+|. |+.+ .... ..++ ..++ ..|+|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~ 88 (121)
T d1ol0a_ 9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA 88 (121)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence 456788999999999987532 236889873 2221 1100 0111 1111 1499999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|...
T Consensus 89 eDtAvYYCAr~ 99 (121)
T d1ol0a_ 89 EDTAVYYCARE 99 (121)
T ss_dssp GGCEEEEEEEC
T ss_pred ccceEEEEEEe
Confidence 99999999754
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.70 E-value=9.2e-05 Score=41.82 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=40.1
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEec-----CCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMT-----NQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..++.++|.|.+.+ +|....|.|.+++.............+ .+.|.|..-.. +.+.|+|.+.+..
T Consensus 18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~ 88 (101)
T d1kcvh2 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPK 88 (101)
T ss_dssp TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGG
T ss_pred cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCC
Confidence 35788999999987 566669999887754322111111111 12355554433 4678999998753
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.70 E-value=2.3e-05 Score=45.01 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=43.5
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEE--CCcccc------ccc----------cCCeEecC----CeEEEEecCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRH--NNKTLH------HNI----------AQGIIMTN----QSLVLQRVNR 69 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~--~~~~~~------~~~----------~~~~~~~~----~~l~i~~~~~ 69 (207)
....+.+|++++|.|.+.+... .+.+.|+| .|+.+. ... +..+..+. ..|+|.+++.
T Consensus 8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~ 87 (116)
T d1fn4b1 8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT 87 (116)
T ss_dssp CCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCC
T ss_pred CCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCC
Confidence 3456789999999999987432 24788998 222221 100 00111111 1388999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|++.|+|...
T Consensus 88 eDTAvYyCAr~ 98 (116)
T d1fn4b1 88 DDTGTYYCTRD 98 (116)
T ss_dssp CCCEEEEEEEE
T ss_pred CCCEEEEEEee
Confidence 99999999754
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.69 E-value=0.00014 Score=40.47 Aligned_cols=62 Identities=19% Similarity=0.397 Sum_probs=38.0
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccccC--Ce-EecCCe---EEEEecCCCCCeeeEEEEee
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ--GI-IMTNQS---LVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~--~~-~~~~~~---l~i~~~~~~d~g~Y~C~~~~ 81 (207)
++.++|.|.+.+ +|....++|.++|..+...... .. ...+++ .....+...+...|+|.+..
T Consensus 15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H 83 (94)
T d1hyrc1 15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEH 83 (94)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEE
Confidence 456899999987 4666699999999877642111 11 111222 11123334556689999975
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.68 E-value=0.00011 Score=43.35 Aligned_cols=68 Identities=19% Similarity=0.388 Sum_probs=42.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCC---cEEEEEEC--Ccccc------cc--------ccCCeE--ecC----CeEEEEec
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV---YKVEWRHN--NKTLH------HN--------IAQGII--MTN----QSLVLQRV 67 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~---~~i~W~~~--~~~~~------~~--------~~~~~~--~~~----~~l~i~~~ 67 (207)
....+.+|++++|.|.+.+.... ..+.|++. ++.+. .. -..++. .++ ..|+|.++
T Consensus 8 g~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l 87 (132)
T d1tjgh1 8 GPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV 87 (132)
T ss_dssp CCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence 34668899999999998764321 25789973 21111 00 011221 111 13899999
Q ss_pred CCCCCeeeEEEEe
Q psy10918 68 NRQSAGNYTCVGF 80 (207)
Q Consensus 68 ~~~d~g~Y~C~~~ 80 (207)
+.+|++.|+|...
T Consensus 88 ~~eDtAvYYCAr~ 100 (132)
T d1tjgh1 88 SPVDTATYFCAHR 100 (132)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcccceEEEEEEe
Confidence 9999999999865
|
| >d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=2.8e-05 Score=44.19 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=41.5
Q ss_pred eeeCCcEEEEEEeccCCC---CceEEEEEcCceeeecccee-EEeecCc---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDANPP---DVKFSWTFNNSAETVNVAQA-HILRSGT---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+..+..++|.|.+.+..+ .+.+.|.+++.......... ....++. .+.|.+..-.+.....|+|.+.+...
T Consensus 13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l 90 (103)
T d1fp5a1 13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL 90 (103)
T ss_dssp HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence 345678899999998643 24677888776543221111 2222333 23444443344456789999998543
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.68 E-value=5.3e-05 Score=43.60 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=43.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------ccc---------ccCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHN---------IAQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~---------~~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+-+ ... ...++. .++ ..|+|.+++
T Consensus 8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~ 87 (120)
T d1ad9b1 8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR 87 (120)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence 4566889999999999987432 236889873 2211 100 011111 111 238888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (120)
T d1ad9b1 88 SEDTAFYFCARE 99 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEEEc
Confidence 999999999754
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00028 Score=36.86 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=40.6
Q ss_pred eeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 112 ARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..|..+.|+|....... ...-.|.|+|+.+..... .+....+.+.. .+++|.|.|...+
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~------~~~~tey~V~~--~D~SGeY~CVFl~ 69 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL------PGQKTEFKVDS--DDQWGEYSCVFLP 69 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC------CCSEEEEEECG--GGCCEEEEEEEES
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC------CCCceEEEEec--CCCCceEEEEEcC
Confidence 46788999999887643 237899999987653321 12233455654 7799999999764
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.68 E-value=4.9e-05 Score=44.39 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=42.8
Q ss_pred eCCcEEEEEEeccCCC---CceEEEEEcCceeeecc-ceeEEeecCce---EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDANPP---DVKFSWTFNNSAETVNV-AQAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..+.|.|.+.+..+ .+.+.|++++....... .......++.. +.|.|..-.+.....|+|.|.+..
T Consensus 31 ~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~ 105 (119)
T d1igtb3 31 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD 105 (119)
T ss_dssp TTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred cCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence 4678999999988532 46889999887654322 12233344443 344444333345678999999855
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.67 E-value=0.00014 Score=41.54 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=40.6
Q ss_pred CcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-CeEecCC------eEEEEecCCCC-CeeeEEEEeeeC
Q psy10918 15 DHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQ------SLVLQRVNRQS-AGNYTCVGFNIE 83 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~------~l~i~~~~~~d-~g~Y~C~~~~~~ 83 (207)
..+..+..++|.|.+.+ +|....+.|.+||..+...... .....++ .|.+ ..++ ...|+|.+.+..
T Consensus 19 ~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v---~~~~w~~~ytC~V~H~s 93 (107)
T d1hxmb2 19 AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV---PEKSLDKEHRCIVRHEN 93 (107)
T ss_dssp GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE---CTGGGGSCEEEEEEETT
T ss_pred HHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEE---ecccCCCeEEEEEEECC
Confidence 34556778999999977 5666689999999877542111 1111122 2333 3333 337999998654
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.66 E-value=4.6e-05 Score=43.29 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=40.7
Q ss_pred eCCcEEEEEEeccC-CC--CceEEEEEcCceeeeccce-eEEeecCce---EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PP--DVKFSWTFNNSAETVNVAQ-AHILRSGTL---SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~--~~~~~W~~~~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+..+.|.|.+.+. |. .+.+.|.++|......... .....++.. +.|.+..-.+.....|+|.|.+..
