Psyllid ID: psy10921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHILRNQDPRDTKVIGDKLRDQATT
Secondary Structure (PSIPRED)
ccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHccccccccccHHHEEcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHccccccEccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEdrigkqlepdytkgifqsigfkefhnylmlsdqdrqepdytkgifqsigfkefhnylmlsdsdresdkGREIFNKSLDALVLANVQYAKKQNQWVRNRllkcpdrmvppvyslnctdlttwaqsvtapALHIVQSYldnraptgieplaqeyvdpsyynagtfncdvcnrlfigqHQYEQHMNSVKHRRMKVKMERQLQHILrnqdprdtkvigdklrdqatt
Flexible Loop (DISEMBL)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHilrnqdprdtkvigdklrdqatt
Low Complexity Region (SEG)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHILRNQDPRDTKVIGDKLRDQATT
Disordered region (IsUnstruct)
*****KFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLML***********EIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQ*******************************************
Disordered Region (DISOPRED)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIG*****DYTKGIFQSIGFKEFHNYLMLSDQDR********IFQSIGFKEFHNYLMLSD********REIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPT****************AGTFNCDVCNRLFIGQHQYEQHM*****************************************
Disordered Region (DISEMBL)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHILRNQDPRDTKVIGDKLRDQATT
Disordered Region (DISPRO)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQL*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHILRNQDPRDTKVIGDKLRDQATT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q9H3H1	467	tRNA dimethylallyltransfe	yes	N/A	0.702	0.404	0.357	4e-35
Q80UN9	467	tRNA dimethylallyltransfe	yes	N/A	0.706	0.406	0.363	9e-35
Q9UT75	434	tRNA dimethylallyltransfe	yes	N/A	0.695	0.430	0.258	1e-10
P07884	428	tRNA dimethylallyltransfe	yes	N/A	0.717	0.450	0.235	7e-10
Q9ZUX7	466	tRNA dimethylallyltransfe	yes	N/A	0.762	0.439	0.229	6e-08

>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens GN=TRIT1 PE=1 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 35/224 (15%)

Query: 11  HLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEF 70
           H +  VLD+RL+ RV  M+  GL+EEL  FHR+YN+  + +  +                
Sbjct: 230 HADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQ---------------- 273

Query: 71  HNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLAN 130
                         DY  GIFQSIGFKEFH YL +++     +   ++  K ++AL    
Sbjct: 274 --------------DYQHGIFQSIGFKEFHEYL-ITEGKCTLETSNQLLKKGIEALKQVT 318

Query: 131 VQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTG 190
            +YA+KQN+WV+NR L  P  +VPPVY L  +D++ W +SV  PAL IVQS++    PT 
Sbjct: 319 KRYARKQNRWVKNRFLSRPGPIVPPVYGLEVSDVSKWEESVLEPALEIVQSFIQGHKPTA 378

Query: 191 IEPLAQEYVDPSYYNAGTFN-CDVCNRLFIGQHQYEQHMNSVKH 233
             P+   Y +    N  +++ CD+C+R+ IG  ++  H+ S  H
Sbjct: 379 T-PIKMPYNEAE--NKRSYHLCDLCDRIIIGDREWAAHIKSKSH 419

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5

>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus GN=Trit1 PE=2 SV=2

 Score =  147 bits (370), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 33/223 (14%)

Query: 11  HLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEF 70
           H +  VLD+RL+ RV  M+  GL+EEL  FHR+YN                         
Sbjct: 230 HADQAVLDERLDKRVDDMLAAGLLEELRGFHRRYN------------------------- 264

Query: 71  HNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLAN 130
                L +      DY  GIFQSIGFKEFH YL  ++     +   ++  K ++AL    
Sbjct: 265 -----LKNISENSQDYQHGIFQSIGFKEFHEYLT-TEGKCTPETSNQLLKKGIEALKQVT 318

Query: 131 VQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTG 190
            +YA+KQN+WV+NR L  P   VPPVY L  +D++ W +SV  PAL+IVQS++    PT 
Sbjct: 319 KRYARKQNRWVKNRFLSRPGPSVPPVYGLEVSDVSKWEESVLEPALNIVQSFIQGHKPTA 378

Query: 191 IEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKH 233
           + P+   Y + S        CD+C+R+ IG  ++  H+ S  H
Sbjct: 379 M-PVKMAY-NESENKRSYHMCDLCDRIIIGDREWAAHLKSKSH 419

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q9UT75|MOD5_SCHPO tRNA dimethylallyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tit1 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 76/263 (28%)

Query: 13  NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHN 72
           +S VL  RL+ RV  M+ +GL++E+                                   
Sbjct: 210 DSLVLMPRLDKRVDKMLSHGLVDEIKSMKS------------------------------ 239

Query: 73  YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQ 132
              L++ ++  PD+T+GI+Q IGFKEF  +      +  SD    +FN  L+ + ++  Q
Sbjct: 240 ---LAESEKFSPDFTRGIWQCIGFKEFMPWF-----EAPSDI---VFNDCLERMKVSTRQ 288

Query: 133 YAKKQNQWVRNRLLK--------CPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYL- 183
           YAK Q +W+++R L          P  ++    + N TDL  W + V   A  + Q +  
Sbjct: 289 YAKSQKKWIQSRFLPMCLAQQDLSPSSIL--FSTTNTTDLNNWEEQVEK-ACRVFQYFFY 345

Query: 184 --DNRAPTGIE----PLAQEYVDPSYYNA-----GTFNCDVC------NRLFIGQHQYEQ 226
             D  AP+  +      A++Y+  S  N        F C+ C          IG+  +  
Sbjct: 346 NGDAIAPSADDQHAFEKARDYL--SIMNGRQSQKKKFVCEECLDKRGDPFTVIGEDAFNV 403

Query: 227 HMNSVKH----RRMKVKMERQLQ 245
           H+ S KH    RR K + ERQ++
Sbjct: 404 HIKSRKHKTTVRRKKERAERQIR 426

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|P07884|MOD5_YEAST tRNA dimethylallyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOD5 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 58/251 (23%)

Query: 2   ELNLKFTVNHL----NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDY 57
           ++ LKF    L      E L +RL+ RV  M++ G ++E+ Q +  Y++++      P+ 
Sbjct: 194 KITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNK----FTPEQ 249

Query: 58  TKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGRE 117
            +                             G++Q IGFKEF  +L       ++D    
Sbjct: 250 CEN----------------------------GVWQVIGFKEFLPWLT-----GKTDDNTV 276

Query: 118 IFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALH 177
                ++ +     QYAK+Q +W++  L+  PD +   +Y L+ TDL+ W  + +  A+ 
Sbjct: 277 KLEDCIERMKTRTRQYAKRQVKWIKKMLI--PD-IKGDIYLLDATDLSQWDTNASQRAIA 333

Query: 178 IVQSYLDN------RAPTGIEPLAQ--EYVDPSYYNAGTFNCDVC------NRLFIGQHQ 223
           I   ++ N      RAP  +E L    E       +   + C+VC      N + IG+  
Sbjct: 334 ISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKY 393

Query: 224 YEQHMNSVKHR 234
           ++ H+ S +H+
Sbjct: 394 WKIHLGSRRHK 404

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in the anticodon loop on a specific subset of tRNAs both in the cytosol and the mitochondrion, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). This modification optimizes the codon:anticodon fit in the ribosome and promotes translational fidelity. Competes with the farnesyl pyrophosphate synthase ERG20 for the common substrate dimethylallyl diphosphate (DMAPP).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 105/227 (46%), Gaps = 22/227 (9%)

Query: 14  SEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNY 73
           + VLD+ +E RV  M+  GL++E+   ++             DYT+G+ QSIG +EF ++
Sbjct: 235 TAVLDRYVEQRVDAMVDAGLLDEVYDIYKP----------GADYTRGLRQSIGVREFEDF 284

Query: 74  LMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
           L +   +      T         KE    ++    D   DK R +  +++D + L N + 
Sbjct: 285 LKIHLSETCAGHLTSLSNDDKVMKENLRKILNFPKD---DKLRIMLEEAIDRVKL-NTRR 340

Query: 134 AKKQNQWVRNRLLKCPDRMVPPV----YSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPT 189
             ++ +   +RL       +  +    Y L+ ++  +W   V  PA  I++ +L+    +
Sbjct: 341 LLRRQKRRVSRLETVFGWNIHYIDATEYILSKSE-ESWNAQVVKPASEIIRCFLETETES 399

Query: 190 GIEPLAQEYVDPSYYNAGTFNCDVC-NRLFIGQHQYEQHMNSVKHRR 235
           G +P + + ++   +    + C+ C N++  G+H++E H     HR+
Sbjct: 400 GRDPTSGKSIERDLWT--QYVCEACGNKILRGRHEWEHHKQGRTHRK 444

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
156555105	494	PREDICTED: tRNA dimethylallyltransferase	0.739	0.402	0.385	8e-44
340720913	470	PREDICTED: tRNA dimethylallyltransferase	0.750	0.429	0.389	1e-43
350397955	449	PREDICTED: tRNA dimethylallyltransferase	0.702	0.420	0.393	4e-42
270003038	373	hypothetical protein TcasGA2_TC000060 [T	0.762	0.549	0.383	2e-41
91092888	419	PREDICTED: similar to tRNA isopentenyltr	0.762	0.489	0.383	3e-41
110760779	251	PREDICTED: tRNA dimethylallyltransferase	0.739	0.792	0.382	3e-40
380019144	901	PREDICTED: uncharacterized protein LOC10	0.743	0.221	0.380	8e-40
383853924	610	PREDICTED: tRNA dimethylallyltransferase	0.691	0.304	0.399	2e-39
405965862	545	tRNA isopentenyltransferase, mitochondri	0.691	0.341	0.380	1e-37
346468251	476	hypothetical protein [Amblyomma maculatu	0.710	0.401	0.363	1e-36

>gi|156555105|ref|XP_001604528.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Nasonia vitripennis]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 37/236 (15%)

Query: 13  NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHN 72
           N +VLD+RL+ RV +M++  L++ELL FH +YN+DRI                       
Sbjct: 227 NRDVLDRRLDARVDSMLKADLVQELLDFHERYNKDRI----------------------- 263

Query: 73  YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQ 132
                 Q  +  DY+KGIFQSIGFKEFHNYL+L   +R+S+ G+++  ++++ L +A  +
Sbjct: 264 ------QKNESADYSKGIFQSIGFKEFHNYLILPKQERDSETGQKLLKEAIENLKIATRR 317

Query: 133 YAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAP---- 188
           YA++Q++WVRNRL++  DR VPPVYSL+CTDL  W   V   A+ IV + +    P    
Sbjct: 318 YARRQHKWVRNRLIRRVDRQVPPVYSLDCTDLEQWESEVYGKAVEIVAAVMSGETPRVKA 377

Query: 189 --TGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242
             + ++    +  DPS        C+VC R+FIG+ Q+ +HM   KH+R+  K  R
Sbjct: 378 TNSSVDDTDAKVTDPSIET--NHFCEVCQRVFIGEFQWTEHMTGAKHKRVLEKKRR 431

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720913|ref|XP_003398873.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Bombus terrestris]

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 139/236 (58%), Gaps = 34/236 (14%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           +VL++RL+ RV  M++ GL++ELL FH++YNE RI                         
Sbjct: 224 KVLEERLDSRVDAMVETGLVQELLDFHQRYNEQRI------------------------- 258

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
               +     DYTKGIFQSIGFKEFH YL+L + ++   KG+E+  K +D L L   +YA
Sbjct: 259 ----KSNTSADYTKGIFQSIGFKEFHAYLVLPEDEKREKKGQELLQKGIDDLKLVTKRYA 314

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPL 194
           ++Q +W+RNRL++  DR VPP+Y+L+CT+L  W   V  PA+ I+++ L    PT  +PL
Sbjct: 315 RRQEKWIRNRLVRRSDRQVPPIYTLDCTNLDQWNSCVYEPAVAIIEAVLRGEKPTQ-KPL 373

Query: 195 AQEYVDPSYY---NAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHI 247
            +   +  +    N     CD+C+R+FIG HQ+  HM S KH+R  +K +R+L+ +
Sbjct: 374 NETVENEKFTDNSNEERHYCDICDRIFIGYHQWNIHMGSTKHKRT-LKKKRRLEEL 428

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397955|ref|XP_003485043.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Bombus impatiens]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 37/226 (16%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           +VL++RL+ RV  M++ GL++ELL FH++YNE RI                         
Sbjct: 224 KVLEERLDSRVDAMVETGLVQELLDFHQRYNEQRI------------------------- 258

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
               +     DYTKGIFQSIGFKEFH YL+L + +++  KG+E+  K +D L +   +YA
Sbjct: 259 ----KSNTSADYTKGIFQSIGFKEFHAYLVLPEDEKQEKKGQELLQKGIDDLKMVTKRYA 314

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPL 194
           ++Q +W+RNRLL+  DR VPP+Y+L+CT+L  W   V  PA+ I+++ L    P   +PL
Sbjct: 315 RRQERWIRNRLLRRSDRQVPPIYTLDCTNLDQWNSCVYEPAVAIIEAVLRGEKPVQ-KPL 373

Query: 195 -----AQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRR 235
                 +++ D S  N     C +C+R+FIG HQ+  HM S KH+R
Sbjct: 374 NETVENEKFTDSS--NEERHYCRICDRIFIGHHQWTIHMGSTKHQR 417

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003038|gb|EEZ99485.1| hypothetical protein TcasGA2_TC000060 [Tribolium castaneum]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 32/237 (13%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           E L++RL  RV  M++ GL++EL  FH+ YNE+RI                         
Sbjct: 166 ETLNERLNNRVDKMMEQGLLQELANFHKLYNENRI------------------------- 200

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
               ++ + PDYTKG+FQSIGFKEFH+YL +S+ ++ S+ G+    K ++ L L   +YA
Sbjct: 201 ----KNSEIPDYTKGVFQSIGFKEFHSYLTMSEEEKNSENGQLSLQKCIEDLKLVTRRYA 256

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPL 194
           +KQN+W RNR L   DR VPP+Y L+ T+L  W ++VT PA+ I+QS++ N++    +PL
Sbjct: 257 RKQNKWTRNRFLGRRDREVPPMYGLDVTNLDKWEENVTKPAIEIIQSFI-NQSECKYQPL 315

Query: 195 AQEYVDPSYYNA--GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHILR 249
             E V  S  N+   T  CD+C R+F+G  Q+ +H+ S +H++M  +  R L+  L+
Sbjct: 316 PVEPVATSVPNSEDDTNFCDICERIFVGSLQWREHLRSNRHKKMIERRNRLLKEELK 372

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092888|ref|XP_970625.1| PREDICTED: similar to tRNA isopentenyltransferase 1 [Tribolium castaneum]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 32/237 (13%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           E L++RL  RV  M++ GL++EL  FH+ YNE+RI                         
Sbjct: 212 ETLNERLNNRVDKMMEQGLLQELANFHKLYNENRI------------------------- 246

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
               ++ + PDYTKG+FQSIGFKEFH+YL +S+ ++ S+ G+    K ++ L L   +YA
Sbjct: 247 ----KNSEIPDYTKGVFQSIGFKEFHSYLTMSEEEKNSENGQLSLQKCIEDLKLVTRRYA 302

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPL 194
           +KQN+W RNR L   DR VPP+Y L+ T+L  W ++VT PA+ I+QS++ N++    +PL
Sbjct: 303 RKQNKWTRNRFLGRRDREVPPMYGLDVTNLDKWEENVTKPAIEIIQSFI-NQSECKYQPL 361