T Consensus 15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~ 89 (103)
T d1i1ca1 15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA 89 (103)
T ss_dssp SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence 45678999999875 32 3689999988764332211 122233332 334443333334557999999855
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.66 E-value=0.00013 Score=41.30 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=40.8
Q ss_pred cCCCcEEEEeEeccC-CC-CcEEEEEECCccccccccCCeEecC------CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 18 KEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLHHNIAQGIIMTN------QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..++.++|.|.+.+. |. ...+.|.+++..+...........+ +.|.|..........|+|.+.+..
T Consensus 17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s 90 (102)
T d2fbjh2 17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDS 90 (102)
T ss_dssp SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETT
T ss_pred cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECC
Confidence 347789999999884 44 3478899988766532211112222 235555554445567999998643
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.66 E-value=8.5e-05 Score=43.31 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeE--ec--C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGII--MT--N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~--~~--~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... ...+.|++. ++.+ .... ..++. .+ . ..|+|.+++
T Consensus 8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~ 87 (127)
T d2fb4h1 8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLR 87 (127)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeee
Confidence 4456789999999999987532 236888882 2211 1100 01111 11 1 238889999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTA~YYCAr~ 99 (127)
T d2fb4h1 88 PEDTGVYFCARD 99 (127)
T ss_dssp GGGCEEEEEEEE
T ss_pred ecceeEEEEEEe
Confidence 999999999754
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.65 E-value=0.00012 Score=39.65 Aligned_cols=54 Identities=19% Similarity=0.402 Sum_probs=38.0
Q ss_pred eeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC-CCCeEEEEEEec
Q psy10918 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE-LDYGTLICWGSN 178 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~n 178 (207)
..|..|.|+|...+. . .|.|.+++..+. ......|.+.+.+. +++|.|.|...+
T Consensus 12 ISGTtV~LTCP~~~~--~-~I~Wkkn~~~i~----------g~~~~~L~L~~FSE~e~SGyY~C~~~~ 66 (100)
T d1jbja2 12 ISGTSVELTCPLDSD--E-NLKWEKNGQELP----------QKHDKHLVLQDFSEVEDSGYYVCYTPA 66 (100)
T ss_dssp EETTEEEEECSSCCC--T-TCEEEETTEEEC----------SCCCSEEEEESCCTTTSCEEEEEECSS
T ss_pred EeCCEEEEECCCCCC--C-ceEEeeccccCC----------CCCCcEEEEccccccccCcceEEecCC
Confidence 478999999986643 3 799999887643 11122466667655 799999997544
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.64 E-value=7.9e-05 Score=43.60 Aligned_cols=68 Identities=12% Similarity=0.329 Sum_probs=43.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEECC--cc---c---c------cc--------ccCCeEe--c--C--CeEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNN--KT---L---H------HN--------IAQGIIM--T--N--QSLV 63 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~--~~---~---~------~~--------~~~~~~~--~--~--~~l~ 63 (207)
....+.+|+++.|.|.+.+... .+.+.|+|.. +. + . .. ..-++.. + . ..|+
T Consensus 8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~ 87 (127)
T d1i3ua_ 8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ 87 (127)
T ss_dssp SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence 3456789999999999987532 2368899832 11 1 0 00 0001111 1 1 2388
Q ss_pred EEecCCCCCeeeEEEEe
Q psy10918 64 LQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~ 80 (207)
|.+++.+|++.|+|...
T Consensus 88 i~~l~~eDtAvYYCAr~ 104 (127)
T d1i3ua_ 88 MNSLKPEDTAVYYCAAK 104 (127)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred eecccccceeEEEEEEE
Confidence 99999999999999865
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.64 E-value=3.9e-05 Score=44.55 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCe--EecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGI--IMTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~--~~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+. ... .-++ ..++ ..|+|.+++
T Consensus 8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~ 87 (124)
T d2b1hh1 8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK 87 (124)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence 4456789999999999987543 235789882 21111 000 0111 1111 148888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTA~YYCAR~ 99 (124)
T d2b1hh1 88 PSDTALYYCARL 99 (124)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEEEeec
Confidence 999999999643
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.63 E-value=4.7e-05 Score=44.55 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=43.1
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------ccc---------cCCeE--ecC--C--eEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------HNI---------AQGII--MTN--Q--SLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~~~---------~~~~~--~~~--~--~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|++. ++-+. ... ..++. .++ . .|+|.+++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~ 87 (130)
T d1rzga1 8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR 87 (130)
T ss_dssp CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence 4556788999999999987532 236889882 22111 000 01111 111 2 38888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDtA~YYCAr~ 99 (130)
T d1rzga1 88 SEDTAVFYCASP 99 (130)
T ss_dssp GGGCEEEEEEEC
T ss_pred CCccEEEEEEEe
Confidence 999999999854
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.63 E-value=0.00013 Score=42.72 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc-------cc--------ccCCeE--ecC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH-------HN--------IAQGII--MTN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~-------~~--------~~~~~~--~~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. ++-+. .. ...++. .++ ..|+|.+++
T Consensus 7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~ 86 (133)
T d1rzfh1 7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR 86 (133)
T ss_dssp CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence 4456889999999999987533 236889882 21111 00 011111 111 138888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 87 ~eDtA~YYCAr~ 98 (133)
T d1rzfh1 87 SDDTAVYYCASN 98 (133)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCCEEEEeeec
Confidence 999999999764
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.63 E-value=8.8e-05 Score=42.89 Aligned_cols=68 Identities=13% Similarity=0.297 Sum_probs=43.6
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc------c--cc---------cCCeEe--c--C--CeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH------H--NI---------AQGIIM--T--N--QSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~------~--~~---------~~~~~~--~--~--~~l~i~~ 66 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. |+.+. . +. ..++.. + . ..|+|.+
T Consensus 8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s 87 (122)
T d1q9rb1 8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT 87 (122)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence 4567889999999999987532 236889973 22211 0 00 011111 1 1 1388899
Q ss_pred cCCCCCeeeEEEEe
Q psy10918 67 VNRQSAGNYTCVGF 80 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~ 80 (207)
++.+|++.|+|...
T Consensus 88 L~~eDTAvYYCar~ 101 (122)
T d1q9rb1 88 LRAEDSATYYCARD 101 (122)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred eccCcceEEEEEec
Confidence 99999999999864
|
| >d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=4.7e-06 Score=47.37 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=42.5
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCC---CCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL---DYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~---~~g~y~C~~~n~~g 181 (207)
+..+..++|.|.+.+. |..+.|.|++++....... ......++..+......+..+ ....|+|.|.+...
T Consensus 15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~-~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~ 89 (101)
T d1ow0a1 15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG-PPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES 89 (101)
T ss_dssp HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEEC-CCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred HccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeec-ceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence 4567899999999985 4567999998775432211 112223344333333344443 35689999997643
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.61 E-value=5.7e-05 Score=43.85 Aligned_cols=68 Identities=10% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Cccc------cccc---------cCCeEe--cC----CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTL------HHNI---------AQGIIM--TN----QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~------~~~~---------~~~~~~--~~----~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+... .+.+.|+|. ++.+ .... ..++.. ++ ..|+|.+++
T Consensus 8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~ 87 (125)
T d1op3h1 8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR 87 (125)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence 4466789999999999987432 236889883 2221 1100 111211 11 238888999
Q ss_pred CCCCeeeEEEEe
Q psy10918 69 RQSAGNYTCVGF 80 (207)
Q Consensus 69 ~~d~g~Y~C~~~ 80 (207)
.+|++.|+|...
T Consensus 88 ~eDTAvYYCAr~ 99 (125)
T d1op3h1 88 VEDTAIYYCARK 99 (125)
T ss_dssp GGGCEEEEEEEE
T ss_pred CccceeEeEeec
Confidence 999999999754
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.60 E-value=1.1e-05 Score=46.09 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=40.7
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCe-EecCCe------EEEEecCCCCCeeeEEEEeeeC
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGI-IMTNQS------LVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~------l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.++.++|.|.+.+ +|....|.|++||..+........ ...+++ |.|......+...|+|.+.+..
T Consensus 19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~ 91 (104)
T d1nfde2 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEG 91 (104)
T ss_dssp HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECC
Confidence 3567899999987 455558999999988764322111 111222 4444333345568999998653
|
| >d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=5.9e-05 Score=42.97 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=42.3
Q ss_pred eeCCcEEEEEEeccCCC---CceEEEEEcCceeeecc-ceeEEeecCceE---EEEEecCCCCCCeEEEEEEecCCC
Q psy10918 112 ARQEKVNISCEVDANPP---DVKFSWTFNNSAETVNV-AQAHILRSGTLS---VVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~---~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..++.+.|.|.+.+..+ .+.+.|.+++....... .......++..+ .|.|..-.+.....|+|.+.+...
T Consensus 16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l 92 (105)
T d1l6xa1 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL 92 (105)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence 35678999999998533 25788999887543221 112223344433 344433333455689999998654
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.59 E-value=0.00038 Score=40.26 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=43.7
Q ss_pred eeeCCcEEEEEEeccCCC---CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEVDANPP---DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
+.+|+++.|.|.+.|..- ...+.|++. ++.+..- ..+..+..+ .....|.|.+++.+|
T Consensus 12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eD 91 (120)
T d2agjh1 12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVD 91 (120)
T ss_dssp CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGG
T ss_pred ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeecc
Confidence 567999999999877532 126789974 3222110 011222222 234579999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
++.|.|....
T Consensus 92 sAvYyCAr~~ 101 (120)
T d2agjh1 92 TATYYCARTS 101 (120)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEeeEecC
Confidence 9999997554
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.58 E-value=9.6e-05 Score=43.30 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=43.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC-CcEEEEEEC--Ccccc--------ccc---------cCCeEe--c--C--CeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP-VYKVEWRHN--NKTLH--------HNI---------AQGIIM--T--N--QSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~--~~~~~--------~~~---------~~~~~~--~--~--~~l~i~~ 66 (207)
....+.+|++++|.|.+.+... .+.+.|++. |+.+. .+. ..++.. + . ..|+|.+
T Consensus 8 G~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~ 87 (131)
T d3c2ah1 8 GGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNS 87 (131)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred CCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceec
Confidence 4567889999999999987432 236888872 22110 000 011111 1 1 2388889
Q ss_pred cCCCCCeeeEEEEe
Q psy10918 67 VNRQSAGNYTCVGF 80 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~ 80 (207)
++.+|++.|+|...
T Consensus 88 L~~eDTAvYYCAR~ 101 (131)
T d3c2ah1 88 LKTEDTAVYSCTTD 101 (131)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cccCCceEEEEecc
Confidence 99999999999765
|
| >d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.55 E-value=4.4e-05 Score=43.99 Aligned_cols=67 Identities=13% Similarity=0.282 Sum_probs=41.3
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCC---CeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD---YGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~---~g~y~C~~~n~~ 180 (207)
.+..++|.|.+.+. |..+.|.|.+++...... .......++..+......+..++ ...|+|.|.+..
T Consensus 26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 96 (111)
T d1pfca_ 26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKN-TPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA 96 (111)
T ss_dssp CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEE-EEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEE-cccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence 35678999999986 556799998876532211 11122334444444444555554 456999999854
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.54 E-value=0.00073 Score=38.84 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELDY 169 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~~ 169 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++.- ..+..+..+ .+...|.|.+++.+|+
T Consensus 10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt 89 (119)
T d1kxvc_ 10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT 89 (119)
T ss_dssp EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence 3568999999999988643 346889874 2222110 012333333 2345799999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
+.|.|.....
T Consensus 90 A~YYCAr~~~ 99 (119)
T d1kxvc_ 90 AMYYCKPSLR 99 (119)
T ss_dssp EEEEEEEEES
T ss_pred ceEeeeeccc
Confidence 9999976543
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0001 Score=39.39 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=39.2
Q ss_pred eeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC-CCCeEEEEEEec
Q psy10918 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE-LDYGTLICWGSN 178 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~n 178 (207)
..|..+.|+|.- .... .+.|.+++.......+......+. ..|.+.+.+. +++|.|.|.+..
T Consensus 8 ISGTtV~LTCP~--~~~~-~i~W~~n~~~~~~~~~~~~~~~~~--~~l~L~dfSe~e~sGyY~C~~~~ 70 (91)
T d1xiwa_ 8 ISGTTVILTCPQ--YPGS-EILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPRG 70 (91)
T ss_dssp EETTEEEEECSS--CTTS-CEEEEETTEEESSSCSCTTEEEET--TEEEETTCCHHHHCEEEEEEETT
T ss_pred EeCCEEEEECCC--CCCC-ceeeeeccccccCCCccccccccc--ceEEecccCccccCceEEEEcCC
Confidence 478999999953 3444 899999887644321111111111 1366666665 699999999864
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.52 E-value=0.0018 Score=36.91 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=45.7
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELDY 169 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~~ 169 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++.- ..+..+..+ .+...|.+.+++.+|.
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt 90 (117)
T d1c5db1 11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT 90 (117)
T ss_dssp EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence 3568999999999998643 337888873 3332110 012233332 2345799999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
+.|.|....