Query: 195 AQEYVDPSYYNA--GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHILR 249
             E V  S  N+   T  CD+C R+F+G  Q+ +H+ S +H++M  +  R L+  L+
Sbjct: 362 PVEPVATSVPNSEDDTNFCDICERIFVGSLQWREHLRSNRHKKMIERRNRLLKEELK 418

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110760779|ref|XP_001120157.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like, partial [Apis mellifera]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 134/235 (57%), Gaps = 36/235 (15%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           +VL+ RLE RV  M++ GL++ELL FHR+YN+ RI                         
Sbjct: 46  KVLEDRLERRVDDMVETGLVQELLDFHRRYNKQRI------------------------- 80

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
               +     DYTKGIFQSIGFKEFH+YL+L + ++   KG+E+  + +D L +   +YA
Sbjct: 81  ----KSNTSVDYTKGIFQSIGFKEFHDYLVLPEEEKGGKKGQELLQRGIDDLKMVTKRYA 136

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPL 194
           KKQ +WV NRLL+  DR VPP+Y L+ TD+  W   V  PA+ I+++ L    P   +PL
Sbjct: 137 KKQKKWVMNRLLRRSDRQVPPIYVLDSTDVNQWDSCVYEPAVAIIEAVLRGEKPEQ-KPL 195

Query: 195 AQEYVDPSYYNAGTFN---CDVCNRLFIGQHQYEQHMNSVKHRRM---KVKMERQ 243
            +   +  + ++       CD+C+R+FIG+ Q+  H+ S KH+R+   K K+E Q
Sbjct: 196 NESIENKKFSDSSNEERHFCDICDRIFIGEFQWNIHLKSTKHKRIEKRKKKLEAQ 250

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019144|ref|XP_003693474.1| PREDICTED: uncharacterized protein LOC100868799 [Apis florea]

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 138/234 (58%), Gaps = 34/234 (14%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           +VL+ RL+ RV  M++ GL++ELL FHR+YNE RI              SI         
Sbjct: 692 KVLEDRLDRRVDDMVETGLVQELLDFHRRYNEQRIKSNT----------SI--------- 732

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
                     DYTKGIFQSIGFKEFH+YL+L + ++   KG+E+  + +D L +   +YA
Sbjct: 733 ----------DYTKGIFQSIGFKEFHDYLVLPEEEKGEKKGQELLQRGIDDLKMVTKRYA 782

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPL 194
           KKQ +W+ NRLL+  DR VPP+Y+L+ T++  W   V  PA+ I+++ L    P   +PL
Sbjct: 783 KKQQKWIMNRLLRRSDRQVPPIYALDSTNVNQWNSCVYEPAVAIIEAVLRGEKPEQ-KPL 841

Query: 195 AQEYVDPSYYNAGTFN---CDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQ 245
            +   +  + ++       CD+C+R+FIG+ Q+  H+ S+KH+R  VK +++L+
Sbjct: 842 NESVENKKFSDSSNEERQYCDICDRIFIGEFQWNIHLKSIKHKRT-VKRKKRLE 894

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853924|ref|XP_003702472.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Megachile rotundata]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 125/223 (56%), Gaps = 37/223 (16%)

Query: 13  NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHN 72
           +++VL++RLE RV  M++ GL++ELL FHR+YNE RI                       
Sbjct: 397 DAKVLEERLESRVDAMMETGLVQELLDFHRRYNEQRI----------------------- 433

Query: 73  YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQ 132
                 +     DYT GIFQSIGFKEFH YLMLS+ +R   KG+ + NK ++ L L   +
Sbjct: 434 ------KSNTSADYTTGIFQSIGFKEFHAYLMLSEEERREKKGQALLNKGIEDLKLVTKR 487

Query: 133 YAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIE 192
           YAKKQ +W+ NRL +  DR VPP+Y L+CT +  W  SV  PA+ I+++ L    P   +
Sbjct: 488 YAKKQEKWIMNRLARRKDRQVPPIYVLDCTHIDKWTTSVYEPAVAIIEAVLKGEKPEQ-K 546

Query: 193 PL-----AQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNS 230
           PL      +++ D S  N     CD C R+FIG+ Q+  H+N 
Sbjct: 547 PLNENIQNEKHTDSS--NEEAHYCDDCERVFIGELQWNAHING 587

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405965862|gb|EKC31211.1| tRNA isopentenyltransferase, mitochondrial [Crassostrea gigas]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 35/221 (15%)

Query: 16  VLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLM 75
           VLD R   RV+TMI+ GLI+ELL FH+++N  R                           
Sbjct: 252 VLDDRTNKRVNTMIERGLIQELLDFHKEFNAKRT-------------------------- 285

Query: 76  LSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAK 135
              Q+ +E DYT GIFQSIGFKEFH YL+L + ++ S++G+ +F K ++ + +A  QYA+
Sbjct: 286 ---QENRELDYTTGIFQSIGFKEFHEYLILPEEEKHSERGKLLFEKGVENMKIATRQYAR 342

Query: 136 KQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLA 195
           +Q  W++NRLL+      PPVYS++ TD++ W + V  PA+ IVQ Y++   P   EPL 
Sbjct: 343 RQIYWIKNRLLRNKGHNYPPVYSMDSTDVSHWTEKVHDPAVQIVQDYMNGVVPQQ-EPLP 401

Query: 196 QEYVDPSYYNAGTFN-CDVCNRLFIGQHQYEQHMNSVKHRR 235
            +     Y N   FN C  CN+ F+ + ++  H+ S KH++
Sbjct: 402 LQ----EYDNGAEFNECKACNKTFVMRKEWNIHIKSAKHKK 438

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|346468251|gb|AEO33970.1| hypothetical protein [Amblyomma maculatum]

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 32/223 (14%)

Query: 11  HLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEF 70
           H +  VLD+RL+ RV  MI+ GLI+E+ +FH QYN+ R+   LE DYTKGIFQSIGFKEF
Sbjct: 254 HCDQNVLDERLDARVDDMIEAGLIQEMEEFHEQYNKHRLDHNLEADYTKGIFQSIGFKEF 313

Query: 71  HNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLAN 130
           H YL++  +++  P                             KGR+ F + L  +    
Sbjct: 314 HKYLLMDTEEKASP-----------------------------KGRKAFTEGLWLMKQVT 344

Query: 131 VQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTG 190
            +Y++KQ +W+  R L+ PDR VPP+YSL+ TD++ W ++    A  I+  +++ R P+ 
Sbjct: 345 KRYSRKQKKWIVQRFLRTPDRQVPPIYSLDATDVSRWDETARDKAFDIIADFIEGREPSH 404

Query: 191 IEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKH 233
            +P+    +D +      F CD+C+   IG   +E H  S KH
Sbjct: 405 -KPVP--LLDSNNNQPRLFTCDICDVSVIGNITWEAHRKSKKH 444

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
UNIPROTKB|Q5QPK7	379	TRIT1 "tRNA dimethylallyltrans	0.747	0.530	0.339	2.9e-32
UNIPROTKB|Q9H3H1	467	TRIT1 "tRNA dimethylallyltrans	0.713	0.411	0.345	2e-31
MGI|MGI:1914216	467	Trit1 "tRNA isopentenyltransfe	0.713	0.411	0.35	2e-31
RGD|1304781	479	Trit1 "tRNA isopentenyltransfe	0.747	0.419	0.344	2.6e-31
UNIPROTKB|Q3T7B8	221	TRIT1 "tRNA dimethylallyltrans	0.661	0.805	0.360	4.9e-30
UNIPROTKB|E1C6R1	459	TRIT1 "Uncharacterized protein	0.776	0.455	0.333	1.3e-29
UNIPROTKB|F1SMC5	413	TRIT1 "Uncharacterized protein	0.710	0.462	0.343	4.4e-29
ZFIN|ZDB-GENE-060503-297	455	trit1 "tRNA isopentenyltransfe	0.702	0.415	0.354	1.2e-28
UNIPROTKB|F6RA00	467	TRIT1 "Uncharacterized protein	0.743	0.428	0.325	4.8e-28
UNIPROTKB|F1Q3P4	468	TRIT1 "Uncharacterized protein	0.717	0.412	0.321	8.6e-28

UNIPROTKB|Q5QPK7 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/209 (33%), Positives = 117/209 (55%)

Query:    37 LLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGF 96
             +L  H    ++R+ K+++     G+ + +  ++FH      +      DY  GIFQSIGF
Sbjct:   140 ILWLHADQADERLDKRVDDMLAAGLLEEL--RDFHRRYNQKNVSENSQDYQHGIFQSIGF 197

Query:    97 KEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPV 156
             KEFH YL +++     +   ++  K ++AL     +YA+KQN+WV+NR L  P  +VPPV
Sbjct:   198 KEFHEYL-ITEGKCTLETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPIVPPV 256

Query:   157 YSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFN-CDVCN 215
             Y L  +D++ W +SV  PAL IVQS++    PT   P+   Y +    N  +++ CD+C+
Sbjct:   257 YGLEVSDVSKWEESVLEPALEIVQSFIQGHKPTAT-PIKMPYNEAE--NKRSYHLCDLCD 313

Query:   216 RLFIGQHQYEQHMNSVKHRRMKVKMERQL 244
             R+ IG  ++  H+ S  H   ++K  R+L
Sbjct:   314 RIIIGDREWAAHIKSKSHLN-QLKKRRRL 341

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|Q9H3H1 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 69/200 (34%), Positives = 114/200 (57%)

Query:    46 EDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLML 105
             ++R+ K+++     G+ + +  ++FH      +      DY  GIFQSIGFKEFH YL +
Sbjct:   237 DERLDKRVDDMLAAGLLEEL--RDFHRRYNQKNVSENSQDYQHGIFQSIGFKEFHEYL-I 293

Query:   106 SDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT 165
             ++     +   ++  K ++AL     +YA+KQN+WV+NR L  P  +VPPVY L  +D++
Sbjct:   294 TEGKCTLETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPIVPPVYGLEVSDVS 353

Query:   166 TWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFN-CDVCNRLFIGQHQY 224
              W +SV  PAL IVQS++    PT   P+   Y +    N  +++ CD+C+R+ IG  ++
Sbjct:   354 KWEESVLEPALEIVQSFIQGHKPTAT-PIKMPYNEAE--NKRSYHLCDLCDRIIIGDREW 410

Query:   225 EQHMNSVKHRRMKVKMERQL 244
               H+ S  H   ++K  R+L
Sbjct:   411 AAHIKSKSHLN-QLKKRRRL 429

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=TAS

GO:0008033 "tRNA processing" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914216 Trit1 "tRNA isopentenyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/200 (35%), Positives = 114/200 (57%)

Query:    46 EDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLML 105
             ++R+ K+++     G+ + +  + FH    L +      DY  GIFQSIGFKEFH YL  
Sbjct:   237 DERLDKRVDDMLAAGLLEEL--RGFHRRYNLKNISENSQDYQHGIFQSIGFKEFHEYLT- 293

Query:   106 SDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT 165
             ++     +   ++  K ++AL     +YA+KQN+WV+NR L  P   VPPVY L  +D++
Sbjct:   294 TEGKCTPETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPSVPPVYGLEVSDVS 353

Query:   166 TWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFN-CDVCNRLFIGQHQY 224
              W +SV  PAL+IVQS++    PT + P+   Y +    N  +++ CD+C+R+ IG  ++
Sbjct:   354 KWEESVLEPALNIVQSFIQGHKPTAM-PVKMAYNESE--NKRSYHMCDLCDRIIIGDREW 410

Query:   225 EQHMNSVKHRRMKVKMERQL 244
               H+ S  H   ++K  R+L
Sbjct:   411 AAHLKSKSHLH-QLKKRRRL 429

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IEA

RGD|1304781 Trit1 "tRNA isopentenyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/209 (34%), Positives = 114/209 (54%)

Query:    37 LLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGF 96
             +L  H    ++R+ K+++     G+ + +  ++FH    L +      DY  GIFQSIGF
Sbjct:   240 ILWLHADQADERLDKRVDDMLAAGLLEEL--RDFHRRYNLKNVSEDSQDYQHGIFQSIGF 297

Query:    97 KEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPV 156
             KEFH YL  ++     +   ++  K ++AL     +YA+KQN+WVRNR L  P   VPPV
Sbjct:   298 KEFHEYLT-TEGKCTPETSNQLLKKGVEALKQVTKRYARKQNRWVRNRFLSRPGPSVPPV 356

Query:   157 YSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFN-CDVCN 215
             Y L  +D++ W + V  PAL IVQS++    PT   P+   Y +    N  +++ CD+C+
Sbjct:   357 YGLEVSDVSKWEEFVLEPALSIVQSFIQGSKPTAT-PVKIPYSETE--NKRSYHMCDLCD 413

Query:   216 RLFIGQHQYEQHMNSVKHRRMKVKMERQL 244
             R+ IG  ++  H  S  H   ++K  R+L
Sbjct:   414 RIIIGDREWAAHTKSKSHLH-QLKKRRKL 441

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q3T7B8 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 67/186 (36%), Positives = 106/186 (56%)

Query:    60 GIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIF 119
             G+ + +  ++FH      +      DY  GIFQSIGFKEFH YL +++     +   ++ 
Sbjct:     5 GLLEEL--RDFHRRYNQKNVSENSQDYQHGIFQSIGFKEFHEYL-ITEGKCTLETSNQLL 61

Query:   120 NKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIV 179
              K ++AL     +YA+KQN+WV+NR L  P  +VPPVY L  +D++ W +SV  PAL IV
Sbjct:    62 KKGIEALKQVTKRYARKQNRWVKNRFLSRPGPIVPPVYGLEVSDVSKWEESVLEPALEIV 121

Query:   180 QSYLDNRAPTGIEPLAQEYVDPSYYNAGTFN-CDVCNRLFIGQHQYEQHMNSVKHRRMKV 238
             QS++    PT   P+   Y +    N  +++ CD+C+R+ IG  ++  H+ S  H   ++
Sbjct:   122 QSFIQGHKPTAT-PIKMPYNEAE--NKRSYHLCDLCDRIIIGDREWAAHIKSKSHLN-QL 177

Query:   239 KMERQL 244
             K  R+L
Sbjct:   178 KKRRRL 183

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C6R1 TRIT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 73/219 (33%), Positives = 115/219 (52%)

Query:    46 EDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLML 105
             + R+ ++++     G+ + +  ++FH     +       DY  GIFQSIGFKEFH YL+ 
Sbjct:   239 DQRLEQRVDDMLAAGLLEEL--RDFHQRYNQAKVTENRQDYQHGIFQSIGFKEFHEYLV- 295

Query:   106 SDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT 165
             S+ +   +    +  K + AL   + +YA++QN+WVRNR LK P   VPPVY L  +DL 
Sbjct:   296 SEGNCSPETSALLLQKGIQALKQVSKRYARRQNKWVRNRFLKRPGPNVPPVYGLEVSDLL 355

Query:   166 TWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYE 225
              W + V  PAL IV+S++  R P  +EP+  E  D +        C++CNR+ IG  ++ 
Sbjct:   356 RWEEDVLKPALEIVESFIQGRKPP-VEPVKME-CDVNENKRSHRVCELCNRVIIGDREWA 413

Query:   226 QHMNSVKHRRMKVKMERQLQ---HILRN-QDPRDTKVIG 260
              H  S  H    +K  ++L+   H     +D R  +  G
Sbjct:   414 AHTRSKAHLH-HLKKRKKLEAAGHAAETVRDSRSAETAG 451

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SMC5 TRIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 69/201 (34%), Positives = 108/201 (53%)

Query:    46 EDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLML 105
             ++R+ K+++     G+   +  ++FH             DY  GIFQSIGFKEFH YL +
Sbjct:   180 DERLDKRVDNMLAAGLLDEL--RDFHRRYNEKKVAENSQDYQHGIFQSIGFKEFHQYL-I 236

Query:   106 SDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT 165
             ++     +   ++  K ++AL     +YA+KQN+WV+NR L  P   VPPVY L  +D++
Sbjct:   237 TEGKCTPETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPSVPPVYGLEVSDVS 296

Query:   166 TWAQSVTAPALHIVQSYLDNRAP--TGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQ 223
              W +SV  PAL IVQS++    P  T +   + E  +   Y+     CD+C+R+ IG  +
Sbjct:   297 KWEESVLEPALEIVQSFIQGHKPAATPVNMPSSETENKRSYHM----CDLCDRIIIGDRE 352

Query:   224 YEQHMNSVKHRRMKVKMERQL 244
             +  HM S  H    +K  R+L
Sbjct:   353 WAAHMKSKSHL-YHLKKRRRL 372

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-060503-297 trit1 "tRNA isopentenyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 72/203 (35%), Positives = 113/203 (55%)

Query:    46 EDRIGKQLEPDYTKGIFQSIGFKEFH---NYLMLSDQDRQEPDYTKGIFQSIGFKEFHNY 102
             ++R+ K+++   + G+   +  K+FH   N  M+ +  +   +Y  GIFQSIGFKEFH Y
Sbjct:   239 DERLDKRVDQMLSLGLIDEL--KDFHLRFNEKMIKESSQ---NYQHGIFQSIGFKEFHEY 293

Query:   103 LMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCT 162
             L  S++  + ++ + + NK +++L     +YA+KQN+WVRNR LK P   VPPVY L+ T
Sbjct:   294 LTTSENISQEERDK-LMNKGIESLKQVTRRYARKQNKWVRNRFLKRPASNVPPVYGLDVT 352

Query:   163 DLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQH 222
             D+T W  +V  PAL I+        P+  +P+  E V+ S        CD+C ++ IG  
Sbjct:   353 DVTNWETTVLTPALEILDCLQKGEQPSA-QPIKAEGVE-SRNKRSHHMCDLCEKVIIGDL 410

Query:   223 QYEQHMNSVKHR---RMKVKMER 242
             ++  H  S  H    R K K E+
Sbjct:   411 EWTAHQKSKNHLYQVRKKRKSEQ 433

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F6RA00 TRIT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 4.8e-28, P = 4.8e-28
 Identities = 69/212 (32%), Positives = 113/212 (53%)

Query:    37 LLQFHRQYN--EDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSI 94
             +L  H +    ++R+ K+++     G+   +  ++FH             DY  GIFQSI
Sbjct:   226 ILWLHAEQTVLDERLDKRVDNMLAAGLLDEL--RDFHKRYNEKKVAENGQDYQHGIFQSI 283

Query:    95 GFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVP 154
             GFKEFH YL +++     +   ++  K ++AL     +YA+KQN+WV+NR L  P   VP
Sbjct:   284 GFKEFHEYL-ITEGKCTPEIRNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGTSVP 342

Query:   155 PVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAP--TGIEPLAQEYVDPSYYNAGTFNCD 212
             PVY L  +D++ W +SV  PAL IV+S++    P  T ++    E  +   Y+     C+
Sbjct:   343 PVYGLEVSDVSKWEESVLEPALEIVRSFIQGHKPAATPVKMPGSETENKRSYHM----CE 398

Query:   213 VCNRLFIGQHQYEQHMNSVKHRRMKVKMERQL 244
             +C+R+ IG  ++  HM S  H   ++K  R+L
Sbjct:   399 LCDRIIIGDREWAAHMKSKSHLH-QLKKRRRL 429

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1Q3P4 TRIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 8.6e-28, P = 8.6e-28
 Identities = 64/199 (32%), Positives = 105/199 (52%)

Query:    46 EDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLML 105
             ++R+ K+++     G+   +  ++FH             DY  GIFQSIGFKEFH YL+ 
Sbjct:   238 DERLDKRVDDMLAAGLLDEL--RDFHRRYNQKKVAENSQDYQHGIFQSIGFKEFHEYLV- 294

Query:   106 SDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT 165
             ++     +   ++  K +++L     +YA+KQN+WV+NR L  P   VPPVY L  +D++
Sbjct:   295 TEGKCTPETSNQLLKKGIESLKQVTKRYARKQNRWVKNRFLSRPGPRVPPVYGLEVSDVS 354

Query:   166 TWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYE 225
              W + V  PAL IVQS++    P    P+     + +        CD+C+R+ IG  ++ 
Sbjct:   355 KWEECVLEPALEIVQSFIQGHQPAAA-PVKMP-CNETENRRSHHMCDLCDRIIIGDREWA 412

Query:   226 QHMNSVKHRRMKVKMERQL 244
              H+ S  H   ++K  R+L
Sbjct:   413 AHIKSKSHLH-RLKKRRRL 430

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	2e-13
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	9e-07
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	6e-06
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-04
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	2e-04
pfam01715	253	pfam01715, IPPT, IPP transferase	3e-04
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	6e-04

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 18/223 (8%)

Query: 16  VLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLM 75
           VLD+ +  RV  MI  GL++E+   +              DYT+G+ Q+IG +EF ++L 
Sbjct: 239 VLDRYVNQRVDCMIDAGLLDEVYDIYDPG----------ADYTRGLRQAIGVREFEDFLR 288

Query: 76  LSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAK 135
           L     +  + T         KE    ++    D   DK + + ++++D + L   +  +
Sbjct: 289 LYLSRNENGELTSSSNNDKVMKENSRKILNFPHD---DKLKILLDEAIDQVKLNTRRLVR 345

Query: 136 KQNQWVR--NRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEP 193
           +Q + +   N +       +    ++ C    +W   V  PA+ IV+ +L +   +G + 
Sbjct: 346 RQKRRLHRLNTVFGWNIHYIDATEAILCKSEESWNAKVVKPAVEIVRRFLSDDTSSGPDA 405

Query: 194 LAQEYVDPSYYNAGTFNCDVC-NRLFIGQHQYEQHMNSVKHRR 235
            + + V    +    + C+ C N++  G H++EQH     HR+
Sbjct: 406 SSGKSVSRELWT--QYVCEACGNKVLRGAHEWEQHKQGRGHRK 446

Length = 468

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 49/133 (36%)

Query: 13  NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHN 72
           + EVL +R+  RV  M++ GLIEE+             K L   Y +G            
Sbjct: 199 DREVLYERINRRVDAMLEQGLIEEV-------------KAL---YARG------------ 230

Query: 73  YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQ 132
                       D      Q+IG+KE   YL           G     ++++ +  A  Q
Sbjct: 231 ---------LHLDLP--AMQAIGYKEILAYLD----------GGISLEEAIERIKTATRQ 269

Query: 133 YAKKQNQWVRNRL 145
           YAK+Q  W RN+L
Sbjct: 270 YAKRQLTWFRNQL 282

Length = 308

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 209 FNCDVCNRLFIGQHQYEQHMNSVKHR 234
           F C  C++ F  ++  E H+ S KH+
Sbjct: 2   FYCVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 209 FNCDVCNRLFIGQHQYEQHMNSVKH 233
           F C++CN  F  + Q + H+   KH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 16/63 (25%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEE---LLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFH 71
           E L +R+  RV  M++ GL+EE   LL            +   PD      ++IG+KE  
Sbjct: 200 EELYERINQRVDQMLEQGLLEEVRALLA-----------RGYLPDLP--AMRAIGYKELL 246

Query: 72  NYL 74
            YL
Sbjct: 247 AYL 249

Length = 307

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 51/130 (39%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQY-NEDRIGKQLEPDYTKGIFQSIGFKEFHNY 73
           EVL +R+  RV  M+++GL+EE+   + Q  NED               ++IG+KEF  Y
Sbjct: 164 EVLHERIARRVDDMLESGLVEEVKALYAQGLNEDL-----------PAIRAIGYKEFLLY 212

Query: 74  LMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
           L                                        G     ++++ ++ A  QY
Sbjct: 213 L---------------------------------------DGECTLEEAIERIIKATRQY 233

Query: 134 AKKQNQWVRN 143
           AK+Q  W R 
Sbjct: 234 AKRQMTWFRK 243

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 49/129 (37%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           E L +R+E RVH M+++GL+ E+             K L   Y +               
Sbjct: 196 EPLHQRIEQRVHDMLESGLLAEV-------------KAL---YAQY-------------- 225

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
                            Q+IG+KEF  YL          +G      +++ +     QYA
Sbjct: 226 ---------DLCDLPSIQAIGYKEFLLYL----------EGTVSLEDAIERIKCNTRQYA 266

Query: 135 KKQNQWVRN 143
           K+Q  W R 
Sbjct: 267 KRQLTWFRK 275

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN02748	468	tRNA dimethylallyltransferase	100.0
PLN02165	334	adenylate isopentenyltransferase	100.0
KOG1384|consensus	348		99.97
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	99.96
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	99.96
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.96
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.95
PLN02840	421	tRNA dimethylallyltransferase	99.94
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	99.94
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.55
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.5
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.17
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.93
KOG0717|consensus	508		96.43
KOG3408|consensus	129		96.0
KOG3032|consensus	264		95.57
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	95.32
KOG4727|consensus	193		94.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.32
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	93.94
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.72
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	93.62
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	93.06
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	92.77
KOG2785|consensus	390		91.95
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	91.82
smart00355	26	ZnF_C2H2 zinc finger.	91.02
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	90.56
KOG0227|consensus	222		89.34
PTZ00448	373	hypothetical protein; Provisional	88.31
KOG3454|consensus	165		86.77
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	85.1
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	80.98

>PLN02748 tRNA dimethylallyltransferase

Probab=100.00  E-value=8.8e-51  Score=394.44  Aligned_cols=224  Identities=21%  Similarity=0.376  Sum_probs=166.5

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++|||.||++||++||+.|+..+          .+++.|+|||||||||.+||..+....
T Consensus       225 ~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~GlleEv~~l~~~~----------~~~~~~~~qaIGykE~~~yL~~~~~~~  294 (468)
T PLN02748        225 RFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPG----------ADYTRGLRQAIGVREFEDFLRLYLSRN  294 (468)
T ss_pred             CCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC----------CCCCcccceeEcHHHHHHHHHhccccc
Confidence            5899999999999999999999999999999999999999642          245689999999999999998542211


Q ss_pred             CCCccccchhhhcccccch-hhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921         82 QEPDYTKGIFQSIGFKEFH-NYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN  160 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD  160 (269)
                      +....+.|...+...+... ..|+.. ++.+..   .++++||+.||.+||||||||+|||++.. ...   .+.+||||
T Consensus       295 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~l~eaie~ik~~Tr~yAKRQ~tw~~rl~-~~~---~~~i~~lD  366 (468)
T PLN02748        295 ENGELTSSSNNDKVMKENSRKILNFP-HDDKLK---ILLDEAIDQVKLNTRRLVRRQKRRLHRLN-TVF---GWNIHYID  366 (468)
T ss_pred             ccccccccccccchhhhhhhcccccc-chhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc---cCCeeEee
Confidence            0000000000000001000 111111 122223   68999999999999999999999999642 111   26899999


Q ss_pred             CCCc------chhhhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCCCCcccccccCcc-cccCHHHHHHHhhhhHH
Q psy10921        161 CTDL------TTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNR-LFIGQHQYEQHMNSVKH  233 (269)
Q Consensus       161 ~t~~------~~W~~~V~~~A~~iv~~fl~~~~p~~~~~l~~~~~~~~~~~~~~~~Ce~C~~-~~~ge~eW~~HlkSr~H  233 (269)
                      +|++      +.|.+.|++||++||++||++.+|. ..+.......+. +.|++|+||+|++ +++|++||++|++||+|
T Consensus       367 ~t~~~~~~~~~~W~~~V~~pa~~iv~~fL~~~~~~-~~~~~~~~~~~~-~~~~~~~Ce~C~~~~~~G~~eW~~Hlksr~H  444 (468)
T PLN02748        367 ATEAILCKSEESWNAKVVKPAVEIVRRFLSDDTSS-GPDASSGKSVSR-ELWTQYVCEACGNKVLRGAHEWEQHKQGRGH  444 (468)
T ss_pred             chhhhhhccHhHHHHHhHHHHHHHHHHHHcCCCCC-CcCccccccccc-cccccccccCCCCcccCCHHHHHHHhcchHH
Confidence            9987      8999999999999999999997754 222211111223 6899999999997 99999999999999999


Q ss_pred             HHHhHHHHHHhh
Q psy10921        234 RRMKVKMERQLQ  245 (269)
Q Consensus       234 rk~~kk~kk~~~  245 (269)
                      |+++++.+|++.
T Consensus       445 k~~~~~~~k~~~  456 (468)
T PLN02748        445 RKRVQRLKQKQT  456 (468)
T ss_pred             HHHHhHHHhhhh
Confidence            999999988754

>PLN02165 adenylate isopentenyltransferase

Probab=100.00  E-value=9.9e-34  Score=264.73  Aligned_cols=147  Identities=22%  Similarity=0.328  Sum_probs=118.3

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++|||.||++||++||..|++...        +.+++.|++||||||||.+||....+..
T Consensus       173 ~~~~~~i~l~~dr~~L~~RI~~Rvd~Ml~~GlldEv~~L~~~~~--------~~~~~~~~~qaIGYkE~~~yL~~~~~~~  244 (334)
T PLN02165        173 RYDCCFIWVDVSEPVLFEYLSKRVDEMMDSGMFEELAEFYDPVK--------SGSEPLGIRKAIGVPEFDRYFKKYPPEN  244 (334)
T ss_pred             CCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC--------CcccCCCceeEEcHHHHHHHHHhccccc
Confidence            58899999999999999999999999999999999999997522        1233479999999999999997432110


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                      ..           |.           .+...+   .++++|++.++.+||||||||+||||+..  .   ..++++|||+
T Consensus       245 ~~-----------g~-----------~~~~~~---~~l~e~ie~ik~~TrqYAKRQ~TWfR~~~--~---~~~~~~~lD~  294 (334)
T PLN02165        245 KM-----------GK-----------WDQARK---AAYEEAVREIKENTCQLAKRQIEKIMKLK--S---AGWDIKRVDA  294 (334)
T ss_pred             cC-----------Cc-----------cchhhh---hhHHHHHHHHHHHHHHHHHHHHHHhcCCc--c---cCCcEEEEec
Confidence            00           00           000012   47999999999999999999999999862  2   2379999999


Q ss_pred             CCc---------------chhhhhhHHHHHHHHHHHhccC
Q psy10921        162 TDL---------------TTWAQSVTAPALHIVQSYLDNR  186 (269)
Q Consensus       162 t~~---------------~~W~~~V~~~A~~iv~~fl~~~  186 (269)
                      |++               +.|.+.|.+||++|+.+|+.|+
T Consensus       295 t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~~  334 (334)
T PLN02165        295 TASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVED  334 (334)
T ss_pred             hhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence            976               7899999999999999999874

>KOG1384|consensus

Probab=99.97  E-value=6.5e-32  Score=249.32  Aligned_cols=190  Identities=23%  Similarity=0.365  Sum_probs=141.7