T Consensus 91 AvYYCAr~~ 99 (117)
T d1c5db1 91 AIYFCTRED 99 (117)
T ss_dssp EEEEEEECC
T ss_pred eEEEEeccC
Confidence 999997553
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.50 E-value=0.00089 Score=38.50 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=44.9
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELDY 169 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~~ 169 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++.- ..+..+..+ .+...|.|.+++.+|+
T Consensus 11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt 90 (120)
T d1dn0b1 11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT 90 (120)
T ss_dssp EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence 3568999999999998643 347888873 3222210 012333332 2345699999999999
Q ss_pred eEEEEEEe
Q psy10918 170 GTLICWGS 177 (207)
Q Consensus 170 g~y~C~~~ 177 (207)
+.|.|...
T Consensus 91 A~YYCAr~ 98 (120)
T d1dn0b1 91 AVYYCARP 98 (120)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEee
Confidence 99999543
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.47 E-value=0.0006 Score=39.31 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=44.7
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec------c----------ceeEEee--cCceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN------V----------AQAHILR--SGTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~------~----------~~~~~~~--~~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|++. |+.+..- . .+..+.. ..+...|.|.+++.+|
T Consensus 11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD 90 (119)
T d1qnzh_ 11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD 90 (119)
T ss_dssp EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence 356799999999998754 2336889873 3332110 0 1122322 2234569999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
++.|.|....
T Consensus 91 sAvYYCA~~~ 100 (119)
T d1qnzh_ 91 SAVYYCAIHY 100 (119)
T ss_dssp CEEEEEEECS
T ss_pred eeEEEEEEec
Confidence 9999997653
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.46 E-value=0.0009 Score=38.26 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=45.9
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------c----------cceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------N----------VAQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~----------~~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++. . ..+..+..+ .+...|.|.+++.+|
T Consensus 11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD 90 (117)
T d1iqdb1 11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD 90 (117)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence 3568999999999988642 236788873 332211 0 011223332 234569999999999
Q ss_pred CeEEEEEEecC
Q psy10918 169 YGTLICWGSNK 179 (207)
Q Consensus 169 ~g~y~C~~~n~ 179 (207)
++.|.|.....
T Consensus 91 tAvYYCA~~~~ 101 (117)
T d1iqdb1 91 TAVYYCAVPDP 101 (117)
T ss_dssp CEEEEEEECSS
T ss_pred ceEEEEeEcCC
Confidence 99999987654
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.46 E-value=6.2e-05 Score=43.12 Aligned_cols=67 Identities=9% Similarity=0.228 Sum_probs=42.1
Q ss_pred CCCcccCCCcEEEEeEeccCC-CCcEEEEEEC--Cccc------cccc---------cCCeEec----C--CeEEEEecC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHN--NKTL------HHNI---------AQGIIMT----N--QSLVLQRVN 68 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~-~~~~i~W~~~--~~~~------~~~~---------~~~~~~~----~--~~l~i~~~~ 68 (207)
....+.+|+++.|.|.+.+.. ..+.+.|+|. |+.+ .... ..++... . ..|+|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~ 87 (117)
T d1b2wh1 8 GGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR 87 (117)
T ss_dssp CCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence 456788999999999997631 1236789882 2211 1000 0111111 1 138888999
Q ss_pred CCCCeeeEEEE
Q psy10918 69 RQSAGNYTCVG 79 (207)
Q Consensus 69 ~~d~g~Y~C~~ 79 (207)
.+|++.|+|..
T Consensus 88 ~eDTAvYYCAr 98 (117)
T d1b2wh1 88 PEDTAVYYCAR 98 (117)
T ss_dssp GGGCEEEECCE
T ss_pred CCcceEEEEcc
Confidence 99999999964
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.46 E-value=0.00079 Score=38.77 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=44.9
Q ss_pred eeeeCCcEEEEEEeccCCC---CceEEEEEc--Cceeee----c-----------cceeEEeec--CceEEEEEecCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP---DVKFSWTFN--NSAETV----N-----------VAQAHILRS--GTLSVVAYSPNSEL 167 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~---~~~~~W~~~--~~~~~~----~-----------~~~~~~~~~--~~~~~l~i~~~~~~ 167 (207)
.+.+|+++.|.|.+.|... ...+.|++. |+.++. . ..+..+..+ .+...|.|.+++.+
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e 90 (120)
T d1ai1h1 11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE 90 (120)
T ss_dssp EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence 3568999999999988642 235779873 333321 0 012233332 23456999999999
Q ss_pred CCeEEEEEEec
Q psy10918 168 DYGTLICWGSN 178 (207)
Q Consensus 168 ~~g~y~C~~~n 178 (207)
|.+.|.|....
T Consensus 91 DtAvYYCAr~~ 101 (120)
T d1ai1h1 91 DTAMYYCSREN 101 (120)
T ss_dssp GCEEEEEEEEE
T ss_pred ceeEEEEEecC
Confidence 99999997543
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.45 E-value=0.00054 Score=39.95 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=45.6
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec-----------c----------ceeEEee--cCceEEEEEec
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN-----------V----------AQAHILR--SGTLSVVAYSP 163 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~-----------~----------~~~~~~~--~~~~~~l~i~~ 163 (207)
.+.+|+++.|.|.+.|.. ....+.|++. |+.++.- . .+..+.. ..+...|.|.+
T Consensus 11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~ 90 (127)
T d1i3ua_ 11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS 90 (127)
T ss_dssp ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence 356899999999999864 2347889873 2221110 0 0122222 23355699999
Q ss_pred CCCCCCeEEEEEEecC
Q psy10918 164 NSELDYGTLICWGSNK 179 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~ 179 (207)
++.+|++.|.|.....
T Consensus 91 l~~eDtAvYYCAr~~~ 106 (127)
T d1i3ua_ 91 LKPEDTAVYYCAAKTT 106 (127)
T ss_dssp CCGGGCEEEEEEEESC
T ss_pred ccccceeEEEEEEEee
Confidence 9999999999987643
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.44 E-value=0.0013 Score=37.49 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=45.9
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELDY 169 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~~ 169 (207)
.+.+|+++.|.|.+.|.. ....+.|++. |+.++.- ..+..+..+ .+...|.|.+++.+|.
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt 90 (116)
T d7fabh1 11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT 90 (116)
T ss_dssp EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence 356799999999999864 2347888873 3222110 012233332 3355799999999999
Q ss_pred eEEEEEEecC
Q psy10918 170 GTLICWGSNK 179 (207)
Q Consensus 170 g~y~C~~~n~ 179 (207)
+.|.|.....
T Consensus 91 AvYyCAr~~~ 100 (116)
T d7fabh1 91 AVYYCARNLI 100 (116)
T ss_dssp EEEEEEEECS
T ss_pred eEEEeeeecC
Confidence 9999986543
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.43 E-value=0.00093 Score=38.14 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=45.5
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELDY 169 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~~ 169 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++.- ..+..+..+ .+...|.+.+++.+|.