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++|+|||+++.++|.+||++|||.||++||+||+++||+.+..+...   ..+++.|++|.|||++|++|+..     
T Consensus       136 ryd~c~lWlda~~~VL~~~l~~RVD~Ml~~Gl~eE~~~f~~~~~s~~~~---~i~~~iGv~e~d~f~~~~~~~~~-----  207 (348)
T KOG1384|consen  136 RYDCCFLWLDADQAVLFERLDKRVDDMLESGLLEELRDFYDPYNSSYRS---GIRKAIGVPEFDGFKEFYPWLTD-----  207 (348)
T ss_pred             ccceEEEEEecchHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhcCccc---cchhccCcHHHhhhhhccccccc-----
Confidence            6999999999999999999999999999999999999999886644211   12344444444444444444421     


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                               ..+....   .++++||+.||.+|+||||||.+||.+++++..    |.++.+|+
T Consensus       208 -------------------------k~d~~~~---~~l~~aie~iK~nT~~lakrQ~~~I~~l~~~~~----~~i~~vda  255 (348)
T KOG1384|consen  208 -------------------------KWDLARK---ELLEKAIEAIKENTRRLAKRQKRKIEKLFLPRK----WDIHRVDA  255 (348)
T ss_pred             -------------------------hhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----ccccccch
Confidence                                     0111223   579999999999999999999999999987652    78899998


Q ss_pred             CCcch----------------hhhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCCCCcccccccCcc------ccc
Q psy10921        162 TDLTT----------------WAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNR------LFI  219 (269)
Q Consensus       162 t~~~~----------------W~~~V~~~A~~iv~~fl~~~~p~~~~~l~~~~~~~~~~~~~~~~Ce~C~~------~~~  219 (269)
                      |.+..                |+..|..|...|++.|+.......-          ....+..+.|++|..      +..
T Consensus       256 T~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  325 (348)
T KOG1384|consen  256 TEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDYYESEAR----------RLEGPESLAAEICLNDSLEACVVK  325 (348)
T ss_pred             HHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHhhhhhcc----------cccchHHHhHHHhhccchhHHHHH
Confidence            86532                6777888988999999875332200          113445677777752      478


Q ss_pred             CHHHHHHHhhhhHHHHHhHHHH
Q psy10921        220 GQHQYEQHMNSVKHRRMKVKME  241 (269)
Q Consensus       220 ge~eW~~HlkSr~Hrk~~kk~k  241 (269)
                      |+..|..|..||+|+-.+++.+
T Consensus       326 ~~r~~~~~~~~k~~~s~~~r~~  347 (348)
T KOG1384|consen  326 GERSKNRHEGSKSHKSCVKRNK  347 (348)
T ss_pred             hhhhhhhhhccccccccccccC
Confidence            9999999999999998777653

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=99.96  E-value=1.5e-29  Score=229.47  Aligned_cols=102  Identities=26%  Similarity=0.451  Sum_probs=93.0

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++|||+||++||++||..|++.+..          .+.+++||||||||.+||.      
T Consensus       151 ~~~~~~i~L~~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~----------~~~~~~~aIGYkE~~~~l~------  214 (253)
T PF01715_consen  151 RYDFLVIGLDRDREELYERINKRVDEMLEQGLLEEVRALLERGLP----------PDLPAMQAIGYKEFIDYLE------  214 (253)
T ss_dssp             SSEEEEEEEESSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGG----------TTSCGGGSTTHHHHHHHHT------
T ss_pred             cCCeEEEEeCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC----------CcchhceeeehHHHHHhhc------
Confidence            589999999999999999999999999999999999999987521          2389999999999999994      


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                                    ++   .++++|++.++.+||||||||+|||||+         ..++|+|.
T Consensus       215 ------------------------------g~---~~~~e~~e~i~~~TrqyAKRQ~TWfr~~---------~~~~w~d~  252 (253)
T PF01715_consen  215 ------------------------------GE---ISLEEAIERIKTNTRQYAKRQRTWFRNQ---------PNIHWIDI  252 (253)
T ss_dssp             ------------------------------TS---SCHHHHHHHHHHHHHHHHHHHHHHHHTT---------SSEEEEET
T ss_pred             ------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCeeeeC
Confidence                                          34   7799999999999999999999999998         47999996

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=99.96  E-value=5.7e-29  Score=229.23  Aligned_cols=104  Identities=31%  Similarity=0.440  Sum_probs=93.1

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++|+++|++||++||+.||++||++||..|++...          +.+.+++||||||||++||.      
T Consensus       183 ~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~----------~~~~~~~~aIGYkE~~~~l~------  246 (287)
T TIGR00174       183 FYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYD----------LCDLPSIQAIGYKEFLLYLE------  246 (287)
T ss_pred             CCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC----------CcCCchhhhccHHHHHHHHc------
Confidence            58999999999999999999999999999999999999997521          12489999999999999993      


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                                    ++   .++++|++.++.+||||||||+||||++         .+++|+|+
T Consensus       247 ------------------------------g~---~~~~e~ie~i~~~Tr~yAKRQ~TWfR~~---------~~~~~~~~  284 (287)
T TIGR00174       247 ------------------------------GT---VSLEDAIERIKCNTRQYAKRQLTWFRKW---------SDVLWLDS  284 (287)
T ss_pred             ------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCEEeCC
Confidence                                          34   7899999999999999999999999997         36899998


Q ss_pred             CC
Q psy10921        162 TD  163 (269)
Q Consensus       162 t~  163 (269)
                      ++
T Consensus       285 ~~  286 (287)
T TIGR00174       285 TD  286 (287)
T ss_pred             CC
Confidence            75

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.96  E-value=1.5e-28  Score=228.62  Aligned_cols=104  Identities=25%  Similarity=0.402  Sum_probs=92.5

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hcccccccCCCCCCcCCccccccHHHHHHHHhhhccC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQ-YNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQD   80 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~-~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~   80 (269)
                      +|++++|||++|+++|++||++|||.|+++||++||..|++. +..           ..+++||||||||.+||.     
T Consensus       187 ~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~~-----------~~~~~~aIGykE~~~yl~-----  250 (307)
T PRK00091        187 PYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYLP-----------DLPAMRAIGYKELLAYLD-----  250 (307)
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCCC-----------CCccceeecHHHHHHHHc-----
Confidence            589999999999999999999999999999999999999974 221           389999999999999993     


Q ss_pred             CCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921         81 RQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN  160 (269)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD  160 (269)
                                                     ++   .++++|++.++.+||||||||+||||+++         .++|+|
T Consensus       251 -------------------------------g~---~s~~e~~e~i~~~Tr~yAKRQ~TWfr~~~---------~~~w~~  287 (307)
T PRK00091        251 -------------------------------GE---ISLEEAIEKIKQATRQYAKRQLTWFRRQP---------DIHWLD  287 (307)
T ss_pred             -------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCeeec
Confidence                                           33   67999999999999999999999999984         688999


Q ss_pred             CCCc
Q psy10921        161 CTDL  164 (269)
Q Consensus       161 ~t~~  164 (269)
                      .++.
T Consensus       288 ~~~~  291 (307)
T PRK00091        288 LSPE  291 (307)
T ss_pred             CCCc
Confidence            5443

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=99.95  E-value=8.3e-28  Score=222.67  Aligned_cols=105  Identities=22%  Similarity=0.299  Sum_probs=91.6

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      .|++++|||++|+++|++||++|||.||++||++||..|+....          +.+.+++||||||||.+||.      
T Consensus       185 ~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~----------~~~~~~~~aIGYkE~~~yl~------  248 (300)
T PRK14729        185 FKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGY----------NENTPAFKGIGYREFLLWKS------  248 (300)
T ss_pred             CCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCC----------CCCCCcceeEcHHHHHHHHh------
Confidence            37899999999999999999999999999999999999996411          12489999999999999993      


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                                   .++   .++++|++.++.+||||||||+||||+.         +.++|+|.
T Consensus       249 -----------------------------~g~---~~l~e~~e~i~~~Tr~yAKRQ~TWfr~~---------~~~~w~~~  287 (300)
T PRK14729        249 -----------------------------RPC---YMLNDIINLIVKNSFLYVKRQMTFFAKI---------PNVLWFHP  287 (300)
T ss_pred             -----------------------------cCC---CCHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCCeeecC
Confidence                                         123   6799999999999999999999999987         46889997


Q ss_pred             CC
Q psy10921        162 TD  163 (269)
Q Consensus       162 t~  163 (269)
                      ++
T Consensus       288 ~~  289 (300)
T PRK14729        288 DD  289 (300)
T ss_pred             CC
Confidence            43

>PLN02840 tRNA dimethylallyltransferase

Probab=99.94  E-value=3.5e-26  Score=219.70  Aligned_cols=126  Identities=18%  Similarity=0.286  Sum_probs=98.1

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHH--hhHHHHHHHHHHh-hcccccccCCCCCCcCCccccccHHHHHHHHhhhc
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQ--NGLIEELLQFHRQ-YNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSD   78 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~--~GLldEv~~l~~~-~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~   78 (269)
                      +|++++|||++++++|++||+.||+.||+  +||++||+.|++. +.++          ..+++||||||||++||....
T Consensus       231 ~y~~~~i~L~~dR~~Ly~RI~~Rvd~Ml~~~~GLleEV~~Ll~~g~~~~----------~~~a~~aIGYkE~~~yL~~~~  300 (421)
T PLN02840        231 DYDFLCFFLSSPRLDLYRSIDLRCEEMLAGTNGILSEASWLLDLGLLPN----------SNSATRAIGYRQAMEYLLQCR  300 (421)
T ss_pred             CCCeEEEEeCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHcCCCcc----------ccchHHHhcHHHHHHHHHhhc
Confidence            48999999999999999999999999999  9999999999975 2211          258999999999999996321


Q ss_pred             cCCCCCccccchhhhcccccchhhcccCCCccccccccccHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy10921         79 QDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNK---SLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPP  155 (269)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~e---aie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~  155 (269)
                      ..                              .|+   ..+++   +++.++.+||||||||+||||+.         +.
T Consensus       301 ~~------------------------------~G~---~s~ee~~~~~e~i~~~TRqYAKRQ~TWFR~~---------~~  338 (421)
T PLN02840        301 QN------------------------------GGE---SSPQEFLAFLSKFQTASRNFAKRQMTWFRNE---------PI  338 (421)
T ss_pred             cc------------------------------CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CC
Confidence            10                              123   55665   55999999999999999999987         46


Q ss_pred             eEEecCCCcchhhhhhHHHHHHHHHHHhccC
Q psy10921        156 VYSLNCTDLTTWAQSVTAPALHIVQSYLDNR  186 (269)
Q Consensus       156 i~~lD~t~~~~W~~~V~~~A~~iv~~fl~~~  186 (269)
                      ++|+|.++.       .+.+++.+..+..+.
T Consensus       339 ~~w~~~~~~-------~~~i~~~i~~~~~~~  362 (421)
T PLN02840        339 YHWLDASQP-------LEKILQFIYDAYHSR  362 (421)
T ss_pred             CeEecCCCC-------HHHHHHHHHHHHhcC
Confidence            899997543       223445555555433

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=3.3e-26  Score=212.02  Aligned_cols=104  Identities=31%  Similarity=0.468  Sum_probs=94.3

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hcccccccCCCCCCcCCccccccHHHHHHHHhhhccC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQ-YNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQD   80 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~-~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~   80 (269)
                      +|++++|||.+++++|+.||+.|||.|+++||++||+.||.. +..+           .+++|+||||||.+||.     
T Consensus       188 ~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~~~-----------~~~~~~iGy~e~~~yl~-----  251 (308)
T COG0324         188 PYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLHLD-----------LPAMQAIGYKEILAYLD-----  251 (308)
T ss_pred             CcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCcc-----------chHHHhcCHHHHHHHHh-----
Confidence            689999999999999999999999999999999999999986 4433           89999999999999993     


Q ss_pred             CCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921         81 RQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN  160 (269)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD  160 (269)
                                                     |.   ..+++|++.++.+||||||||+|||||++         .+.|+|
T Consensus       252 -------------------------------g~---~~~~ea~~~~~~~TRqyAKRQ~TWfr~~~---------~~~w~~  288 (308)
T COG0324         252 -------------------------------GG---ISLEEAIERIKTATRQYAKRQLTWFRNQL---------GVHWLD  288 (308)
T ss_pred             -------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhccCc---------ccceec
Confidence                                           33   67999999999999999999999999984         688999


Q ss_pred             CCCc
Q psy10921        161 CTDL  164 (269)
Q Consensus       161 ~t~~  164 (269)
                      ....
T Consensus       289 ~~~~  292 (308)
T COG0324         289 SESP  292 (308)
T ss_pred             cCCc
Confidence            8754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.55  E-value=2.8e-08  Score=60.03  Aligned_cols=27  Identities=44%  Similarity=0.949  Sum_probs=25.3

Q ss_pred             ccccccCcccccCHHHHHHHhhhhHHH
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSVKHR  234 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hr  234 (269)
                      +|+|++|++.|.++.+|+.|++|++||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            589999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.50  E-value=8.7e-08  Score=60.76  Aligned_cols=32  Identities=31%  Similarity=0.618  Sum_probs=29.9

Q ss_pred             ccccccCcccccCHHHHHHHhhhhHHHHHhHH
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVK  239 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk  239 (269)
                      .|+|++|+++|.+..+|..|++|++|++++++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58899999999999999999999999998875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.17  E-value=1.1e-06  Score=51.60  Aligned_cols=25  Identities=44%  Similarity=0.951  Sum_probs=24.2

Q ss_pred             cccccCcccccCHHHHHHHhhhhHH
Q psy10921        209 FNCDVCNRLFIGQHQYEQHMNSVKH  233 (269)
Q Consensus       209 ~~Ce~C~~~~~ge~eW~~HlkSr~H  233 (269)
                      |+|++|++.+.++.+|++|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999998

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.93  E-value=0.0009  Score=43.78  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             cccccccCcccccCH--HHHHHHhhhhHHHHHhHH
Q psy10921        207 GTFNCDVCNRLFIGQ--HQYEQHMNSVKHRRMKVK  239 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge--~eW~~HlkSr~Hrk~~kk  239 (269)
                      .+|+||.|++.|..+  ..+..|..|.+|+.++++
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            369999999998443  489999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG0717|consensus

Probab=96.43  E-value=0.0024  Score=62.41  Aligned_cols=38  Identities=29%  Similarity=0.611  Sum_probs=34.7

Q ss_pred             ccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHHhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQ  245 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~~~  245 (269)
                      .++|-+|+++|-.+.+|..|.+|++|++++...++..+
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemE  329 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEME  329 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999887443

>KOG3408|consensus

Probab=96.00  E-value=0.0056  Score=49.80  Aligned_cols=37  Identities=27%  Similarity=0.600  Sum_probs=34.3

Q ss_pred             CCcccccccCcccccCHHHHHHHhhhhHHHHHhHHHH
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKME  241 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~k  241 (269)
                      ...+|+|=.|.+-|+.+.....|.+|+.||+|+|..+
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            3479999999999999999999999999999999865

>KOG3032|consensus

Probab=95.57  E-value=0.013  Score=52.73  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=32.4

Q ss_pred             CCCcccccccCcccccCHHHHHHHhhhhHHHHHhHHHH
Q psy10921        204 YNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKME  241 (269)
Q Consensus       204 ~~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~k  241 (269)
                      +...+-+|-+|+..+- +.-|..|+.||+||-++-+.|
T Consensus        31 n~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   31 NESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            4456889999998877 899999999999999988777

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.32  E-value=0.013  Score=33.31  Aligned_cols=22  Identities=23%  Similarity=0.803  Sum_probs=20.7

Q ss_pred             cccccCcccccCHHHHHHHhhh
Q psy10921        209 FNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       209 ~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      |.|+.|++++.....+..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG4727|consensus

Probab=94.76  E-value=0.017  Score=49.64  Aligned_cols=33  Identities=30%  Similarity=0.602  Sum_probs=29.3

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVK  239 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk  239 (269)
                      .-|+|+||+-++---.++--|++++.|.+++.-
T Consensus        74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm  106 (193)
T KOG4727|consen   74 GGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM  106 (193)
T ss_pred             CceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence            569999999998888999999999999997643

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.32  E-value=0.033  Score=31.15  Aligned_cols=22  Identities=32%  Similarity=0.868  Sum_probs=18.3

Q ss_pred             cccccCcccccCHHHHHHHhhh
Q psy10921        209 FNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       209 ~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      |.|++|+..+....+|..|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5799999999999999999874

...

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=93.94  E-value=0.03  Score=38.72  Aligned_cols=29  Identities=31%  Similarity=0.558  Sum_probs=23.4

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKV  238 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~k  238 (269)
                      +.-+||.|...+   ...+.|+.|++||+-..
T Consensus         4 k~GYCE~Cr~kf---d~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        4 KPGYCENCREKY---DDLETHLLSEKHRRFAE   32 (49)
T ss_pred             CCcccccHhHHH---hhHHHHhccHHHHHHHc
Confidence            567999999665   46889999999998554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.72  E-value=0.043  Score=32.32  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=20.9

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+.....|..|+++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            37899999999999999999964

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=93.62  E-value=0.38  Score=43.37  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             ceEEEEEeC-ChHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHhhcccccccCCCCCCcCCccccc-cHHHHHHHHhh
Q psy10921          4 NLKFTVNHL-NSEVLDKRLEGRVHTMIQN-----GLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSI-GFKEFHNYLML   76 (269)
Q Consensus         4 ~~l~~wL~~-~~~vL~~RLd~RVd~Mi~~-----GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaI-GyKEf~~yL~~   76 (269)
                      ..-+.-+.. +++....|+-+||.+|+.-     +||+|+..+...-.            .+.++.+| ||+-.+.|...
T Consensus       117 ~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~Sll~EL~~lW~~p~------------~r~~ledIdGyr~~i~~a~~  184 (233)
T PF01745_consen  117 RWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPSLLEELVALWNDPA------------LRPILEDIDGYRYIIRFARK  184 (233)
T ss_dssp             EEEEEE-----HHHHHHHHHHHHHHHHS--SSS--HHHHHHHHHTSTT------------HHHHHTTSTTHHHHHHHHHH
T ss_pred             eEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhCcc------------ccchHhhhccHHHHHHHHHH
Confidence            334444554 5789999999999999974     89999999995321            26677776 99999999875


Q ss_pred             hccCCCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10921         77 SDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWV  141 (269)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWi  141 (269)
                      ..-..+.                     +.+   -..   ...++.+..|-..--.||..|.+=|
T Consensus       185 ~~v~~~~---------------------l~~---~~~---~~~~~Li~~ia~eY~~ha~~QEq~F  222 (233)
T PF01745_consen  185 HQVTPDQ---------------------LLS---IDL---DMLQELIEGIAEEYLEHAQWQEQEF  222 (233)
T ss_dssp             TT--GGG---------------------CCG----TH---HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hCCCHHH---------------------HHH---hhH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4211100                     000   011   4577788888888899999998743

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.06  E-value=0.068  Score=36.94  Aligned_cols=28  Identities=29%  Similarity=0.609  Sum_probs=22.8

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMK  237 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~  237 (269)
                      +.-+||.|...+   ...+.|+.|++||+-+
T Consensus         4 k~GYCE~C~~ky---~~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    4 KPGYCENCRVKY---DDLEEHIQSEKHRKFA   31 (49)
T ss_pred             CCccCccccchh---hhHHHHhCCHHHHHHH
Confidence            567899999665   4689999999998754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=92.77  E-value=0.062  Score=42.92  Aligned_cols=37  Identities=24%  Similarity=0.488  Sum_probs=33.5

Q ss_pred             CcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      -.+++|-.|.+.|..+..--.|.+|+-||+++|-.+-
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            3689999999999999999999999999999887653

>KOG2785|consensus

Probab=91.95  E-value=0.079  Score=50.84  Aligned_cols=36  Identities=28%  Similarity=0.524  Sum_probs=33.2

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      ..++|++|++.+......+.|++||+|+..+++.-+
T Consensus        67 ~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   67 SVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             cceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            568999999999999999999999999999888666

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=91.82  E-value=0.083  Score=50.36  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      ..++|.+|++.|-.-.-++.|+.|++|.|..+++.-
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            578999999999888899999999999998877654

>smart00355 ZnF_C2H2 zinc finger

Probab=91.02  E-value=0.21  Score=27.96  Aligned_cols=21  Identities=24%  Similarity=0.803  Sum_probs=19.5

Q ss_pred             cccccCcccccCHHHHHHHhh
Q psy10921        209 FNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       209 ~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|+.|+..+.+...+..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            579999999999999999997

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=90.56  E-value=0.12  Score=38.79  Aligned_cols=31  Identities=29%  Similarity=0.715  Sum_probs=26.2

Q ss_pred             ccccccCcccccCHHHHHHHhhhhHHHHHhH
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKV  238 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~k  238 (269)
                      .+.|.+|++.+.....+..|++++.|.+...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5899999999999999999999999987654

>KOG0227|consensus

Probab=89.34  E-value=0.25  Score=43.38  Aligned_cols=39  Identities=21%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHHh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQL  244 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~~  244 (269)
                      -.+|.|-.|...-+.+..+..|.+||+|.-++.++-..+
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e   89 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKE   89 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHH
Confidence            368999999999999999999999999998776554443

>PTZ00448 hypothetical protein; Provisional

Probab=88.31  E-value=0.4  Score=46.08  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             ccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHH
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQ  243 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~  243 (269)
                      .++|..|+..|....+-..|.||==||+++|++-+.
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~g  349 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARK  349 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcC
Confidence            588999999999999999999999999999987543

>KOG3454|consensus

Probab=86.77  E-value=0.35  Score=41.44  Aligned_cols=43  Identities=23%  Similarity=0.469  Sum_probs=30.8

Q ss_pred             ccccccCcccccCH--HHHHHHhhhhHHHHHhHH-----HHHHhhhhhhh
Q psy10921        208 TFNCDVCNRLFIGQ--HQYEQHMNSVKHRRMKVK-----MERQLQHILRN  250 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge--~eW~~HlkSr~Hrk~~kk-----~kk~~~~~~~~  250 (269)
                      +|+||-|+.-++-+  ..-..|..||+|+.++|-     .+..++.+++.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqAq~liD~   52 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQAQKLIDE   52 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999655543  478899999999998853     33444554443

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=85.10  E-value=0.27  Score=43.43  Aligned_cols=34  Identities=18%  Similarity=0.539  Sum_probs=0.0

Q ss_pred             CCcccccccCc-ccccCHHHHHHHhhhhHHHHHhH
Q psy10921        205 NAGTFNCDVCN-RLFIGQHQYEQHMNSVKHRRMKV  238 (269)
Q Consensus       205 ~~~~~~Ce~C~-~~~~ge~eW~~HlkSr~Hrk~~k  238 (269)
                      ....|.||||+ .+..|....+.|...-+|-.-++
T Consensus        98 L~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~Glr  132 (196)
T PF11931_consen   98 LGVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLR  132 (196)
T ss_dssp             -----------------------------------
T ss_pred             CCCeeeeEeCCCcceecHHHHHHhcChhHHHccCh
Confidence            45789999997 78889999999999999987443

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=80.98  E-value=1.4  Score=38.59  Aligned_cols=35  Identities=20%  Similarity=0.507  Sum_probs=31.6

Q ss_pred             CcccccccCcccccCHHHHHHHhhhhHHHHHhHHH
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM  240 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~  240 (269)
                      -.+|.|-.|..+-..+..+..|+.|++|+-++.++
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            36899999999999999999999999999888766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3eph_A	409	Crystallographic Snapshots Of Eukaryotic Dimethylal		6e-11

>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 58/251 (23%)
Query: 2   ELNLKFTVNHL----NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDY 57
           ++ LKF    L      E L +RL+ RV  M++ G ++E+ Q +  Y++++      P+ 
Sbjct: 182 KITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNK----FTPEQ 237
Query: 58  TKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGRE 117
            +                             G++Q IGFKEF  +L       ++D    
Sbjct: 238 CEN----------------------------GVWQVIGFKEFLPWLT-----GKTDDNTV 264
Query: 118 IFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALH 177
                ++ +     QYAK+Q +W++  L+  PD +   +Y L+ TDL+ W  + +  A+ 
Sbjct: 265 KLEDCIERMKTRTRQYAKRQVKWIKKMLI--PD-IKGDIYLLDATDLSQWDTNASQRAIA 321
Query: 178 IVQSYLDN------RAPTGIEPLAQ--EYVDPSYYNAGTFNCDVC------NRLFIGQHQ 223
           I   ++ N      RAP  +E L    E       +   + C+VC      N + IG+  
Sbjct: 322 ISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKY 381
Query: 224 YEQHMNSVKHR 234
           ++ H+ S +H+
Sbjct: 382 WKIHLGSRRHK 392

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	1e-33
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	2e-22
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	7e-05
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	9e-05
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	7e-04

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score =  125 bits (316), Expect = 1e-33
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 54/246 (21%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           E L +RL+ RV  M++ G ++E+ Q +  Y+++   K        G++Q IGFKEF  +L
Sbjct: 199 EPLFQRLDDRVDDMLERGALQEIKQLYEYYSQN---KFTPEQCENGVWQVIGFKEFLPWL 255

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
                                               ++D         ++ +     QYA
Sbjct: 256 ----------------------------------TGKTDDNTVKLEDCIERMKTRTRQYA 281

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRA-PTGIEP 193
           K+Q +W++  L+         +Y L+ TDL+ W  + +  A+ I   ++ NR       P
Sbjct: 282 KRQVKWIKKMLIPDIK---GDIYLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAP 338

Query: 194 LAQEYVDPSYYNAGT-------FNCDVC------NRLFIGQHQYEQHMNSVKHRRMKVKM 240
            A E +                + C+VC      N + IG+  ++ H+ S +H+    + 
Sbjct: 339 KALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRN 398

Query: 241 ERQLQH 246
            RQ   
Sbjct: 399 TRQADF 404

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 44/183 (24%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
           +VL   L  RV  M++ G+ +EL +F+   +ED      +     G+ ++IG  EF  Y 
Sbjct: 185 KVLTDYLAKRVDDMLELGMFDELAEFYSPEDED---HDEDSATRTGLRKAIGVPEFDRYF 241

Query: 75  MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
                                 ++F    +  +        R  F +++ A+       A
Sbjct: 242 ----------------------EKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLA 279

Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT--------------TWAQSVTAPALHIVQ 180
           K+Q   +              +  L+ T+                 W + V  P++ IV 
Sbjct: 280 KRQIGKILRL-----KGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 334

Query: 181 SYL 183
            +L
Sbjct: 335 RFL 337

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 5   LKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQS 64
            +F +   + E+L +R+E R H M+ +G   E+     + +       L  D      + 
Sbjct: 198 HQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGD-------LHTDLP--SIRC 248

Query: 65  IGFKEFHNYL 74
           +G+++  +YL
Sbjct: 249 VGYRQMWSYL 258

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 5   LKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQS 64
            +  +     +VL  R+  R   M++ G I E+   H + +       L         ++
Sbjct: 204 AQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSD-------LHAGLP--SIRA 254

Query: 65  IGFKEFHNYL 74
           +G+++  +YL
Sbjct: 255 VGYRQVWDYL 264

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 15/62 (24%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGI--FQSIGFKEFHN 72
           E L  R+  RV  M+ +GL  E+             + L     +     Q+IG+KE   
Sbjct: 208 ETLYLRINKRVDIMLGHGLFNEV-------------QHLVEQGFEASQSMQAIGYKELVP 254

Query: 73  YL 74
            +
Sbjct: 255 VI 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 40/319 (12%), Positives = 92/319 (28%), Gaps = 113/319 (35%)

Query: 1   MELNLKFTVNHLNSEVLDKRLEG-----RVHTMIQNGLIEEL--LQFHRQYNEDRIGK-- 51
             L LK+    L+    D   E      R  ++I   + + L      +  N D++    
Sbjct: 304 KSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 52  -----QLEPDYTKGIFQSIG-F---------------------------KEFHNYLMLSD 78
                 LEP   + +F  +  F                            + H Y ++  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-- 417

Query: 79  QDRQEPDYTKGI--------FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALV--- 127
            ++Q  + T  I         +       H  ++   +  ++    ++    LD      
Sbjct: 418 -EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 128 ----LANVQYAKKQN---------QWVRNRLLKCPDRMVPPVYSLNC-TDLTTWAQSVTA 173
               L N+++ ++           +++  ++             LN    L  +      
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---- 532

Query: 174 PALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKH 233
              +I     DN      +P  +  V+            + +  F+   + E+++   K+
Sbjct: 533 ---YIC----DN------DPKYERLVN-----------AILD--FL--PKIEENLICSKY 564

Query: 234 RRMKVKMERQLQHILRNQD 252
             +       L+  L  +D
Sbjct: 565 TDL-------LRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 41/300 (13%), Positives = 80/300 (26%), Gaps = 97/300 (32%)

Query: 36  ELLQFHRQY------NEDRIGKQLE----PDYTKGIFQSIGFKEFHNYLMLSDQDRQEPD 85
           E  +   QY       ED      +     D  K I      +E  + +M  D       
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---EEIDHIIMSKDAVSG--- 63

Query: 86  YTKGIF------QSIGFKEF------HNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
            T  +F      Q    ++F       NY  L    +   +             +    Y
Sbjct: 64  -TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS----------MMTRMY 112

Query: 134 AKKQNQWVRNRLLKCPDRMVP-PVYSLNC-TDLTTWAQSV----------------TAPA 175
            ++     R+RL           V  L     L      +                T  A
Sbjct: 113 IEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 176 LHIVQSY-LDNRAPTGI---------------EPLAQEYVDPSYYNAGTFNCDVCNRLFI 219
           L +  SY +  +    I               E L +             + +  +R   
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--------IDPNWTSRSDH 219

Query: 220 GQHQYEQHMNSVKHRRMKVKMERQLQH---ILRN-QDPRDTKV--IGDKL----RDQATT 269
             +  +  ++S++    ++   +  ++   +L N Q+ +      +  K+    R +  T
Sbjct: 220 SSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 15/62 (24%)

Query: 15  EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGI--FQSIGFKEFHN 72
           +VL  R+  RV  M++ GLI+E              K+L     +     Q+IG+KE ++
Sbjct: 202 DVLYDRINRRVDQMVEEGLIDEA-------------KKLYDRGIRDCQSVQAIGYKEMYD 248