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT 90 (116)
T d1a2yb_ 11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT 90 (116)
T ss_dssp EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence 3568999999999998642 347888873 3322110 012233332 2345699999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
+.|.|....
T Consensus 91 AvYYCAr~~ 99 (116)
T d1a2yb_ 91 ARYYCARER 99 (116)
T ss_dssp EEEEEEEES
T ss_pred eEEEEEEeC
Confidence 999998654
|
| >d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00062 Score=35.69 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=38.0
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
....|.|.|... .. +|.|++++..+.. ...++.++-|-....+.-|.|.|...
T Consensus 16 ~dg~V~L~Cn~~---~k-~i~W~kdg~~i~~-----~~~~~ktlnLG~~~~DPRG~Y~C~~~ 68 (81)
T d1sy6a1 16 EDGSVLLTCDAE---AK-NITWFKDGKMIGF-----LTEDKKKWNLGSNAKDPRGMYQCKGS 68 (81)
T ss_dssp SSSEEEEEECSC---SS-EEEEEETTEEEEE-----EESSCCCEEEEEGGGCCEEEEEEESS
T ss_pred cCCeEEEEeCCC---Cc-EEEEecCCeEeec-----ccCCcceeecCCcccCCCcceEcCCC
Confidence 345699999522 22 8999999876542 11235678888888889999999653
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.42 E-value=0.0014 Score=37.54 Aligned_cols=71 Identities=20% Similarity=0.123 Sum_probs=43.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEc--Cceeeecc-----c--------eeEEee-cCceEEEEEecCCCCCCeE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFN--NSAETVNV-----A--------QAHILR-SGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~-----~--------~~~~~~-~~~~~~l~i~~~~~~~~g~ 171 (207)
...+.+|+.++|.|........ .+.|++. |+.+..-. . ..+... ......|.|.....+|++.
T Consensus 10 ~~~~~~G~~vtL~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~ 88 (112)
T d1fo0b_ 10 WRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRT 88 (112)
T ss_dssp EEECCTTCCEEEEEEESCTTCC-EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEE
T ss_pred eEEECCCCCEEEEEEEecCCCC-cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCcc
Confidence 3345689999999988765444 8999984 22221100 0 011111 0112347777788899999
Q ss_pred EEEEEecC
Q psy10918 172 LICWGSNK 179 (207)
Q Consensus 172 y~C~~~n~ 179 (207)
|.|.+...
T Consensus 89 Y~Ca~~~~ 96 (112)
T d1fo0b_ 89 LYCTCSAD 96 (112)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99997643
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.42 E-value=0.0016 Score=37.47 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=45.7
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++. .. .+..+..+ .+...|.+.+++.+|
T Consensus 12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eD 91 (122)
T d1vgeh1 12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPED 91 (122)
T ss_dssp EECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCc
Confidence 4678999999999998653 347888873 222211 00 12223332 234468999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
++.|.|....
T Consensus 92 tA~YYCAr~~ 101 (122)
T d1vgeh1 92 TAVYYCARDP 101 (122)
T ss_dssp CEEEEEEEET
T ss_pred ceEEEEeecC
Confidence 9999997764
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.41 E-value=0.0015 Score=37.60 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=45.3
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec------c----------ceeEEee--cCceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN------V----------AQAHILR--SGTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~------~----------~~~~~~~--~~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.+..- ...+.|++. |+.++.- . .+..+.. ..+...|.|.+++.+|
T Consensus 11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD 90 (120)
T d1pg7x1 11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND 90 (120)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence 3568999999999987642 237889873 3332210 0 1122322 2334569999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
++.|.|....
T Consensus 91 tA~YYCAr~~ 100 (120)
T d1pg7x1 91 SAVYYCARED 100 (120)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEeeecC
Confidence 9999998754
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.40 E-value=0.00083 Score=38.44 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=43.8
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEE--cCceeeec------c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTF--NNSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~--~~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|.+ .|+.++.- . .+..+..+ .+...|.|.+++.+|
T Consensus 11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eD 90 (117)
T d1mfah1 11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED 90 (117)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCc
Confidence 456899999999999864 234678886 34333211 0 01223222 234568999999999
Q ss_pred CeEEEEEE
Q psy10918 169 YGTLICWG 176 (207)
Q Consensus 169 ~g~y~C~~ 176 (207)
.+.|.|..
T Consensus 91 tAvYYCAr 98 (117)
T d1mfah1 91 SAVYYCTR 98 (117)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEec
Confidence 99999965
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.40 E-value=6.7e-05 Score=43.79 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=39.2
Q ss_pred ccCCCcEEEEeEeccC-CC--CcEEEEEECCccccccccCC-eEecCCe------EEEEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVAV-PP--VYKVEWRHNNKTLHHNIAQG-IIMTNQS------LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~-~~--~~~i~W~~~~~~~~~~~~~~-~~~~~~~------l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
...++.++|.|.+.+. |. ...++|++++..+....... ....+++ |.|..-.......|+|.+.+.
T Consensus 29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~ 104 (119)
T d1igtb3 29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK 104 (119)
T ss_dssp HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT
T ss_pred cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEEC
Confidence 3457889999999773 32 24889999998775432111 1222222 333332223456799999864
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0015 Score=37.78 Aligned_cols=70 Identities=16% Similarity=0.007 Sum_probs=41.8
Q ss_pred eeeCCcEEEEEEeccCC--CCceEEEEEcCc-eeeec--------------cceeE--EeecCceEEEEEecCCCCCCeE
Q psy10918 111 VARQEKVNISCEVDANP--PDVKFSWTFNNS-AETVN--------------VAQAH--ILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~-~~~~~--------------~~~~~--~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
+..|+.++|.|...+.. ....+.|++... ..... ..... .........|.|.+++.+|+|.
T Consensus 12 v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav 91 (118)
T d1yjdc1 12 VAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDI 91 (118)
T ss_dssp ECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEE
T ss_pred EeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeE
Confidence 45688999999987543 222345555211 11100 00111 2223345579999999999999
Q ss_pred EEEEEecCC
Q psy10918 172 LICWGSNKI 180 (207)
Q Consensus 172 y~C~~~n~~ 180 (207)
|.|.+....
T Consensus 92 YyCa~~~~~ 100 (118)
T d1yjdc1 92 YFCKIEVMY 100 (118)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccc
Confidence 999886543
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.40 E-value=0.0014 Score=37.42 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=45.5
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee----c--c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV----N--V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~----~--~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++. . . .+..+..+ .+...|.|.+++.+|
T Consensus 10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eD 89 (117)
T d1um5h1 10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSED 89 (117)
T ss_dssp EECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCc
Confidence 4668999999999998642 347889873 332211 0 0 11223332 334569999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
++.|.|....
T Consensus 90 tAvYYCAr~~ 99 (117)
T d1um5h1 90 SAVYYCARSS 99 (117)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEeecc
Confidence 9999997543
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.39 E-value=0.0011 Score=38.31 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=45.9
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|.+. ++.++. .. .+..+..+ .+...|.+.+++.+|
T Consensus 10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD 89 (124)
T d1zvya1 10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED 89 (124)
T ss_dssp ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence 356899999999999864 2347889873 222211 00 11223332 234568999999999
Q ss_pred CeEEEEEEecC
Q psy10918 169 YGTLICWGSNK 179 (207)
Q Consensus 169 ~g~y~C~~~n~ 179 (207)
++.|.|.....
T Consensus 90 tAvYYCAr~~~ 100 (124)
T d1zvya1 90 TAIYTCGATRK 100 (124)
T ss_dssp CEEEEEEECSS
T ss_pred ceEEEEeeccc
Confidence 99999987643
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.38 E-value=0.0011 Score=37.10 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=39.2
Q ss_pred eCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCCCeE
Q psy10918 113 RQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~~g~ 171 (207)
+|+++.|.|.+.|..- ...+.|++. |+.++. .. .+..+..+ .+...|.|.+++.+|.+.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 4789999999998642 347889873 222211 00 11223322 234579999999999999
Q ss_pred EEEEEecCC
Q psy10918 172 LICWGSNKI 180 (207)
Q Consensus 172 y~C~~~n~~ 180 (207)
|.|......
T Consensus 81 YYCAr~~~~ 89 (103)
T d1oari_ 81 YYCARMWYY 89 (103)
T ss_dssp EEEEEEECS
T ss_pred EEeEEECCC
Confidence 999865443
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.35 E-value=0.0015 Score=37.31 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=45.2
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec------c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|.+. |+.++.- . .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eD 90 (117)
T d1jpth1 11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAED 90 (117)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCC
Confidence 456899999999999864 2347888873 3222110 0 11223332 234568999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
.+.|.|....
T Consensus 91 TAvYYCAr~~ 100 (117)
T d1jpth1 91 TAVYYCARDT 100 (117)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEEeecC
Confidence 9999997654
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.35 E-value=0.0011 Score=37.74 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=45.3
Q ss_pred eeeeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSE 166 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~ 166 (207)
...+.+|+++.|.|.+.|..- ...+.|.+. |+.++. .. .+..+..+ .+...|.+.+++.
T Consensus 9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~ 88 (116)
T d1mjuh1 9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS 88 (116)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence 344678999999999998642 347788872 332211 00 12223332 2345688999999
Q ss_pred CCCeEEEEEEe
Q psy10918 167 LDYGTLICWGS 177 (207)
Q Consensus 167 ~~~g~y~C~~~ 177 (207)
+|.+.|.|...
T Consensus 89 eDtAvYYCAr~ 99 (116)
T d1mjuh1 89 DDSAVYYCANK 99 (116)
T ss_dssp GGCEEEEEEEE
T ss_pred CCceEEEEccc
Confidence 99999999753
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.00017 Score=40.77 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.++.++|.|.+.+ +|....|+|..++........... ..++ .|.|..-.. +.+.|+|.+.+..
T Consensus 19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~ 88 (102)
T d1mjuh2 19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV-LQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPA 88 (102)
T ss_dssp ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-EETTEEEEEEEEEECTTTT-TTSCCEEEEEEGG
T ss_pred CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccc-cCCCCEEEEEEEEEehhHc-CCceEEEEEEECC
Confidence 4778999999987 455568999776643221111111 1222 344444332 4678999998753
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.34 E-value=0.0014 Score=37.48 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=44.8
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec------c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|.+. |+.++.- . .+..+..+ .+...|.|.+++.+|
T Consensus 11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eD 90 (118)
T d1ct8b1 11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCc
Confidence 456899999999999864 2347888873 3332210 0 01222222 234568899999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
.+.|.|....
T Consensus 91 tAvYYCAr~~ 100 (118)
T d1ct8b1 91 SAIYYCARYR 100 (118)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEEeeec
Confidence 9999997653
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.33 E-value=0.00099 Score=38.07 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=43.8
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeeec------c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|++. |+.++.- . .+..+..+ .+...|.|.+++.+|
T Consensus 11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD 90 (115)
T d1f3dh1 11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED 90 (115)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence 356899999999998753 2236788863 3332210 0 11223222 334569999999999
Q ss_pred CeEEEEEEe
Q psy10918 169 YGTLICWGS 177 (207)
Q Consensus 169 ~g~y~C~~~ 177 (207)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (115)
T d1f3dh1 91 SAVYYCAND 99 (115)
T ss_dssp CEEEEEEEC
T ss_pred cEEEEEecc
Confidence 999999654
|
| >d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=0.00095 Score=35.31 Aligned_cols=53 Identities=19% Similarity=0.458 Sum_probs=37.9
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
+...|.|.|.... . +|.|++++..+.... ....+|-|-....+.-|.|.|...
T Consensus 21 ~dGsV~L~Cn~~~---k-~i~W~kdg~~i~~~~-----~~~ktlnLG~~~~DPRGiY~C~g~ 73 (86)
T d1jbja1 21 GDGSVLLTCGLTD---K-TIKWLKDGSIISPLN-----ATKNTWNLGNNAKDPRGTYQCQGA 73 (86)
T ss_dssp SSCEEEEECSSSC---S-CEEEEETTEECCCSS-----CCSSCCEEEETTSCCEEEEEEEES
T ss_pred cCCeEEEEeCCCC---c-EEEEecCCceecccc-----cccceeecCCcccCCCcceEcCCC
Confidence 3456999996432 2 899999998765421 223567788888888999999654
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00087 Score=37.91 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=37.3
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-CeEecCCe------EEEEecCCCCC---eeeEEEEeeeC
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQS------LVLQRVNRQSA---GNYTCVGFNIE 83 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~------l~i~~~~~~d~---g~Y~C~~~~~~ 83 (207)
...+.++|.|.+.+ +|....|+|.+++......... .....+++ |.|.... .+. ..|+|.+.+..
T Consensus 19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~e-W~~~~~~~ytC~V~H~~ 94 (105)
T d1dn0b2 19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKD-VMAGTDEHVVCKVQHPN 94 (105)
T ss_dssp --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTC-C---CCCEEEEEEECTT
T ss_pred CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHH-hccCCCCEEEEEEEECC
Confidence 34667999999987 4666699999998766542111 11112232 3333322 222 37999998653
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.30 E-value=0.0019 Score=36.83 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=44.7
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|++. |+.++. .. .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD 90 (117)
T d1jnhb1 11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED 90 (117)
T ss_dssp ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence 356899999999999864 2347888872 332211 00 12233333 234568999999999
Q ss_pred CeEEEEEEe
Q psy10918 169 YGTLICWGS 177 (207)
Q Consensus 169 ~g~y~C~~~ 177 (207)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (117)
T d1jnhb1 91 SAVYSCSRG 99 (117)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999654
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.30 E-value=0.0011 Score=37.87 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec------c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|.+. |+.++.- . .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eD 90 (118)
T d2jelh1 11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCc
Confidence 4568999999999988643 337888873 3222110 0 11223322 234568999999999
Q ss_pred CeEEEEEE
Q psy10918 169 YGTLICWG 176 (207)
Q Consensus 169 ~g~y~C~~ 176 (207)
++.|.|..