Query: 73  YL 74
           YL
Sbjct: 249 YL 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	100.0
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	100.0
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	99.97
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	99.96
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.96
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.35
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.42
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.37
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.51
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.41
1ard_A	29	Yeast transcription factor ADR1; transcription reg	92.08
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	91.8
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	91.58
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	91.34
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	91.07
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	90.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	90.64
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	90.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	90.31
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.21
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	89.85
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.83
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.63
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.54
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	89.41
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	88.96
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	89.12
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	89.03
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	88.8
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.61
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.5
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	88.39
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	88.04
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	87.29
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	87.39
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	87.25
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.16
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	87.07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.86
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	86.79
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	86.69
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.65
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	86.65
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.64
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.36
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.36
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.32
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.26
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.19
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	86.24
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.13
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.12
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.11
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.07
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	86.02
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.01
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	85.99
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.97
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.91
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.87
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.85
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.85
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.84
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.81
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.79
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.66
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	85.63
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.6
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.6
1paa_A	30	Yeast transcription factor ADR1; transcription reg	85.58
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.58
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.57
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.57
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.55
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	85.51
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	85.46
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	85.38
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.38
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.37
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.37
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.32
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	85.28
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.23
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.18
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.01
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.01
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.92
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	84.89
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	84.86
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.85
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.73
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	84.71
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.51
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	84.46
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	84.45
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	84.35
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.24
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	84.21
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	84.18
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.17
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	84.17
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.17
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	84.14
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	84.01
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.98
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.93
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	83.92
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.91
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	83.9
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.9
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.89
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.89
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.86
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.76
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.7
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.68
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.5
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	83.5
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	83.49
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.21
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.14
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	83.1
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.79
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.58
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.26
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.08
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	81.96
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	81.79
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	81.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	81.34
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	81.2
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	81.05
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	80.99
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	80.98
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	80.94
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	80.8
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	80.77
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	80.54
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	80.13

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=100.00  E-value=2e-52  Score=399.27  Aligned_cols=205  Identities=24%  Similarity=0.471  Sum_probs=168.3

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++|||.||++||++||+.|++.+......   ..+++.|++||||||||.+||.+...  
T Consensus       186 ~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~---~~~~~~~~~~aIGYkE~~~yL~g~~~--  260 (409)
T 3eph_A          186 KFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFT---PEQCENGVWQVIGFKEFLPWLTGKTD--  260 (409)
T ss_dssp             SSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCC---GGGTTSGGGGSTTTGGGGGGGC------
T ss_pred             CcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhccccccc---cccccccchhcccHHHHHHHHcCCCc--
Confidence            5899999999999999999999999999999999999999875321000   11356899999999999999964200  


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                                   ..+   ..+++|++.++.+||||||||+||||+++++.+.   +++||||+
T Consensus       261 -----------------------------~~e---~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~---~~i~~lD~  305 (409)
T 3eph_A          261 -----------------------------DNT---VKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIK---GDIYLLDA  305 (409)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT---TCEEEEEC
T ss_pred             -----------------------------ccc---cCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---CceEEEcC
Confidence                                         112   5699999999999999999999999999988754   57999999


Q ss_pred             CCcchhhhhhHHHHHHHHHHHhccCCCC---CCCcccc-----ccCCCCCCCCcccccccCcc------cccCHHHHHHH
Q psy10921        162 TDLTTWAQSVTAPALHIVQSYLDNRAPT---GIEPLAQ-----EYVDPSYYNAGTFNCDVCNR------LFIGQHQYEQH  227 (269)
Q Consensus       162 t~~~~W~~~V~~~A~~iv~~fl~~~~p~---~~~~l~~-----~~~~~~~~~~~~~~Ce~C~~------~~~ge~eW~~H  227 (269)
                      |+++.|+++|.+||++||++||+|.+.+   .++.++.     .....+.+.|++|+||+|++      +++|+++|++|
T Consensus       306 t~~~~W~~~V~~pa~~iv~~fl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Ce~C~~~~~~~~~~~ge~~W~~H  385 (409)
T 3eph_A          306 TDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIH  385 (409)
T ss_dssp             SCTTTCTTTTHHHHHHHHHHHHTTCCCCSCSSCGGGGGGGSGGGTGGGSCCCCCEEEEEEEECTTSCEEEEESHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHhccccccccccccccceeCCCCCCCCCCcceEEcHHHHHHH
Confidence            9999999999999999999999997522   2333321     11111236899999999998      99999999999


Q ss_pred             hhhhHHHHHhHHHHHHhhh
Q psy10921        228 MNSVKHRRMKVKMERQLQH  246 (269)
Q Consensus       228 lkSr~Hrk~~kk~kk~~~~  246 (269)
                      ++||+||+++++++|+++.
T Consensus       386 ~ksr~Hk~~~~~~~k~~~~  404 (409)
T 3eph_A          386 LGSRRHKSNLKRNTRQADF  404 (409)
T ss_dssp             HTSHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhh
Confidence            9999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=100.00  E-value=2.3e-33  Score=262.40  Aligned_cols=153  Identities=24%  Similarity=0.345  Sum_probs=121.2

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++||+.|+++||++||+.|+..+...   ...+.+++.|++||||||||++||.+.....
T Consensus       172 ~~~~~~i~L~~~re~L~~RI~~R~~~Ml~~Gl~eEv~~L~~~~~~~---~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~  248 (339)
T 3a8t_A          172 RYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDED---HDEDSATRTGLRKAIGVPEFDRYFEKFRPGD  248 (339)
T ss_dssp             SSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHCCTTCSC---TTSCGGGSCGGGGSTTHHHHHHHHHHSCTTC
T ss_pred             ccCeEEEEEeCCHHHHHHHHHhhccHhhhccHHHHHHHHHHhcCcc---ccccchhccHHHHHhhHHHHHHHHcCccccc
Confidence            5789999999999999999999999999999999999999643211   0112346699999999999999998632100


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                      ...+                   -..++..++   .++++|++.+|.+||||||||+||||+..  .   ..|++++||+
T Consensus       249 ~~~~-------------------~~~~~~~~~---~~l~eaie~ik~~TR~yAKRQ~tWfr~~~--~---~~w~i~~lDa  301 (339)
T 3a8t_A          249 VEGE-------------------DPGRDRVRR---GAFEEAVRAIKENTCHLAKRQIGKILRLK--G---AGWDLRRLDA  301 (339)
T ss_dssp             CCCS-------------------CCTTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T---SCCCEEEEEC
T ss_pred             cccc-------------------ccccchhhh---cCHHHHHHHHHHHHHHHHHHHHHHHccCC--C---CCCceeeecc
Confidence            0000                   000112334   78999999999999999999999999873  2   3489999999


Q ss_pred             CCc--------------chhhhhhHHHHHHHHHHHhc
Q psy10921        162 TDL--------------TTWAQSVTAPALHIVQSYLD  184 (269)
Q Consensus       162 t~~--------------~~W~~~V~~~A~~iv~~fl~  184 (269)
                      |++              +.|.++|++||++||++||.
T Consensus       302 t~~~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~  338 (339)
T 3a8t_A          302 TESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRFLD  338 (339)
T ss_dssp             HHHHHHHHSTTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ccchhhhhhccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence            986              58999999999999999996

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=99.97  E-value=9.2e-30  Score=236.11  Aligned_cols=119  Identities=26%  Similarity=0.393  Sum_probs=100.4

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++|||.||++||++||+.|++.+..           ..+++||||||||.+||.      
T Consensus       189 ~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~-----------~~~a~~aIGYkE~~~yL~------  251 (322)
T 3exa_A          189 PYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRGIR-----------DCQSVQAIGYKEMYDYLD------  251 (322)
T ss_dssp             CSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCC-----------SSTGGGSTTTHHHHHHHH------
T ss_pred             CCceEEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCC-----------cCccceeeeHHHHHHHHC------
Confidence            589999999999999999999999999999999999999976411           278999999999999994      


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                                    |+   .++++|++.++.+||||||||+||||++         +.++|+|.
T Consensus       252 ------------------------------G~---~sl~eaie~i~~~TR~yAKRQ~TWfR~~---------~~~~w~~~  289 (322)
T 3exa_A          252 ------------------------------GN---VTLEEAIDTLKRNSRRYAKRQLTWFRNK---------ANVTWFDM  289 (322)
T ss_dssp             ------------------------------TS---SCHHHHHHHHHHHHHHHHHHHHHHHHTS---------TTEEEEEC
T ss_pred             ------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCeEeCC
Confidence                                          34   7899999999999999999999999998         57999998


Q ss_pred             CCcchhhhhhHHHHHHHHHH
Q psy10921        162 TDLTTWAQSVTAPALHIVQS  181 (269)
Q Consensus       162 t~~~~W~~~V~~~A~~iv~~  181 (269)
                      ++.  -.+.+++...+.+..
T Consensus       290 ~~~--~~~~i~~~i~~~~~~  307 (322)
T 3exa_A          290 TDV--DFDKKIMEIHNFIAG  307 (322)
T ss_dssp             TTC--CHHHHHHHHHHHHHH
T ss_pred             CCC--CHHHHHHHHHHHHHH
Confidence            764  234454444444443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=99.96  E-value=2.8e-29  Score=232.43  Aligned_cols=108  Identities=20%  Similarity=0.307  Sum_probs=95.1

Q ss_pred             CCceEEEEEeC-ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccC
Q psy10921          2 ELNLKFTVNHL-NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQD   80 (269)
Q Consensus         2 ~~~~l~~wL~~-~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~   80 (269)
                      +|++++|||++ ++++|++||++|||.||++||++||+.|++.+.-         +...+++|+||||||.+||.     
T Consensus       194 ~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~---------~~~~~~~~aIGYkE~~~yL~-----  259 (316)
T 3foz_A          194 PYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDL---------HTDLPSIRCVGYRQMWSYLE-----  259 (316)
T ss_dssp             SSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCC---------CTTSTTTTSTTHHHHHHHHH-----
T ss_pred             CCceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC---------CccCccceeeehhhHHHHhc-----
Confidence            58999999999 9999999999999999999999999999986311         11278999999999999994     


Q ss_pred             CCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921         81 RQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN  160 (269)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD  160 (269)
                                                     |+   .++++|++.++.+||||||||+||||+.         +.++|+|
T Consensus       260 -------------------------------G~---~s~~eai~~~~~~TR~yAKRQ~TWfR~~---------~~~~w~~  296 (316)
T 3foz_A          260 -------------------------------GE---ISYDEMVYRGVCATRQLAKRQITWLRGW---------EGVHWLD  296 (316)
T ss_dssp             -------------------------------TS---SCHHHHHHHHHHHHHHHHHHHHHHHHSC---------SSCEEEE
T ss_pred             -------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCeEeC
Confidence                                           34   7899999999999999999999999987         5799999


Q ss_pred             CCCcch
Q psy10921        161 CTDLTT  166 (269)
Q Consensus       161 ~t~~~~  166 (269)
                      .++.+.
T Consensus       297 ~~~~~~  302 (316)
T 3foz_A          297 SEKPEQ  302 (316)
T ss_dssp             TTCHHH
T ss_pred             CcChHH
Confidence            877543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.96  E-value=5e-29  Score=231.90  Aligned_cols=119  Identities=18%  Similarity=0.294  Sum_probs=99.7

Q ss_pred             CCceEEEEEeCC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccC
Q psy10921          2 ELNLKFTVNHLN-SEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQD   80 (269)
Q Consensus         2 ~~~~l~~wL~~~-~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~   80 (269)
                      +|++++|||+++ +++|++||++|||.||++||++||+.|+..+.-         ....+++||||||||.+||.     
T Consensus       200 ~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~---------~~~~~~~~aIGyke~~~yl~-----  265 (323)
T 3crm_A          200 PYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDL---------HAGLPSIRAVGYRQVWDYLD-----  265 (323)
T ss_dssp             CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHTCTTC---------CTTSSGGGSTTHHHHHHHHT-----
T ss_pred             CCceEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCC---------CCCCcchheecHHHHHHHHc-----
Confidence            488999999997 999999999999999999999999999964210         11378999999999999993     


Q ss_pred             CCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921         81 RQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN  160 (269)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD  160 (269)
                                                     |+   .++++|++.++.+||||||||+||||+.         +.++|+|
T Consensus       266 -------------------------------g~---~~~~eai~~~~~~Tr~yAKRQ~TWfr~~---------~~~~w~~  302 (323)
T 3crm_A          266 -------------------------------GK---LSYAEMTERGIIATRQLAKRQFTWLRSW---------SHLHWMD  302 (323)
T ss_dssp             -------------------------------TS---SCHHHHHHHHHHHHHHHHHHHHHHHHTC---------SSCEEEE
T ss_pred             -------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCeEec
Confidence                                           34   7899999999999999999999999987         4799999


Q ss_pred             CCCcchhhhhhHHHHHHHHHHH
Q psy10921        161 CTDLTTWAQSVTAPALHIVQSY  182 (269)
Q Consensus       161 ~t~~~~W~~~V~~~A~~iv~~f  182 (269)
                      .++.+     +.+.+++++..|
T Consensus       303 ~~~~~-----~~~~~~~~~~~~  319 (323)
T 3crm_A          303 SLAGD-----NLPRALRYLKTV  319 (323)
T ss_dssp             TTCSC-----HHHHHHHHHHHT
T ss_pred             CCCch-----HHHHHHHHHHHh
Confidence            76542     445556666654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.96  E-value=1.5e-28  Score=230.00  Aligned_cols=102  Identities=25%  Similarity=0.369  Sum_probs=91.9

Q ss_pred             CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921          2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR   81 (269)
Q Consensus         2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~   81 (269)
                      +|++++|||++++++|++||++|||.||++||++||+.|++.+.          . ..+++||||||||++||.      
T Consensus       195 ~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~----------~-~~~~~~aIGyke~~~yl~------  257 (340)
T 3d3q_A          195 NYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGF----------E-ASQSMQAIGYKELVPVIK------  257 (340)
T ss_dssp             CSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTC----------T-TSSGGGSTTTTTHHHHHH------
T ss_pred             CCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCC----------C-cchhhhhccHHHHHHHHc------
Confidence            48999999999999999999999999999999999999997531          1 278999999999999994      


Q ss_pred             CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921         82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC  161 (269)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~  161 (269)
                                                    |+   .++++|++.++.+||||||||+||||++         +.+.|+|.
T Consensus       258 ------------------------------g~---~~~~ea~~~~~~~Tr~yAKRQ~TWfr~~---------~~~~w~~~  295 (340)
T 3d3q_A          258 ------------------------------GN---ISMENAVEKLKQHSRQYAKRQLTWFKNK---------MNVHWLNK  295 (340)
T ss_dssp             ------------------------------TS---SCHHHHHHHHHHHHHHHHHHHHHHHHHT---------CCCEEEET
T ss_pred             ------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCeeecC
Confidence                                          34   7899999999999999999999999998         47999996


Q ss_pred             C
Q psy10921        162 T  162 (269)
Q Consensus       162 t  162 (269)
                      +
T Consensus       296 ~  296 (340)
T 3d3q_A          296 E  296 (340)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.35  E-value=1.4e-12  Score=116.16  Aligned_cols=109  Identities=14%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             CceEEEEEeCCh-HHHHHHHHHHHHHHHHh-----hHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhh
Q psy10921          3 LNLKFTVNHLNS-EVLDKRLEGRVHTMIQN-----GLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLML   76 (269)
Q Consensus         3 ~~~l~~wL~~~~-~vL~~RLd~RVd~Mi~~-----GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~   76 (269)
                      ++++++||+++. ++|.+|+.+|++.|+..     |+++|+..+++.-           +...++...+||+|+++|+..
T Consensus       116 ~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~e~~~~~~~p-----------~~~~~~~~~~g~~~~~~~l~~  184 (253)
T 2ze6_A          116 FQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAELWNYP-----------AARPILEDIDGYRCAIRFARK  184 (253)
T ss_dssp             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHTST-----------THHHHHTTSTTHHHHHHHHHH
T ss_pred             CceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhcCCc-----------chHHHHHHHhhHHHHHHHHHh
Confidence            567899999996 99999999999999887     9999999888531           112566778999999999964


Q ss_pred             hccCCCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy10921         77 SDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCP  149 (269)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~  149 (269)
                      ..-....                   +.     ..+.   .++.++++.++.+|++|||||.+||.+.+....
T Consensus       185 ~~~~~~~-------------------~~-----~~~~---~~~~~~i~~i~~~~~~~a~~q~~~~~~w~~~~~  230 (253)
T 2ze6_A          185 HDLAISQ-------------------LP-----NIDA---GRHVELIEAIANEYLEHALSQERDFPQWPEDGA  230 (253)
T ss_dssp             HTCCGGG-------------------GG-----GCCT---THHHHHHHHHHHHHHHHHHHHHHHSCCCCC---
T ss_pred             cCCCcch-------------------hh-----hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3211000                   00     0112   568899999999999999999999987764443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.42  E-value=8.9e-05  Score=59.52  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             CCcccccccCcccccCHHHHHHHhhhhHHHHHhHHH
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM  240 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~  240 (269)
                      ....++|++|++.|..+..+++|++||+|++++++.
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence            346799999999999999999999999999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.37  E-value=7.5e-05  Score=60.10  Aligned_cols=37  Identities=24%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      ..+|+|..|++.|.....+..|++|+.|+++++..+.
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            4689999999999999999999999999999988653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.51  E-value=0.0015  Score=52.32  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.1

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      +.++|.+|+..|..+.+-..|.+|++|++++++...
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            458999999999999999999999999999876543

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.41  E-value=0.0019  Score=47.61  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=27.7

Q ss_pred             ccccccCcccccC--HHHHHHHhhhhHHHHHhHHH
Q psy10921        208 TFNCDVCNRLFIG--QHQYEQHMNSVKHRRMKVKM  240 (269)
Q Consensus       208 ~~~Ce~C~~~~~g--e~eW~~HlkSr~Hrk~~kk~  240 (269)
                      +|+|+-|++.|..  ...+..|+.|++|+.+++.-
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            5899999999843  45699999999999988763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=92.08  E-value=0.099  Score=28.57  Aligned_cols=23  Identities=39%  Similarity=0.868  Sum_probs=20.6

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            58899999999999999999864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=91.80  E-value=0.12  Score=27.86  Aligned_cols=22  Identities=23%  Similarity=0.768  Sum_probs=19.8

Q ss_pred             cccccCcccccCHHHHHHHhhh
Q psy10921        209 FNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       209 ~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      |.|+.|++.+........|++.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            7899999999999999999854

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.58  E-value=0.11  Score=28.29  Aligned_cols=24  Identities=33%  Similarity=0.728  Sum_probs=20.9

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.+........|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            468999999999999999999764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.34  E-value=0.11  Score=28.49  Aligned_cols=24  Identities=17%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.+........|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            468999999999999999999753

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.07  E-value=0.14  Score=27.75  Aligned_cols=24  Identities=17%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.+........|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            468999999999999999999753

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.90  E-value=0.14  Score=27.81  Aligned_cols=23  Identities=17%  Similarity=0.580  Sum_probs=20.4

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            58899999999999999999854

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=90.64  E-value=0.15  Score=29.53  Aligned_cols=23  Identities=22%  Similarity=0.662  Sum_probs=20.5

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            58899999999999999999853

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=90.63  E-value=0.11  Score=28.39  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            58999999999999999999864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.31  E-value=0.17  Score=27.58  Aligned_cols=24  Identities=25%  Similarity=0.667  Sum_probs=20.9

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.+........|++.
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.21  E-value=0.2  Score=29.14  Aligned_cols=25  Identities=24%  Similarity=0.624  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=89.85  E-value=0.14  Score=48.52  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      ...+|..|++.|-++.-...|+.||+|.|++.+.+.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~  326 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN  326 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence            357899999999999999999999999998766433

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.83  E-value=0.19  Score=29.16  Aligned_cols=25  Identities=12%  Similarity=0.348  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.63  E-value=0.26  Score=28.46  Aligned_cols=24  Identities=25%  Similarity=0.521  Sum_probs=21.2

Q ss_pred             CcccccccCcccccCHHHHHHHhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .+.|.|++|++.|........|++
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHH
Confidence            357999999999999999999975

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=89.54  E-value=0.23  Score=28.43  Aligned_cols=24  Identities=17%  Similarity=0.610  Sum_probs=21.2

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.|........|++.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHHH
Confidence            579999999999999999999763

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=89.41  E-value=0.28  Score=28.19  Aligned_cols=24  Identities=21%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.|........|++.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999854

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.96  E-value=0.069  Score=28.84  Aligned_cols=23  Identities=22%  Similarity=0.706  Sum_probs=19.7

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            58999999999988888888753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=89.12  E-value=0.27  Score=28.68  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCCCCcccCcHHHHHHHHHH
Confidence            3579999999999999999999753

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=89.03  E-value=0.26  Score=29.35  Aligned_cols=24  Identities=29%  Similarity=0.688  Sum_probs=21.3

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.+........|++.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CceECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=88.80  E-value=0.19  Score=27.39  Aligned_cols=23  Identities=17%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            58899999999998889999763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.61  E-value=0.31  Score=28.30  Aligned_cols=25  Identities=28%  Similarity=0.739  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            3679999999999999999999753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.50  E-value=0.22  Score=29.08  Aligned_cols=24  Identities=21%  Similarity=0.688  Sum_probs=21.4

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.|........|++.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=88.39  E-value=0.19  Score=27.13  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            58899999999988889998753

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.07  E-value=0.3  Score=28.36  Aligned_cols=25  Identities=24%  Similarity=0.576  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHH
Confidence            3679999999999999999999753

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.04  E-value=0.37  Score=29.08  Aligned_cols=25  Identities=16%  Similarity=0.554  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.+........|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHh
Confidence            3679999999999999999999864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=87.29  E-value=0.11  Score=28.60  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             ccccccCcccccCHHHHHHHhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .|.|+.|++.+........|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            5889999999998888888875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.39  E-value=0.35  Score=29.65  Aligned_cols=25  Identities=20%  Similarity=0.514  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CcCeECCCCCcccCchHHHHHHHhH
Confidence            3679999999999999999999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.25  E-value=0.44  Score=28.58  Aligned_cols=24  Identities=21%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.+........|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999764

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.16  E-value=0.37  Score=29.69  Aligned_cols=24  Identities=21%  Similarity=0.521  Sum_probs=21.7

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            579999999999999999999864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=87.07  E-value=0.42  Score=28.66  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|.....+..|++.
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHhhh
Confidence            3579999999999999999999753

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.86  E-value=0.44  Score=28.88  Aligned_cols=25  Identities=16%  Similarity=0.519  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH
Confidence            3579999999999999999999854

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.79  E-value=0.41  Score=28.80  Aligned_cols=24  Identities=17%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .+.|.|+.|++.+........|++
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHH
Confidence            357999999999999999999985

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=86.69  E-value=0.35  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             cccccccCcccccCHHHHHHHhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|.|++|++.|........|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            57999999999999999999986

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.65  E-value=0.28  Score=28.69  Aligned_cols=24  Identities=17%  Similarity=0.573  Sum_probs=20.8

Q ss_pred             cccccccCcccccCH-HHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQ-HQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge-~eW~~HlkS  230 (269)
                      +.|.|+.|++.|... .....|++.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHHh
Confidence            579999999999998 889999753

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=86.65  E-value=0.49  Score=28.40  Aligned_cols=24  Identities=21%  Similarity=0.585  Sum_probs=21.5

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccCCCcChhhCCHHHHHHHHHh
Confidence            579999999999999999999854

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.64  E-value=0.41  Score=29.50  Aligned_cols=25  Identities=20%  Similarity=0.563  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhH
Confidence            3579999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.36  E-value=0.49  Score=28.68  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHhhh
Confidence            3579999999999999999999854

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.36  E-value=0.41  Score=29.44  Aligned_cols=25  Identities=20%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.32  E-value=0.41  Score=28.21  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             cccccccCcccccCHHHHHHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQH  227 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~H  227 (269)
                      +.|.|+.|++.+........|
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHH
Confidence            579999999999999999999

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.26  E-value=0.45  Score=29.20  Aligned_cols=23  Identities=17%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             cccccccCcccccCHHHHHHHhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|.|++|++.|.....+..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            57999999999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.19  E-value=0.45  Score=29.27  Aligned_cols=25  Identities=16%  Similarity=0.558  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999854

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=86.24  E-value=0.14  Score=28.13  Aligned_cols=24  Identities=21%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.+........|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            368999999999988888888753

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.13  E-value=0.36  Score=29.40  Aligned_cols=24  Identities=21%  Similarity=0.607  Sum_probs=21.6

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999864

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.12  E-value=0.49  Score=29.10  Aligned_cols=25  Identities=20%  Similarity=0.539  Sum_probs=22.2

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|.....+..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHHH
Confidence            3579999999999999999999865

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.11  E-value=0.42  Score=29.51  Aligned_cols=25  Identities=16%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCcccCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.07  E-value=0.5  Score=28.76  Aligned_cols=24  Identities=21%  Similarity=0.562  Sum_probs=21.7

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.+........|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.02  E-value=0.47  Score=28.40  Aligned_cols=25  Identities=16%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.01  E-value=0.57  Score=28.77  Aligned_cols=25  Identities=16%  Similarity=0.570  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHh
Confidence            3679999999999999999999854

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.99  E-value=0.56  Score=28.52  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.|........|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.97  E-value=0.43  Score=29.47  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|.....+..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            579999999999999999999753

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.91  E-value=0.43  Score=29.33  Aligned_cols=25  Identities=16%  Similarity=0.547  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCCeeccccCChhcCHHHHHHHHHH
Confidence            3579999999999999999999853

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.87  E-value=0.46  Score=29.37  Aligned_cols=25  Identities=24%  Similarity=0.561  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHh
Confidence            3679999999999999999999864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.85  E-value=0.44  Score=29.35  Aligned_cols=25  Identities=16%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.85  E-value=0.52  Score=28.93  Aligned_cols=25  Identities=28%  Similarity=0.713  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHHh
Confidence            3579999999999999999999754

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.84  E-value=0.58  Score=28.69  Aligned_cols=25  Identities=24%  Similarity=0.573  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=85.81  E-value=0.5  Score=29.16  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH
Confidence            3679999999999999999999853

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.79  E-value=0.52  Score=28.98  Aligned_cols=25  Identities=16%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|.....+..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCChhhCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.66  E-value=0.46  Score=29.37  Aligned_cols=25  Identities=20%  Similarity=0.545  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHH
Confidence            3579999999999999999999753

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=85.63  E-value=0.2  Score=32.25  Aligned_cols=27  Identities=30%  Similarity=0.605  Sum_probs=23.2

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKH  233 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~H  233 (269)
                      ..|.|+.|++.+........|+++..|
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            468999999999999999999876544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.60  E-value=0.46  Score=29.33  Aligned_cols=25  Identities=20%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECcccCCccCCHhHHHHHHHH
Confidence            3579999999999999999999854

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.60  E-value=0.5  Score=29.01  Aligned_cols=25  Identities=20%  Similarity=0.578  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCEECCCCChhhCChHHHHHHHHh
Confidence            3579999999999999999999853

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=85.58  E-value=0.37  Score=26.37  Aligned_cols=21  Identities=29%  Similarity=0.752  Sum_probs=18.5

Q ss_pred             ccccccCcccccCHHHHHHHh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHM  228 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~Hl  228 (269)
                      .|.|+.|++.+........|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            588999999999988888884

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=85.58  E-value=0.53  Score=29.03  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.57  E-value=0.47  Score=29.27  Aligned_cols=25  Identities=20%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|.....+..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.57  E-value=0.5  Score=29.13  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A           10 KKLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             SCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH
Confidence            3579999999999999999999764

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.55  E-value=0.55  Score=28.86  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|.....+..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHHH
Confidence            3679999999999999999999754

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=85.51  E-value=0.61  Score=28.59  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.46  E-value=0.47  Score=29.11  Aligned_cols=25  Identities=20%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.38  E-value=0.38  Score=28.85  Aligned_cols=25  Identities=20%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.+........|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCCeeCCCccchhCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.38  E-value=0.7  Score=28.44  Aligned_cols=25  Identities=12%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHh
Confidence            3579999999999999999999864

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.37  E-value=0.62  Score=28.55  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.+........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHh
Confidence            3579999999999999999999853

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.37  E-value=0.54  Score=28.99  Aligned_cols=25  Identities=24%  Similarity=0.628  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.32  E-value=0.71  Score=28.39  Aligned_cols=25  Identities=20%  Similarity=0.579  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             CcCCCCCCCCcccCCHHHHHHHHHh
Confidence            3579999999999999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=85.28  E-value=0.49  Score=32.27  Aligned_cols=23  Identities=17%  Similarity=0.548  Sum_probs=14.6

Q ss_pred             cccccccCcccccCHHHHHHHhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|.|+.|++.|........|++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~   25 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR   25 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH
Confidence            45666666666666666666654

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.23  E-value=0.58  Score=28.75  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=22.2

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeeCcccCcccCChHHHHHHHHH
Confidence            3679999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.18  E-value=0.42  Score=29.51  Aligned_cols=25  Identities=28%  Similarity=0.656  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.09  E-value=0.67  Score=28.53  Aligned_cols=25  Identities=20%  Similarity=0.533  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A           10 GKHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             SCCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.07  E-value=0.68  Score=28.43  Aligned_cols=25  Identities=20%  Similarity=0.510  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGGG
T ss_pred             CcCccCCCccchhCCHHHHHHHHHH
Confidence            3679999999999999999999764

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.04  E-value=0.5  Score=29.06  Aligned_cols=25  Identities=24%  Similarity=0.688  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999854

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.01  E-value=0.53  Score=28.96  Aligned_cols=25  Identities=16%  Similarity=0.595  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCChhHHHHHhHh
Confidence            3679999999999999999999753

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.01  E-value=0.61  Score=28.71  Aligned_cols=25  Identities=16%  Similarity=0.535  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEEccccCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.92  E-value=0.53  Score=29.03  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=21.3

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            579999999999999999999753

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=84.89  E-value=0.56  Score=28.91  Aligned_cols=25  Identities=20%  Similarity=0.567  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.86  E-value=0.44  Score=29.27  Aligned_cols=25  Identities=20%  Similarity=0.483  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTT
T ss_pred             CcCccCCCCCCccCChHHHHHHHHH
Confidence            3579999999999999999999764

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.85  E-value=0.69  Score=28.33  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999865

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.73  E-value=0.57  Score=28.78  Aligned_cols=25  Identities=20%  Similarity=0.570  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.71  E-value=0.7  Score=28.35  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.51  E-value=0.65  Score=28.66  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.46  E-value=0.56  Score=28.84  Aligned_cols=25  Identities=16%  Similarity=0.505  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCCeECCcCChhhCCHHHHHHHHHH
Confidence            3679999999999999999999863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=84.45  E-value=0.52  Score=30.35  Aligned_cols=25  Identities=12%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      ...|.|++|++.+........|++.
T Consensus        22 ~k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.35  E-value=0.64  Score=28.30  Aligned_cols=24  Identities=25%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.|........|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHHh
Confidence            579999999999999999999754

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.27  E-value=0.69  Score=28.32  Aligned_cols=25  Identities=16%  Similarity=0.542  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh
Confidence            3579999999999999999999864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=84.25  E-value=0.75  Score=28.14  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCeECCccccccCChHHHHHHHHH
Confidence            3679999999999999999999864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.24  E-value=0.7  Score=28.43  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.21  E-value=0.59  Score=28.63  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=84.18  E-value=0.63  Score=30.22  Aligned_cols=23  Identities=39%  Similarity=0.868  Sum_probs=18.2

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHH
Confidence            47788888888888888888764