T Consensus 91 TAvYYCAr 98 (118)
T d2jelh1 91 SAIYYCAR 98 (118)
T ss_dssp CEEEEEEE
T ss_pred ceeeeEEE
Confidence 99999954
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.29 E-value=0.0015 Score=37.41 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=45.6
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeeec------c----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETVN------V----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~------~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|.+. |+.++.- . .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD 90 (118)
T d2fbjh1 11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence 3568999999999998642 236788863 3322210 0 11233332 234568999999999
Q ss_pred CeEEEEEEecC
Q psy10918 169 YGTLICWGSNK 179 (207)
Q Consensus 169 ~g~y~C~~~n~ 179 (207)
++.|.|.....
T Consensus 91 tAvYYCAr~~~ 101 (118)
T d2fbjh1 91 TALYYCARLHY 101 (118)
T ss_dssp CEEEEEEEEET
T ss_pred ceEEEeeEecC
Confidence 99999987653
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.29 E-value=0.0012 Score=37.24 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=45.2
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------c------------cceeEEeec--CceEEEEEecCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------N------------VAQAHILRS--GTLSVVAYSPNSE 166 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~------------~~~~~~~~~--~~~~~l~i~~~~~ 166 (207)
.+.+|+++.|.|.+.|..- ...+.|.+. |+.++. . ..+..+..+ .+...|.|.+++.
T Consensus 11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~ 90 (109)
T d2ck0h1 11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKT 90 (109)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCH
Confidence 4678999999999987642 237888863 322221 0 012233433 3345689999999
Q ss_pred CCCeEEEEEEec
Q psy10918 167 LDYGTLICWGSN 178 (207)
Q Consensus 167 ~~~g~y~C~~~n 178 (207)
+|++.|.|.-.+
T Consensus 91 eDTAvYYCAr~~ 102 (109)
T d2ck0h1 91 EDTGIYYCVRGR 102 (109)
T ss_dssp GGCEEEEEEEEC
T ss_pred hHCEEEEEEEcC
Confidence 999999998543
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.28 E-value=0.0021 Score=36.96 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=44.8
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|.+. |+.++. .. .+..+..+ .+...|.+.+++.+|
T Consensus 11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD 90 (121)
T d2p49b1 11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED 90 (121)
T ss_dssp EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence 357899999999998763 2347888873 222211 00 12233333 234568999999999
Q ss_pred CeEEEEEEe
Q psy10918 169 YGTLICWGS 177 (207)
Q Consensus 169 ~g~y~C~~~ 177 (207)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d2p49b1 91 TATYYCAAG 99 (121)
T ss_dssp CEEEEEEES
T ss_pred eeEEeeecc
Confidence 999999864
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.28 E-value=0.00091 Score=38.24 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=43.5
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|.. ....+.|++. |+.++. .. .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eD 90 (118)
T d1nlbh1 11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCc
Confidence 357899999999998864 2236888863 322211 00 12223332 234568999999999
Q ss_pred CeEEEEEE
Q psy10918 169 YGTLICWG 176 (207)
Q Consensus 169 ~g~y~C~~ 176 (207)
++.|.|..
T Consensus 91 tAvYYCAr 98 (118)
T d1nlbh1 91 TATYFCAR 98 (118)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEee
Confidence 99999954
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00045 Score=39.01 Aligned_cols=64 Identities=11% Similarity=0.220 Sum_probs=37.7
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecC------CeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTN------QSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.+..++|.|.+.+ +|....|+|.+++..............+ +.|.|..-.. ....|+|.+.+..
T Consensus 19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~ 89 (103)
T d1c5ch2 19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKP 89 (103)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGG
T ss_pred CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCC
Confidence 4677999999977 4555689998776543211111111122 2355554433 3467999998754
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.26 E-value=0.0018 Score=37.38 Aligned_cols=67 Identities=9% Similarity=0.176 Sum_probs=42.8
Q ss_pred eeeCCcEEEEEEeccCCC---CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEVDANPP---DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
+.+|++++|.|.+.|..- ...+.|++. |+.++.- ..+..+..+ .+...|.|.+++.+|
T Consensus 12 vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eD 91 (123)
T d1r0ah1 12 VQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETAD 91 (123)
T ss_dssp ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred ECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccccc
Confidence 567999999999887532 125679863 3322210 012223332 234569999999999
Q ss_pred CeEEEEEEe
Q psy10918 169 YGTLICWGS 177 (207)
Q Consensus 169 ~g~y~C~~~ 177 (207)
++.|.|...
T Consensus 92 sAvYyCAr~ 100 (123)
T d1r0ah1 92 TAIYYCAQS 100 (123)
T ss_dssp CEEEEEEEE
T ss_pred ceEEeeccc
Confidence 999999754
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.25 E-value=0.0027 Score=36.37 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=45.0
Q ss_pred eeeeCCcEEEEEEeccCCC--CceEEEEE--cCceeeec---------------cceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP--DVKFSWTF--NNSAETVN---------------VAQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~--~~~~~W~~--~~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|.+ .|+.++.- ..+..+..+ .+...|.+.+++.+|
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD 90 (119)
T d1ncwh1 11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED 90 (119)
T ss_dssp EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence 3568999999999998753 23578876 34332210 012233332 334568999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
.+.|.|....
T Consensus 91 TAvYYCAr~~ 100 (119)
T d1ncwh1 91 TATYYCAGLL 100 (119)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEeEec
Confidence 9999997543
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.24 E-value=0.0014 Score=37.24 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=44.1
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++. .. .+..+..+ .+...|.|.+++.+|
T Consensus 11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD 90 (114)
T d1indh1 11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED 90 (114)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence 3568999999999988642 236788873 222211 00 11223332 234569999999999
Q ss_pred CeEEEEEEe
Q psy10918 169 YGTLICWGS 177 (207)
Q Consensus 169 ~g~y~C~~~ 177 (207)
.+.|.|...