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.17  E-value=0.56  Score=28.82  Aligned_cols=24  Identities=21%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             CcccccccCcccccCHHHHHHHhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .+.|.|++|++.|........|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH
Confidence            357999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.17  E-value=0.49  Score=29.02  Aligned_cols=25  Identities=16%  Similarity=0.492  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.17  E-value=0.72  Score=28.30  Aligned_cols=25  Identities=20%  Similarity=0.596  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.14  E-value=0.59  Score=28.49  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999753

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.07  E-value=0.73  Score=28.26  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CcCeECCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999854

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=84.05  E-value=0.73  Score=28.25  Aligned_cols=25  Identities=24%  Similarity=0.628  Sum_probs=22.2

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHTG
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHHh
Confidence            3679999999999999999999865

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.01  E-value=0.7  Score=28.35  Aligned_cols=25  Identities=16%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.98  E-value=0.5  Score=29.15  Aligned_cols=25  Identities=24%  Similarity=0.713  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCeECcccChhhCCHHHHHHHHHH
Confidence            3579999999999999999999754

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.93  E-value=0.52  Score=28.99  Aligned_cols=25  Identities=12%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|.....+..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHh
Confidence            3679999999999999999999864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=83.92  E-value=0.81  Score=28.04  Aligned_cols=25  Identities=24%  Similarity=0.484  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999865

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.91  E-value=0.66  Score=28.49  Aligned_cols=25  Identities=24%  Similarity=0.600  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      ...|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999854

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.90  E-value=0.76  Score=28.10  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHERL   34 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHHH
T ss_pred             CCCeECCCCCCccCchHHHHHHHHh
Confidence            3579999999999999999999853

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.90  E-value=0.7  Score=28.43  Aligned_cols=25  Identities=20%  Similarity=0.543  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCcCCCccChhhCChHHHHHHHHH
Confidence            3579999999999999999999864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.89  E-value=0.6  Score=28.74  Aligned_cols=25  Identities=12%  Similarity=0.384  Sum_probs=22.0

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeECcccCchhCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.89  E-value=0.6  Score=28.74  Aligned_cols=25  Identities=20%  Similarity=0.549  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECCcCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999753

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.86  E-value=0.75  Score=28.28  Aligned_cols=25  Identities=24%  Similarity=0.600  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3679999999999999999999864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.76  E-value=0.61  Score=28.64  Aligned_cols=25  Identities=16%  Similarity=0.534  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCchHHHHHHHHH
Confidence            3679999999999999999999864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.70  E-value=0.9  Score=27.82  Aligned_cols=25  Identities=16%  Similarity=0.590  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhhh
Confidence            3679999999999999999999754

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.68  E-value=0.77  Score=28.17  Aligned_cols=25  Identities=16%  Similarity=0.538  Sum_probs=22.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCChHHHHHHHhh
Confidence            3679999999999999999999864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.50  E-value=0.77  Score=28.16  Aligned_cols=25  Identities=16%  Similarity=0.591  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHHH
Confidence            3679999999999999999999853

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.50  E-value=0.69  Score=28.88  Aligned_cols=26  Identities=19%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             CCcccccccCcccccCHHHHHHHhhh
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      ..+.|.|++|++.|........|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHh
Confidence            34679999999999999999999864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=83.49  E-value=0.65  Score=24.97  Aligned_cols=23  Identities=22%  Similarity=0.595  Sum_probs=20.4

Q ss_pred             ccccc--cCcccccCHHHHHHHhhh
Q psy10921        208 TFNCD--VCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce--~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+  .|++.+........|++.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            58899  999999999999999864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.21  E-value=0.81  Score=27.96  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.14  E-value=0.7  Score=28.37  Aligned_cols=24  Identities=29%  Similarity=0.801  Sum_probs=21.4

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHH
Confidence            579999999999999999999764

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.10  E-value=0.9  Score=27.83  Aligned_cols=24  Identities=21%  Similarity=0.535  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .+.|.|++|++.|........|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCCEECCccCchhCChHHHHHHhH
Confidence            357999999999999999999986

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.79  E-value=0.78  Score=28.04  Aligned_cols=25  Identities=16%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCCeECCCcChhhCCHHHHHHHHHH
Confidence            3679999999999999999999853

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.58  E-value=0.88  Score=27.88  Aligned_cols=25  Identities=16%  Similarity=0.530  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCCeeCChHHHHHHHHH
Confidence            3579999999999999999999753

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.26  E-value=0.75  Score=28.22  Aligned_cols=24  Identities=17%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|........|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHHH
Confidence            579999999999999999999753

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.11  E-value=0.56  Score=28.82  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.4

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCcccChhhCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.08  E-value=0.69  Score=28.46  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.05  E-value=0.93  Score=27.68  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCcCcccCCHHHHHHHHHH
Confidence            3579999999999999999999853

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=81.96  E-value=0.6  Score=28.75  Aligned_cols=25  Identities=20%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCCcccCccCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=81.79  E-value=1  Score=24.96  Aligned_cols=23  Identities=22%  Similarity=0.652  Sum_probs=20.2

Q ss_pred             ccccc--cCcccccCHHHHHHHhhh
Q psy10921        208 TFNCD--VCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce--~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+  .|++.+........|++.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            58898  999999999999999864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=81.43  E-value=0.78  Score=25.57  Aligned_cols=24  Identities=29%  Similarity=0.782  Sum_probs=20.9

Q ss_pred             cccccc--cCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCD--VCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce--~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+  .|++.+........|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            468999  899999999999999865

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=81.34  E-value=0.87  Score=29.07  Aligned_cols=24  Identities=17%  Similarity=0.535  Sum_probs=18.7

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.+........|++.
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~   26 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRT   26 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHH
Confidence            468899999888888888888764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=81.20  E-value=0.14  Score=29.39  Aligned_cols=23  Identities=22%  Similarity=0.735  Sum_probs=18.5

Q ss_pred             ccccccCcccccCHHHHHHHhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .|.|+.|++.+........|++.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            58899999998887777777643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=81.05  E-value=0.81  Score=30.28  Aligned_cols=24  Identities=25%  Similarity=0.711  Sum_probs=20.8

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|+.|++.+........|++.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~   32 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVT   32 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHHH
Confidence            578999999999999999998865

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.99  E-value=0.78  Score=28.05  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999854

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.98  E-value=0.8  Score=27.79  Aligned_cols=25  Identities=28%  Similarity=0.691  Sum_probs=21.4

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCCeECCCCCchhCCHHHHHHHhHh
Confidence            3579999999999999899999753

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.94  E-value=0.42  Score=29.13  Aligned_cols=25  Identities=20%  Similarity=0.608  Sum_probs=21.6

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCCeECcccCcccCCHHHHHHHHHH
Confidence            3579999999999999999999753

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=80.80  E-value=0.68  Score=37.70  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=21.8

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMK  237 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~  237 (269)
                      +.-+||+|...+..   .+.|+.|+.|++-+
T Consensus        86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           86 KKGYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            56799999977764   56999999998755

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=80.77  E-value=1  Score=27.61  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             CCcccccccCcccccCHHHHHHHh
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHM  228 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~Hl  228 (269)
                      ..+.|.|+.|++.|.-...-..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            347899999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.68  E-value=0.77  Score=28.15  Aligned_cols=24  Identities=17%  Similarity=0.643  Sum_probs=21.3

Q ss_pred             CcccccccCcccccCHHHHHHHhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .+.|.|++|++.|........|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCCeECCcCCchhCCHHHHHHHHH
Confidence            367999999999999999999975

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=80.54  E-value=1.1  Score=30.56  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=22.3

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|++|++.|........|++.
T Consensus        30 ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C           30 YRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CcCeECCCCCCCcCCHHHHHHHhCc
Confidence            3679999999999999999999853

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.13  E-value=0.92  Score=31.16  Aligned_cols=24  Identities=13%  Similarity=0.376  Sum_probs=21.5

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|.....+..|++.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRK   29 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHH
Confidence            679999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	1e-05

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 199 VDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQ 243
            DP     G   C  C R FI     + H  S  H++   ++  +
Sbjct: 6   FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.39
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.95
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	95.6
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	93.39
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	92.95
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.63
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.48
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.46
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.13
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	91.82
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.81
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	91.08
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.47
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	90.02
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	89.56
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	88.28
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	87.35
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	86.27
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	81.97
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	81.25
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	81.07

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.9e-08  Score=68.45  Aligned_cols=37  Identities=24%  Similarity=0.539  Sum_probs=33.7

Q ss_pred             CcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER  242 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk  242 (269)
                      -.+|+|-+|++.|..+.+|+.|.+||+||++++..+.
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            3689999999999999999999999999999987743

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.27  E-value=0.0002  Score=47.68  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             cccccccCcccccCHHHHHHHhhhhHHHHHhHHHH
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKME  241 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~k  241 (269)
                      ....|++|+.+|.....-++|-.||.|.|+++..+
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            45689999999999999999999999999988654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.00074  Score=38.41  Aligned_cols=28  Identities=29%  Similarity=0.625  Sum_probs=25.9

Q ss_pred             ccccccCcccccCHHHHHHHhhhhHHHH
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSVKHRR  235 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk  235 (269)
                      .|.|..|+-.|-...+-..|++|+.|.|
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            4899999999999999999999999975

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.60  E-value=0.0036  Score=43.21  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             CCcccccccCcccccCHHHHHHHhhhhHHHHHhHH
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVK  239 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk  239 (269)
                      .-+.-.|.+|+.+++.+-|-..|-.|++|.++++.
T Consensus        29 lFtd~~CkvC~a~L~seSQriaHYeskkHa~kvr~   63 (72)
T d1zu1a1          29 IFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRR   63 (72)
T ss_dssp             TBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHH
T ss_pred             hcchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667899999999999999999999999887765

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.016  Score=33.32  Aligned_cols=24  Identities=21%  Similarity=0.674  Sum_probs=21.7

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      ++|.|+.|++.|........|++.
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CCEECCcCCCeecchHHhhhhcCc
Confidence            469999999999999999999875

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.026  Score=38.05  Aligned_cols=32  Identities=22%  Similarity=0.469  Sum_probs=25.9

Q ss_pred             ccccccCccccc-C-HHHHHHHhhhhHHHHHhHH
Q psy10921        208 TFNCDVCNRLFI-G-QHQYEQHMNSVKHRRMKVK  239 (269)
Q Consensus       208 ~~~Ce~C~~~~~-g-e~eW~~HlkSr~Hrk~~kk  239 (269)
                      +|+||-|+..|. . ...-..|+.|++|+.+++.
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~   36 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHH
Confidence            589999998885 3 4457899999999887653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.63  E-value=0.037  Score=31.65  Aligned_cols=24  Identities=38%  Similarity=0.818  Sum_probs=21.3

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|.-......|++.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             CcCCCCCCCCCCCCchHcccccCc
Confidence            368999999999999999999864

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.039  Score=31.07  Aligned_cols=23  Identities=30%  Similarity=0.784  Sum_probs=19.2

Q ss_pred             cccccccCcccccCHHHHHHHhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|.|++|++.|-..++-..|.+
T Consensus         2 kPf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCcccchhhhhhhcchhhhhhhh
Confidence            57999999999988888777754

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.04  Score=33.04  Aligned_cols=26  Identities=15%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CcccccccCcccccCHHHHHHHhhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNSV  231 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr  231 (269)
                      .++|.|+.|++.|.....+..|++..
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCEeCCCCcccccchHHHHHHcccc
Confidence            47899999999999999999998653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.13  E-value=0.043  Score=31.16  Aligned_cols=24  Identities=25%  Similarity=0.670  Sum_probs=21.3

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|++|++.|.-...-..|++.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCC
Confidence            579999999999999999998764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.048  Score=32.56  Aligned_cols=25  Identities=20%  Similarity=0.569  Sum_probs=22.3

Q ss_pred             CCcccccccCcccccCHHHHHHHhh
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      ..++|.|++|++.|.....-..|++
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccccCCCCCCcccChHHHHHHcc
Confidence            3478999999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.055  Score=29.56  Aligned_cols=23  Identities=26%  Similarity=0.709  Sum_probs=20.4

Q ss_pred             cccccCcccccCHHHHHHHhhhh
Q psy10921        209 FNCDVCNRLFIGQHQYEQHMNSV  231 (269)
Q Consensus       209 ~~Ce~C~~~~~ge~eW~~HlkSr  231 (269)
                      +.|++|++.|.....-..|++|.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CccchhhhHhcchhHHHHHhhcc
Confidence            57999999999999999998873

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.069  Score=31.88  Aligned_cols=25  Identities=16%  Similarity=0.580  Sum_probs=22.4

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .++|.|+.|++.|........|++.
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcc
Confidence            4789999999999999999999853

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.083  Score=32.21  Aligned_cols=25  Identities=16%  Similarity=0.513  Sum_probs=21.9

Q ss_pred             CcccccccCcccccCHHHHHHHhhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      .+.|.|+.|++.|........|+++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCccCCCCCCCcCChHHhhccCcC
Confidence            3689999999999999999999763

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.089  Score=29.36  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             cccccccCcccccCHHHHHHHhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|.|+.|++.|.....-..|.+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCcc
Confidence            46999999999998888888865

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.13  Score=30.92  Aligned_cols=26  Identities=19%  Similarity=0.569  Sum_probs=22.4

Q ss_pred             CCcccccccCcccccCHHHHHHHhhh
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      ..++|.|+.|++.|.-...-..|.+.
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCcc
Confidence            34789999999999999999888764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.28  E-value=0.19  Score=30.01  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             CCcccccccCcccccCHHHHHHHhh
Q psy10921        205 NAGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       205 ~~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      ..++|.|+.|++.|.....-..|++
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CccCeEeCCCCCEecCHHHHHHHHh
Confidence            4478999999999999999999975

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.35  E-value=0.19  Score=29.35  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             CcccccccCcccccCHHHHHHHhh
Q psy10921        206 AGTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       206 ~~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      .++|.|+.|++.|.-...-..|.+
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeeCCCCCCEeCchHHhHhhcc
Confidence            478999999999999988888875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.27  E-value=0.14  Score=30.86  Aligned_cols=24  Identities=29%  Similarity=0.688  Sum_probs=20.8

Q ss_pred             cccccccCcccccCHHHHHHHhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNS  230 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkS  230 (269)
                      +.|.|.+|+++|.....-.-|+++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CccCCCCCCCccCCcccccchHhh
Confidence            579999999999998888888743

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.97  E-value=0.46  Score=26.46  Aligned_cols=24  Identities=13%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             ccccccCcccccCHHHHHHHhhhh
Q psy10921        208 TFNCDVCNRLFIGQHQYEQHMNSV  231 (269)
Q Consensus       208 ~~~Ce~C~~~~~ge~eW~~HlkSr  231 (269)
                      +|+|+-|++.+--..--+.|++|.
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsH   24 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTH   24 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CccccccCcccCCHHHHHHHHHHh
Confidence            489999999888888888898763

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=0.34  Score=30.56  Aligned_cols=23  Identities=30%  Similarity=0.730  Sum_probs=20.7

Q ss_pred             cccccccCcccccCHHHHHHHhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMN  229 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~Hlk  229 (269)
                      +.|.|+.|++.+.....+..|++
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHh
Confidence            57999999999999999999985

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.07  E-value=0.57  Score=26.10  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=21.8

Q ss_pred             cccccccCcccccCHHHHHHHhhhh
Q psy10921        207 GTFNCDVCNRLFIGQHQYEQHMNSV  231 (269)
Q Consensus       207 ~~~~Ce~C~~~~~ge~eW~~HlkSr  231 (269)
                      .-++|.+|.-+|...-+-..|+-|.
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvsh   27 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSH   27 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecc
Confidence            4689999999999999999998763