T Consensus 91 tAvYYCA~~ 99 (114)
T d1indh1 91 TALYFCASH 99 (114)
T ss_dssp CEEEEEECG
T ss_pred ccEEEECCC
Confidence 999999753
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.24 E-value=0.0022 Score=37.33 Aligned_cols=68 Identities=7% Similarity=0.143 Sum_probs=43.0
Q ss_pred eeeeCCcEEEEEEeccCCC---CceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP---DVKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSEL 167 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~---~~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~ 167 (207)
.+.+|+++.|.|.+.|..- ...+.|++. ++.+..- ..+..+..+ .+...|.|.+++.+
T Consensus 11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e 90 (126)
T d1etzb1 11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS 90 (126)
T ss_dssp EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence 3567999999999887532 225668752 2222110 011223332 23457999999999
Q ss_pred CCeEEEEEEe
Q psy10918 168 DYGTLICWGS 177 (207)
Q Consensus 168 ~~g~y~C~~~ 177 (207)
|++.|.|...
T Consensus 91 DtAvYyCAr~ 100 (126)
T d1etzb1 91 DTATYHCARR 100 (126)
T ss_dssp GCEEEEEEEE
T ss_pred ccceEEEEEe
Confidence 9999999864
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.24 E-value=0.0015 Score=37.45 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=45.2
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee------cc----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV------NV----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~------~~----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++. .. .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD 90 (119)
T d1rz7h1 11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED 90 (119)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence 3568999999999998642 337888873 222211 00 12223332 334569999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
.+.|.|....
T Consensus 91 TAvYYCAr~~ 100 (119)
T d1rz7h1 91 TAVYYCAADP 100 (119)
T ss_dssp CEEEEEEECT
T ss_pred ceEEEEeecC
Confidence 9999997653
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=8.6e-05 Score=42.10 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=37.5
Q ss_pred cCCCcEEEEeEeccC-CC--CcEEEEEECCccccccccCC-eEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVAV-PP--VYKVEWRHNNKTLHHNIAQG-IIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~--~~~i~W~~~~~~~~~~~~~~-~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+.+++|.|.+.+. |. ...+.|+++|..+....... ....++ .|.|..-.......|+|.+.+.
T Consensus 14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~ 88 (103)
T d1i1ca1 14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSG 88 (103)
T ss_dssp TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECS
T ss_pred ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeC
Confidence 356778999999763 32 24889999998765432111 111222 2333222222345699999864
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.23 E-value=0.0049 Score=35.53 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=44.7
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEc--Cceeee----c-c-----------ceeEEeec--CceEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFN--NSAETV----N-V-----------AQAHILRS--GTLSVVAYSPNSELD 168 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~----~-~-----------~~~~~~~~--~~~~~l~i~~~~~~~ 168 (207)
.+.+|+++.|.|.+.|..- ...+.|++. |+.++. . . .+..+..+ .+...|.+.+++.+|
T Consensus 11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eD 90 (124)
T d2b1hh1 11 VKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSD 90 (124)
T ss_dssp EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccccc
Confidence 4578999999999998652 236788872 332221 0 0 11223332 234578999999999
Q ss_pred CeEEEEEEec
Q psy10918 169 YGTLICWGSN 178 (207)
Q Consensus 169 ~g~y~C~~~n 178 (207)
.+.|.|....
T Consensus 91 TA~YYCAR~~ 100 (124)
T d2b1hh1 91 TALYYCARLG 100 (124)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEeecC
Confidence 9999996443
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.23 E-value=0.0017 Score=38.11 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=44.4
Q ss_pred eeeeCCcEEEEEEeccCCCC---ceEEEEEc--Cceeeec---------------cceeEEeec--CceEEEEEecCCCC
Q psy10918 110 GVARQEKVNISCEVDANPPD---VKFSWTFN--NSAETVN---------------VAQAHILRS--GTLSVVAYSPNSEL 167 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~---~~~~W~~~--~~~~~~~---------------~~~~~~~~~--~~~~~l~i~~~~~~ 167 (207)
.+.+|+++.|.|.+.|..-. ..+.|++. ++.++.- ..+..+..+ .+...|.|.+++.+
T Consensus 11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e 90 (132)
T d1tjgh1 11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV 90 (132)
T ss_dssp EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence 35679999999998875421 25789873 2222110 012223332 23456999999999
Q ss_pred CCeEEEEEEec
Q psy10918 168 DYGTLICWGSN 178 (207)
Q Consensus 168 ~~g~y~C~~~n 178 (207)
|++.|.|....
T Consensus 91 DtAvYYCAr~~ 101 (132)
T d1tjgh1 91 DTATYFCAHRR 101 (132)
T ss_dssp GCEEEEEEEEC
T ss_pred cceEEEEEEec
Confidence 99999998664
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.21 E-value=0.0031 Score=36.11 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=45.4
Q ss_pred eeeeCCcEEEEEEeccCC-CCceEEEEE--cCceeee------cc------------ceeEEeec--CceEEEEEecCCC
Q psy10918 110 GVARQEKVNISCEVDANP-PDVKFSWTF--NNSAETV------NV------------AQAHILRS--GTLSVVAYSPNSE 166 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~-~~~~~~W~~--~~~~~~~------~~------------~~~~~~~~--~~~~~l~i~~~~~ 166 (207)
.+.+|+++.|.|.+.|.. ....+.|++ .|+.++. .. .+..+..+ .+...|.|.+++.
T Consensus 11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~ 90 (120)
T d1dlfh_ 11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA 90 (120)
T ss_dssp EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence 356899999999998763 234788887 3433221 00 11223332 2345799999999
Q ss_pred CCCeEEEEEEec
Q psy10918 167 LDYGTLICWGSN 178 (207)
Q Consensus 167 ~~~g~y~C~~~n 178 (207)
+|.+.|.|....
T Consensus 91 eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 91 EDTGIYYCTGIY 102 (120)
T ss_dssp GGCEEEEEEEEB
T ss_pred CCceEEEeeEec
Confidence 999999997654
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.21 E-value=0.0011 Score=37.88 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=44.4
Q ss_pred eeeCCcEEEEEEeccCC-CCceEEEEE--cCceeeec----c-----------ceeEEeec--CceEEEEEecCCCCCCe
Q psy10918 111 VARQEKVNISCEVDANP-PDVKFSWTF--NNSAETVN----V-----------AQAHILRS--GTLSVVAYSPNSELDYG 170 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~-~~~~~~W~~--~~~~~~~~----~-----------~~~~~~~~--~~~~~l~i~~~~~~~~g 170 (207)
+.+|+++.|.|.+.|.. ....+.|++ .|+.++.- . .+..+..+ .+...|.+.+++.+|++
T Consensus 12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTA 91 (116)
T d1fn4b1 12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTG 91 (116)
T ss_dssp CCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCE
T ss_pred ECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCE
Confidence 56899999999999864 234788987 33332210 0 01112221 23446889999999999
Q ss_pred EEEEEEecC
Q psy10918 171 TLICWGSNK 179 (207)
Q Consensus 171 ~y~C~~~n~ 179 (207)
.|.|.....
T Consensus 92 vYyCAr~~~ 100 (116)
T d1fn4b1 92 TYYCTRDLY 100 (116)
T ss_dssp EEEEEEECS
T ss_pred EEEEEeecC
Confidence 999976543
|